Citrus Sinensis ID: 018119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHNT
Secondary Structure (PSIPRED)
ccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcccccccEEEcccccccccccccccccEEEccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHccHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHEEEEcccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHccccccEEEEEccccccccccccccEEEEEcHHHHHHHHccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHcccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
masesvssqammggdgqysyarnsefqshGVETAKAIINRVIsdkldlnrvasssskvFSIADlgcsvgpntfNAVQNIIDSVKLKcqsyghdkLEFQVFFNDLVSNDFNALYkslpsdrqyyaagvpgsfhnrlfpkasinffhcsyglqwlsstpkelndqnspaynkgriyysrgpnevVEAYSAESAKGIESFLLARAQELASGGLMAlivpclpdgispgecsVLASADLLGDCLMDMAKMGllseaqvdsfnlpsyfptpQELKALLKRNasfsiekfePLALSAQRqlatntptVVSHLRANLEILVKEHFGNGIIEDLFDRfskkidessvysqtsvykplVENVIILKHNT
Flexible Loop (DISEMBL)
masesvssqammgGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDEssvysqtsvykplvenviilkhnt
Low Complexity Region (SEG)
MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHNT
Disordered region (IsUnstruct)
******************************VETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLS**************NKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIIL****
Disordered Region (DISOPRED)
******S***MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN*
Disordered Region (DISEMBL)
*************GDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHNT
Disordered Region (DISPRO)
***ESVSSQA*MGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9FKC8	362	Probable S-adenosylmethio	no	no	0.911	0.906	0.437	2e-74
Q9FKD0	362	Probable S-adenosylmethio	no	no	0.955	0.950	0.415	6e-73
Q9FKR0	361	Probable S-adenosylmethio	no	no	0.927	0.925	0.423	6e-73
Q9LS10	359	Probable S-adenosylmethio	no	no	0.891	0.894	0.439	4e-72
Q0J998	404	Indole-3-acetate O-methyl	yes	no	0.875	0.779	0.345	1e-49
Q68CM3	365	Probable caffeine synthas	N/A	no	0.855	0.843	0.346	3e-49
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.852	0.831	0.344	2e-48
Q9FLN8	386	Indole-3-acetate O-methyl	no	no	0.883	0.823	0.329	2e-47
Q9SPV4	359	Salicylate O-methyltransf	N/A	no	0.911	0.913	0.345	2e-45
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.872	0.844	0.344	8e-45

>sp|Q9FKC8|MT799_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2

 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 206/336 (61%), Gaps = 8/336 (2%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSK-VFSIADLGCSVG 69
           M GGDG +SY  NS +Q   ++ AK   +  I   LDL  +  +S + +  IAD GCS+G
Sbjct: 10  MNGGDGPHSYIHNSSYQKVAIDGAKEKTSEAILKNLDLELLNRNSDENILRIADFGCSIG 69

Query: 70  PNTFNAVQNIIDSVKLKC----QSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYY 123
           PNTF  VQNIID+VK K      +Y    LEFQV FND  +NDFN L+++ P  S + Y 
Sbjct: 70  PNTFEVVQNIIDTVKQKNLKENNAYIGAPLEFQVCFNDQPNNDFNTLFRTQPISSKQAYL 129

Query: 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVV 183
           + GVPGSFH R+ PK S++  H +Y L WLS+ P+ + D+ SPA NK  I  +    EV 
Sbjct: 130 SVGVPGSFHGRVLPKNSLHIGHITYALHWLSTVPQHVCDKKSPALNKSYIQCNNLVEEVT 189

Query: 184 EAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDM 243
           EAY  +  K +  FL ARA+EL SGGLM L   CLPDG+           D++GDCLMDM
Sbjct: 190 EAYRVQFKKDMGDFLGARAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCLMDM 249

Query: 244 AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVV 303
           AK G+ ++ +++ F+LP Y P   E KA ++RN +FSIE  E ++     +  TN   + 
Sbjct: 250 AKQGITTKEKIELFSLPIYIPHISEFKAEIERNENFSIETMEKISHPMDYKPLTND-FIT 308

Query: 304 SHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSV 339
           S  RA L  +++EHFG+G++ +LFDRF+KK+++  +
Sbjct: 309 SMFRAILNTIIEEHFGDGVVNELFDRFAKKLNKYPI 344

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1

 Score =  275 bits (702), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 147/354 (41%), Positives = 215/354 (60%), Gaps = 10/354 (2%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSK-VFSIADLGCSVG 69
           M GGDG +SY  NS +Q   ++  K   +  I +KLDL  +  +S + +  I D GCS+G
Sbjct: 10  MNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLEFLNRNSEENILRIVDFGCSIG 69

Query: 70  PNTFNAVQNIIDSVKLK----CQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYY 123
           PNTF+ VQNIID+VK K     ++Y    LEFQV FND  +NDFN L+++ P  S ++Y+
Sbjct: 70  PNTFDVVQNIIDTVKQKRLKENKTYIGAPLEFQVCFNDQPNNDFNTLFRTQPFFSRKEYF 129

Query: 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVV 183
           + GVPGSFH R+ PK S++  H SY L WLS+ P+ + D+ SPA NK  I  +   +EV 
Sbjct: 130 SVGVPGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQCNNLVDEVT 189

Query: 184 EAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDM 243
           +AY  +  K    FL ARA+EL SGGLM L   CLPDGI           D++GDCLMD+
Sbjct: 190 KAYKIQFRKDFGGFLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCLMDL 249

Query: 244 AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVV 303
           AK+G+ S+ +++ F+LP+Y P   E KA +++N +F++E  E ++        TN   + 
Sbjct: 250 AKLGITSKEKIELFSLPTYIPHISEFKANIEQNENFNVETMEEISHPMDYMPLTND-FIT 308

Query: 304 SHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
           S  RA L  +++EHFG G++ +LF R +K++D+  +  +    K  V   I+LK
Sbjct: 309 SMFRAILNTIIEEHFGEGVVNELFSRLAKRLDKYPIDFKRC--KKYVNYFIVLK 360

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/345 (42%), Positives = 213/345 (61%), Gaps = 11/345 (3%)

Query: 3   SESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIA 62
           S S  S  M GGD Q+SY  NS +Q  G++  +    + I + LDL  +  + S  F+IA
Sbjct: 2   STSSQSYPMSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLS-TFTIA 60

Query: 63  DLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDK-----LEFQVFFNDLVSNDFNALYKSLP 117
           D GCS+GPNTF+AVQNIID VKLK      +      LEFQV+FNDL +NDFN L+++ P
Sbjct: 61  DFGCSIGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQP 120

Query: 118 --SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
             S ++Y++ GVPGSF+ R+ P+ SI+  + S+   WLS  P+E+ D+NS A+NK  I+ 
Sbjct: 121 PSSKQEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHC 180

Query: 176 SRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADL 235
           +    EV EAY  +  K +  FL ARA+EL  GGLM  +  CLPDG++  E       D 
Sbjct: 181 NNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDT 240

Query: 236 LGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR-Q 294
           +GDCL DMA +G+ +E +++ FNLP YFP   ELK  +++N  F+IE  E ++   +  Q
Sbjct: 241 IGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQ 300

Query: 295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSV 339
           L+ N   + S  RA L  +++ HFG  ++++LF +F+KK+ E  +
Sbjct: 301 LSNN--FITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEHPI 343

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/330 (43%), Positives = 201/330 (60%), Gaps = 9/330 (2%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M  G  Q+SY  NS +Q   + +A     R I +KLDL    SS    F IAD GCS+GP
Sbjct: 10  MSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQ--LSSDFGTFRIADFGCSIGP 67

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDK----LEFQVFFNDLVSNDFNALYKSLP--SDRQYYA 124
           NTF+  Q+IID+VK K      +     LEFQVFFND  +NDFN L+++ P   +R+Y++
Sbjct: 68  NTFHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPLSPEREYFS 127

Query: 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVE 184
            GVPGSF+ R+ P+ SI+  H SY   WLS  P  + D+ S A+NK  I  +    EV +
Sbjct: 128 VGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNLLEEVTK 187

Query: 185 AYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMA 244
           AY  +  K +E FL ARA+EL  GGLM +I  CLPDG+S  E       D +GDCLMDMA
Sbjct: 188 AYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLMDMA 247

Query: 245 KMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVS 304
           K G+ SE ++D F+LP YFP   ELK  +++N SF+IE  E  +   + +  TN   + S
Sbjct: 248 KSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPLTND-FITS 306

Query: 305 HLRANLEILVKEHFGNGIIEDLFDRFSKKI 334
             RA L  ++++HFG+G++++LF R +KK+
Sbjct: 307 TFRAFLTTIIEKHFGDGVVDELFYRLAKKL 336

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0J998|IAMT1_ORYSJ Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 184/356 (51%), Gaps = 41/356 (11%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG+G  SY  NS+ Q+     A+ +++  + + LD     SSS K+F+ ADLGCS G 
Sbjct: 32  MKGGNGDGSYLNNSQAQAL---HARRMLH-FLEETLDAMMERSSSDKLFTAADLGCSCGS 87

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------------- 117
           N+   V  I+  V    +S G D  EFQVFF+DL SNDFN L++ LP             
Sbjct: 88  NSLFIVDVIVRRVSEAYESRGRDAPEFQVFFSDLPSNDFNTLFQLLPPLLAPVAGSLEEC 147

Query: 118 ---------SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAY 168
                    + R Y+AAGVPG+F+ RLFP  SI+ F  ++ L WLS  P+E+ D  SPAY
Sbjct: 148 LAAGEGAATATRPYHAAGVPGTFYGRLFPGESIDVFTSTFSLHWLSQVPEEVGDSASPAY 207

Query: 169 NKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECS 228
           N GR++  R    V  AY  +    +  FL +RA+E+  GG  A+ + CL  G S G+ +
Sbjct: 208 NGGRVFVHRATEAVAAAYKRQFQADLARFLRSRAREMKRGG--AMFLACL--GRSSGDPA 263

Query: 229 VLASADLL-----GDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEK 283
               A LL      D   D+ + G++   + DSFN+P Y P+ QE + +++ + +F+I++
Sbjct: 264 DQGGAGLLFGTHFQDAWDDLVQEGVVEGEKRDSFNIPVYAPSLQEFRDVVRADGAFAIDR 323

Query: 284 FE------PLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKK 333
            E      PL +      A     + +  +A   +LV  H G      LF+R  ++
Sbjct: 324 LELVRGGSPLVVDRPDDAAEVGRAMANSCKAVAGVLVDAHIGERRGAQLFERLERR 379

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 183/343 (53%), Gaps = 35/343 (10%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSI------ADL 64
           M  G+G+ SYA+NS F     +T  ++   V+      N V +  SK F +       DL
Sbjct: 10  MNKGEGESSYAQNSSF----TQTVTSMTMPVLE-----NAVETLFSKDFHLLQALNAVDL 60

Query: 65  GCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS------ 118
           GC+ GP TF  +  I   ++ KC+      LE QV+ NDL  NDFN L+K LPS      
Sbjct: 61  GCAAGPTTFTVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPSKVVGNK 120

Query: 119 --DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS 176
             +   Y  GVPGSFH RLFP+ S++  H  Y + WL+  PK L  +   A NKG+IY S
Sbjct: 121 CEEVSCYVVGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKGKIYIS 180

Query: 177 R-GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGIS--PGECSVLASA 233
           +  P  V EAY ++  +    FL +R+QE+   G M LI   L   +S  P +     + 
Sbjct: 181 KTSPPVVREAYLSQFHEDFTMFLNSRSQEVVPNGCMVLI---LRGRLSSDPSDMGSCFTW 237

Query: 234 DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR 293
           +LL   + ++   GL+ E ++D+FN+PSYFP+ +E+K +++RN SF+I+  E   L +  
Sbjct: 238 ELLAVAIAELVSQGLIDEDKLDTFNVPSYFPSLEEVKDIVERNGSFTIDHMEGFELDSP- 296

Query: 294 QLATNTPTV-----VSHLRANLEILVKEHFGNGIIEDLFDRFS 331
           ++  N   V      +  RA  E ++   FG+ I++ L+++F+
Sbjct: 297 EMQENDKWVRGEKFATVARAFTEPIISNQFGHEIMDKLYEKFT 339

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 179/343 (52%), Gaps = 36/343 (10%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSI-----ADLG 65
           M  G+G+ SYA+NS F       A+  +          N V +  S+ F +     ADLG
Sbjct: 15  MNRGEGESSYAQNSSFTQQVASMAQPALE---------NAVETLFSRDFHLQALNAADLG 65

Query: 66  CSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR----- 120
           C+ GPNTF  +  I   ++ KC+      LE QV+ NDL  NDFN L+K L S+      
Sbjct: 66  CAAGPNTFAVISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSSEVIGNKC 125

Query: 121 ---QYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSR 177
                Y  GVPGSFH RLFP+ S++  H SY + WL+  PK L  +   A NKG+IY S+
Sbjct: 126 EEVPCYVMGVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKGKIYISK 185

Query: 178 -GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV---PCLPDGISPGECSVLASA 233
             P  V EAY ++  +    FL AR+QE+   G M LI+    C      P +     + 
Sbjct: 186 TSPPVVREAYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQC----SDPSDMQSCFTW 241

Query: 234 DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR 293
           +LL   + ++   GL+ E ++D+FN+PSYF + +E+K +++R+ SF+I+  E   L +  
Sbjct: 242 ELLAMAIAELVSQGLIDEDKLDTFNIPSYFASLEEVKDIVERDGSFTIDHIEGFDLDSV- 300

Query: 294 QLATNTPTVVSH-----LRANLEILVKEHFGNGIIEDLFDRFS 331
           ++  N   V        +RA  E ++   FG  I++ L+D+F+
Sbjct: 301 EMQENDKWVRGEKFTKVVRAFTEPIISNQFGPEIMDKLYDKFT 343

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 10  AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           +M GG GQ SYA NS+ Q+    +   ++   + + + LN  +S+S   F+  DLGCS G
Sbjct: 20  SMKGGKGQDSYANNSQAQAMHARSMLHLLEETL-ENVHLN--SSASPPPFTAVDLGCSSG 76

Query: 70  PNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------------ 117
            NT + +  I+  +  +  + G D  EF  FF+DL SNDFN L++ LP            
Sbjct: 77  ANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECL 136

Query: 118 ---SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIY 174
               +R Y+ AGVPGSF+ RLFP  +I+FFH ++ L WLS  P+ + D+ S AYN+GR++
Sbjct: 137 AADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVF 196

Query: 175 YSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP----DGISPGECSVL 230
                 +   AY  +    +  FL ARA E+  GG M L+  CL     D    G   +L
Sbjct: 197 IHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV--CLGRTSVDPTDQGGAGLL 254

Query: 231 ASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF------ 284
                  D   D+ + GL++  + D FN+P Y P+ Q+ K ++  N SF+I+K       
Sbjct: 255 FGTHFQ-DAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGG 313

Query: 285 EPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKK 333
            PL ++     +       S  R+   +LV+ H G  +   LF R   +
Sbjct: 314 SPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 362

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. Required for correct leaf pattern formation. MeIAA seems to be an inactive form of IAA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 175/356 (49%), Gaps = 28/356 (7%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG G+ SYA NS  Q   +   K I    I+     + V +      +IADLGCS GP
Sbjct: 9   MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTR----LAIADLGCSSGP 64

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKL-EFQVFFNDLVSNDFNALYKSLP----SDRQYYAA 125
           N   AV  +I +V+   +  G +   E+Q+F NDL  NDFNA+++SLP     D   +  
Sbjct: 65  NALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN 124

Query: 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG-PNEVVE 184
           GVPGSF+ RLFP+ +++F H SY L WLS  P  +        NKG IY +   P  V+ 
Sbjct: 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCPQSVLN 178

Query: 185 AYSAESAKGIESFLLARAQELASGGLMAL-IVPCLPDGISPGECSVLASADLLGDCLMDM 243
           AY  +  +    FL  RAQE+  GG M L I+    +  +  EC ++    LL   L  M
Sbjct: 179 AYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQ--LLAMALNQM 236

Query: 244 AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL---------SAQRQ 294
              GL+ E ++D FN+P Y P+P E++A + +  SF I+  E   +              
Sbjct: 237 VSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGS 296

Query: 295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLV 350
           +      V   +RA  E L+ +HFG  IIED+F R+   I E     +T     +V
Sbjct: 297 VEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIV 352

Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 9

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score =  181 bits (459), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 177/343 (51%), Gaps = 29/343 (8%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG+G  SYA+NS +    +   K ++ + + + L  N    + +K   +ADLGC+ GP
Sbjct: 9   MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRAN--LPNINKCIKVADLGCASGP 66

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKLE---FQVFFNDLVSNDFNALYKSLPS--------- 118
           NT   V++I+ S+  K      ++LE    Q+F NDL  NDFN+++K LPS         
Sbjct: 67  NTLLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKEN 125

Query: 119 DRQY---YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
            R+        +PGSF++RLFP+ S++F H  Y LQWLS  P  L  +   + NKG IY 
Sbjct: 126 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGISTNKGSIYS 185

Query: 176 SRGPN-EVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASAD 234
           S+     V +AY  +  K   +FL   ++EL S G M L   C+  G+   E     + D
Sbjct: 186 SKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLT--CICKGV---ELDARNAID 240

Query: 235 LLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQ 294
           LL   + D+   G L E ++DSFNLP Y P+ +E+K +++   SF I   E   +     
Sbjct: 241 LLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAG 300

Query: 295 LATN-----TPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSK 332
            + +        V S +RA  E ++  HFG  II D+F RF+K
Sbjct: 301 FSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAK 343

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
296087219	806	unnamed protein product [Vitis vinifera]	0.977	0.436	0.579	1e-111
225462821	355	PREDICTED: probable S-adenosylmethionine	0.966	0.980	0.580	1e-110
147833898	358	hypothetical protein VITISV_030501 [Viti	0.977	0.983	0.576	1e-110
224143481	364	predicted protein [Populus trichocarpa]	0.905	0.895	0.510	3e-90
224118708	364	predicted protein [Populus trichocarpa]	0.936	0.925	0.495	1e-89
224144541	364	predicted protein [Populus trichocarpa]	0.905	0.895	0.507	1e-89
225424403	353	PREDICTED: probable S-adenosylmethionine	0.902	0.920	0.496	2e-87
359491489	449	PREDICTED: probable S-adenosylmethionine	0.9	0.721	0.493	3e-87
225424401	353	PREDICTED: probable S-adenosylmethionine	0.902	0.920	0.493	6e-87
297737617	347	unnamed protein product [Vitis vinifera]	0.902	0.936	0.493	6e-87

>gi|296087219|emb|CBI33593.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 251/359 (69%), Gaps = 7/359 (1%)

Query: 1   MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFS 60
           MA  S  S  M GG+GQYSY RNS  Q  GVE +KA+I   + +KLD N      S +F+
Sbjct: 1   MACMSTESCPMNGGNGQYSYTRNSSIQRWGVEASKALIGEAVWEKLDTN-----FSTLFN 55

Query: 61  IADLGCSVGPNTFNAVQNIIDSVKLKCQSYG--HDKLEFQVFFNDLVSNDFNALYKSLPS 118
           IADLGCSVGPNTF  V+NII+SVKLK  S     + +EFQVFFNDL SNDFN LY+SLP 
Sbjct: 56  IADLGCSVGPNTFIVVENIIESVKLKYPSPNPNSEGIEFQVFFNDLASNDFNTLYRSLPR 115

Query: 119 DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG 178
           DR+Y A+ VPGSFH RLFPK+S++F H SY L WLS  PKEL D+NSPA+NKGRI Y   
Sbjct: 116 DREYAASIVPGSFHGRLFPKSSLHFIHSSYTLHWLSKVPKELLDKNSPAWNKGRISYGSA 175

Query: 179 PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGD 238
           PNEVV+AYSA+ AK + SFL ARAQEL  GGLMALI+PCLP   SP EC ++A  DLLGD
Sbjct: 176 PNEVVQAYSAQFAKDMGSFLKARAQELVHGGLMALIIPCLPVDTSPSECPLIAVMDLLGD 235

Query: 239 CLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATN 298
            LMDMA+MGL+SEA+VDSFN P Y+PT  ELK L++RN  FSI++ EPLA S       N
Sbjct: 236 SLMDMARMGLISEAKVDSFNFPKYYPTQHELKTLIERNGYFSIDRTEPLAQSTTHARDLN 295

Query: 299 TPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
               +SH RA  E ++K HFG+ II+ LFDRF KK+ + S        K + E  ++LK
Sbjct: 296 FQIFISHTRAAWEGVIKMHFGSDIIDGLFDRFMKKVLKFSPLISRHSSKQIAEIFVLLK 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462821|ref|XP_002266547.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780-like [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/355 (58%), Positives = 249/355 (70%), Gaps = 7/355 (1%)

Query: 5   SVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADL 64
           S  S  M GG+GQYSY RNS  Q  GVE +KA+I   + +KLD N      S +F+IADL
Sbjct: 2   STESCPMNGGNGQYSYTRNSSIQRWGVEASKALIGEAVWEKLDTN-----FSTLFNIADL 56

Query: 65  GCSVGPNTFNAVQNIIDSVKLKCQSYG--HDKLEFQVFFNDLVSNDFNALYKSLPSDRQY 122
           GCSVGPNTF  V+NII+SVKLK  S     + +EFQVFFNDL SNDFN LY+SLP DR+Y
Sbjct: 57  GCSVGPNTFIVVENIIESVKLKYPSPNPNSEGIEFQVFFNDLASNDFNTLYRSLPRDREY 116

Query: 123 YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEV 182
            A+ VPGSFH RLFPK+S++F H SY L WLS  PKEL D+NSPA+NKGRI Y   PNEV
Sbjct: 117 AASIVPGSFHGRLFPKSSLHFIHSSYTLHWLSKVPKELLDKNSPAWNKGRISYGSAPNEV 176

Query: 183 VEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMD 242
           V+AYSA+ AK + SFL ARAQEL  GGLMALI+PCLP   SP EC ++A  DLLGD LMD
Sbjct: 177 VQAYSAQFAKDMGSFLKARAQELVHGGLMALIIPCLPVDTSPSECPLIAVMDLLGDSLMD 236

Query: 243 MAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTV 302
           MA+MGL+SEA+VDSFN P Y+PT  ELK L++RN  FSI++ EPLA S       N    
Sbjct: 237 MARMGLISEAKVDSFNFPKYYPTQHELKTLIERNGYFSIDRTEPLAQSTTHARDLNFQIF 296

Query: 303 VSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
           +SH RA  E ++K HFG+ II+ LFDRF KK+ + S        K + E  ++LK
Sbjct: 297 ISHTRAAWEGVIKMHFGSDIIDGLFDRFMKKVLKFSPLISRHSSKQIAEIFVLLK 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833898|emb|CAN73169.1| hypothetical protein VITISV_030501 [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/359 (57%), Positives = 250/359 (69%), Gaps = 7/359 (1%)

Query: 1   MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFS 60
           MA  S  S  M GG+GQYSY RNS  Q  GVE +KA+I   + +KLD N      S +F+
Sbjct: 1   MACMSTESCPMNGGNGQYSYTRNSSIQXWGVEASKALIGEAVWEKLDTN-----FSTLFN 55

Query: 61  IADLGCSVGPNTFNAVQNIIDSVKLKCQSYG--HDKLEFQVFFNDLVSNDFNALYKSLPS 118
           IADLGCSVGPNTF  V+NII+SVKLK  S     + +EFQVFFNDL SNDFN L +SLP 
Sbjct: 56  IADLGCSVGPNTFIVVENIIESVKLKYPSPNPNSEGIEFQVFFNDLASNDFNTLXRSLPR 115

Query: 119 DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG 178
           DR+Y A+ VPGSFH RLFPK+S++F H SY L WLS  PKEL D+NSPA+NKGRI Y   
Sbjct: 116 DREYAASIVPGSFHGRLFPKSSLHFIHSSYTLHWLSKVPKELLDKNSPAWNKGRISYGSA 175

Query: 179 PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGD 238
           PNEVV+AYSA+ AK + SFL ARAQEL  GGLMALI+PCLP   SP EC ++A  DLLGD
Sbjct: 176 PNEVVQAYSAQFAKDMGSFLKARAQELVHGGLMALIIPCLPVDTSPSECPLIAVMDLLGD 235

Query: 239 CLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATN 298
            LMDMA+MGL+SEA+VDSFN P Y+PT  ELK L++RN  FSI++ EPLA S       N
Sbjct: 236 SLMDMARMGLISEAKVDSFNFPKYYPTQHELKTLIERNGYFSIDRTEPLAQSTTHARDLN 295

Query: 299 TPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
               +SH RA  E ++K HFG+ II+ LFDRF KK+ + S        K + E  ++LK
Sbjct: 296 FQIFISHTRAAWEGVIKMHFGSDIIDGLFDRFMKKVLKFSPLISRHSSKQIAEIFVLLK 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143481|ref|XP_002336046.1| predicted protein [Populus trichocarpa] gi|222839786|gb|EEE78109.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/333 (51%), Positives = 231/333 (69%), Gaps = 7/333 (2%)

Query: 10  AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           AM GGDG++SYA+NS  Q H V  +K  I   I++KLDL ++  S+SK   I D+GCSVG
Sbjct: 13  AMNGGDGRFSYAKNSFLQGHSVNASKEKIGEAIAEKLDL-KILLSTSKTIRIVDVGCSVG 71

Query: 70  PNTFNAVQNIIDSVKLKCQSYG---HDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
           PNTF A+QNII+S++ K Q+     + K EFQVFFNDL SNDFN L+ SLP +RQY+AAG
Sbjct: 72  PNTFLAIQNIIESIERKYQAQYLNINQKPEFQVFFNDLTSNDFNTLFSSLPPNRQYFAAG 131

Query: 127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
           VPGSFH RLFP+ SI+FF+    L  LS  P+EL D+NSP++NKGRI+Y   P+EVV AY
Sbjct: 132 VPGSFHGRLFPEGSIHFFYSCIALHILSKAPEELLDKNSPSWNKGRIHYINAPDEVVNAY 191

Query: 187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
           + + AKGIE FL ARA+E+ SGG+  +  P  P GI   +    A  +LL   L+DMAK 
Sbjct: 192 ATQYAKGIEIFLDARAKEMVSGGMAVMSFPANPTGIPYSQTFTGAMFELLESSLLDMAKE 251

Query: 247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE---PLALSAQRQLATNTPTVV 303
           G +SEAQVDSFNLP Y P+ +E+  L+++N SF IEK E   P   ++    ++    +V
Sbjct: 252 GKISEAQVDSFNLPMYVPSLEEMMELVQKNGSFDIEKMELTSPGVHASMTNTSSMGKAIV 311

Query: 304 SHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336
            H+RA +E ++ +HFG+ II++LF+R++KK +E
Sbjct: 312 MHVRAGMERMLIQHFGSEIIDELFNRYAKKFEE 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118708|ref|XP_002317887.1| predicted protein [Populus trichocarpa] gi|222858560|gb|EEE96107.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/343 (49%), Positives = 229/343 (66%), Gaps = 6/343 (1%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG G YSY++NS +Q   +   K +I   I++KLD+     SSS    I+D+GCSVGP
Sbjct: 16  MNGGHGLYSYSKNSTYQKKVIVAVKDLITEAIAEKLDI--CVLSSSNTICISDMGCSVGP 73

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKL---EFQVFFNDLVSNDFNALYKSLPSDRQYYAAGV 127
           NTF AVQNI+++V  K QS GHD     EFQVF ND   NDFN L+KSLP +R YY AG+
Sbjct: 74  NTFVAVQNIVEAVLNKYQSQGHDHSRLPEFQVFLNDHALNDFNTLFKSLPPNRNYYVAGM 133

Query: 128 PGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYS 187
           PGSFH RLFP  S++  H SY L WLS  PKE+ D +SPA+NKGRIYYS   ++ V+A++
Sbjct: 134 PGSFHGRLFPNDSLHIVHTSYALNWLSQVPKEVEDVSSPAWNKGRIYYSSAGDQTVKAFA 193

Query: 188 AESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMG 247
            + A+ ++ FL ARAQE+  GGL+ L+VP   D           S D+LG CLMDMAKMG
Sbjct: 194 DQFAEDLDCFLHARAQEVVRGGLIILMVPGRLDTSPHTRVVSNISYDILGSCLMDMAKMG 253

Query: 248 LLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL-SAQRQLATNTPTVVSHL 306
           ++SE +VDSFN+P YF +PQE++A ++RN  F++E+ E L L  +Q  +      V  H+
Sbjct: 254 IISEEKVDSFNIPIYFSSPQEVEATVERNGYFNLERLECLPLEKSQDTIPQKARAVSYHI 313

Query: 307 RANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPL 349
           RA LE L+KEHFG+ I+++LFD F+KK+++S V+     Y  L
Sbjct: 314 RAGLEYLLKEHFGHEILDELFDSFNKKLEKSEVFQLGLTYSLL 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144541|ref|XP_002325326.1| predicted protein [Populus trichocarpa] gi|222862201|gb|EEE99707.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 230/333 (69%), Gaps = 7/333 (2%)

Query: 10  AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           AM GGDG++SYA+NS  Q H V  +K  I   I++KLDL ++  S+SK   I D+GCSVG
Sbjct: 13  AMNGGDGRFSYAKNSFLQGHSVNASKEKIGEAIAEKLDL-KILLSTSKTIRIVDVGCSVG 71

Query: 70  PNTFNAVQNIIDSVKLKCQSYG---HDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
           PNTF A+QNII+S++ K Q+     + K EFQVFFNDL SNDFN L+ SLP +RQY+AAG
Sbjct: 72  PNTFLAIQNIIESIERKYQAQYLNINQKPEFQVFFNDLTSNDFNTLFSSLPPNRQYFAAG 131

Query: 127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
           VPGSFH RLFP+ SI+FF+    L  LS  P+EL D+NSP++NKGRI+Y   P+EVV AY
Sbjct: 132 VPGSFHGRLFPEGSIHFFYSCIALHILSKAPEELLDKNSPSWNKGRIHYINAPDEVVNAY 191

Query: 187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
           + + AKGIE FL ARA+E+ SGG+  +  P  P GI   +    A  +LL   L+DMAK 
Sbjct: 192 ATQYAKGIEIFLDARAKEMVSGGMAVMSFPANPTGIPYSQTFTGAMFELLESSLLDMAKE 251

Query: 247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE---PLALSAQRQLATNTPTVV 303
           G +SEAQVDSFNLP Y P+ +E+  L+++N  F IEK E   P   ++    ++    +V
Sbjct: 252 GKISEAQVDSFNLPMYVPSLEEMMELVQKNGCFDIEKMELTSPGVHASMTNTSSMGKAIV 311

Query: 304 SHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336
            H+RA +E ++ +HFG+ II++LF+R++KK +E
Sbjct: 312 MHVRAGMERMLIQHFGSEIIDELFNRYAKKFEE 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424403|ref|XP_002281406.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] gi|297737615|emb|CBI26816.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/330 (49%), Positives = 223/330 (67%), Gaps = 5/330 (1%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GGDG +SY  NS FQ   +  ++ +I   I+ KLD   V   SS  F +ADLGCSVGP
Sbjct: 7   MNGGDGPHSYRNNSHFQRQDMNVSRTMIEEAIAKKLD---VKCFSSNPFRLADLGCSVGP 63

Query: 71  NTFNAVQNIIDSVKLK--CQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVP 128
           NTF A+Q+I+++V+ +   Q    +  EFQVFFND V NDFN L+ SLP++R+Y+A GVP
Sbjct: 64  NTFIAMQHIVEAVERRYLAQGLKSEMPEFQVFFNDHVGNDFNTLFASLPTERRYFACGVP 123

Query: 129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA 188
           GSFH RLFP++SI+F   S+ L WLS  P+EL D+NSPA+N+GRI+Y+ GP EV  AY+A
Sbjct: 124 GSFHGRLFPESSIHFMFSSHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHAYAA 183

Query: 189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL 248
           +    +E FL ARA+EL  GG++ +++P LP+GI   +       DLLG  LMDMAK GL
Sbjct: 184 QFEHDMEIFLSARAKELVVGGMIVVLIPALPNGIPASQNPYGVMFDLLGSSLMDMAKEGL 243

Query: 249 LSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRA 308
           +SEAQVDSFNLP +  +P+++  L++RN   +IE+ E +   ++     N      +LRA
Sbjct: 244 ISEAQVDSFNLPIHLASPEQMTELVERNECLTIERMELVNSRSKLVGPINGKECAMYLRA 303

Query: 309 NLEILVKEHFGNGIIEDLFDRFSKKIDESS 338
            LE +  +HFG+GII+ LFDR SKKI ESS
Sbjct: 304 GLEGIFAQHFGSGIIDQLFDRLSKKIMESS 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491489|ref|XP_002277893.2| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780-like [Vitis vinifera]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 230/332 (69%), Gaps = 8/332 (2%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M  GDG +SY+ NS FQ   +  A  I+   I   +D+ +++ S++    +ADLGCSVGP
Sbjct: 16  MKSGDGLHSYSNNSYFQRDIINAAMQIVGEAIVKIVDILKISPSTT--IRVADLGCSVGP 73

Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKL--EFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVP 128
           NTF A++NI+++++LKCQ+ G D    EFQVFFND  SNDFN+L+ SLP + +Y++AGVP
Sbjct: 74  NTFFAMENILEAIELKCQNQGLDSQIPEFQVFFNDQTSNDFNSLFSSLPPNGRYHSAGVP 133

Query: 129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA 188
           GSF++RLFP  S++  H S+ +QWLS  PK++ D++SPA+NKGRIYY+   +EVVEAYSA
Sbjct: 134 GSFYSRLFPNHSLHIVHSSFSIQWLSRVPKKVVDRSSPAWNKGRIYYASAADEVVEAYSA 193

Query: 189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL 248
           + A+ +  FL ARAQE+A GGLM LI P   DGI   + S     D+LG CLMDMA+ G+
Sbjct: 194 QCAEDMARFLQARAQEIADGGLMILIFPARLDGIPHSQFSNNIMFDMLGCCLMDMAQKGI 253

Query: 249 LSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTP----TVVS 304
           +SE +VD FNLP YF + QEL+A+++RN  FSIEK E L  +   Q   +TP     +  
Sbjct: 254 VSEEKVDMFNLPLYFISAQELEAIIERNGCFSIEKMEILHPTITAQSLISTPHKGQAISF 313

Query: 305 HLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336
           H+RA  E L+K HFG  I++ LFD +S+K+++
Sbjct: 314 HIRAATEGLIKAHFGEEILDQLFDSYSRKVED 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424401|ref|XP_002281378.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 221/330 (66%), Gaps = 5/330 (1%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GGDG +SY  NS FQ   +  ++ +I   I+ KLD   V   SS  F +ADLGCSVGP
Sbjct: 7   MNGGDGPHSYRNNSHFQRQDINVSRTMIEEAIAKKLD---VMCFSSNPFRLADLGCSVGP 63

Query: 71  NTFNAVQNIIDSVKLK--CQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVP 128
           NTF A+Q+I+++V+ K   Q    +  EFQVFFND V NDFN L+ SLP++R+Y+A GVP
Sbjct: 64  NTFIAMQHIVEAVERKYLAQGLKSEMPEFQVFFNDHVGNDFNTLFASLPTERRYFACGVP 123

Query: 129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA 188
           GSFH RLFP++SI+F   S+ L WLS  P+EL D+NSPA+N+GRI+Y+ GP EV  AY+A
Sbjct: 124 GSFHGRLFPESSIHFMFSSHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHAYAA 183

Query: 189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL 248
           +  + +E FL ARA+EL  GG++  ++P LP+GI   +       DLLG  LMDMAK GL
Sbjct: 184 QFERDMEIFLSARAKELVVGGMIVFLIPALPNGIPASQNPYCVMFDLLGASLMDMAKEGL 243

Query: 249 LSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRA 308
           +SEAQVDSFNLP +  +P+++  ++ RN   +IE+ E +   ++     N       LRA
Sbjct: 244 ISEAQVDSFNLPIHVASPEQMTEMVDRNECLTIERMELVDSRSKLVGPINGKECAMCLRA 303

Query: 309 NLEILVKEHFGNGIIEDLFDRFSKKIDESS 338
            LE +  +HFG+GII+ LFDR SK+I ESS
Sbjct: 304 GLEGIFTQHFGSGIIDQLFDRLSKQIMESS 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737617|emb|CBI26818.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 221/330 (66%), Gaps = 5/330 (1%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GGDG +SY  NS FQ   +  ++ +I   I+ KLD   V   SS  F +ADLGCSVGP
Sbjct: 1   MNGGDGPHSYRNNSHFQRQDINVSRTMIEEAIAKKLD---VMCFSSNPFRLADLGCSVGP 57

Query: 71  NTFNAVQNIIDSVKLK--CQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVP 128
           NTF A+Q+I+++V+ K   Q    +  EFQVFFND V NDFN L+ SLP++R+Y+A GVP
Sbjct: 58  NTFIAMQHIVEAVERKYLAQGLKSEMPEFQVFFNDHVGNDFNTLFASLPTERRYFACGVP 117

Query: 129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA 188
           GSFH RLFP++SI+F   S+ L WLS  P+EL D+NSPA+N+GRI+Y+ GP EV  AY+A
Sbjct: 118 GSFHGRLFPESSIHFMFSSHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHAYAA 177

Query: 189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL 248
           +  + +E FL ARA+EL  GG++  ++P LP+GI   +       DLLG  LMDMAK GL
Sbjct: 178 QFERDMEIFLSARAKELVVGGMIVFLIPALPNGIPASQNPYCVMFDLLGASLMDMAKEGL 237

Query: 249 LSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRA 308
           +SEAQVDSFNLP +  +P+++  ++ RN   +IE+ E +   ++     N       LRA
Sbjct: 238 ISEAQVDSFNLPIHVASPEQMTEMVDRNECLTIERMELVDSRSKLVGPINGKECAMCLRA 297

Query: 309 NLEILVKEHFGNGIIEDLFDRFSKKIDESS 338
            LE +  +HFG+GII+ LFDR SK+I ESS
Sbjct: 298 GLEGIFTQHFGSGIIDQLFDRLSKQIMESS 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:504956193	351	AT1G15125 [Arabidopsis thalian	0.936	0.960	0.475	6.3e-76
TAIR|locus:2166640	361	AT5G38780 [Arabidopsis thalian	0.963	0.961	0.415	2.7e-68
TAIR|locus:2144461	359	AT5G38100 [Arabidopsis thalian	0.972	0.974	0.421	6.5e-67
TAIR|locus:2200186	363	AT1G68040 [Arabidopsis thalian	0.908	0.900	0.406	1.2e-63
TAIR|locus:2082157	348	AT3G44840 [Arabidopsis thalian	0.952	0.985	0.386	1e-59
TAIR|locus:2082117	379	AT3G44870 "AT3G44870" [Arabido	0.952	0.905	0.385	2.5e-58
TAIR|locus:2082112	348	FAMT "farnesoic acid carboxyl-	0.958	0.991	0.387	3.2e-58
TAIR|locus:2033389	352	AT1G66720 [Arabidopsis thalian	0.941	0.963	0.375	2.3e-55
TAIR|locus:2033409	353	PXMT1 [Arabidopsis thaliana (t	0.947	0.966	0.362	4.9e-53
TAIR|locus:2033414	353	AT1G66690 "AT1G66690" [Arabido	0.947	0.966	0.359	1.3e-52

TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 163/343 (47%), Positives = 220/343 (64%)

Query:    11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
             M GGDG  SYARNS +Q   +E A+A++   I+ +LD+   + SS   F+IAD GCS GP
Sbjct:     1 MNGGDGASSYARNSSYQRGAIEAAEALLRNEINARLDITNHSFSS---FTIADFGCSSGP 57

Query:    71 NTFNAVQNIIDSVKLKCQSYGHDKL--EFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVP 128
             NT  AV  II ++  K  S   +    +FQVFFND+   DFNAL+  LP  R Y+ AGVP
Sbjct:    58 NTVIAVDIIIQALYHKFTSSLPNTTTPQFQVFFNDVSHTDFNALFALLPPQRPYFVAGVP 117

Query:   129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA 188
             GSF+  LFPKA +N  + S  L WLS  P EL D +SPAYN+GRI+Y+    EV +AYS+
Sbjct:   118 GSFYGNLFPKAHLNLAYSSCALCWLSDLPSELTDTSSPAYNRGRIHYTGASAEVAQAYSS 177

Query:   189 ESAKGIESFLLARAQELASGGLMALIVPCLPDG-ISPGECSVLASADLLGDCLMDMAKMG 247
             +  K I+ FL AR+QELA  GLMALIVP +PDG +   E S  +  DLLG CLMDMAK G
Sbjct:   178 QYKKDIKLFLHARSQELAENGLMALIVPGVPDGFLDCQEASTGSEFDLLGSCLMDMAKEG 237

Query:   248 LLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLR 307
             ++ E +V+SFNLP Y+ TP+EL+ +++ N    I+K E L     +    +  + V +LR
Sbjct:   238 IIEEEEVNSFNLPIYYTTPKELEDIIRSNGELKIDKMETLGSMDAQDTMPDLESRVLYLR 297

Query:   308 ANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLV 350
             A LE LV+ HFG+ I++DLFDR++ K+  SS   Q   +K ++
Sbjct:   298 AVLEGLVRTHFGHQILDDLFDRYALKLAHSSFILQPQTHKSIM 340

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 150/361 (41%), Positives = 224/361 (62%)

Query:     5 SVSSQA--MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIA 62
             S SSQ+  M GGD Q+SY  NS +Q  G++  +    + I + LDL  +  + S  F+IA
Sbjct:     2 STSSQSYPMSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLS-TFTIA 60

Query:    63 DLGCSVGPNTFNAVQNIIDSVKLK-CQSYGHDK----LEFQVFFNDLVSNDFNALYKSLP 117
             D GCS+GPNTF+AVQNIID VKLK  +    D     LEFQV+FNDL +NDFN L+++ P
Sbjct:    61 DFGCSIGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQP 120

Query:   118 --SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
               S ++Y++ GVPGSF+ R+ P+ SI+  + S+   WLS  P+E+ D+NS A+NK  I+ 
Sbjct:   121 PSSKQEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHC 180

Query:   176 SRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADL 235
             +    EV EAY  +  K +  FL ARA+EL  GGLM  +  CLPDG++  E       D 
Sbjct:   181 NNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDT 240

Query:   236 LGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR-Q 294
             +GDCL DMA +G+ +E +++ FNLP YFP   ELK  +++N  F+IE  E ++   +  Q
Sbjct:   241 IGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQ 300

Query:   295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVI 354
             L+ N   + S  RA L  +++ HFG  ++++LF +F+KK+ E  +  +    K +V +++
Sbjct:   301 LSNNF--ITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEHPIDFE-KCKKQMVYHIV 357

Query:   355 I 355
             +
Sbjct:   358 L 358

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2144461 AT5G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 152/361 (42%), Positives = 211/361 (58%)

Query:     3 SESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIA 62
             S S     M  G  Q+SY  NS +Q   + +A     R I +KLDL    SS    F IA
Sbjct:     2 STSSHMYPMSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQ--LSSDFGTFRIA 59

Query:    63 DLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDK----LEFQVFFNDLVSNDFNALYKSLP- 117
             D GCS+GPNTF+  Q+IID+VK K      +     LEFQVFFND  +NDFN L+++ P 
Sbjct:    60 DFGCSIGPNTFHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPL 119

Query:   118 -SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS 176
               +R+Y++ GVPGSF+ R+ P+ SI+  H SY   WLS  P  + D+ S A+NK  I  +
Sbjct:   120 SPEREYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCN 179

Query:   177 RGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLL 236
                 EV +AY  +  K +E FL ARA+EL  GGLM +I  CLPDG+S  E       D +
Sbjct:   180 NLLEEVTKAYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTI 239

Query:   237 GDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLA 296
             GDCLMDMAK G+ SE ++D F+LP YFP   ELK  +++N SF+IE  E  +   + +  
Sbjct:   240 GDCLMDMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPL 299

Query:   297 TNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIIL 356
             TN   + S  RA L  ++++HFG+G++++LF R +KK+    +     + K  V   I+L
Sbjct:   300 TND-FITSTFRAFLTTIIEKHFGDGVVDELFYRLAKKLSNHPI--DFEMRKKQVVYCIVL 356

Query:   357 K 357
             K
Sbjct:   357 K 357

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 135/332 (40%), Positives = 197/332 (59%)

Query:     7 SSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGC 66
             +S  M GGDG  SY++NS  Q       K  I++++ +KL+   + SS S  F IADLGC
Sbjct:     9 NSLPMSGGDGPNSYSKNSHLQRKTTSLLKEKIDKLVLEKLNAKTLISSDSNTFRIADLGC 68

Query:    67 SVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
             + GPNTF  V NII S++   +     K EF VFFNDL  NDFN L+ SLP DR Y A G
Sbjct:    69 ATGPNTFFLVDNIIKSIETSLRKSNSSKPEFLVFFNDLPQNDFNTLFTSLPQDRSYLAVG 128

Query:   127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
             VPGSF+ R+ P++S++         WLSS PKE+ D++S A+NKG+++YS   +EVV+AY
Sbjct:   129 VPGSFYGRVLPQSSVHIVVTMGATHWLSSVPKEVLDKSSKAWNKGKVHYSNAADEVVKAY 188

Query:   187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
               +  + +E FL ARA E+ SGGL+ + +  +P G+     +       + D L  M   
Sbjct:   189 RDQFGRDMEKFLEARATEIVSGGLLVVGMCGIPKGMPFSNLADSIMYTSMADVLTQMHSE 248

Query:   247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSH- 305
             GL+SE QVD+FN+P Y  TP+E+  L+ +N  F++E  E +  +A  +  TN   V  H 
Sbjct:   249 GLISEEQVDTFNIPIYSATPEEVTVLVVKNGCFTVESMELMDPTAWLKRPTNVEDV-RHW 307

Query:   306 ---LRANLEILVKEHFGNGIIEDLFDRFSKKI 334
                ++A +  L   HFG  +++D+FDR + K+
Sbjct:   308 MVCIKATMGSLFINHFGEHLLDDVFDRLTAKL 339

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2082157 AT3G44840 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 136/352 (38%), Positives = 212/352 (60%)

Query:     7 SSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGC 66
             +S  M+GG+G  SY ++S++Q   +E A   IN  IS KL+++     +S + +IAD GC
Sbjct:     3 TSFTMIGGEGPESYRQHSKYQGGLLEAATEKINEAISTKLNIDL----ASNLVNIADFGC 58

Query:    67 SVGPNTFNAVQNIIDSVKLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA 125
             S GPNTF AVQ IID+V+ K Q   + +++EFQVFFND  +NDFN L+K+LP  R+Y+A 
Sbjct:    59 STGPNTFRAVQTIIDAVEHKYQQENNLEEIEFQVFFNDSSNNDFNTLFKTLPPARKYFAT 118

Query:   126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEA 185
             GVP SF  R+ P++S++    SY L +LS  PK++ D +S A+NK  I+ +    EVV A
Sbjct:   119 GVPASFFGRVLPRSSLHVGVSSYSLHFLSKIPKKIKDCDSHAWNKD-IHCTGFSKEVVRA 177

Query:   186 YSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAK 245
             Y  +    +ESFL ARAQEL SGGL+ L+  CLP+G+   E       D +G  L D+AK
Sbjct:   178 YLDQYKIDMESFLTARAQELVSGGLLFLLGSCLPNGVQMSETLNGMMIDCIGSSLNDIAK 237

Query:   246 MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSH 305
              GL+ + ++D+F LP Y     E+K +++ N  ++IE+F+ ++     ++  +   +   
Sbjct:   238 QGLIDQEKLDTFKLPIYVAYAGEIKQIIEDNVYYTIERFDIIS-QENEEIPLDPEFLTVS 296

Query:   306 LRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
              +  +  +V  HFG  ++E  F+    K  E  +  Q +  KP ++ +I+LK
Sbjct:   297 FKVTVGGIVASHFGQHVMEKTFEVVKTKTQE--MLPQLANAKPGMQYLIVLK 346

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2082117 AT3G44870 "AT3G44870" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 136/353 (38%), Positives = 206/353 (58%)

Query:     7 SSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGC 66
             +S  M+GG+G  SY  +S++Q   VE AK  IN  IS KLD++     +S + +IAD GC
Sbjct:     3 TSFTMIGGEGPNSYRDHSKYQGALVEAAKEKINEAISTKLDID----FTSNLVNIADFGC 58

Query:    67 SVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
             S GPNTF AVQ +ID+V+ K +      +EFQVFFND  +NDFN L+K+LP  R Y+A+G
Sbjct:    59 SSGPNTFTAVQTLIDAVENKYKK--ESNIEFQVFFNDSSNNDFNTLFKTLPPARLYFASG 116

Query:   127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
             VPGSF  R+ P+ S++    +Y L ++S  PKE+ D++SP +NK  I+ S    EV + Y
Sbjct:   117 VPGSFFGRVLPRNSLHLGVSAYSLHFISKIPKEVKDRDSPVWNKD-IHCSGSSKEVAKLY 175

Query:   187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
               +    + SFL ARAQEL SGGL+ L+  C P+G+   E       D +G  L ++A  
Sbjct:   176 LGQYKIDVGSFLNARAQELVSGGLLLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQ 235

Query:   247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHL 306
             GL+ + ++D+F LP Y P   ELK +++ N  F+IE FE + + A+ +   +   +    
Sbjct:   236 GLIDQQKLDTFKLPIYAPQADELKQIIEDNGCFTIEVFENI-IHAKGEYPLDPEFLTVSF 294

Query:   307 RANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359
             +  +   V   FG   +E  F+   +K  E  +  Q +  KP ++ +I+L+ N
Sbjct:   295 KVTVGGSVASLFGQDGMEKTFELVKEKTQE--MLPQIAKAKPGMQYLIVLRRN 345

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2082112 FAMT "farnesoic acid carboxyl-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 137/354 (38%), Positives = 207/354 (58%)

Query:     7 SSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGC 66
             +S  M+GG+G  SY  +S++Q   V  AK  IN  IS KLD++     +S + +IAD GC
Sbjct:     3 TSFTMIGGEGPNSYREHSKYQGALVIAAKEKINEAISTKLDID----FTSNLVNIADFGC 58

Query:    67 SVGPNTFNAVQNIIDSVKLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA 125
             S GPNTF AVQ +ID+V+ K +   + + +EFQVFFND  +NDFN L+K+LP  R Y+A+
Sbjct:    59 SSGPNTFTAVQTLIDAVENKYKKESNIEGIEFQVFFNDSSNNDFNTLFKTLPPARLYFAS 118

Query:   126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEA 185
             GVPGSF  R+ PK S++    SY L ++S  PKE+ D++S  +NK  I+ S    EVV+ 
Sbjct:   119 GVPGSFFGRVLPKNSLHVGVSSYSLHFVSKVPKEIKDRDSLVWNKD-IHCSGSSKEVVKL 177

Query:   186 YSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAK 245
             Y  +    + SFL ARAQEL SGGL+ L+  C P G+   E       D +G  L ++A 
Sbjct:   178 YLGQYKIDVGSFLTARAQELVSGGLLLLLGSCRPTGVQMFETVEGMMIDFIGSSLNEIAN 237

Query:   246 MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSH 305
              GL+ + ++D+F LP Y P   ELK +++ N  F+IE FE ++  A+ +   +   + S 
Sbjct:   238 QGLIDQQKLDTFKLPIYAPNVDELKQIIEDNKCFTIEAFEKIS-HAKGEYPLDPEYLTSA 296

Query:   306 LRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359
              +  +   V   FG   +E  ++   +K  E  +  Q +  KP ++ +I+L+ N
Sbjct:   297 FKVTVGGSVASLFGQDGMEKTYELVKEKTQE--MLPQIAKAKPGMQYLIVLRRN 348

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019010 "farnesoic acid O-methyltransferase activity" evidence=IDA

TAIR|locus:2033389 AT1G66720 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 133/354 (37%), Positives = 208/354 (58%)

Query:    11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
             M+GG+G  SY ++S +Q   ++ AK  IN VIS  L LN +++     FS+AD GC+ GP
Sbjct:     9 MVGGEGPESYKQHSSYQRDLLKAAKDKINAVISTNLSLNLISNR----FSVADFGCASGP 64

Query:    71 NTFNAVQNIIDSVKLK-CQSYGH---DKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
             NTF AVQNIID+V+ K  +  G    D +EFQV FNDL +NDFN L++ LPS R+YY+A 
Sbjct:    65 NTFVAVQNIIDAVEEKYLRETGQNPDDNIEFQVLFNDLSNNDFNTLFQGLPSGRRYYSAA 124

Query:   127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
             +PGSF +R+ PK SI+    +Y  Q+ S  PK ++D+NSP +N+  ++ +   N+V +AY
Sbjct:   125 IPGSFFDRVLPKHSIHIGVMNYAFQFTSKIPKGISDRNSPLWNRD-MHCTGFNNKVKKAY 183

Query:   187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
               + +   ++ L ARA+EL   GLM L+  CL DGI   E       DL+G  L D+A+ 
Sbjct:   184 LDQFSLDSKNILDARAEELVPEGLMLLLGSCLRDGIKMSETYRGIVLDLIGASLNDLAQQ 243

Query:   247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVS-H 305
             G++ + +V+SFN+  Y     EL+ +++ N  F+IE FE +       L    P +++  
Sbjct:   244 GVIEKDKVESFNITLYIAEEGELRQIIEENGKFTIEAFEDIIQPNGESL---DPKILAVS 300

Query:   306 LRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359
             L++    ++  HFG   +   F+    K  +   +S+    KP ++ +I+L+ N
Sbjct:   301 LKSAFGGILSAHFGAEAMMKAFELVEAKAHQE--FSRLQNAKPTMQYLIVLRKN 352

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2033409 PXMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 128/353 (36%), Positives = 194/353 (54%)

Query:    11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
             M+GGDG  SY + S +Q   +E  K  + + IS  LDL+ +++     F +AD GC+ GP
Sbjct:     9 MIGGDGPESYNQQSSYQRALLEATKDKMTKAISANLDLDLISNR----FIVADFGCASGP 64

Query:    71 NTFNAVQNIIDSVKLKCQ-SYGH---DKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
             NTF AVQNIID+V+ K +   G    D +EFQV FND   NDFN L+++LP  R+Y++AG
Sbjct:    65 NTFVAVQNIIDAVEEKYRRETGQNPADNIEFQVLFNDFSLNDFNTLFQTLPPGRRYFSAG 124

Query:   127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
             VPGSF  R+ PK S +    SY   + S  PK + D++SP +NK        P  V +AY
Sbjct:   125 VPGSFFERVLPKESFHIGVMSYAFHFTSKIPKGIMDRDSPLWNKDMQCTGFNP-AVKKAY 183

Query:   187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
               + +   +  L ARA+EL  GGLM L+  CL DG+   E       D +G+ L D+AK 
Sbjct:   184 LDQYSIDTKILLDARAEELVPGGLMLLLGSCLRDGVKMSETPKGTVMDFIGESLSDLAKQ 243

Query:   247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHL 306
             G+  + +VD+F    YF    E++ +++ N  F+IE FE + + A+ +   +  T+    
Sbjct:   244 GVTEQEKVDTFRTSIYFAEQGEIRQIIEENGKFTIEAFEDI-IHAKNEFPFDPKTLAISF 302

Query:   307 RANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359
             +A     +  HFG  ++   F+    K  E    S+    KP ++ +I+L+ N
Sbjct:   303 KAFYGAFISAHFGVEVMRKAFELVEVKAREQ--ISRLHNSKPGMQYLIVLRKN 353

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

TAIR|locus:2033414 AT1G66690 "AT1G66690" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 127/353 (35%), Positives = 196/353 (55%)

Query:    11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
             M+GG G  SY + S +Q   +E AK  +   IS  LDL+ +++     F +AD GC+ GP
Sbjct:     9 MIGGYGPESYNQQSSYQRALLEAAKDKMTEAISANLDLDLISNR----FIVADFGCASGP 64

Query:    71 NTFNAVQNIIDSVKLK-CQSYGH---DKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126
             NTF AVQNIID+V+ K  +  G    D +EFQV FNDL  NDFN L+++LP  R+Y++AG
Sbjct:    65 NTFVAVQNIIDAVEEKYLRETGQNPEDNIEFQVLFNDLRINDFNTLFQTLPPGRRYFSAG 124

Query:   127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186
             VPGSF NR+ PK S +    SY   + S  PK + D++SP +NK        P  V +AY
Sbjct:   125 VPGSFFNRVLPKQSFHIAVMSYAFLFTSKIPKGIMDRDSPLWNKDMQCTGFNP-AVKKAY 183

Query:   187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM 246
               + +   ++ L ARA+EL  GGLM L+  C+ DG+   E       D +G+ L D+A+ 
Sbjct:   184 LEQYSIDTKNLLDARAEELMPGGLMLLLGSCMRDGVKMSETLKGTVMDFIGESLNDLAQK 243

Query:   247 GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHL 306
             G+  + +VD+F    YF    E++ +++ N  F+IE FE + + ++ +   +  T+    
Sbjct:   244 GVTEQEKVDTFKTSIYFAEQGEIRQIIEENGKFTIEAFEDI-IHSKNEFPLDPKTLAISF 302

Query:   307 RANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359
             +A     +  HFG  ++   F+    K  E    S+    KP ++ +I+L+ N
Sbjct:   303 KALYGAFISAHFGIEVMRKAFELVEVKAREQ--ISRLHKVKPGMQYLIVLRKN 353

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-112
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	9e-68

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  330 bits (848), Expect = e-112
 Identities = 142/337 (42%), Positives = 187/337 (55%), Gaps = 25/337 (7%)

Query: 38  INRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYG-HDKLE 96
           +   IS+ L  N           IADLGCS GPNTF AV NIID+V+ K Q     +  E
Sbjct: 1   LEEAISELLLRN----LFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPE 56

Query: 97  FQVFFNDLVSNDFNALYKSLPS----DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQW 152
           FQVFFNDL SNDFN L+K LP      R Y+ +GVPGSF+ RLFP+ S++F H SY L W
Sbjct: 57  FQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHW 116

Query: 153 LSSTPKELNDQNSPAYNKGRIYYSR-GPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211
           LS  PK L D+ SPA+NKG IY S   P EV +AY  +  K    FL ARA+EL SGGLM
Sbjct: 117 LSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLM 176

Query: 212 ALIVPCLPDG--ISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQEL 269
            L     P                DLLGD L D+   GL+ E ++DSFN+P Y P+P+E+
Sbjct: 177 VLTFLGRPSVDPSETECGIFW---DLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEV 233

Query: 270 KALLKRNASFSIEKFE----PLAL----SAQRQLATNTP-TVVSHLRANLEILVKEHFGN 320
           K ++++  SF+IE+ E    P        +  +        V S +RA +E ++  HFG 
Sbjct: 234 KEIIEKEGSFTIERLEIIKHPNGEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGE 293

Query: 321 GIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357
            I++ LFDR++KK+ E     +    K  +  V+ L 
Sbjct: 294 DIMDKLFDRYAKKLSEHL-SKELQNAKKTINVVVSLS 329

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  217 bits (555), Expect = 9e-68
 Identities = 128/371 (34%), Positives = 192/371 (51%), Gaps = 45/371 (12%)

Query: 11  MMGGDGQYSYARNSEFQS-HGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           M GG G+ SYA NS+ Q+ H    A+++++ ++ + LD   + SS    F+  DLGCS G
Sbjct: 21  MKGGKGEGSYANNSQAQALH----ARSMLH-LLEETLDNVHLNSSPEVPFTAVDLGCSSG 75

Query: 70  PNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------------ 117
            NT + +  I+  +  + +S G D  EF  FF+DL SNDFN L++ LP            
Sbjct: 76  SNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEEC 135

Query: 118 ----SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRI 173
                 R Y+AAGVPGSF+ RLFP  SI+ FH ++ L WLS  P+ + D+ S AYNKGR+
Sbjct: 136 LAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRV 195

Query: 174 YYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASA 233
           +          AY  +    +  FL ARAQE+  GG M L+  CL  G +  + +    A
Sbjct: 196 FIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV--CL--GRTSVDPTDQGGA 251

Query: 234 DLL-----GDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE--- 285
            LL      D   D+ + GL++  + DSFN+P Y P+ Q+ K +++ N SF+I+K E   
Sbjct: 252 GLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311

Query: 286 ---PLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQ 342
              PL ++     A     + +  R+   +LV  H G  +  +LF R  ++         
Sbjct: 312 GGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERR--------A 363

Query: 343 TSVYKPLVENV 353
           TS  K L+E +
Sbjct: 364 TSHAKELLEKL 374

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.48
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.46
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.25
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.12
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.98
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.87
PLN02244	340	tocopherol O-methyltransferase	98.75
PLN02336	475	phosphoethanolamine N-methyltransferase	98.74
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.74
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.69
PRK08317	241	hypothetical protein; Provisional	98.68
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.66
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.64
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.58
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.58
PRK11207	197	tellurite resistance protein TehB; Provisional	98.55
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.54
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.45
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.45
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.43
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.42
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.41
PRK12335	287	tellurite resistance protein TehB; Provisional	98.4
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.33
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.33
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.31
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.31
PLN02490	340	MPBQ/MSBQ methyltransferase	98.28
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.28
PRK06202	232	hypothetical protein; Provisional	98.26
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.23
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.18
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.1
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.09
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.0
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.0
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.99
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.97
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.95
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.94
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.93
KOG2940	325	consensus Predicted methyltransferase [General fun	97.91
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.89
PRK06922	677	hypothetical protein; Provisional	97.86
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.84
PRK05785	226	hypothetical protein; Provisional	97.84
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.81
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.8
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.79
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.76
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.74
PLN02336	475	phosphoethanolamine N-methyltransferase	97.71
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.7
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.66
TIGR03438	301	probable methyltransferase. This model represents	97.64
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.64
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.6
COG4123	248	Predicted O-methyltransferase [General function pr	97.53
KOG3010	261	consensus Methyltransferase [General function pred	97.49
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.47
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.47
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.44
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.43
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.42
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.39
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.39
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.38
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.38
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.36
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.34
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.32
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.32
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.31
KOG2361	264	consensus Predicted methyltransferase [General fun	97.3
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.28
PRK04266	226	fibrillarin; Provisional	97.28
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.27
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.2
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.2
PTZ00146	293	fibrillarin; Provisional	97.19
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.17
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.14
TIGR00438	188	rrmJ cell division protein FtsJ.	97.11
PRK14967	223	putative methyltransferase; Provisional	97.1
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	96.99
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.88
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.86
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.84
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.72
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.71
PRK00811	283	spermidine synthase; Provisional	96.69
PRK14968	188	putative methyltransferase; Provisional	96.67
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.65
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.47
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.45
PLN03075	296	nicotianamine synthase; Provisional	96.42
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.41
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.34
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.32
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.29
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.28
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.27
PHA03411	279	putative methyltransferase; Provisional	96.25
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.2
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.1
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.07
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	95.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.78
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.78
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.72
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.53
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	95.47
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.47
PRK04457	262	spermidine synthase; Provisional	95.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	95.42
KOG4300	252	consensus Predicted methyltransferase [General fun	95.41
KOG2904	328	consensus Predicted methyltransferase [General fun	95.38
PRK07402	196	precorrin-6B methylase; Provisional	95.32
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.24
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.15
PRK03612	521	spermidine synthase; Provisional	94.96
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.83
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.79
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.57
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.39
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.34
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.19
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	94.16
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	94.07
KOG2899	288	consensus Predicted methyltransferase [General fun	93.7
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	93.51
KOG1331	293	consensus Predicted methyltransferase [General fun	93.39
PLN02366	308	spermidine synthase	93.34
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	92.88
PRK01581	374	speE spermidine synthase; Validated	92.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.7
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	92.43
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	92.41
PLN02672	1082	methionine S-methyltransferase	91.63
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	91.41
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	91.12
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	91.02
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	89.83
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	89.76
COG2890	280	HemK Methylase of polypeptide chain release factor	89.64
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	89.05
COG4976	287	Predicted methyltransferase (contains TPR repeat)	88.53
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	88.43
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	88.16
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	87.95
PHA03412	241	putative methyltransferase; Provisional	87.21
KOG1271	227	consensus Methyltransferases [General function pre	86.98
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	86.0
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	85.13
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	83.13
PRK13256	226	thiopurine S-methyltransferase; Reviewed	80.29

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=9.8e-102  Score=762.81  Aligned_cols=347  Identities=32%  Similarity=0.523  Sum_probs=314.1

Q ss_pred             CcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHH
Q 018119            5 SVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVK   84 (360)
Q Consensus         5 ~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~   84 (360)
                      ..++|||+||+|++||++||.+|+.++..++|+|+++|+++. .+..   +.++++|||||||+|+||+.+|+.||++|+
T Consensus        15 ~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~   90 (386)
T PLN02668         15 LEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS---PEVPFTAVDLGCSSGSNTIHIIDVIVKHMS   90 (386)
T ss_pred             eccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC---CCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998853 2211   236899999999999999999999999999


Q ss_pred             HHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC----------------CcceEeecCCccccccCCCCceeEEEecc
Q 018119           85 LKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD----------------RQYYAAGVPGSFHNRLFPKASINFFHCSY  148 (360)
Q Consensus        85 ~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~----------------~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~  148 (360)
                      ++|++.+.++|||||||||||+||||+||++||+.                ++||++|||||||+||||++|+||+||++
T Consensus        91 ~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~  170 (386)
T PLN02668         91 KRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAF  170 (386)
T ss_pred             HHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeec
Confidence            99998777789999999999999999999999852                24999999999999999999999999999


Q ss_pred             cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCc
Q 018119          149 GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECS  228 (360)
Q Consensus       149 alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~  228 (360)
                      ||||||++|+.+.|+.+++||||+|||++++|+|.+||++||++||..||++||+||+|||+||++++||++.++..+..
T Consensus       171 slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~  250 (386)
T PLN02668        171 SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGG  250 (386)
T ss_pred             cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877765544


Q ss_pred             hhhHHHH-HHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccch--hhhcC----CChhH
Q 018119          229 VLASADL-LGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSA--QRQLA----TNTPT  301 (360)
Q Consensus       229 ~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~--~~~~~----~~~~~  301 (360)
                      .+.+|+. +.++|+|||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++...  +.+.+    ..++.
T Consensus       251 ~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~  330 (386)
T PLN02668        251 AGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRA  330 (386)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHH
Confidence            6677877 99999999999999999999999999999999999999999999999999986421  11111    23568


Q ss_pred             HHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEE
Q 018119          302 VVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK  357 (360)
Q Consensus       302 ~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (360)
                      +++++||++||+|++|||++|+|+||+||+++++++++..  .++.++++++++|.
T Consensus       331 ~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~--~~~~~~~~~~~sL~  384 (386)
T PLN02668        331 MANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKEL--LEKLQFFHIVASLS  384 (386)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh--cccCceEEEEEEEe
Confidence            9999999999999999999999999999999999998864  25678888888885

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.4e-95  Score=713.89  Aligned_cols=316  Identities=45%  Similarity=0.726  Sum_probs=264.7

Q ss_pred             HHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcC-CCCccceEEecCCCCCchHHHHhhC
Q 018119           38 INRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYG-HDKLEFQVFFNDLVSNDFNALYKSL  116 (360)
Q Consensus        38 l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~-~~~p~~~v~~nDlp~NDFn~lF~~l  116 (360)
                      |++||++++... .   .+++++|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++|
T Consensus         1 ~~~ai~~~~~~~-~---~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l   76 (334)
T PF03492_consen    1 LEEAIKELYNSS-N---NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSL   76 (334)
T ss_dssp             -HHHHHHHHHST-T---TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred             ChHHHHHHHhcC-C---CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhC
Confidence            578999876422 2   5889999999999999999999999999999999876 6789999999999999999999999


Q ss_pred             CCC-------CcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec-CCCHHHHHHHHH
Q 018119          117 PSD-------RQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS-RGPNEVVEAYSA  188 (360)
Q Consensus       117 ~~~-------~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~-~~~~~v~~ay~~  188 (360)
                      |+.       ++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++|.+||++
T Consensus        77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~  156 (334)
T PF03492_consen   77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK  156 (334)
T ss_dssp             HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred             hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence            975       799999999999999999999999999999999999999999999999999999999 688899999999


Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHH
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQE  268 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE  268 (360)
                      ||++||.+||++||+||+|||+||++++||++.++.. .+.+.+|++|+++|+|||.||+|++|++|+||+|+|+||.+|
T Consensus       157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE  235 (334)
T PF03492_consen  157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSS-TGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE  235 (334)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTS-TTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred             HHHHHHHHHHHHhhheeccCcEEEEEEeecccccccc-CCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence            9999999999999999999999999999999965543 345678999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceeEEEEEEeccchhhh---------cCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcch
Q 018119          269 LKALLKRNASFSIEKFEPLALSAQRQ---------LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSV  339 (360)
Q Consensus       269 ~~~~ie~~g~F~I~~~e~~~~~~~~~---------~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~  339 (360)
                      ++++|+++|+|+|+++|.++...+..         ....++.+++++||++||+|++|||++|+|+||+||+++++++++
T Consensus       236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~  315 (334)
T PF03492_consen  236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE  315 (334)
T ss_dssp             HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986432211         113578999999999999999999999999999999999999998


Q ss_pred             hhccccCCCcEEEEEEEEec
Q 018119          340 YSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       340 ~~~~~~~~~~~~~~~~L~r~  359 (360)
                      .. +...+++++++++|+||
T Consensus       316 ~~-~~~~~~~~~i~~~L~Rk  334 (334)
T PF03492_consen  316 KE-KSRNMKFVNIVVSLTRK  334 (334)
T ss_dssp             HT-HTT-BEEEEEEEEEEE-
T ss_pred             Hh-hccCCCcEEEEEEEeeC
Confidence            75 33568899999999997

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=9.9e-12  Score=117.14  Aligned_cols=250  Identities=14%  Similarity=0.173  Sum_probs=146.2

Q ss_pred             CCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCc
Q 018119           16 GQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKL   95 (360)
Q Consensus        16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p   95 (360)
                      ....|.+++..|.+.....   +    .. +.       .....+|+|+|||+|..+..+.+.               .|
T Consensus         5 ~~~~Y~~~~~~~~~~~~~l---l----~~-~~-------~~~~~~vLDiGcG~G~~~~~la~~---------------~~   54 (258)
T PRK01683          5 NPSLYLKFEDERTRPARDL---L----AR-VP-------LENPRYVVDLGCGPGNSTELLVER---------------WP   54 (258)
T ss_pred             CHHHHHHHHHHhhcHHHHH---H----hh-CC-------CcCCCEEEEEcccCCHHHHHHHHH---------------CC
Confidence            3457999998887665432   2    11 11       133579999999999988765332               13


Q ss_pred             cceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceee
Q 018119           96 EFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY  175 (360)
Q Consensus        96 ~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~  175 (360)
                      .-+|+-.|+.. +.-...+...+ +--|..+.   +. .+.|++++|+++|+.++||+..                    
T Consensus        55 ~~~v~gvD~s~-~~i~~a~~~~~-~~~~~~~d---~~-~~~~~~~fD~v~~~~~l~~~~d--------------------  108 (258)
T PRK01683         55 AARITGIDSSP-AMLAEARSRLP-DCQFVEAD---IA-SWQPPQALDLIFANASLQWLPD--------------------  108 (258)
T ss_pred             CCEEEEEECCH-HHHHHHHHhCC-CCeEEECc---hh-ccCCCCCccEEEEccChhhCCC--------------------
Confidence            35677777643 22222222111 11133332   22 3457789999999999999643                    


Q ss_pred             cCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhc
Q 018119          176 SRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVD  255 (360)
Q Consensus       176 ~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d  255 (360)
                                        ...+|+.-.+-|+|||.+++.+.+....         ..+.    .++++.....-. ..+.
T Consensus       109 ------------------~~~~l~~~~~~LkpgG~~~~~~~~~~~~---------~~~~----~~~~~~~~~~w~-~~~~  156 (258)
T PRK01683        109 ------------------HLELFPRLVSLLAPGGVLAVQMPDNLDE---------PSHV----LMREVAENGPWE-QNLP  156 (258)
T ss_pred             ------------------HHHHHHHHHHhcCCCcEEEEECCCCCCC---------HHHH----HHHHHHccCchH-HHhc
Confidence                              2335667778999999999986442211         0111    122222211110 1111


Q ss_pred             -ccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhh-hHHHHhhhchhHHHHHHHHHHHH
Q 018119          256 -SFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANL-EILVKEHFGNGIIEDLFDRFSKK  333 (360)
Q Consensus       256 -~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~-e~~l~~hfg~~i~delf~r~~~~  333 (360)
                       .-..+.+.|+.+++...+...| +.++..+... ...+   .+.+.+..|+++.. .+++ .+++++..+++.+.|.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~  230 (258)
T PRK01683        157 DRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YHPM---PSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLAR  230 (258)
T ss_pred             cccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-eeec---CCchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHH
Confidence             1112456789999999999987 5665544321 1222   23567888999764 5665 689999999999999999


Q ss_pred             HHhcchhhccc-cCCCcEEEEEEEEec
Q 018119          334 IDESSVYSQTS-VYKPLVENVIILKHN  359 (360)
Q Consensus       334 ~~~~~~~~~~~-~~~~~~~~~~~L~r~  359 (360)
                      +.+....-.+. -...+.-++++-+|+
T Consensus       231 ~~~~~~~~~~g~~~~~~~~~~~~~~~~  257 (258)
T PRK01683        231 IAEAYPLQADGKVLLAFPRLFIVARRK  257 (258)
T ss_pred             HHHHCCCCCCCcEEcccceEEEEEEec
Confidence            98773210011 123455566666664

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.46  E-value=8.8e-12  Score=117.65  Aligned_cols=227  Identities=17%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             CchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCcc
Q 018119           17 QYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLE   96 (360)
Q Consensus        17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~   96 (360)
                      ...|.+++..|.+.....+..        +.       .....+|+|+|||+|..+..+..        +       .|.
T Consensus         4 ~~~y~~~~~~~~~~~~~ll~~--------l~-------~~~~~~vLDlGcG~G~~~~~l~~--------~-------~p~   53 (255)
T PRK14103          4 PDVYLAFADHRGRPFYDLLAR--------VG-------AERARRVVDLGCGPGNLTRYLAR--------R-------WPG   53 (255)
T ss_pred             HHHHHHHHhHhhCHHHHHHHh--------CC-------CCCCCEEEEEcCCCCHHHHHHHH--------H-------CCC
Confidence            357999999998766532222        11       13457999999999977664422        1       133


Q ss_pred             ceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec
Q 018119           97 FQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS  176 (360)
Q Consensus        97 ~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~  176 (360)
                      .+|+-.|+- -+.-...+.-   .--|..   +.+ ..+.|.+++|+|+|+.++||+..                     
T Consensus        54 ~~v~gvD~s-~~~~~~a~~~---~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d---------------------  104 (255)
T PRK14103         54 AVIEALDSS-PEMVAAARER---GVDART---GDV-RDWKPKPDTDVVVSNAALQWVPE---------------------  104 (255)
T ss_pred             CEEEEEECC-HHHHHHHHhc---CCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCC---------------------
Confidence            567777763 2333333221   112333   233 34567789999999999999643                     


Q ss_pred             CCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhh-hc
Q 018119          177 RGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQ-VD  255 (360)
Q Consensus       177 ~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~-~d  255 (360)
                                       ...+|+.-++-|+|||++++.+.+.... +        .+..    +..+..++-....- -.
T Consensus       105 -----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~--------~~~~----~~~~~~~~~w~~~~~~~  154 (255)
T PRK14103        105 -----------------HADLLVRWVDELAPGSWIAVQVPGNFDA-P--------SHAA----VRALARREPWAKLLRDI  154 (255)
T ss_pred             -----------------HHHHHHHHHHhCCCCcEEEEEcCCCcCC-h--------hHHH----HHHHhccCchhHHhccc
Confidence                             2234555568899999999987653211 1        1111    11222111110000 01


Q ss_pred             ccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhh-hHHHHhhhchhHHHHHHHHHHHHH
Q 018119          256 SFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANL-EILVKEHFGNGIIEDLFDRFSKKI  334 (360)
Q Consensus       256 ~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~-e~~l~~hfg~~i~delf~r~~~~~  334 (360)
                      .+..+.++.+.+++..++++.| |++...+..... ..   .....+..|+++.. .++++ .++++..+++-+.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l  228 (255)
T PRK14103        155 PFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QL---TGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLL  228 (255)
T ss_pred             ccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eC---CCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHH
Confidence            1233456789999999999996 987665542211 11   13456888888654 56665 899888899999999988


Q ss_pred             Hhcc
Q 018119          335 DESS  338 (360)
Q Consensus       335 ~~~~  338 (360)
                      ++..
T Consensus       229 ~~~~  232 (255)
T PRK14103        229 REAY  232 (255)
T ss_pred             HHHC
Confidence            8764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.25  E-value=3.5e-10  Score=103.94  Aligned_cols=216  Identities=18%  Similarity=0.241  Sum_probs=136.2

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccc
Q 018119           18 YSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEF   97 (360)
Q Consensus        18 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~   97 (360)
                      .+|.+.+..|+.......+.+...       .     ..++.+|+|+|||+|..+..+....               |..
T Consensus         7 ~~y~~~~~~q~~~~~~l~~~~~~~-------~-----~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~   59 (240)
T TIGR02072         7 KTYDRHAKIQREMAKRLLALLKEK-------G-----IFIPASVLDIGCGTGYLTRALLKRF---------------PQA   59 (240)
T ss_pred             hchhHHHHHHHHHHHHHHHHhhhh-------c-----cCCCCeEEEECCCccHHHHHHHHhC---------------CCC
Confidence            479999999988777655554311       0     1335789999999998776553321               346


Q ss_pred             eEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecC
Q 018119           98 QVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSR  177 (360)
Q Consensus        98 ~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~  177 (360)
                      ++...|......+..-+.+++ +-.|+.   +++....+|++++|+++++.++||+..                      
T Consensus        60 ~~~~~D~~~~~~~~~~~~~~~-~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~----------------------  113 (240)
T TIGR02072        60 EFIALDISAGMLAQAKTKLSE-NVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD----------------------  113 (240)
T ss_pred             cEEEEeChHHHHHHHHHhcCC-CCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC----------------------
Confidence            678888765444444444432 212333   345666788999999999999999633                      


Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc
Q 018119          178 GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF  257 (360)
Q Consensus       178 ~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f  257 (360)
                                      ...+|+...+-|+|||.+++..++....            ..+..++..               
T Consensus       114 ----------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~---------------  150 (240)
T TIGR02072       114 ----------------LSQALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQ---------------  150 (240)
T ss_pred             ----------------HHHHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHH---------------
Confidence                            3457888889999999999986544321            222222221               


Q ss_pred             CCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHH-hhhchhHHHHHHHHHHHHHH
Q 018119          258 NLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVK-EHFGNGIIEDLFDRFSKKID  335 (360)
Q Consensus       258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~-~hfg~~i~delf~r~~~~~~  335 (360)
                       ....+++.+++.+++...  |.+..++.......+   .+...+..++|........ ..++.+...++.+.|.+...
T Consensus       151 -~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (240)
T TIGR02072       151 -HGLRYLSLDELKALLKNS--FELLTLEEELITLSF---DDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ  223 (240)
T ss_pred             -hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC---CCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence             112367899999998875  776555433212222   2456678888876653332 23566667777777766554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.12  E-value=2.4e-09  Score=100.61  Aligned_cols=207  Identities=15%  Similarity=0.200  Sum_probs=121.9

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccce
Q 018119           19 SYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQ   98 (360)
Q Consensus        19 sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~   98 (360)
                      .|.+++..|+.+.......+        .       ....-+|+|+|||+|.+|..+.        ..         ..+
T Consensus        19 ~Y~~~~~~q~~~a~~l~~~l--------~-------~~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~   66 (251)
T PRK10258         19 HYEQHAELQRQSADALLAML--------P-------QRKFTHVLDAGCGPGWMSRYWR--------ER---------GSQ   66 (251)
T ss_pred             hHhHHHHHHHHHHHHHHHhc--------C-------ccCCCeEEEeeCCCCHHHHHHH--------Hc---------CCe
Confidence            68888888887766433322        1       1234679999999998765441        11         146


Q ss_pred             EEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCC
Q 018119           99 VFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG  178 (360)
Q Consensus        99 v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~  178 (360)
                      |+-.|+.. +.-...+.... ...|..+   .+..-.+|++++|+|+|+.++||+..                       
T Consensus        67 v~~~D~s~-~~l~~a~~~~~-~~~~~~~---d~~~~~~~~~~fD~V~s~~~l~~~~d-----------------------  118 (251)
T PRK10258         67 VTALDLSP-PMLAQARQKDA-ADHYLAG---DIESLPLATATFDLAWSNLAVQWCGN-----------------------  118 (251)
T ss_pred             EEEEECCH-HHHHHHHhhCC-CCCEEEc---CcccCcCCCCcEEEEEECchhhhcCC-----------------------
Confidence            67777632 11111221111 1124333   34444578899999999999999544                       


Q ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC
Q 018119          179 PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN  258 (360)
Q Consensus       179 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~  258 (360)
                                     ...+|+.-.+-|+|||.+++..++.++.            .-+.++|..+-..           .
T Consensus       119 ---------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~-----------~  160 (251)
T PRK10258        119 ---------------LSTALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDER-----------P  160 (251)
T ss_pred             ---------------HHHHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccC-----------C
Confidence                           3345666678999999999998876532            3345555432111           1


Q ss_pred             CCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHH-----hhhchhHHHHHHHHH
Q 018119          259 LPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVK-----EHFGNGIIEDLFDRF  330 (360)
Q Consensus       259 ~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~-----~hfg~~i~delf~r~  330 (360)
                      ...-+++.+|+...+...+ +.+ ..+.+  ...+   .++..+...+|......+.     ..++...+.++.+.|
T Consensus       161 ~~~~~~~~~~l~~~l~~~~-~~~-~~~~~--~~~f---~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (251)
T PRK10258        161 HANRFLPPDAIEQALNGWR-YQH-HIQPI--TLWF---DDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAW  230 (251)
T ss_pred             ccccCCCHHHHHHHHHhCC-cee-eeeEE--EEEC---CCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhc
Confidence            1223678999999998653 543 22222  1122   2566788888888765432     234444444444444

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.98  E-value=5.8e-09  Score=95.62  Aligned_cols=212  Identities=18%  Similarity=0.241  Sum_probs=129.6

Q ss_pred             CceeEEeeecCCCCCccHHHHH-----------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ-----------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~-----------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      ..+-+|.|||||.|.-|-++.+           .-.++|.+.-.    ..|..++.-.|+-                   
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~-------------------   85 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLR-------------------   85 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH----hCCCCceecccHh-------------------
Confidence            4478999999999999999877           12233333211    1355666666663                   


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                               ..-|+...|++||+++||||...|..                                      |..=-.+
T Consensus        86 ---------~w~p~~~~dllfaNAvlqWlpdH~~l--------------------------------------l~rL~~~  118 (257)
T COG4106          86 ---------TWKPEQPTDLLFANAVLQWLPDHPEL--------------------------------------LPRLVSQ  118 (257)
T ss_pred             ---------hcCCCCccchhhhhhhhhhccccHHH--------------------------------------HHHHHHh
Confidence                     35688899999999999996664432                                      2222378


Q ss_pred             hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCC-CcccCCHHHHHHHHHhCCceeEEE
Q 018119          205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNL-PSYFPTPQELKALLKRNASFSIEK  283 (360)
Q Consensus       205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~-P~y~ps~eE~~~~ie~~g~F~I~~  283 (360)
                      |.|||.|-+.|++--++  .       .+.++.+.    ++++ --+.++.++.+ =---|++.-|-+++...+ =+|.-
T Consensus       119 L~Pgg~LAVQmPdN~de--p-------sH~~mr~~----A~~~-p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDi  183 (257)
T COG4106         119 LAPGGVLAVQMPDNLDE--P-------SHRLMRET----ADEA-PFAQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDI  183 (257)
T ss_pred             hCCCceEEEECCCccCc--h-------hHHHHHHH----HhcC-chhhhhCccccccCCCCCHHHHHHHhCccc-ceeee
Confidence            99999999999764433  1       12333333    2222 11112221111 111367888888887653 33333


Q ss_pred             EE--EeccchhhhcCCChhHHHHHHHHhhh-HHHHhhhchhHHHHHHHHHHHHHHhcchhhccc-cCCCcEEEEEEEEec
Q 018119          284 FE--PLALSAQRQLATNTPTVVSHLRANLE-ILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTS-VYKPLVENVIILKHN  359 (360)
Q Consensus       284 ~e--~~~~~~~~~~~~~~~~~~~~iRA~~e-~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~-~~~~~~~~~~~L~r~  359 (360)
                      -+  ..++-      .+.+.+..|+++..- |.+. .++++-...|.++|..+++++.....+. .-..+--+|||-+|+
T Consensus       184 W~T~Y~h~l------~~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~  256 (257)
T COG4106         184 WHTTYYHQL------PGADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG  256 (257)
T ss_pred             eeeeccccC------CCccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence            33  22211      145789999997665 7775 7888899999999999999875432010 112234567776654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.87  E-value=2.1e-07  Score=88.71  Aligned_cols=196  Identities=13%  Similarity=0.109  Sum_probs=112.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CCCCcceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~~~~~f~~gvpgSFy~r  134 (360)
                      +...+|+|+|||+|..+..+..        .        ...+|+-.|+.. +.....+.. +....  +..+.+++...
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-~~~~~a~~~~~~~~~--i~~~~~D~~~~  111 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-KMVNIAKLRNSDKNK--IEFEANDILKK  111 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-HHHHHHHHHcCcCCc--eEEEECCcccC
Confidence            3457899999999998766531        1        124667777643 222223321 11111  22233456666


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+|+|..++|+++.                                    .|...+|+.-++-|+|||++++.
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence            789999999999888766431                                    13556788888999999999998


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhh
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQ  294 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~  294 (360)
                      -....+...    .    -+.+...+    ...            ....++++++.++++..| |++...+...  ..+.
T Consensus       156 d~~~~~~~~----~----~~~~~~~~----~~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~~--~~~~  208 (263)
T PTZ00098        156 DYCADKIEN----W----DEEFKAYI----KKR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDIS--DYWL  208 (263)
T ss_pred             EeccccccC----c----HHHHHHHH----Hhc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeCc--HHHH
Confidence            654443211    0    01111211    110            123579999999999995 9887766431  1110


Q ss_pred             cCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHh
Q 018119          295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE  336 (360)
Q Consensus       295 ~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~  336 (360)
                      . . -..+...+++-- .-+.+.+|++..+.+-.-+...+..
T Consensus       209 ~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  247 (263)
T PTZ00098        209 E-L-LQVELKKLEEKK-EEFLKLYSEKEYNSLKDGWTRKIKD  247 (263)
T ss_pred             H-H-HHHHHHHHHHhH-HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            0 0 011222233322 2233467887777777777666554

>PLN02244 tocopherol O-methyltransferase

Probab=98.75  E-value=9.6e-07  Score=87.19  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CC-CCcceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PS-DRQYYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~-~~~~f~~gvpgS  130 (360)
                      ...-+|+|+|||+|.++..+....                ..+|.--|+..+- -...+.+    .. .+--|..+   .
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~~-i~~a~~~~~~~g~~~~v~~~~~---D  176 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPVQ-AARANALAAAQGLSDKVSFQVA---D  176 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHHH-HHHHHHHHHhcCCCCceEEEEc---C
Confidence            345789999999999988775521                0223333332111 0111111    00 11123322   3


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +.+.-||++++|+|+|..++|++..                                      ...+|+.-.+-|+|||+
T Consensus       177 ~~~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~  218 (340)
T PLN02244        177 ALNQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGR  218 (340)
T ss_pred             cccCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcE
Confidence            4444578899999999999988532                                      23466666788999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +++......+..+.... ..   ..-...+..+..          .+.+|- ..+.+|+.+++++.| |...+.+.+
T Consensus       219 lvi~~~~~~~~~~~~~~-l~---~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v~~~d~  279 (340)
T PLN02244        219 IIIVTWCHRDLEPGETS-LK---PDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDIKTEDW  279 (340)
T ss_pred             EEEEEeccccccccccc-CC---HHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCeeEeeeC
Confidence            99987654432221100 00   011111222211          122332 348999999999996 988776655

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.74  E-value=6e-07  Score=92.12  Aligned_cols=189  Identities=15%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--C-CcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--D-RQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~-~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|..++.+.+.                ...+|+--|+.. +.-...+.-..  . +--|..   +.+..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~---~d~~~  325 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAEN----------------FDVHVVGIDLSV-NMISFALERAIGRKCSVEFEV---ADCTK  325 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHh----------------cCCEEEEEECCH-HHHHHHHHHhhcCCCceEEEE---cCccc
Confidence            3468999999999876654321                124566666642 22222221110  1 112333   34666


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      ..+|++++|+|+|..++||+..                                      ...+|+.-++-|+|||++++
T Consensus       326 ~~~~~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i  367 (475)
T PLN02336        326 KTYPDNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPGGKVLI  367 (475)
T ss_pred             CCCCCCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence            6789999999999999999643                                      23466677789999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhh
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR  293 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~  293 (360)
                      ....+....+.         ..+...+.   ..|             ...++.+++.+++++.| |++..++.+..  .+
T Consensus       368 ~~~~~~~~~~~---------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~~--~~  419 (475)
T PLN02336        368 SDYCRSPGTPS---------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRTD--QF  419 (475)
T ss_pred             EEeccCCCCCc---------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-CeeeeeecchH--HH
Confidence            98766543221         11111111   112             23678999999999995 99887765421  11


Q ss_pred             hcCCChhHHHHHHHHh---hhHHHHhhhchhHHHHHHHHHHHHHHhc
Q 018119          294 QLATNTPTVVSHLRAN---LEILVKEHFGNGIIEDLFDRFSKKIDES  337 (360)
Q Consensus       294 ~~~~~~~~~~~~iRA~---~e~~l~~hfg~~i~delf~r~~~~~~~~  337 (360)
                           ...+..+..++   .+.++ ..+|++..+.+...+...+...
T Consensus       420 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~  460 (475)
T PLN02336        420 -----LQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVRS  460 (475)
T ss_pred             -----HHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhhh
Confidence                 12222333222   22222 4577777777777777666543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.74  E-value=3.6e-08  Score=91.17  Aligned_cols=171  Identities=12%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC--CCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS--DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~--~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..+..+.+.+              .|..+|+-.|+.. ..-...+. +..  ..+  +.-+.+.+..-
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~--v~~~~~d~~~~  108 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGRQKVKDAGLHN--VELVHGNAMEL  108 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHHHhcCCCc--eEEEEechhcC
Confidence            4699999999999877554321              1335677777642 22222221 110  011  11222334444


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+|++++|+|+++.++||++.                                      ...+|+.-.+-|+|||++++.
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       109 PFDDNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             CCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEE
Confidence            578899999999999999643                                      223566667889999999987


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      -.+.++...... ....++..+-..+..+...+........  ..-..+|+.+|+++.+++.| |++.+++.+
T Consensus       151 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~  219 (231)
T TIGR02752       151 ETSQPTIPGFKQ-LYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSY  219 (231)
T ss_pred             ECCCCCChHHHH-HHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence            655443210000 0000000001111111111110000000  11234789999999999996 998887766

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00740 methyltransferase, putative

Probab=98.69  E-value=2e-07  Score=87.08  Aligned_cols=159  Identities=19%  Similarity=0.203  Sum_probs=93.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC---CCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP---SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~---~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..+..+.+.+-             .|..+++--|+-. ++-...+. +.   ...++  .-+-|.+..
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~-------------~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v--~~~~~d~~~  117 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNIN-------------QPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPV--EILCNDIRH  117 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcC-------------CCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCe--EEEECChhh
Confidence            45899999999998877654321             2446666666632 22222221 11   11111  122345554


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.+|  +.|+++|++++||++.                                    .|...+|+.-.+-|+|||++++
T Consensus       118 ~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~i  159 (239)
T TIGR00740       118 VEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVL  159 (239)
T ss_pred             CCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence            4444  5789999999999643                                    1344578888899999999998


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhh----cccCCCcccCCHHHHHHHHHhCCcee
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAK-MGLLSEAQV----DSFNLPSYFPTPQELKALLKRNASFS  280 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~eE~~~~ie~~g~F~  280 (360)
                      .-..+.+...        ..+.+...+..+.. .|. +++++    +.+.-.....|++|+.+.+++.| |+
T Consensus       160 ~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~  221 (239)
T TIGR00740       160 SEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS  221 (239)
T ss_pred             eecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence            8544333211        11333333433333 443 44433    22222344579999999999996 75

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=98.68  E-value=5.7e-06  Score=75.71  Aligned_cols=220  Identities=13%  Similarity=0.077  Sum_probs=112.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~  133 (360)
                      ....+|+|+|||+|..+..+....              .|.-+++--|+...-....-+...  ....-|..+   .+..
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~   80 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG---DADG   80 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec---cccc
Confidence            345789999999998777664432              023455556653321111111100  011112222   2333


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      ..+|++++|++++..++||+.+                                      ...+|+.-.+-|+|||.+++
T Consensus        81 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         81 LPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             CCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEE
Confidence            4467889999999999999644                                      33467777789999999998


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhh
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR  293 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~  293 (360)
                      ....-+......  ...   ..+...+..+...+          .-   ..+..++...+++.| |.+..++.+......
T Consensus       123 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~----------~~---~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~  183 (241)
T PRK08317        123 LDTDWDTLVWHS--GDR---ALMRKILNFWSDHF----------AD---PWLGRRLPGLFREAG-LTDIEVEPYTLIETD  183 (241)
T ss_pred             EecCCCceeecC--CCh---HHHHHHHHHHHhcC----------CC---CcHHHHHHHHHHHcC-CCceeEEEEEEeccC
Confidence            864322111000  011   12222222221111          00   123468899999985 988777765322111


Q ss_pred             hcCCChhHHHHHHHHhhhHHHH-hhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119          294 QLATNTPTVVSHLRANLEILVK-EHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       294 ~~~~~~~~~~~~iRA~~e~~l~-~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~  359 (360)
                         .........+......+.. .-+.++-+++++..+++......       ..-.+.++++..||
T Consensus       184 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~k  240 (241)
T PRK08317        184 ---LKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARAGE-------FFFSVTGFLVVGRK  240 (241)
T ss_pred             ---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-------EEEEEEEEEEEEeC
Confidence               0111122222222222222 22345666777777766543211       12246667776665

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.66  E-value=1.1e-07  Score=93.39  Aligned_cols=150  Identities=16%  Similarity=0.154  Sum_probs=90.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSFy~  133 (360)
                      .-+|+|+|||+|..++.+...               .+ -+|+--| |+..+..-++..    ....++  .-+++.+..
T Consensus       123 g~~VLDIGCG~G~~~~~la~~---------------g~-~~V~GiD-~S~~~l~q~~a~~~~~~~~~~i--~~~~~d~e~  183 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGA---------------GA-KLVVGID-PSQLFLCQFEAVRKLLGNDQRA--HLLPLGIEQ  183 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHc---------------CC-CEEEEEc-CCHHHHHHHHHHHHhcCCCCCe--EEEeCCHHH
Confidence            368999999999988755321               12 2366666 334443332221    111122  113334443


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --+ ++++|+|+|..++||+..                                      ...+|+.-++-|+|||++++
T Consensus       184 lp~-~~~FD~V~s~~vl~H~~d--------------------------------------p~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        184 LPA-LKAFDTVFSMGVLYHRRS--------------------------------------PLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             CCC-cCCcCEEEECChhhccCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence            333 688999999999998433                                      33467777789999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .....+.....                      .+...+.+..+.-.++.||.+++..++++.| |++.+++...
T Consensus       225 ~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~  276 (322)
T PRK15068        225 ETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVS  276 (322)
T ss_pred             EEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCC
Confidence            86543322100                      0011122223333456799999999999996 9988777553

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.65  E-value=1e-06  Score=83.86  Aligned_cols=164  Identities=18%  Similarity=0.160  Sum_probs=88.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC------CCCcceEeecCC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP------SDRQYYAAGVPG  129 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~------~~~~~f~~gvpg  129 (360)
                      ...+|+|+|||+|..+..+...+              .|.-+|+--|.-. +.-...+. .+      ..+--|..+   
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~r~~~~~~~~~~~i~~~~~---  134 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAASRQELKAKSCYKNIEWIEG---  134 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHhhhhhhccCCCeEEEEc---
Confidence            35799999999999776543321              0123344444321 11111111 00      001112222   


Q ss_pred             ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          130 SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      ....--||++|+|++++++++||+..                                      ...+|+.-++-|+|||
T Consensus       135 d~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG  176 (261)
T PLN02233        135 DATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLKPGS  176 (261)
T ss_pred             ccccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCc
Confidence            23334578899999999999999543                                      3346777778999999


Q ss_pred             eEEEEecCCCCCCCCCCCchhhHHHHHHH-HHHHHH-HcCCCCHhhhcccCCC---cccCCHHHHHHHHHhCCceeEEEE
Q 018119          210 LMALIVPCLPDGISPGECSVLASADLLGD-CLMDMA-KMGLLSEAQVDSFNLP---SYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       210 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~-al~~mv-~eG~i~~e~~d~f~~P---~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      ++++.-.++++...     ...+++..-. .+.-+. .-|.-  +.+.  .++   -.+++.+|+.+.+++.| |++.+.
T Consensus       177 ~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~y~--~l~~s~~~f~s~~el~~ll~~aG-F~~~~~  246 (261)
T PLN02233        177 RVSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGLA--KEYE--YLKSSINEYLTGEELEKLALEAG-FSSAKH  246 (261)
T ss_pred             EEEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCCh--HHHH--HHHHHHHhcCCHHHHHHHHHHCC-CCEEEE
Confidence            99999777664311     1111111111 111010 01221  1110  000   12789999999999985 987654


Q ss_pred             EE
Q 018119          285 EP  286 (360)
Q Consensus       285 e~  286 (360)
                      ..
T Consensus       247 ~~  248 (261)
T PLN02233        247 YE  248 (261)
T ss_pred             EE
Confidence            43

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.64  E-value=1.3e-07  Score=81.41  Aligned_cols=138  Identities=22%  Similarity=0.299  Sum_probs=85.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccc--c
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFH--N  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy--~  133 (360)
                      ....+|+|+|||+|.++..+        .+.        + .++.-.|.-...-..            ...++..|.  .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l--------~~~--------~-~~~~g~D~~~~~~~~------------~~~~~~~~~~~~   71 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRAL--------AKR--------G-FEVTGVDISPQMIEK------------RNVVFDNFDAQD   71 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHH--------HHT--------T-SEEEEEESSHHHHHH------------TTSEEEEEECHT
T ss_pred             CCCCEEEEEcCCCCHHHHHH--------HHh--------C-CEEEEEECCHHHHhh------------hhhhhhhhhhhh
Confidence            45679999999999765544        111        1 367776664211111            001111121  4


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      ..+|++++|+|+|+.+|||+..                                      +..+|+.-.+-|+|||.+++
T Consensus        72 ~~~~~~~fD~i~~~~~l~~~~d--------------------------------------~~~~l~~l~~~LkpgG~l~~  113 (161)
T PF13489_consen   72 PPFPDGSFDLIICNDVLEHLPD--------------------------------------PEEFLKELSRLLKPGGYLVI  113 (161)
T ss_dssp             HHCHSSSEEEEEEESSGGGSSH--------------------------------------HHHHHHHHHHCEEEEEEEEE
T ss_pred             hhccccchhhHhhHHHHhhccc--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence            4568899999999999999653                                      34577888899999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEE
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEK  283 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~  283 (360)
                      ....+...              ....+..   -.......     --..+.+.++++.++++.| |+|..
T Consensus       114 ~~~~~~~~--------------~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~  160 (161)
T PF13489_consen  114 SDPNRDDP--------------SPRSFLK---WRYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE  160 (161)
T ss_dssp             EEEBTTSH--------------HHHHHHH---CCGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred             EEcCCcch--------------hhhHHHh---cCCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence            99876531              0011111   01111100     1125669999999999995 98864

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.59  E-value=1.1e-06  Score=82.79  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=89.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC----CCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP----SDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~----~~~~~f~~gvpgSFy  132 (360)
                      ..-+|+|+|||+|.+++.+...+-             .|..+|+--|.- -+.-...+..-    ...++  .-+.|++.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~-------------~~~~~v~gvD~S-~~ml~~A~~~~~~~~~~~~v--~~~~~d~~  119 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIH-------------HDNCKIIAIDNS-PAMIERCRRHIDAYKAPTPV--DVIEGDIR  119 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcC-------------CCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCe--EEEeCChh
Confidence            346899999999998876543221             133555555542 22222222210    01111  11223343


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .-.+|  ..|+++++.++||+..  .                                  +...+|+.-++-|+|||.++
T Consensus       120 ~~~~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~  161 (247)
T PRK15451        120 DIAIE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALV  161 (247)
T ss_pred             hCCCC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence            32233  5899999999999753  1                                  13346777789999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC---CCccc-CCHHHHHHHHHhCCcee
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN---LPSYF-PTPQELKALLKRNASFS  280 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~---~P~y~-ps~eE~~~~ie~~g~F~  280 (360)
                      +.=.-..+...        ..+.+...|.++....-.+++++..+.   --... -|.++..+++++.| |+
T Consensus       162 l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~  224 (247)
T PRK15451        162 LSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE  224 (247)
T ss_pred             EEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence            97322222111        123444556655545445555553320   11223 37888888888886 54

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.58  E-value=1e-06  Score=83.20  Aligned_cols=159  Identities=14%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC---CCc-ceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS---DRQ-YYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~---~~~-~f~~gvpgS  130 (360)
                      +...+|+|+|||+|..|..+...                 ..+|+..|+.. +.-...+.. ..   ..+ -|+.+   +
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~-----------------g~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~~---d  101 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL-----------------GHQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIHC---A  101 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc-----------------CCEEEEEECCH-HHHHHHHHHHHhcCCccceEEEEc---C
Confidence            34579999999999888777431                 13455555432 222222211 10   011 12222   2


Q ss_pred             cccc-cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          131 FHNR-LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       131 Fy~r-lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      ...- -+|++++|+|++..+|||+...                                      ..+|+.-++-|+|||
T Consensus       102 ~~~l~~~~~~~fD~V~~~~vl~~~~~~--------------------------------------~~~l~~~~~~LkpgG  143 (255)
T PRK11036        102 AQDIAQHLETPVDLILFHAVLEWVADP--------------------------------------KSVLQTLWSVLRPGG  143 (255)
T ss_pred             HHHHhhhcCCCCCEEEehhHHHhhCCH--------------------------------------HHHHHHHHHHcCCCe
Confidence            2221 1456899999999999997541                                      124555567899999


Q ss_pred             eEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          210 LMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       210 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ++++.+......         .+-.++..-+ +.+..|+...+..  .-.|.+..+++|+.+++++.| |++....-
T Consensus       144 ~l~i~~~n~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~g  207 (255)
T PRK11036        144 ALSLMFYNANGL---------LMHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTG  207 (255)
T ss_pred             EEEEEEECccHH---------HHHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeee
Confidence            999887543311         0001111111 1123333221111  123566789999999999985 99876553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.58  E-value=1.8e-06  Score=79.49  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+++|..++||+..                                      +..+|+.-++-|+|||++++.-...
T Consensus        66 ~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~  107 (224)
T smart00828       66 DTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLADFIA  107 (224)
T ss_pred             CCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEEccc
Confidence            58999999999999532                                      4457888889999999999875422


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ...   +                     + .     ..-..+.|.++.+|+.+.+++.| |++.+.+.+
T Consensus       108 ~~~---~---------------------~-~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~  145 (224)
T smart00828      108 NLL---S---------------------A-I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDA  145 (224)
T ss_pred             ccC---c---------------------c-c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence            110   0                     0 0     00123456899999999999885 999888766

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.55  E-value=9.4e-07  Score=80.52  Aligned_cols=137  Identities=18%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcc-eEeecCCccccccC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQY-YAAGVPGSFHNRLF  136 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~-f~~gvpgSFy~rlf  136 (360)
                      .-+|+|+|||+|.+++.+.+.                 -.+|.--|+.. +.-...+..-....+ -+..+.+.+...-+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~-----------------g~~V~gvD~S~-~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~   92 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN-----------------GFDVTAWDKNP-MSIANLERIKAAENLDNLHTAVVDLNNLTF   92 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC-----------------CCEEEEEeCCH-HHHHHHHHHHHHcCCCcceEEecChhhCCc
Confidence            368999999999999887641                 02333334421 111111110000000 01111112222123


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE-e
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI-V  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~-~  215 (360)
                      + +++|+|+|+.++||+..                                    .|...+++.-++-|+|||++++. +
T Consensus        93 ~-~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~~~  135 (197)
T PRK11207         93 D-GEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAA  135 (197)
T ss_pred             C-CCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            3 57999999999999643                                    13556788888999999996554 3


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      +...+. +.                    ..|            |-+..+.+|+.+.++   .|++.+.+
T Consensus       136 ~~~~~~-~~--------------------~~~------------~~~~~~~~el~~~~~---~~~~~~~~  169 (197)
T PRK11207        136 MDTADY-PC--------------------TVG------------FPFAFKEGELRRYYE---GWEMVKYN  169 (197)
T ss_pred             ecCCCC-CC--------------------CCC------------CCCccCHHHHHHHhC---CCeEEEee
Confidence            322211 00                    001            235578899998887   48887764

>TIGR00452 methyltransferase, putative

Probab=98.54  E-value=2.9e-06  Score=83.01  Aligned_cols=90  Identities=13%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +.+++|+|+|+.+|||+..                                      ...+|+.-++-|+|||.||+...
T Consensus       185 ~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       185 ELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             CCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEEEEE
Confidence            3468999999999999532                                      23367777899999999999865


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ..+....          ..            +...+.+..+.-.++.||.+++..++++.| |+..++...
T Consensus       227 ~i~g~~~----------~~------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~  274 (314)
T TIGR00452       227 VIDGDLN----------TV------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV  274 (314)
T ss_pred             EecCccc----------cc------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence            4321100          00            011111222333456789999999999985 987766644

Known examples to date are restricted to the proteobacteria.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.45  E-value=2.1e-05  Score=79.07  Aligned_cols=87  Identities=10%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|.|+|...+||+..                                    +++..+++.-.+-|+|||++++...+
T Consensus       226 ~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            468999999999988522                                    13456778888999999999999877


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .+......                         ..-++.+.+|- +.|+++++....+ . .|+|..++.+
T Consensus       270 ~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~-~-~~~v~d~~~~  313 (383)
T PRK11705        270 SNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASE-G-LFVMEDWHNF  313 (383)
T ss_pred             CCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHH-C-CcEEEEEecC
Confidence            66431100                         01123455663 6899999999877 3 5999888766

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.45  E-value=2.5e-05  Score=75.01  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=91.6

Q ss_pred             eeEEeeecCCCCCccHHHHHH-------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           58 VFSIADLGCSVGPNTFNAVQN-------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~-------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      -.+|+|+|||-|..++.+.+.             -.+.++++....+.+ ..++|.+.|-.  |+               
T Consensus        63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~--~~---------------  124 (273)
T PF02353_consen   63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQDYR--DL---------------  124 (273)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-GG--G----------------
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEeecc--cc---------------
Confidence            469999999999999998885             233344444444321 13666666532  11               


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                                  | .++|-|+|--++.-+..                                    +++..|++.-++-
T Consensus       125 ------------~-~~fD~IvSi~~~Ehvg~------------------------------------~~~~~~f~~~~~~  155 (273)
T PF02353_consen  125 ------------P-GKFDRIVSIEMFEHVGR------------------------------------KNYPAFFRKISRL  155 (273)
T ss_dssp             ---------------S-SEEEEESEGGGTCG------------------------------------GGHHHHHHHHHHH
T ss_pred             ------------C-CCCCEEEEEechhhcCh------------------------------------hHHHHHHHHHHHh
Confidence                        1 18888888877766421                                    3577899999999


Q ss_pred             hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEE
Q 018119          205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEK  283 (360)
Q Consensus       205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~  283 (360)
                      |+|||++++...+..+...          .          .+.-.+.+-+..+.+|- +.|+.+|+...++.. .|+|..
T Consensus       156 LkpgG~~~lq~i~~~~~~~----------~----------~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~-~l~v~~  214 (273)
T PF02353_consen  156 LKPGGRLVLQTITHRDPPY----------H----------AERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA-GLEVED  214 (273)
T ss_dssp             SETTEEEEEEEEEE--HHH----------H----------HCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT-T-EEEE
T ss_pred             cCCCcEEEEEecccccccc----------h----------hhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC-CEEEEE
Confidence            9999999999876654310          0          00000001122333454 568999999988877 599998


Q ss_pred             EEEeccchhhhcCCChhHHHHHHHHhhhHHHH
Q 018119          284 FEPLALSAQRQLATNTPTVVSHLRANLEILVK  315 (360)
Q Consensus       284 ~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~  315 (360)
                      .+.+-           ..++.++|+|.+.+.+
T Consensus       215 ~~~~~-----------~hY~~Tl~~W~~~f~~  235 (273)
T PF02353_consen  215 VENLG-----------RHYARTLRAWRENFDA  235 (273)
T ss_dssp             EEE-H-----------HHHHHHHHHHHHHHHH
T ss_pred             EEEcC-----------cCHHHHHHHHHHHHHH
Confidence            87762           3344455555555443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.43  E-value=5.6e-06  Score=81.30  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCc-ceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQ-YYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~-~f~~gvpgSFy  132 (360)
                      ..+|+|+|||+|..+..+..                 +..+|+--|.-.. .-...+. .   +.... -|..   +++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~-~i~~Ar~~~~~~~~~~~i~~~~---~dae  190 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDK-NVKIARLHADMDPVTSTIEYLC---TTAE  190 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHH-HHHHHHHHHHhcCcccceeEEe---cCHH
Confidence            46999999999998765532                 0134555555421 1111111 0   00011 1222   3344


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .-.++++++|+|++..+|||+..                                      ...||+.-++-|+|||+++
T Consensus       191 ~l~~~~~~FD~Vi~~~vLeHv~d--------------------------------------~~~~L~~l~r~LkPGG~li  232 (322)
T PLN02396        191 KLADEGRKFDAVLSLEVIEHVAN--------------------------------------PAEFCKSLSALTIPNGATV  232 (322)
T ss_pred             HhhhccCCCCEEEEhhHHHhcCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence            43467789999999999999554                                      2347788888899999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHH-HHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLL-GDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      +....+...        ......+ ..-+..++..|.         .....+.+++|+..+++..| |++..+.-
T Consensus       233 ist~nr~~~--------~~~~~i~~~eyi~~~lp~gt---------h~~~~f~tp~eL~~lL~~aG-f~i~~~~G  289 (322)
T PLN02396        233 LSTINRTMR--------AYASTIVGAEYILRWLPKGT---------HQWSSFVTPEELSMILQRAS-VDVKEMAG  289 (322)
T ss_pred             EEECCcCHH--------HHHHhhhhHHHHHhcCCCCC---------cCccCCCCHHHHHHHHHHcC-CeEEEEee
Confidence            998654311        0000110 011111111121         11223789999999999985 99887763

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.42  E-value=1.2e-06  Score=82.43  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC---cceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR---QYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~---~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||||--|+.+...+=               +-+|..-|...+=.+.-=+-+.+..   -.|+.|   ...+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g---------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~---dAe~  112 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG---------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG---DAEN  112 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC---------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEe---chhh
Confidence            579999999999998888754321               2455555554322222111122111   124444   4888


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.||++|+|++.+++.|||+.+.+.                                      .|+--++=|+|||++++
T Consensus       113 LPf~D~sFD~vt~~fglrnv~d~~~--------------------------------------aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         113 LPFPDNSFDAVTISFGLRNVTDIDK--------------------------------------ALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             CCCCCCccCEEEeeehhhcCCCHHH--------------------------------------HHHHHHHhhcCCeEEEE
Confidence            8899999999999999999776543                                      34555588999999988


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHH-HHHHHHHcCCCC--Hhhh-cccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          214 IVPCLPDGISPGECSVLASADLLGD-CLMDMAKMGLLS--EAQV-DSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~-al~~mv~eG~i~--~e~~-d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      .=..++...+...    ..+..... ++--+.  .+++  .+.+ .-....--+|+.+++.+.+++.| |+....+
T Consensus       155 le~~~p~~~~~~~----~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~~~  223 (238)
T COG2226         155 LEFSKPDNPVLRK----AYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVRYE  223 (238)
T ss_pred             EEcCCCCchhhHH----HHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEeeE
Confidence            8666664422111    11111122 111111  1111  1111 11123334799999999999985 8765543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.41  E-value=5.6e-07  Score=70.31  Aligned_cols=94  Identities=19%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             eeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccccCCCCc
Q 018119           62 ADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRLFPKAS  140 (360)
Q Consensus        62 aDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rlfP~~S  140 (360)
                      +|+|||+|.++..+.+.                +...|+-.|.-. +.-...+. ......-+..   +++..--||++|
T Consensus         1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~s   60 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-EMLEQARKRLKNEGVSFRQ---GDAEDLPFPDNS   60 (95)
T ss_dssp             EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-HHHHHHHHHTTTSTEEEEE---SBTTSSSS-TT-
T ss_pred             CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-HHHHHHHhcccccCchhee---ehHHhCcccccc
Confidence            69999999998887554                124555555532 22222222 2111111333   447777999999


Q ss_pred             eeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          141 INFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       141 ~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      +|+++++.++||+   +                                   |...+|+.-++-|||||++++
T Consensus        61 fD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   61 FDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999997   1                                   356688888899999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.40  E-value=2.8e-06  Score=81.78  Aligned_cols=124  Identities=18%  Similarity=0.293  Sum_probs=77.6

Q ss_pred             eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEee
Q 018119           59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG  126 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~g  126 (360)
                      -+|+|+|||+|.|++.+..            ..++.+++.....+   ..+++..-|+..                    
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~---l~v~~~~~D~~~--------------------  178 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN---LNIRTGLYDINS--------------------  178 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CceEEEEechhc--------------------
Confidence            3899999999999988865            23333333222211   123333333321                    


Q ss_pred             cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                             .- +++++|+|+|+.+||++..                                    .++..+|+.-.+-|+
T Consensus       179 -------~~-~~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~Lk  214 (287)
T PRK12335        179 -------AS-IQEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTN  214 (287)
T ss_pred             -------cc-ccCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcC
Confidence                   11 1478999999999999643                                    146678888889999


Q ss_pred             cCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEEEEE
Q 018119          207 SGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      |||++++...-..+..+                                 ...| -+..+.+|+++.+..   |+|.+.+
T Consensus       215 pgG~~l~v~~~~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~  258 (287)
T PRK12335        215 PGGYNLIVCAMDTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN  258 (287)
T ss_pred             CCcEEEEEEecccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence            99997765432221100                                 1123 345779999998753   9988774

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.33  E-value=6.3e-06  Score=75.79  Aligned_cols=162  Identities=17%  Similarity=0.239  Sum_probs=91.5

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC---CCc-ceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS---DRQ-YYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~---~~~-~f~~gvpgSFy  132 (360)
                      ..+|+|+|||+|..+..+....              ++..+++..|+..+ .-...+.. ..   ..+ -|..   +++.
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~---~d~~  113 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-MLAVGREKLRDLGLSGNVEFVQ---GDAE  113 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-HHHHHHHhhcccccccCeEEEe---cccc
Confidence            4799999999999877764432              01366777777432 21222221 11   111 1222   3455


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      ...++.+++|++++++++|++.+                                      ...+|+...+-|+|||+++
T Consensus       114 ~~~~~~~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~li  155 (239)
T PRK00216        114 ALPFPDNSFDAVTIAFGLRNVPD--------------------------------------IDKALREMYRVLKPGGRLV  155 (239)
T ss_pred             cCCCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHhccCCcEEE
Confidence            55577889999999999998654                                      2335677778899999998


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHH--------HHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLM--------DMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~--------~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      +.-...+....         +..+.+.+.        .+........+.+.  +.-..+++.+++..++++.| |++.+.
T Consensus       156 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~~  223 (239)
T PRK00216        156 ILEFSKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVRY  223 (239)
T ss_pred             EEEecCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceeee
Confidence            77544432211         111111111        11111110000000  00023579999999999995 988777


Q ss_pred             EEe
Q 018119          285 EPL  287 (360)
Q Consensus       285 e~~  287 (360)
                      ..+
T Consensus       224 ~~~  226 (239)
T PRK00216        224 RNL  226 (239)
T ss_pred             eee
Confidence            655

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.33  E-value=3.1e-06  Score=77.02  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--C-CcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--D-RQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~-~~~f~~gvpgSFy~r  134 (360)
                      +.+|+|+|||+|.+++.+...                 -.+|+--|+.. +.-...+....  . +-.+..+   ..-..
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~-----------------g~~V~~iD~s~-~~l~~a~~~~~~~~~~v~~~~~---d~~~~   89 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA-----------------GYDVRAWDHNP-ASIASVLDMKARENLPLRTDAY---DINAA   89 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC-----------------CCeEEEEECCH-HHHHHHHHHHHHhCCCceeEec---cchhc
Confidence            469999999999999988641                 03444445432 11111111100  0 0001111   11111


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+| +++|+++|+.++||++.                                    .|+..+++.-++-|+|||++++.
T Consensus        90 ~~~-~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        90 ALN-EDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ccc-CCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEE
Confidence            123 57999999999999643                                    13556788888999999996654


Q ss_pred             e
Q 018119          215 V  215 (360)
Q Consensus       215 ~  215 (360)
                      .
T Consensus       133 ~  133 (195)
T TIGR00477       133 A  133 (195)
T ss_pred             E
Confidence            3

Part of a tellurite-reducing operon tehA and tehB

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.31  E-value=3.1e-06  Score=68.86  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             eEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           59 FSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      -+|+|+|||+|..++.+.+              ..++..+++..... ..+.++++..|+ ..++..             
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~~~~~~-------------   67 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-EFDPDF-------------   67 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-HGGTTT-------------
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-ccCccc-------------
Confidence            5799999999999999998              56776666653322 234578777777 111111             


Q ss_pred             eecCCccccccCCCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                                   ...+|+++++. ++|++-..                                   .+...+|+.-.+
T Consensus        68 -------------~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~   99 (112)
T PF12847_consen   68 -------------LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRR   99 (112)
T ss_dssp             -------------SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHH
T ss_pred             -------------CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHH
Confidence                         12499999999 77763221                                   246667888899


Q ss_pred             HhccCCeEEEEe
Q 018119          204 ELASGGLMALIV  215 (360)
Q Consensus       204 EL~pGG~lvl~~  215 (360)
                      -|+|||+|++.-
T Consensus       100 ~L~pgG~lvi~~  111 (112)
T PF12847_consen  100 LLKPGGRLVINT  111 (112)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hcCCCcEEEEEE
Confidence            999999999863

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.31  E-value=8.5e-05  Score=71.44  Aligned_cols=181  Identities=17%  Similarity=0.217  Sum_probs=119.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      .-.+|+|+|||-|..++.++...             .+..+++..+.+.+. .++|.+-|.+  ||+.            
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~-~v~v~l~d~r--d~~e------------  136 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLED-NVEVRLQDYR--DFEE------------  136 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCc-ccEEEecccc--cccc------------
Confidence            35899999999999999999864             333344444444332 4999999985  5655            


Q ss_pred             EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                                      .+|-|+|-=+++.+..                                    +-+..|++.-.+
T Consensus       137 ----------------~fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~  164 (283)
T COG2230         137 ----------------PFDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYA  164 (283)
T ss_pred             ----------------ccceeeehhhHHHhCc------------------------------------ccHHHHHHHHHh
Confidence                            3777777777776544                                    236679999999


Q ss_pred             HhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEE
Q 018119          204 ELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       204 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      -|+|||+|++-..+.+..... .          ...|             .+.+.+| -+.||..++....++. +|.+.
T Consensus       165 ~L~~~G~~llh~I~~~~~~~~-~----------~~~~-------------i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~  219 (283)
T COG2230         165 LLKPGGRMLLHSITGPDQEFR-R----------FPDF-------------IDKYIFPGGELPSISEILELASEA-GFVVL  219 (283)
T ss_pred             hcCCCceEEEEEecCCCcccc-c----------chHH-------------HHHhCCCCCcCCCHHHHHHHHHhc-CcEEe
Confidence            999999999998877653110 0          0001             1122233 3468999999998888 49988


Q ss_pred             EEEEeccchhhhcCCChhHHHHHHHHhhhHHHHhhh---chhHHHHHHHHHHHHHHhcchhh
Q 018119          283 KFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHF---GNGIIEDLFDRFSKKIDESSVYS  341 (360)
Q Consensus       283 ~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~~hf---g~~i~delf~r~~~~~~~~~~~~  341 (360)
                      ..+.+-           ..++..++.|.+.+-+ +.   +...-++++.+|+..+...-..|
T Consensus       220 ~~~~~~-----------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F  269 (283)
T COG2230         220 DVESLR-----------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF  269 (283)
T ss_pred             hHhhhc-----------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            777662           2244455555555543 33   22344555666888888777766

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.28  E-value=8.2e-06  Score=80.66  Aligned_cols=145  Identities=18%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..++.+.+..               +..++..-|+.. ++-...+......++  .-+.|.....-+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~~~~i--~~i~gD~e~lp~  174 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEPLKEC--KIIEGDAEDLPF  174 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhhccCC--eEEeccHHhCCC
Confidence            35799999999999877654321               124566667632 222223222111111  113445555567


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++++|+++++.++|++.+                                      ....|+.-.+-|+|||++++.-.
T Consensus       175 ~~~sFDvVIs~~~L~~~~d--------------------------------------~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        175 PTDYADRYVSAGSIEYWPD--------------------------------------PQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             CCCceeEEEEcChhhhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence            8899999999999998443                                      12356677789999999987632


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ..++             ..+..-+.+                .-..+++.+|+.+++++.| |+...++..
T Consensus       217 ~~p~-------------~~~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i  257 (340)
T PLN02490        217 VHPT-------------FWLSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRI  257 (340)
T ss_pred             cCcc-------------hhHHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence            2111             011111110                0112579999999999985 987777755

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.28  E-value=4e-06  Score=78.71  Aligned_cols=166  Identities=20%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-C---CCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-P---SDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~---~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|..|+.+...+              .|..+|+--|.. .+.-.+.+.- .   ..+--|+.|   ..
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s-~~ML~~a~~k~~~~~~~~i~~v~~---da  107 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDIS-PGMLEVARKKLKREGLQNIEFVQG---DA  107 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES--HHHHHHHHHHHHHTT--SEEEEE----BT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCC-HHHHHHHHHHHHhhCCCCeeEEEc---CH
Confidence            345799999999998887763211              133566666654 3333333321 1   011224444   46


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--||++|+|++++++.||-+.+                                      ....|+.-.+-|||||++
T Consensus       108 ~~lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLkPGG~l  149 (233)
T PF01209_consen  108 EDLPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLKPGGRL  149 (233)
T ss_dssp             TB--S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             HHhcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcCCCeEE
Confidence            667799999999999999998543                                      333566666889999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc----CCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF----NLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      ++.=.++++...     ...+|...-..+.=++ -+++..+ .+.+    ..-.-+|+.+|+.+.+++.| |+..+.+
T Consensus       150 ~ile~~~p~~~~-----~~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~  219 (233)
T PF01209_consen  150 VILEFSKPRNPL-----LRALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR  219 (233)
T ss_dssp             EEEEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred             EEeeccCCCCch-----hhceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence            988777765311     1112222111111011 1223222 1111    11224689999999999985 8765544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK06202 hypothetical protein; Provisional

Probab=98.26  E-value=3.2e-05  Score=71.92  Aligned_cols=85  Identities=14%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc-ceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ-YYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~-~f~~gvpgSFy~r  134 (360)
                      .+..+|+|+|||+|..+..+....    ++    .   .|..+|.-.|+-. +.-...+....... -+..+....+   
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~----~---g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l---  123 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWA----RR----D---GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL---  123 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHH----Hh----C---CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc---
Confidence            446799999999999887654332    11    1   2446788888753 44444444322111 1222222211   


Q ss_pred             cCCCCceeEEEecccccccCC
Q 018119          135 LFPKASINFFHCSYGLQWLSS  155 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~  155 (360)
                      -++++++|+|+|+.+|||+..
T Consensus       124 ~~~~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        124 VAEGERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             cccCCCccEEEECCeeecCCh
Confidence            136789999999999999754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.23  E-value=1.4e-05  Score=72.62  Aligned_cols=164  Identities=18%  Similarity=0.258  Sum_probs=91.6

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCc-ceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQ-YYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~-~f~~gvpgSFy~r  134 (360)
                      ...+|+|+|||+|..+..+....-              +..+++.-|... ++-...+. ++...+ -|..   +.+...
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~--------------~~~~~~~iD~~~-~~~~~~~~~~~~~~~i~~~~---~d~~~~  100 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAP--------------DRGKVTGVDFSS-EMLEVAKKKSELPLNIEFIQ---ADAEAL  100 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcC--------------CCceEEEEECCH-HHHHHHHHHhccCCCceEEe---cchhcC
Confidence            457999999999998776643210              114566666632 22111111 111111 1222   345555


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .++++++|+++++..+|+...                                      ...+|+.-.+-|+|||++++.
T Consensus       101 ~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       101 PFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             CCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence            578889999999999998533                                      334788888999999999876


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHH-HHH--cCCCCHhhhcccCC----CcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMD-MAK--MGLLSEAQVDSFNL----PSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~~----P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      -.-.+...+         +..+.+.+.. |..  .+..... .+.+..    ..-+++.+|++.++++.| |++...+.+
T Consensus       143 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  211 (223)
T TIGR01934       143 EFSKPANAL---------LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSL  211 (223)
T ss_pred             EecCCCchh---------hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeee
Confidence            433222111         1222222221 110  0111100 111110    112578999999999996 988777755

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.18  E-value=2.7e-05  Score=74.09  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=83.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSFy  132 (360)
                      ..-+|+|+|||+|..++.+....              .+.-+|+--|.-. +.-...+.    ..-.+--|   +.|.+.
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~-~~l~~A~~~~~~~g~~~v~~---~~~d~~  138 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTP-EMLAKARANARKAGYTNVEF---RLGEIE  138 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCH-HHHHHHHHHHHHcCCCCEEE---EEcchh
Confidence            35699999999997776543211              1234566666532 12222221    10011112   223454


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--+|++++|+++|+.++||....                                      ...|+.-.+-|+|||+++
T Consensus       139 ~l~~~~~~fD~Vi~~~v~~~~~d~--------------------------------------~~~l~~~~r~LkpGG~l~  180 (272)
T PRK11873        139 ALPVADNSVDVIISNCVINLSPDK--------------------------------------ERVFKEAFRVLKPGGRFA  180 (272)
T ss_pred             hCCCCCCceeEEEEcCcccCCCCH--------------------------------------HHHHHHHHHHcCCCcEEE
Confidence            445788899999999999994321                                      123445557899999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      +.-.......+          +.+...+. +.. |.+           ....+.+|+..+++..| |...++..
T Consensus       181 i~~~~~~~~~~----------~~~~~~~~-~~~-~~~-----------~~~~~~~e~~~~l~~aG-f~~v~i~~  230 (272)
T PRK11873        181 ISDVVLRGELP----------EEIRNDAE-LYA-GCV-----------AGALQEEEYLAMLAEAG-FVDITIQP  230 (272)
T ss_pred             EEEeeccCCCC----------HHHHHhHH-HHh-ccc-----------cCCCCHHHHHHHHHHCC-CCceEEEe
Confidence            87432221111          22222222 111 111           12457889999999885 87766543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.10  E-value=8.7e-06  Score=70.58  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC---CchHHHHhhCCCCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS---NDFNALYKSLPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~---NDFn~lF~~l~~~~~~f~~gvpgSFy~  133 (360)
                      +..+|+|+|||+|..++.+...       .       .|..+++--|+-.   +--+..++.+...+--|..+-=-+ ..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~-------~-------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~   67 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKE-------L-------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LP   67 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHH-------S-------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GC
T ss_pred             CCCEEEEecCcCcHHHHHHHHh-------c-------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cc
Confidence            4689999999999999887641       0       1235556666532   223333333332222244433222 12


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      +.++ +.+|+++++.++||+..                                      ...+|+.-.+-|++||.+++
T Consensus        68 ~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~lk~~G~~i~  108 (152)
T PF13847_consen   68 QELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLKNIIRLLKPGGILII  108 (152)
T ss_dssp             GCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence            2245 89999999999999443                                      34567777789999999998


Q ss_pred             EecC
Q 018119          214 IVPC  217 (360)
Q Consensus       214 ~~~g  217 (360)
                      ....
T Consensus       109 ~~~~  112 (152)
T PF13847_consen  109 SDPN  112 (152)
T ss_dssp             EEEE
T ss_pred             EECC
Confidence            8755

...

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.09  E-value=1.2e-05  Score=73.22  Aligned_cols=91  Identities=21%  Similarity=0.359  Sum_probs=62.8

Q ss_pred             eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119           58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA  125 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~  125 (360)
                      +-+++|+|||.|.||+.+.+            ..++.+.+.-...+   -+++...-|+.  ++.               
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~---l~i~~~~~Dl~--~~~---------------   90 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG---LDIRTRVADLN--DFD---------------   90 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGC--CBS---------------
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC---ceeEEEEecch--hcc---------------
Confidence            46999999999999999988            45555544433322   34888888874  221               


Q ss_pred             ecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119          126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL  205 (360)
Q Consensus       126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  205 (360)
                                +| +.+|+++|..++|.|..   .                                 .+...++...+.+
T Consensus        91 ----------~~-~~yD~I~st~v~~fL~~---~---------------------------------~~~~i~~~m~~~~  123 (192)
T PF03848_consen   91 ----------FP-EEYDFIVSTVVFMFLQR---E---------------------------------LRPQIIENMKAAT  123 (192)
T ss_dssp             -----------T-TTEEEEEEESSGGGS-G---G---------------------------------GHHHHHHHHHHTE
T ss_pred             ----------cc-CCcCEEEEEEEeccCCH---H---------------------------------HHHHHHHHHHhhc
Confidence                      22 57999999999999764   1                                 2445677778999


Q ss_pred             ccCCeEEEEe
Q 018119          206 ASGGLMALIV  215 (360)
Q Consensus       206 ~pGG~lvl~~  215 (360)
                      +|||.+++..
T Consensus       124 ~pGG~~li~~  133 (192)
T PF03848_consen  124 KPGGYNLIVT  133 (192)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.00  E-value=2.1e-05  Score=71.95  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 018119           26 FQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLV  105 (360)
Q Consensus        26 ~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp  105 (360)
                      +|+.+.....|.+-...-+..  ..+   ....-+|+|+|||+|..++.+....               |..+|+-.|.-
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s   73 (202)
T PRK00121         14 GQQRAIEELWPRLSPAPLDWA--ELF---GNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVH   73 (202)
T ss_pred             chhhhhcccchhhcCCCCCHH--HHc---CCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEec
Confidence            455566655666532222211  122   2356799999999999998875421               22334444443


Q ss_pred             CCchHHHHhhC---CCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHH
Q 018119          106 SNDFNALYKSL---PSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEV  182 (360)
Q Consensus       106 ~NDFn~lF~~l---~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v  182 (360)
                      ..=-...-+.+   ...+-.|..+---..+.+.+|++++|.++++++.+|..... ...          +          
T Consensus        74 ~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~-~~~----------~----------  132 (202)
T PRK00121         74 EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH-HKR----------R----------  132 (202)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc-ccc----------c----------
Confidence            21111111111   00111122222101123447788999999999888855311 000          0          


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 018119          183 VEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLS  250 (360)
Q Consensus       183 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~  250 (360)
                               .+...||+.-++-|+|||.+++....               .+.+...+..|.+.|+-.
T Consensus       133 ---------~~~~~~l~~i~~~LkpgG~l~i~~~~---------------~~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        133 ---------LVQPEFLALYARKLKPGGEIHFATDW---------------EGYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             ---------cCCHHHHHHHHHHcCCCCEEEEEcCC---------------HHHHHHHHHHHHhCcccc
Confidence                     12355788888999999999987521               145556666777777643

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.00  E-value=7.5e-06  Score=65.57  Aligned_cols=96  Identities=19%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             eeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchH---HHHhhCCCCCcceEeecCCccccccCCC
Q 018119           62 ADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFN---ALYKSLPSDRQYYAAGVPGSFHNRLFPK  138 (360)
Q Consensus        62 aDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn---~lF~~l~~~~~~f~~gvpgSFy~rlfP~  138 (360)
                      +|+|||+|..+..++...               |..+++..|....=..   .-+........-..............+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   64 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPP-   64 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC--
T ss_pred             CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccc-
Confidence            599999999998876543               3467777776532110   001111111111222222222222222 


Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      +++|+|+++.+|||+.                                      |+..+|+.-++-|+|||+|
T Consensus        65 ~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred             cccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence            7999999999999971                                      3556788888999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.99  E-value=0.00021  Score=65.69  Aligned_cols=29  Identities=14%  Similarity=0.191  Sum_probs=24.5

Q ss_pred             CCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          258 NLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ..++|+++.+|+.++++..| |++.+.+.+
T Consensus       179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~  207 (219)
T TIGR02021       179 ATSAYLHPMTDLERALGELG-WKIVREGLV  207 (219)
T ss_pred             ccceEEecHHHHHHHHHHcC-ceeeeeecc
Confidence            34678899999999999986 999988765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.97  E-value=8.2e-05  Score=67.09  Aligned_cols=128  Identities=13%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCC--chH-HHHhhCCCCCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSN--DFN-ALYKSLPSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~N--DFn-~lF~~l~~~~~~f~~gvpgSFy~r  134 (360)
                      ..+|+|+|||+|..++.+...               .|..+|+.-|...+  ++- ...+...-.+--+..+   +..+ 
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~---------------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~---d~~~-  103 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIA---------------RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG---RAED-  103 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHH---------------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec---chhh-
Confidence            579999999999988877321               02245555565432  111 1111111111112222   2222 


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      +.+.+++|+++|.. +|+                                         +..+++.-.+-|+|||++++.
T Consensus       104 ~~~~~~fD~I~s~~-~~~-----------------------------------------~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       104 FQHEEQFDVITSRA-LAS-----------------------------------------LNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccccCCccEEEehh-hhC-----------------------------------------HHHHHHHHHHhcCCCCEEEEE
Confidence            23467899999865 333                                         122334445669999999987


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP  260 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P  260 (360)
                      . |...            ..-+....+.|..+|+ .+-+.+++..|
T Consensus       142 ~-~~~~------------~~~~~~~~e~~~~~~~-~~~~~~~~~~~  173 (181)
T TIGR00138       142 K-GKKY------------LDEIEEAKRKCQVLGV-EPLEVPPLTGP  173 (181)
T ss_pred             c-CCCc------------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence            4 2111            1344444566667785 45666888887

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.95  E-value=3.4e-05  Score=73.01  Aligned_cols=141  Identities=16%  Similarity=0.274  Sum_probs=94.2

Q ss_pred             eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCcc-----ceEEecCCCCCchHHHHhhCCCCCc
Q 018119           59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLE-----FQVFFNDLVSNDFNALYKSLPSDRQ  121 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~-----~~v~~nDlp~NDFn~lF~~l~~~~~  121 (360)
                      .+|+|+|||.|-.|..+..            ..|++-+++ .++.  ++.     ..+-+.|.--+|+..          
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~d--P~~~~~~~y~l~~~~~~~E~~~~----------  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMD--PVLEGAIAYRLEYEDTDVEGLTG----------  157 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcC--chhccccceeeehhhcchhhccc----------
Confidence            7899999999999988765            666666655 3321  111     123344444344333          


Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR  201 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R  201 (360)
                                        .+|.|+|+-.+|..                                      +|...||++-
T Consensus       158 ------------------~fDaVvcsevleHV--------------------------------------~dp~~~l~~l  181 (282)
T KOG1270|consen  158 ------------------KFDAVVCSEVLEHV--------------------------------------KDPQEFLNCL  181 (282)
T ss_pred             ------------------ccceeeeHHHHHHH--------------------------------------hCHHHHHHHH
Confidence                              38999998888762                                      3577899999


Q ss_pred             HHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119          202 AQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSI  281 (360)
Q Consensus       202 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I  281 (360)
                      ++-|+|||+++++...|.-.....     .+  .+.+.+.-.|-.|.=.-|+         |++++|+..+++.+ ++.+
T Consensus       182 ~~~lkP~G~lfittinrt~lS~~~-----~i--~~~E~vl~ivp~Gth~~ek---------fi~p~e~~~~l~~~-~~~v  244 (282)
T KOG1270|consen  182 SALLKPNGRLFITTINRTILSFAG-----TI--FLAEIVLRIVPKGTHTWEK---------FINPEELTSILNAN-GAQV  244 (282)
T ss_pred             HHHhCCCCceEeeehhhhHHHhhc-----cc--cHHHHHHHhcCCCCcCHHH---------cCCHHHHHHHHHhc-Ccch
Confidence            999999999999987765321110     01  1222222356667665555         89999999999998 5777


Q ss_pred             EEEE
Q 018119          282 EKFE  285 (360)
Q Consensus       282 ~~~e  285 (360)
                      +.+.
T Consensus       245 ~~v~  248 (282)
T KOG1270|consen  245 NDVV  248 (282)
T ss_pred             hhhh
Confidence            6655

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.94  E-value=0.00032  Score=68.01  Aligned_cols=151  Identities=13%  Similarity=0.130  Sum_probs=87.3

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC---CCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS---DRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~---~~~~f~~gvpgSF  131 (360)
                      .+..+|+|+|||+|..++.+.+.               .|..++..-|+|.  .-...+. +..   ..+  +..++|+|
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~---------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~r--v~~~~~d~  208 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKH---------------FPELDSTILNLPG--AIDLVNENAAEKGVADR--MRGIAVDI  208 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHH---------------CCCCEEEEEecHH--HHHHHHHHHHhCCccce--EEEEecCc
Confidence            34579999999999766655332               2567787779862  2222221 111   112  34566789


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      +..-+|.  .|+++.+..+|-...  +                                  +-..+|+.-++-|+|||++
T Consensus       209 ~~~~~~~--~D~v~~~~~lh~~~~--~----------------------------------~~~~il~~~~~~L~pgG~l  250 (306)
T TIGR02716       209 YKESYPE--ADAVLFCRILYSANE--Q----------------------------------LSTIMCKKAFDAMRSGGRL  250 (306)
T ss_pred             cCCCCCC--CCEEEeEhhhhcCCh--H----------------------------------HHHHHHHHHHHhcCCCCEE
Confidence            8766775  599998888883221  0                                  1234677777899999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      ++.=.-.++...       ..+..+...+.   .-|+..        .+.-+++.+|+.+++++.| |+..
T Consensus       251 ~i~d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v  302 (306)
T TIGR02716       251 LILDMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDV  302 (306)
T ss_pred             EEEEeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence            887322221111       01122222221   122210        1123566899999999995 8644

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.93  E-value=0.00077  Score=61.93  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=23.9

Q ss_pred             CCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          259 LPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       259 ~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .+.+..+.+|+.++++..| |++...+.+.
T Consensus       188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  216 (230)
T PRK07580        188 TRIYPHREKGIRRALAAAG-FKVVRTERIS  216 (230)
T ss_pred             CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence            4567789999999999985 9998887764

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.91  E-value=6.6e-06  Score=76.37  Aligned_cols=139  Identities=20%  Similarity=0.303  Sum_probs=90.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHH---------HHhhhcCCCCccc--eEEecCCCCCchHHHHhhCCCCCcceEee
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVK---------LKCQSYGHDKLEF--QVFFNDLVSNDFNALYKSLPSDRQYYAAG  126 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~---------~~~~~~~~~~p~~--~v~~nDlp~NDFn~lF~~l~~~~~~f~~g  126 (360)
                      .-..+|+|||-|.-+-.+...-|+.|-         +.|+.  ...|++  .-+.-|-..-|                  
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~--~qdp~i~~~~~v~DEE~Ld------------------  132 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD--AQDPSIETSYFVGDEEFLD------------------  132 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc--cCCCceEEEEEecchhccc------------------
Confidence            457899999999988887765443321         11211  112332  23334433323                  


Q ss_pred             cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                               |-.+|+|+++||.++||..+.|....                                      .....||
T Consensus       133 ---------f~ens~DLiisSlslHW~NdLPg~m~--------------------------------------~ck~~lK  165 (325)
T KOG2940|consen  133 ---------FKENSVDLIISSLSLHWTNDLPGSMI--------------------------------------QCKLALK  165 (325)
T ss_pred             ---------ccccchhhhhhhhhhhhhccCchHHH--------------------------------------HHHHhcC
Confidence                     45699999999999999999885432                                      2347899


Q ss_pred             cCCeEEEEecCCCCCCCCCCCchhhHHHH-HHHHHHHHHHcCCCCHhhhcccCCCcccC--CHHHHHHHHHhCCceeEEE
Q 018119          207 SGGLMALIVPCLPDGISPGECSVLASADL-LGDCLMDMAKMGLLSEAQVDSFNLPSYFP--TPQELKALLKRNASFSIEK  283 (360)
Q Consensus       207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~p--s~eE~~~~ie~~g~F~I~~  283 (360)
                      |.|.++..++|-+.           +|++ .+-.|.+|..+|-|++         -.-|  ...++-.++...| |....
T Consensus       166 PDg~FiasmlggdT-----------LyELR~slqLAelER~GGiSp---------hiSPf~qvrDiG~LL~rAG-F~m~t  224 (325)
T KOG2940|consen  166 PDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGISP---------HISPFTQVRDIGNLLTRAG-FSMLT  224 (325)
T ss_pred             CCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCCC---------CcChhhhhhhhhhHHhhcC-cccce
Confidence            99999999987542           3453 4455679999999863         3333  4567777787775 76544


Q ss_pred             E
Q 018119          284 F  284 (360)
Q Consensus       284 ~  284 (360)
                      +
T Consensus       225 v  225 (325)
T KOG2940|consen  225 V  225 (325)
T ss_pred             e
Confidence            3

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.89  E-value=9.6e-05  Score=66.83  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=23.3

Q ss_pred             cccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          261 SYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       261 ~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ..+++.+|+.+++++.| |+|.....+.
T Consensus       143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~  169 (194)
T TIGR02081       143 IHFCTIADFEDLCGELN-LRILDRAAFD  169 (194)
T ss_pred             cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence            45789999999999995 9999888773

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK06922 hypothetical protein; Provisional

Probab=97.86  E-value=4e-05  Score=81.10  Aligned_cols=114  Identities=20%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC-CCc-ceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS-DRQ-YYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~-~~~-~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..+..+...               .|..+|+--|+..+ .=...+. ++. ..+ .+..+.... ...
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~---------------~P~~kVtGIDIS~~-MLe~Ararl~~~g~~ie~I~gDa~d-Lp~  481 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEE---------------TEDKRIYGIDISEN-VIDTLKKKKQNEGRSWNVIKGDAIN-LSS  481 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHh---------------CCCCEEEEEECCHH-HHHHHHHHhhhcCCCeEEEEcchHh-Ccc
Confidence            469999999999766554321               13456666666531 1111111 110 011 122222111 112


Q ss_pred             cCCCCceeEEEeccccccc-CCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCSYGLQWL-SSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWL-S~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .||++++|++++++++||+ +.+|..-.     .++                     .+|...+|+.-.+-|+|||++++
T Consensus       482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        482 SFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             ccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEEEE
Confidence            3788999999999999974 44542110     011                     24678889999999999999999


Q ss_pred             E
Q 018119          214 I  214 (360)
Q Consensus       214 ~  214 (360)
                      .
T Consensus       536 ~  536 (677)
T PRK06922        536 R  536 (677)
T ss_pred             E
Confidence            6

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.84  E-value=5.2e-05  Score=69.19  Aligned_cols=93  Identities=16%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      +..-++.|+|||.|..|..+..            ..|+.-++++..    .|.+++..-|+|.                 
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----~~~V~~~~~dvp~-----------------  100 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----LPHVEWIQADVPE-----------------  100 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT-----------------
T ss_pred             cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC----CCCeEEEECcCCC-----------------
Confidence            5578899999999999999865            566666666543    4679999999983                 


Q ss_pred             EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                                 ..|..++|+++.+-.+++|+..                                   .|+..++..-.+
T Consensus       101 -----------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l~~  134 (201)
T PF05401_consen  101 -----------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRLVA  134 (201)
T ss_dssp             --------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHHHH
T ss_pred             -----------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHHHH
Confidence                       2478999999999999998761                                   357788888889


Q ss_pred             HhccCCeEEEEe
Q 018119          204 ELASGGLMALIV  215 (360)
Q Consensus       204 EL~pGG~lvl~~  215 (360)
                      -|.|||.||+.-
T Consensus       135 ~L~pgG~LV~g~  146 (201)
T PF05401_consen  135 ALAPGGHLVFGH  146 (201)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             HhCCCCEEEEEE
Confidence            999999999964

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK05785 hypothetical protein; Provisional

Probab=97.84  E-value=0.00016  Score=67.48  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      .-+|+|+|||+|.++..+....                ..+|+--|+. -+.=.+.+.-    .-++   -+++...-||
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S-~~Ml~~a~~~----~~~~---~~d~~~lp~~  107 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYA-ENMLKMNLVA----DDKV---VGSFEALPFR  107 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCC-HHHHHHHHhc----cceE---EechhhCCCC
Confidence            5699999999998887653321                1345555542 2222222221    1122   3456666789


Q ss_pred             CCceeEEEecccccccCC
Q 018119          138 KASINFFHCSYGLQWLSS  155 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~  155 (360)
                      ++|+|+++|+++|||+.+
T Consensus       108 d~sfD~v~~~~~l~~~~d  125 (226)
T PRK05785        108 DKSFDVVMSSFALHASDN  125 (226)
T ss_pred             CCCEEEEEecChhhccCC
Confidence            999999999999999654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.81  E-value=0.00012  Score=70.01  Aligned_cols=115  Identities=17%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH----------hhCCCC--Ccce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY----------KSLPSD--RQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF----------~~l~~~--~~~f  123 (360)
                      ..+++|.|.|||+|--+..+.-.+.+....    .  ..+.++|+-.|+-.. -=...          +.+|+.  ..||
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~----~--~~~~~~I~g~Dis~~-~L~~Ar~~~y~~~~~~~~~~~~~~~yf  170 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK----A--REPDVKILATDIDLK-ALEKARAGIYPERELEDLPKALLARYF  170 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhh----c--CCCCeEEEEEECCHH-HHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence            346999999999997544332222222111    0  123577887777431 11111          122211  1344


Q ss_pred             EeecCC-----------------ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHH
Q 018119          124 AAGVPG-----------------SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY  186 (360)
Q Consensus       124 ~~gvpg-----------------SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay  186 (360)
                      ... +|                 ..-+..+|.+++|+|+|.++|||++. |                             
T Consensus       171 ~~~-~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~-----------------------------  219 (264)
T smart00138      171 SRV-EDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-P-----------------------------  219 (264)
T ss_pred             EeC-CCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-H-----------------------------
Confidence            321 12                 12233356889999999999999754 1                             


Q ss_pred             HHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          187 SAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       187 ~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                            +....|+.=++-|+|||.|++.
T Consensus       220 ------~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      220 ------TQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             ------HHHHHHHHHHHHhCCCeEEEEE
Confidence                  2344677777899999999874

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.80  E-value=4.7e-05  Score=61.36  Aligned_cols=98  Identities=23%  Similarity=0.318  Sum_probs=52.9

Q ss_pred             EeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCccccccCCC
Q 018119           61 IADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHNRLFPK  138 (360)
Q Consensus        61 IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~rlfP~  138 (360)
                      |+|+|||+|.++..+.... +.           .|+.++..-|+-.+=....=+...  ..+--|..+....   --++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~-~~-----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~---l~~~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF-DA-----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD---LPFSD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC---HHHHS
T ss_pred             CEEeecCCcHHHHHHHHHh-hh-----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH---CcccC
Confidence            7999999999999887653 10           122444444443211111001110  0011122222211   12466


Q ss_pred             CceeEEEeccc-ccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          139 ASINFFHCSYG-LQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       139 ~S~h~~~Ss~a-lHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      +++|+++++.+ +|++++                                    +++..+|+.-++-|+|||
T Consensus        66 ~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   66 GKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred             CCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence            79999999766 998665                                    357778899999999998

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.79  E-value=0.00021  Score=66.24  Aligned_cols=131  Identities=21%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             hHHHhhHH---HHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHH---------HHHHHHHH
Q 018119           19 SYARNSEF---QSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQN---------IIDSVKLK   86 (360)
Q Consensus        19 sY~~nS~~---Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~---------ii~~i~~~   86 (360)
                      -|.+||.+   |....+.++.++.        ++     .+++--|+|+|||+|--+-.+-+.         .-.++...
T Consensus        22 kYt~nsri~~IQ~em~eRaLELLa--------lp-----~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a   88 (270)
T KOG1541|consen   22 KYTQNSRIVLIQAEMAERALELLA--------LP-----GPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQA   88 (270)
T ss_pred             hccccceeeeehHHHHHHHHHHhh--------CC-----CCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHH
Confidence            58899986   4555555544432        32     346888999999999766444220         00111111


Q ss_pred             hhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCC
Q 018119           87 CQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSP  166 (360)
Q Consensus        87 ~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~  166 (360)
                      ...    .-|=-+.+.|+-                          -+--|++.+||-++|-.|++||=..-+....    
T Consensus        89 ~~~----e~egdlil~DMG--------------------------~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~----  134 (270)
T KOG1541|consen   89 VER----ELEGDLILCDMG--------------------------EGLPFRPGTFDGVISISAVQWLCNADKSLHV----  134 (270)
T ss_pred             HHh----hhhcCeeeeecC--------------------------CCCCCCCCccceEEEeeeeeeecccCccccC----
Confidence            000    001123444442                          3456899999999999999998765433211    


Q ss_pred             CccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119          167 AYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       167 ~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                                             =++.+.+|+..=..-|++|++-|+.|--..
T Consensus       135 -----------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpen  164 (270)
T KOG1541|consen  135 -----------------------PKKRLLRFFGTLYSCLKRGARAVLQFYPEN  164 (270)
T ss_pred             -----------------------hHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence                                   134588899999999999999999995444

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.76  E-value=0.00034  Score=64.50  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccc---
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNR---  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~r---  134 (360)
                      .-+|+|+|||+|.-|..+++..-              +.-+|+--|+-.  .+    .++  .-.+..   |.+...   
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~--------------~~~~V~aVDi~~--~~----~~~--~v~~i~---~D~~~~~~~  106 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIG--------------DKGRVIACDILP--MD----PIV--GVDFLQ---GDFRDELVL  106 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcC--------------CCceEEEEeccc--cc----CCC--CcEEEe---cCCCChHHH
Confidence            45899999999998776654321              223555555522  11    111  112222   234442   


Q ss_pred             -----cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          135 -----LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       135 -----lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                           -++.+++|+|+|+.+.||... |.  .|                   .    ..+ .......|+.-.+-|+|||
T Consensus       107 ~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~~L~~~~~~LkpGG  159 (209)
T PRK11188        107 KALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVELALDMCRDVLAPGG  159 (209)
T ss_pred             HHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHHHHHHHHHHcCCCC
Confidence                 257789999999999999432 11  00                   0    000 1114568888889999999


Q ss_pred             eEEEEecC
Q 018119          210 LMALIVPC  217 (360)
Q Consensus       210 ~lvl~~~g  217 (360)
                      .+++....
T Consensus       160 ~~vi~~~~  167 (209)
T PRK11188        160 SFVVKVFQ  167 (209)
T ss_pred             EEEEEEec
Confidence            99996543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.74  E-value=0.00033  Score=64.17  Aligned_cols=95  Identities=18%  Similarity=0.267  Sum_probs=55.6

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|+++++.++|+...                                      ...+|+.-.+-|+|||.+++....
T Consensus       110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            378999999999988432                                      334677777889999999887543


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +...        ......+.   .++. .+.....    ......+.+.+++.+++++. +|+|..+..+
T Consensus       152 ~~~~--------~~~~~~~~---~~~~-~~~~~~~----~~~~~~~~~~~~l~~~l~~~-G~~i~~~~~~  204 (224)
T TIGR01983       152 RTPK--------SYLLAIVG---AEYI-LRIVPKG----THDWEKFIKPSELTSWLESA-GLRVKDVKGL  204 (224)
T ss_pred             CCch--------HHHHHHHh---hhhh-hhcCCCC----cCChhhcCCHHHHHHHHHHc-CCeeeeeeeE
Confidence            3210        00111110   0111 1111110    00111245889999999988 5999877743

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.71  E-value=6.5e-05  Score=77.19  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC-C-CcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS-D-RQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~-~-~~~f~~gvpgSFy~rl  135 (360)
                      .-+|+|+|||+|.+|..+....                 -+|+-.|.-. .+=..-+.+.. . +--|..+.-... ..-
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~-----------------~~v~giD~s~-~~l~~a~~~~~~~~~i~~~~~d~~~~-~~~   98 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKA-----------------GQVIALDFIE-SVIKKNESINGHYKNVKFMCADVTSP-DLN   98 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhC-----------------CEEEEEeCCH-HHHHHHHHHhccCCceEEEEeccccc-ccC
Confidence            3589999999999998875421                 1233333211 01000011110 0 112333221111 123


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      +|++++|+|+|+.++||++.                                    .++..+|+..++-|+|||+|++.
T Consensus        99 ~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         99 ISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            68899999999999999754                                    13566888888999999999875

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.70  E-value=0.00094  Score=61.78  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +.+.+|+++++..+++...                                      ...+|+...+-|+|||+|++...
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             cCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence            4578999999988888432                                      23467777788999999998876


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++...        ...+.....   +.+..+.- .    .......+.+.+|+.+++++.| |++....-+
T Consensus       153 ~~~~~--------~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~  206 (233)
T PRK05134        153 NRNLK--------SYLLAIVGA---EYVLRMLP-K----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL  206 (233)
T ss_pred             CCChH--------HHHHHHhhH---HHHhhhcC-c----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence            53211        011111111   11111111 0    0011224678999999999885 998877633

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.66  E-value=0.0005  Score=62.35  Aligned_cols=102  Identities=20%  Similarity=0.351  Sum_probs=61.3

Q ss_pred             eeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           58 VFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      .-+|+|+|||+|..++.+...              .++...++....+  ...+.+...|..                  
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l~ni~~i~~d~~------------------   76 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--LKNLHVLCGDAN------------------   76 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--CCCEEEEccCHH------------------
Confidence            458999999999998877653              1222222222111  112444444432                  


Q ss_pred             EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                            .+-..++|++++|.+++++..+|..+. ....          ++-                   ...||+.-++
T Consensus        77 ------~~~~~~~~~~~~d~v~~~~pdpw~k~~-h~~~----------r~~-------------------~~~~l~~~~r  120 (194)
T TIGR00091        77 ------ELLDKFFPDGSLSKVFLNFPDPWPKKR-HNKR----------RIT-------------------QPHFLKEYAN  120 (194)
T ss_pred             ------HHHHhhCCCCceeEEEEECCCcCCCCC-cccc----------ccC-------------------CHHHHHHHHH
Confidence                  111234677899999999999995431 1000          110                   2457888889


Q ss_pred             HhccCCeEEEEe
Q 018119          204 ELASGGLMALIV  215 (360)
Q Consensus       204 EL~pGG~lvl~~  215 (360)
                      -|+|||.+++..
T Consensus       121 ~LkpgG~l~~~t  132 (194)
T TIGR00091       121 VLKKGGVIHFKT  132 (194)
T ss_pred             HhCCCCEEEEEe
Confidence            999999998875

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03438 probable methyltransferase

Probab=97.64  E-value=0.00028  Score=68.59  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH-hhCCC-CCcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY-KSLPS-DRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF-~~l~~-~~~~f~~gvpgSFy~rl  135 (360)
                      ..+|+|+|||+|..|..+++....              ..+++--|+.. ++=... +.+.. .+..=+.++-|.|...+
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~-~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~  128 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISA-DALKESAAALAADYPQLEVHGICADFTQPL  128 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCH-HHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence            468999999999999988776531              14455556542 331111 22211 11122233444555422


Q ss_pred             -CCCC----ceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          136 -FPKA----SINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       136 -fP~~----S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                       +|..    ...++++..++|+++.                                    .|...||+.-++-|+|||+
T Consensus       129 ~~~~~~~~~~~~~~~~gs~~~~~~~------------------------------------~e~~~~L~~i~~~L~pgG~  172 (301)
T TIGR03438       129 ALPPEPAAGRRLGFFPGSTIGNFTP------------------------------------EEAVAFLRRIRQLLGPGGG  172 (301)
T ss_pred             hhhcccccCCeEEEEecccccCCCH------------------------------------HHHHHHHHHHHHhcCCCCE
Confidence             3332    4557777778888642                                    2355688888899999999


Q ss_pred             EEEEecCCCC
Q 018119          211 MALIVPCLPD  220 (360)
Q Consensus       211 lvl~~~g~~~  220 (360)
                      |++.+-...+
T Consensus       173 ~lig~d~~~~  182 (301)
T TIGR03438       173 LLIGVDLVKD  182 (301)
T ss_pred             EEEeccCCCC
Confidence            9988755443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.64  E-value=0.00011  Score=69.27  Aligned_cols=172  Identities=19%  Similarity=0.259  Sum_probs=98.7

Q ss_pred             CCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC----CCcceE----ee
Q 018119           55 SSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS----DRQYYA----AG  126 (360)
Q Consensus        55 ~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~----~~~~f~----~g  126 (360)
                      +.+.++++|.+||+|-.|+.++..+-+.    .+     .-+-+|...|.     |.---.+..    .++|+.    .-
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~----~~-----~~~~~V~v~Di-----np~mL~vgkqRa~~~~l~~~~~~~w  163 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQ----FG-----DRESKVTVLDI-----NPHMLAVGKQRAKKRPLKASSRVEW  163 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccc----cC-----CCCceEEEEeC-----CHHHHHHHHHHHhhcCCCcCCceEE
Confidence            3556999999999999999987655421    11     12355666555     332222111    122221    12


Q ss_pred             cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                      +.|--..--||++++|...+++.+--.-++++                      ...+||                +-||
T Consensus       164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k----------------------~l~EAY----------------RVLK  205 (296)
T KOG1540|consen  164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK----------------------ALREAY----------------RVLK  205 (296)
T ss_pred             EeCCcccCCCCCCcceeEEEecceecCCCHHH----------------------HHHHHH----------------HhcC
Confidence            33447777899999999999998876444332                      245566                7799


Q ss_pred             cCCeEEEEecCCCCCCCCCCCchhhHHH---HHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEE
Q 018119          207 SGGLMALIVPCLPDGISPGECSVLASAD---LLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEK  283 (360)
Q Consensus       207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~---~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~  283 (360)
                      |||++.|.-+..-+..+.........++   .+.+.+....+.+..=-|-+.      -+|+.||+...|++.| |....
T Consensus       206 pGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~~~  278 (296)
T KOG1540|consen  206 PGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSSVN  278 (296)
T ss_pred             CCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Ccccc
Confidence            9999998866655421111001111222   223333332222222111111      2689999999999985 87765


Q ss_pred             -EE
Q 018119          284 -FE  285 (360)
Q Consensus       284 -~e  285 (360)
                       +|
T Consensus       279 ~ye  281 (296)
T KOG1540|consen  279 GYE  281 (296)
T ss_pred             ccc
Confidence             54

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.60  E-value=0.001  Score=54.58  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhccCCeEEEEe
Q 018119          194 IESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +..+++.-++.|+|||++++.+
T Consensus       101 ~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469       101 LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEe
Confidence            3467888899999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00048  Score=65.18  Aligned_cols=114  Identities=21%  Similarity=0.244  Sum_probs=75.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ  121 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~  121 (360)
                      +..-+|+|+|||.|.-++.+.+.              ..+..++-.. .++-...++|+.-|+  ++|..   .      
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~-ln~l~~ri~v~~~Di--~~~~~---~------  110 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA-LNPLEERIQVIEADI--KEFLK---A------  110 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH-hCcchhceeEehhhH--HHhhh---c------
Confidence            44899999999999999999875              2222222221 111123477777766  34433   2      


Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR  201 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R  201 (360)
                                    ++..++|+|+||         |+--.         -...  ..+.+..+..+.+..-++..+++.-
T Consensus       111 --------------~~~~~fD~Ii~N---------PPyf~---------~~~~--~~~~~~~~~Ar~e~~~~le~~i~~a  156 (248)
T COG4123         111 --------------LVFASFDLIICN---------PPYFK---------QGSR--LNENPLRAIARHEITLDLEDLIRAA  156 (248)
T ss_pred             --------------ccccccCEEEeC---------CCCCC---------Cccc--cCcChhhhhhhhhhcCCHHHHHHHH
Confidence                          222489999985         43322         1122  2334566666778888999999999


Q ss_pred             HHHhccCCeEEEEe
Q 018119          202 AQELASGGLMALIV  215 (360)
Q Consensus       202 a~EL~pGG~lvl~~  215 (360)
                      ++-|+|||++.++.
T Consensus       157 ~~~lk~~G~l~~V~  170 (248)
T COG4123         157 AKLLKPGGRLAFVH  170 (248)
T ss_pred             HHHccCCCEEEEEe
Confidence            99999999998875

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.49  E-value=0.0017  Score=61.01  Aligned_cols=46  Identities=15%  Similarity=0.283  Sum_probs=37.9

Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +++|||+|.+.-|+||.                                       |+.+|.+.-.+-|++.|.+++...
T Consensus        97 ~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen   97 GEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             CCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCCCCEEEEEE
Confidence            47999999999999992                                       578899999999999997777765


Q ss_pred             CCCCC
Q 018119          217 CLPDG  221 (360)
Q Consensus       217 g~~~~  221 (360)
                      =+++.
T Consensus       138 Y~dd~  142 (261)
T KOG3010|consen  138 YNDDF  142 (261)
T ss_pred             ccCCC
Confidence            55443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.47  E-value=0.0032  Score=61.82  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             cccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          261 SYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       261 ~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .|+.+.+|++++++..| |+|.+.+...
T Consensus       275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~  301 (315)
T PLN02585        275 AYLHAEADVERALKKAG-WKVARREMTA  301 (315)
T ss_pred             eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence            46679999999999996 9998877653

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.47  E-value=0.00039  Score=66.34  Aligned_cols=76  Identities=21%  Similarity=0.275  Sum_probs=42.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+....-    .        ....+++-.|+..+=-...-+..+  +--|..+   +..+-.|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~----~--------~~~~~v~giD~s~~~l~~A~~~~~--~~~~~~~---d~~~lp~  147 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALP----E--------ITTMQLFGLDISKVAIKYAAKRYP--QVTFCVA---SSHRLPF  147 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcc----c--------ccCCeEEEECCCHHHHHHHHHhCC--CCeEEEe---ecccCCC
Confidence            346899999999998877654321    0        011456667764321111111111  1113332   3444458


Q ss_pred             CCCceeEEEeccc
Q 018119          137 PKASINFFHCSYG  149 (360)
Q Consensus       137 P~~S~h~~~Ss~a  149 (360)
                      |++++|+|+|..+
T Consensus       148 ~~~sfD~I~~~~~  160 (272)
T PRK11088        148 ADQSLDAIIRIYA  160 (272)
T ss_pred             cCCceeEEEEecC
Confidence            8999999998654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.44  E-value=0.00079  Score=59.29  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=38.2

Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|++++++++||+.+                                      ...+|+.-++-|+|||++++.
T Consensus        39 p~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232         39 PFDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CCCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEE
Confidence            367789999999999999632                                      345677778999999999988


Q ss_pred             ecCCCC
Q 018119          215 VPCLPD  220 (360)
Q Consensus       215 ~~g~~~  220 (360)
                      -.+.++
T Consensus        81 d~~~~~   86 (160)
T PLN02232         81 DFNKSN   86 (160)
T ss_pred             ECCCCC
Confidence            666544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.43  E-value=0.0015  Score=58.54  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=17.3

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+..
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~   51 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAAL   51 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHH
Confidence            346899999999999887753

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.42  E-value=0.0014  Score=59.57  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhccCCeEEEEe
Q 018119          194 IESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +..|++..++-|+|||++++..
T Consensus       124 ~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        124 LSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe
Confidence            4568888889999999999885

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.39  E-value=0.0019  Score=57.31  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=58.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--CCcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--DRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rl  135 (360)
                      .-+|+|+|||+|.-++.+...               .|...|...|.-.+=....=+++..  ...  +..+....+..+
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~---------------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~--v~~~~~d~~~~~   94 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKR---------------GPDAKVTAVDINPDALELAKRNAERNGLEN--VEVVQSDLFEAL   94 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHT---------------STCEEEEEEESBHHHHHHHHHHHHHTTCTT--EEEEESSTTTTC
T ss_pred             CCeEEEecCChHHHHHHHHHh---------------CCCCEEEEEcCCHHHHHHHHHHHHhcCccc--cccccccccccc
Confidence            467999999999998887541               1334455555532222221111110  011  222223344433


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                       |++++|+++|+-=+|+-..                         +-        ..-+..|++.=.+-|+|||.+++..
T Consensus        95 -~~~~fD~Iv~NPP~~~~~~-------------------------~~--------~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen   95 -PDGKFDLIVSNPPFHAGGD-------------------------DG--------LDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             -CTTCEEEEEE---SBTTSH-------------------------CH--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cccceeEEEEccchhcccc-------------------------cc--------hhhHHHHHHHHHHhccCCCEEEEEe
Confidence             3689999999755444111                         00        0124567777789999999998876

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.39  E-value=0.0035  Score=58.07  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119          194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL  273 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i  273 (360)
                      ...+++.-.+-|+|||++++.....+....                                  .-|-|.-+.+|+++.+
T Consensus       131 R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------------------------------~gpp~~~~~~eL~~~f  176 (213)
T TIGR03840       131 RQRYAAHLLALLPPGARQLLITLDYDQSEM----------------------------------AGPPFSVSPAEVEALY  176 (213)
T ss_pred             HHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------------------------------CCcCCCCCHHHHHHHh
Confidence            345677888999999987776554432100                                  1144678899999988


Q ss_pred             HhCCceeEEEEEEec
Q 018119          274 KRNASFSIEKFEPLA  288 (360)
Q Consensus       274 e~~g~F~I~~~e~~~  288 (360)
                      ..  .|+|+.++..+
T Consensus       177 ~~--~~~i~~~~~~~  189 (213)
T TIGR03840       177 GG--HYEIELLESRD  189 (213)
T ss_pred             cC--CceEEEEeecc
Confidence            63  48888887553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.39  E-value=0.00087  Score=61.80  Aligned_cols=21  Identities=10%  Similarity=0.243  Sum_probs=17.1

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..|..+..
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~   96 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAE   96 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHH
Confidence            357999999999999976643

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.38  E-value=0.0012  Score=60.54  Aligned_cols=20  Identities=15%  Similarity=0.232  Sum_probs=16.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..|..+..
T Consensus        73 ~~~VLDiG~GsG~~~~~la~   92 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAE   92 (205)
T ss_pred             CCEEEEECcCccHHHHHHHH
Confidence            46899999999999976644

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.38  E-value=0.0025  Score=59.45  Aligned_cols=103  Identities=20%  Similarity=0.231  Sum_probs=69.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ++.-+|+|+|+|+|..+..++        ++       .|..++..-|||..     ........+  +.-+||.|+ .-
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-----~~~~~~~~r--v~~~~gd~f-~~  155 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-----IEQAKEADR--VEFVPGDFF-DP  155 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-----HCCHHHTTT--EEEEES-TT-TC
T ss_pred             cCccEEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-----hhccccccc--cccccccHH-hh
Confidence            345689999999998776552        22       37899999999951     111111122  334788899 88


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC--CeEEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG--GLMAL  213 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG--G~lvl  213 (360)
                      +|.  .|+++-...||=.+.                                    +|-...|+.-++.|+||  |++++
T Consensus       156 ~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  156 LPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             CSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECTTEEEEE
T ss_pred             hcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCCCCeEEE
Confidence            997  999999999983222                                    23456888999999999  99988


Q ss_pred             EecCCC
Q 018119          214 IVPCLP  219 (360)
Q Consensus       214 ~~~g~~  219 (360)
                      .=.-.+
T Consensus       198 ~e~~~~  203 (241)
T PF00891_consen  198 IEMVLP  203 (241)
T ss_dssp             EEEEEC
T ss_pred             EeeccC
Confidence            844333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.36  E-value=0.0018  Score=59.49  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ..-+|+|+|||+|.++..+....               |..+++--|+-. +.=...+. ++.  .-+.   .|+... .
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~giDiS~-~~l~~A~~~~~~--~~~~---~~d~~~-~  100 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLL---------------PFKHIYGVEINE-YAVEKAKAYLPN--INII---QGSLFD-P  100 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhC---------------CCCeEEEEECCH-HHHHHHHhhCCC--CcEE---EeeccC-C
Confidence            34679999999998887764321               123444445432 11122221 221  1122   233444 6


Q ss_pred             CCCCceeEEEecccccccC
Q 018119          136 FPKASINFFHCSYGLQWLS  154 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS  154 (360)
                      +|++++|+|+++.+||+++
T Consensus       101 ~~~~sfD~V~~~~vL~hl~  119 (204)
T TIGR03587       101 FKDNFFDLVLTKGVLIHIN  119 (204)
T ss_pred             CCCCCEEEEEECChhhhCC
Confidence            7889999999999998753

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.34  E-value=0.0015  Score=58.26  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccccCC
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      -+|+|+|||+|..++.+...               .+  +|+-.|+-. ++-...+. +... .+-+.-+-+.++..+  
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~---------------~~--~v~~vD~s~-~~~~~a~~~~~~~-~~~~~~~~~d~~~~~--   79 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGK---------------GK--CILTTDINP-FAVKELRENAKLN-NVGLDVVMTDLFKGV--   79 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhc---------------CC--EEEEEECCH-HHHHHHHHHHHHc-CCceEEEEccccccc--
Confidence            57999999999987776531               01  455555531 11111111 1000 011111223444432  


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      .+++|+++|+..+|.....+.. .+....++..|.     ..           ...+..||+.-.+-|+|||++++...+
T Consensus        80 ~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~~-----~~-----------~~~~~~~l~~~~~~Lk~gG~~~~~~~~  142 (179)
T TIGR00537        80 RGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGGK-----DG-----------RKVIDRFLDELPEILKEGGRVQLIQSS  142 (179)
T ss_pred             CCcccEEEECCCCCCCcchhcc-cchhhhhhhcCC-----ch-----------HHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence            3489999999988875432211 000000111000     00           112456888888899999999988644


Q ss_pred             C
Q 018119          218 L  218 (360)
Q Consensus       218 ~  218 (360)
                      .
T Consensus       143 ~  143 (179)
T TIGR00537       143 L  143 (179)
T ss_pred             c
Confidence            3

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.32  E-value=0.0044  Score=57.60  Aligned_cols=58  Identities=24%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119          194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL  273 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i  273 (360)
                      ...+++.-++-|+|||+.++.....+...                                  ..-|-|.-+.+|+++.+
T Consensus       134 R~~~~~~l~~lL~pgG~~~l~~~~~~~~~----------------------------------~~gPp~~~~~~el~~~~  179 (218)
T PRK13255        134 RERYVQQLAALLPAGCRGLLVTLDYPQEE----------------------------------LAGPPFSVSDEEVEALY  179 (218)
T ss_pred             HHHHHHHHHHHcCCCCeEEEEEEEeCCcc----------------------------------CCCCCCCCCHHHHHHHh
Confidence            34567778889999997555443332110                                  01144678899999988


Q ss_pred             HhCCceeEEEEEEe
Q 018119          274 KRNASFSIEKFEPL  287 (360)
Q Consensus       274 e~~g~F~I~~~e~~  287 (360)
                      .  +.|+|+.++..
T Consensus       180 ~--~~~~i~~~~~~  191 (218)
T PRK13255        180 A--GCFEIELLERQ  191 (218)
T ss_pred             c--CCceEEEeeec
Confidence            5  34999888754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.32  E-value=0.00087  Score=51.51  Aligned_cols=99  Identities=19%  Similarity=0.233  Sum_probs=59.1

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH---hhCCCCCcceEeecCCcccccc-
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY---KSLPSDRQYYAAGVPGSFHNRL-  135 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF---~~l~~~~~~f~~gvpgSFy~rl-  135 (360)
                      +|+|+|||.|.++..+..                .+..+++..|+..+-....-   +.....+..+..+   .+.... 
T Consensus         1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   61 (107)
T cd02440           1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKG---DAEELPP   61 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc---Chhhhcc
Confidence            589999999998776643                02256666676433222221   1111111122222   222222 


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+..++|+++++..+++.+                                     .+...+++.-..-|+|||.+++.
T Consensus        62 ~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          62 EADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence            3567899999999999860                                     13455677777788999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.31  E-value=0.0015  Score=60.16  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=17.2

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..|..+..
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~   97 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAE   97 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHH
Confidence            356999999999999976544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.30  E-value=0.00099  Score=62.52  Aligned_cols=196  Identities=18%  Similarity=0.197  Sum_probs=108.2

Q ss_pred             HHHhhHHHHHHHHH--------HHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcC
Q 018119           20 YARNSEFQSHGVET--------AKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYG   91 (360)
Q Consensus        20 Y~~nS~~Q~~~~~~--------~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~   91 (360)
                      |..++..+....-.        -..||..-..+.++.+     ...+.+|+++|||.|...+-+++..            
T Consensus        31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll~~~------------   93 (264)
T KOG2361|consen   31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLLKTS------------   93 (264)
T ss_pred             hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhhhcC------------
Confidence            55555555444322        3557777776654432     1223499999999998777664321            


Q ss_pred             CCCccceEEecCCCCCchHHHHhhCC-CCCcc--eEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCc
Q 018119           92 HDKLEFQVFFNDLVSNDFNALYKSLP-SDRQY--YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAY  168 (360)
Q Consensus        92 ~~~p~~~v~~nDlp~NDFn~lF~~l~-~~~~~--f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~  168 (360)
                       +.|.+.||.+|-..+--+-+=++-. ...++  |+.-.-++=-..-++.+|+|++..-+.|   |-+|+.-        
T Consensus        94 -~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pek--------  161 (264)
T KOG2361|consen   94 -PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPEK--------  161 (264)
T ss_pred             -CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChHH--------
Confidence             2344778877765443332222111 01111  3322222224445566777776655543   4444432        


Q ss_pred             cCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q 018119          169 NKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL  248 (360)
Q Consensus       169 nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~  248 (360)
                                               +..-+..-.+=|+|||.|++-=.|+.+-            ..+    +-. +.-.
T Consensus       162 -------------------------~~~a~~nl~~llKPGG~llfrDYg~~Dl------------aql----RF~-~~~~  199 (264)
T KOG2361|consen  162 -------------------------MQSVIKNLRTLLKPGGSLLFRDYGRYDL------------AQL----RFK-KGQC  199 (264)
T ss_pred             -------------------------HHHHHHHHHHHhCCCcEEEEeecccchH------------HHH----hcc-CCce
Confidence                                     3334556667899999999886666643            111    100 2222


Q ss_pred             CCHhhh-cccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          249 LSEAQV-DSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       249 i~~e~~-d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      |++..+ ..=-.+.|+-+.+|+++++.+.| |...+++.-
T Consensus       200 i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~  238 (264)
T KOG2361|consen  200 ISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD  238 (264)
T ss_pred             eecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence            322111 12235789999999999999995 877666643

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.28  E-value=0.0013  Score=66.12  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=64.1

Q ss_pred             eeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           58 VFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      .-.++|+|||+|..++.+...              .+..+.++....+  ...+.++..|..     .            
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L~NV~~i~~DA~-----~------------  183 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--LKNLLIINYDAR-----L------------  183 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--CCcEEEEECCHH-----H------------
Confidence            348999999999998888753              2333333333222  123555544442     1            


Q ss_pred             EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                             +. ..+|++++|.++.++...|..+-.             .|+.                   ...||+.-++
T Consensus       184 -------ll-~~~~~~s~D~I~lnFPdPW~KkrH-------------RRlv-------------------~~~fL~e~~R  223 (390)
T PRK14121        184 -------LL-ELLPSNSVEKIFVHFPVPWDKKPH-------------RRVI-------------------SEDFLNEALR  223 (390)
T ss_pred             -------hh-hhCCCCceeEEEEeCCCCccccch-------------hhcc-------------------HHHHHHHHHH
Confidence                   11 347889999999998888833311             0221                   3568888899


Q ss_pred             HhccCCeEEEEe
Q 018119          204 ELASGGLMALIV  215 (360)
Q Consensus       204 EL~pGG~lvl~~  215 (360)
                      -|+|||.+.+..
T Consensus       224 vLkpGG~l~l~T  235 (390)
T PRK14121        224 VLKPGGTLELRT  235 (390)
T ss_pred             HcCCCcEEEEEE
Confidence            999999998875

>PRK04266 fibrillarin; Provisional

Probab=97.28  E-value=0.0032  Score=58.90  Aligned_cols=20  Identities=15%  Similarity=0.167  Sum_probs=16.8

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..|+.+.+
T Consensus        73 g~~VlD~G~G~G~~~~~la~   92 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSD   92 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHH
Confidence            46999999999998877644

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.27  E-value=0.0015  Score=65.65  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hC----CCC-CcceEeecCCccc
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SL----PSD-RQYYAAGVPGSFH  132 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l----~~~-~~~f~~gvpgSFy  132 (360)
                      -+|+|+|||+|.-++.+.+.               .|..+|+..|... .-=...+ ++    +.. .+  +..+.+..+
T Consensus       230 ~~VLDLGCGtGvi~i~la~~---------------~P~~~V~~vD~S~-~Av~~A~~N~~~n~~~~~~~--v~~~~~D~l  291 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDK---------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDR--CEFMINNAL  291 (378)
T ss_pred             CeEEEEeccccHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHHHHHcCcccCce--EEEEEcccc
Confidence            48999999999877655321               2557777777742 0000011 01    100 01  111122334


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .. ++..++|+|+|+--+|+.-.++.                      +           ....+++.=.+-|+|||.++
T Consensus       292 ~~-~~~~~fDlIlsNPPfh~~~~~~~----------------------~-----------ia~~l~~~a~~~LkpGG~L~  337 (378)
T PRK15001        292 SG-VEPFRFNAVLCNPPFHQQHALTD----------------------N-----------VAWEMFHHARRCLKINGELY  337 (378)
T ss_pred             cc-CCCCCEEEEEECcCcccCccCCH----------------------H-----------HHHHHHHHHHHhcccCCEEE
Confidence            33 35578999999999998433211                      0           11235655567899999999


Q ss_pred             EEe
Q 018119          213 LIV  215 (360)
Q Consensus       213 l~~  215 (360)
                      ++.
T Consensus       338 iV~  340 (378)
T PRK15001        338 IVA  340 (378)
T ss_pred             EEE
Confidence            884

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.20  E-value=0.0015  Score=64.81  Aligned_cols=106  Identities=12%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCC
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPK  138 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~  138 (360)
                      -+|+|+|||+|..++.+...               .|..+|...|....=....=+++.... +=...+++..+..  .+
T Consensus       198 g~VLDlGCG~G~ls~~la~~---------------~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~--~~  259 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARH---------------SPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD--IK  259 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc--cC
Confidence            37999999999877655321               144667777763100000000111000 0001122333332  25


Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +++|+|+|+-.+||.-..                                 ...+...|++.=++-|+|||.|+++.
T Consensus       260 ~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        260 GRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            789999999999983210                                 01245678888889999999998875

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.20  E-value=0.00089  Score=61.30  Aligned_cols=20  Identities=10%  Similarity=0.061  Sum_probs=16.4

Q ss_pred             CceeEEeeecCCCCCccHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~   75 (360)
                      ....+|+|+|||+|..|..+
T Consensus        77 ~~~~~VLeiG~GsG~~t~~l   96 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVL   96 (212)
T ss_pred             CCCCEEEEECCCccHHHHHH
Confidence            34579999999999998744

>PTZ00146 fibrillarin; Provisional

Probab=97.19  E-value=0.0026  Score=61.68  Aligned_cols=20  Identities=15%  Similarity=0.167  Sum_probs=16.4

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      -.+|+|+|||+|..|..+.+
T Consensus       133 G~~VLDLGaG~G~~t~~lAd  152 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSD  152 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHH
Confidence            36899999999998866654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.17  E-value=0.0024  Score=62.08  Aligned_cols=147  Identities=20%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC----CCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP----SDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~----~~~~~f~~gvpgSFy  132 (360)
                      +--+|+|+||+.|.-++.+..       +        .| -.|+=-| |+-.|..-|+.+.    ....+|..  |-+.+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~-------~--------GA-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgvE  175 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLG-------R--------GA-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGVE  175 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhh-------c--------CC-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccchh
Confidence            346999999999998877642       1        12 2233333 4445555555432    22333333  22223


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      . |=+.+++|+|||.-.|=.++. |-                                     ..|+.-..-|+|||.||
T Consensus       176 ~-Lp~~~~FDtVF~MGVLYHrr~-Pl-------------------------------------~~L~~Lk~~L~~gGeLv  216 (315)
T PF08003_consen  176 D-LPNLGAFDTVFSMGVLYHRRS-PL-------------------------------------DHLKQLKDSLRPGGELV  216 (315)
T ss_pred             h-ccccCCcCEEEEeeehhccCC-HH-------------------------------------HHHHHHHHhhCCCCEEE
Confidence            2 222678999999877766443 11                                     13445557899999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      +..+..+....                      .-+++++.+..|+-=|+.||..-+..+++..| |+-.++
T Consensus       217 LETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~  265 (315)
T PF08003_consen  217 LETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC  265 (315)
T ss_pred             EEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence            99876543311                      12356666777888888899999999999996 864433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.14  E-value=0.0046  Score=59.69  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhccCCeEEEEec
Q 018119          194 IESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...|++.-.+-|+|||++++.+.
T Consensus       230 ~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       230 VRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEC
Confidence            45688888899999999999874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.11  E-value=0.0027  Score=57.11  Aligned_cols=23  Identities=22%  Similarity=0.106  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEe
Q 018119          193 GIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +...+|+.-.+-|+|||++++..
T Consensus       124 ~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       124 LVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HHHHHHHHHHHHccCCCEEEEEE
Confidence            56778888899999999999975

>PRK14967 putative methyltransferase; Provisional

Probab=97.10  E-value=0.0068  Score=56.06  Aligned_cols=165  Identities=16%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCC-CCcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPS-DRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~-~~~~f~~gvpgSFy~rl  135 (360)
                      .-+|+|+|||+|..++.+...                +.-+|+..|.... .-...+ ++.. .-.  +..+-+.+.. .
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~----------------~~~~v~~vD~s~~-~l~~a~~n~~~~~~~--~~~~~~d~~~-~   96 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA----------------GAGSVTAVDISRR-AVRSARLNALLAGVD--VDVRRGDWAR-A   96 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc----------------CCCeEEEEECCHH-HHHHHHHHHHHhCCe--eEEEECchhh-h
Confidence            368999999999987766431                0024455555321 111111 1100 001  1122244544 4


Q ss_pred             CCCCceeEEEecccccccCCCCccccCC-CCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQ-NSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~-~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      +|.+++|+++++--.+..+...  ..+. ...+|+.|      ..          -..++..|++.=.+-|+|||++++.
T Consensus        97 ~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~~----------~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967         97 VEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------PD----------GRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             ccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------Cc----------HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5778999999975433322111  0000 00011111      00          1124667888778889999999987


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCC
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNA  277 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g  277 (360)
                      .....+               +.+++..+...|. .-+.+.+..+|+ .|..-.....+++.|
T Consensus       159 ~~~~~~---------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  204 (223)
T PRK14967        159 QSELSG---------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG  204 (223)
T ss_pred             EecccC---------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence            543321               1223333434443 344445555663 332223345566665

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=96.99  E-value=0.0034  Score=57.15  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -||++|+|.|+-+-+|+=+.+ |..+..                                        +=|+-|.+.+++
T Consensus        70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL~----------------------------------------EmlRVgr~~IVs  108 (193)
T PF07021_consen   70 DFPDQSFDYVILSQTLQAVRR-PDEVLE----------------------------------------EMLRVGRRAIVS  108 (193)
T ss_pred             hCCCCCccEEehHhHHHhHhH-HHHHHH----------------------------------------HHHHhcCeEEEE
Confidence            489999999999999998655 443321                                        457889999999


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc------CCHHHHHHHHHhCCceeEEEEEEec
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF------PTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~------ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      |+.-+            .|..    -..|.-.|..+..  +.+..+||.      -|..+++++.++.| ++|.+-..+.
T Consensus       109 FPNFg------------~W~~----R~~l~~~GrmPvt--~~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~  169 (193)
T PF07021_consen  109 FPNFG------------HWRN----RLQLLLRGRMPVT--KALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD  169 (193)
T ss_pred             ecChH------------HHHH----HHHHHhcCCCCCC--CCCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence            85432            2332    1133445766554  334445554      69999999999984 8888776663

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.88  E-value=0.001  Score=61.31  Aligned_cols=86  Identities=24%  Similarity=0.333  Sum_probs=46.6

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC-CchHHHHhhCCCCCcceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS-NDFNALYKSLPSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~-NDFn~lF~~l~~~~~~f~~gvpgSFy~r  134 (360)
                      ++..+|||+|||++..+        .++..          .+.|+-=||-. ||.=+         .|=++-||      
T Consensus        71 ~~~~viaD~GCGdA~la--------~~~~~----------~~~V~SfDLva~n~~Vt---------acdia~vP------  117 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLA--------KAVPN----------KHKVHSFDLVAPNPRVT---------ACDIANVP------  117 (219)
T ss_dssp             -TTS-EEEES-TT-HHH--------HH--S-------------EEEEESS-SSTTEE---------ES-TTS-S------
T ss_pred             CCCEEEEECCCchHHHH--------Hhccc----------CceEEEeeccCCCCCEE---------EecCccCc------
Confidence            55789999999998766        22221          24555556643 22211         11112333      


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                       ++++|+|+++.+-+|.=                                       .||..||+-=.+=|||||.|.+.
T Consensus       118 -L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IA  157 (219)
T PF05148_consen  118 -LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIA  157 (219)
T ss_dssp             ---TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEE
Confidence             68999999988877642                                       25788888888999999999877

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.87  E-value=0.0044  Score=50.60  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=57.9

Q ss_pred             eEEeeecCCCCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119           59 FSIADLGCSVGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA  125 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~  125 (360)
                      .+|+|+|||+|..++.+....             ++..+......+. ...++++..|.-  |+                
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~--~~----------------   62 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-DDRVEVIVGDAR--DL----------------   62 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-TTTEEEEESHHH--HH----------------
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-CceEEEEECchh--hc----------------
Confidence            589999999999888887642             2222222222111 112344443331  11                


Q ss_pred             ecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119          126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL  205 (360)
Q Consensus       126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  205 (360)
                             .+.++.+++|+++++-=.+.....+..                              -.++...|++.-.+-|
T Consensus        63 -------~~~~~~~~~D~Iv~npP~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~L  105 (117)
T PF13659_consen   63 -------PEPLPDGKFDLIVTNPPYGPRSGDKAA------------------------------LRRLYSRFLEAAARLL  105 (117)
T ss_dssp             -------HHTCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHHHE
T ss_pred             -------hhhccCceeEEEEECCCCccccccchh------------------------------hHHHHHHHHHHHHHHc
Confidence                   124677899999997554432111110                              0125678999999999


Q ss_pred             ccCCeEEEEec
Q 018119          206 ASGGLMALIVP  216 (360)
Q Consensus       206 ~pGG~lvl~~~  216 (360)
                      +|||.+++.++
T Consensus       106 ~~gG~~~~~~~  116 (117)
T PF13659_consen  106 KPGGVLVFITP  116 (117)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCeEEEEEeC
Confidence            99999999864

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.86  E-value=0.014  Score=53.01  Aligned_cols=49  Identities=14%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             CceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVS  106 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~  106 (360)
                      .+--++.|+||++|.-|+.++-              ..++.+++.+..-+  .+.++|.--|-|.
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~   95 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPE   95 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchH
Confidence            3346999999999999999982              45666666655554  3447777777663

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.84  E-value=0.0063  Score=58.73  Aligned_cols=18  Identities=28%  Similarity=0.493  Sum_probs=14.7

Q ss_pred             eeEEeeecCCCCCccHHH
Q 018119           58 VFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~   75 (360)
                      .-+|+|+|||+|..++.+
T Consensus       160 g~~VLDvGcGsG~lai~a  177 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAA  177 (288)
T ss_pred             CCEEEEeCCChhHHHHHH
Confidence            368999999999877654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.72  E-value=0.0048  Score=57.30  Aligned_cols=126  Identities=11%  Similarity=0.143  Sum_probs=64.4

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~r  134 (360)
                      +..+|+|+|||+|..++.+....               |..+++-.|.-..=....=+.+.  ...+  +.-+.+.+.. 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~d~~~-  148 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISPEALAVARKNAARLGLDN--VTFLQSDWFE-  148 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHHcCCCe--EEEEECchhc-
Confidence            34689999999998888775421               23455655543211111111110  0011  1112233444 


Q ss_pred             cCCCCceeEEEecccccccCCC---CccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          135 LFPKASINFFHCSYGLQWLSST---PKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~---P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      .+|++++|+|+|+--.+..+..   +..+... .|    ..... .         ....-.++..|++.-.+-|+|||.+
T Consensus       149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~-e~----~~~~~-~---------~~~~~~~~~~~i~~~~~~L~~gG~~  213 (251)
T TIGR03534       149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH-EP----RLALF-G---------GEDGLDFYRRIIAQAPRLLKPGGWL  213 (251)
T ss_pred             cCcCCceeEEEECCCCCchhhhhhcChhhhhc-CC----HHHHc-C---------CCcHHHHHHHHHHHHHHhcccCCEE
Confidence            4577899999997554432221   1111000 00    00000 0         0112245677899889999999999


Q ss_pred             EEEe
Q 018119          212 ALIV  215 (360)
Q Consensus       212 vl~~  215 (360)
                      ++..
T Consensus       214 ~~~~  217 (251)
T TIGR03534       214 LLEI  217 (251)
T ss_pred             EEEE
Confidence            9864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.71  E-value=0.02  Score=55.96  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhccCCeEEEEec
Q 018119          195 ESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ..+++.-.+-|+|||++++.+.
T Consensus       243 ~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        243 RRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHhcCCCCEEEEEEC
Confidence            4578877888999999999853

>PRK00811 spermidine synthase; Provisional

Probab=96.69  E-value=0.011  Score=57.11  Aligned_cols=22  Identities=9%  Similarity=0.066  Sum_probs=18.1

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +++-+|+|+|||+|..+..+++
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~   96 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLK   96 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHc
Confidence            4567999999999998877654

>PRK14968 putative methyltransferase; Provisional

Probab=96.67  E-value=0.024  Score=50.06  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhccCCeEEEEec
Q 018119          194 IESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +..|++.-.+-|+|||.+++...
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEc
Confidence            56788888999999999988763

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.65  E-value=0.0024  Score=60.65  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.++++|+|+++.+-+|.=                                       .||..|++--.+-|++||.+.+
T Consensus       222 vPl~d~svDvaV~CLSLMg---------------------------------------tn~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  222 VPLEDESVDVAVFCLSLMG---------------------------------------TNLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             CcCccCcccEEEeeHhhhc---------------------------------------ccHHHHHHHHHHHhccCceEEE
Confidence            3478899999887665542                                       2578899999999999999987


Q ss_pred             E
Q 018119          214 I  214 (360)
Q Consensus       214 ~  214 (360)
                      .
T Consensus       263 A  263 (325)
T KOG3045|consen  263 A  263 (325)
T ss_pred             E
Confidence            6

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.47  E-value=0.0021  Score=66.00  Aligned_cols=80  Identities=21%  Similarity=0.383  Sum_probs=44.4

Q ss_pred             CCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH--hhCCCCCcceEeecCCccc
Q 018119           55 SSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY--KSLPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        55 ~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF--~~l~~~~~~f~~gvpgSFy  132 (360)
                      ....-+++|+|||+|..+..+++.=|-+              +.+-.+|-- -.+.++.  +-+|   .+  .|+.| =.
T Consensus       115 ~g~iR~~LDvGcG~aSF~a~l~~r~V~t--------------~s~a~~d~~-~~qvqfaleRGvp---a~--~~~~~-s~  173 (506)
T PF03141_consen  115 GGGIRTALDVGCGVASFGAYLLERNVTT--------------MSFAPNDEH-EAQVQFALERGVP---AM--IGVLG-SQ  173 (506)
T ss_pred             CCceEEEEeccceeehhHHHHhhCCceE--------------EEcccccCC-chhhhhhhhcCcc---hh--hhhhc-cc
Confidence            3557778999999998887776533321              222222211 0111111  1122   11  11111 14


Q ss_pred             cccCCCCceeEEEeccccc-ccCC
Q 018119          133 NRLFPKASINFFHCSYGLQ-WLSS  155 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alH-WLS~  155 (360)
                      .-.||++++|++||+-|+. |.+.
T Consensus       174 rLPfp~~~fDmvHcsrc~i~W~~~  197 (506)
T PF03141_consen  174 RLPFPSNAFDMVHCSRCLIPWHPN  197 (506)
T ss_pred             cccCCccchhhhhcccccccchhc
Confidence            5679999999999999986 8554

; GO: 0008168 methyltransferase activity

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.015  Score=53.73  Aligned_cols=49  Identities=29%  Similarity=0.411  Sum_probs=33.3

Q ss_pred             eeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          141 INFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       141 ~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +++.+---+..|=+..|   .|         +|+++.+.+++-+++.+|               |++||+||+-..
T Consensus       122 V~v~~gDG~~G~~~~aP---yD---------~I~Vtaaa~~vP~~Ll~Q---------------L~~gGrlv~PvG  170 (209)
T COG2518         122 VTVRHGDGSKGWPEEAP---YD---------RIIVTAAAPEVPEALLDQ---------------LKPGGRLVIPVG  170 (209)
T ss_pred             eEEEECCcccCCCCCCC---cC---------EEEEeeccCCCCHHHHHh---------------cccCCEEEEEEc
Confidence            56666666667744433   22         577777666666666554               999999999876

>PLN03075 nicotianamine synthase; Provisional

Probab=96.42  E-value=0.036  Score=53.90  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC-C-----CCcceEeecCCc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP-S-----DRQYYAAGVPGS  130 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~-~-----~~~~f~~gvpgS  130 (360)
                      .+-+|||+|||.||-|...+..-.             .|.-++.--|.-. +-+.+.+.+- .     .+--|..+--..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~-------------~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~  188 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHH-------------LPTTSFHNFDIDP-SANDVARRLVSSDPDLSKRMFFHTADVMD  188 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhc-------------CCCCEEEEEeCCH-HHHHHHHHHhhhccCccCCcEEEECchhh
Confidence            568899999999988776554211             1223333334321 2222222221 0     112344443222


Q ss_pred             cccccCC-CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          131 FHNRLFP-KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       131 Fy~rlfP-~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                          +.+ ...+|+||+. ++|-..+.+                                    -...|+.-++-|+|||
T Consensus       189 ----~~~~l~~FDlVF~~-ALi~~dk~~------------------------------------k~~vL~~l~~~LkPGG  227 (296)
T PLN03075        189 ----VTESLKEYDVVFLA-ALVGMDKEE------------------------------------KVKVIEHLGKHMAPGA  227 (296)
T ss_pred             ----cccccCCcCEEEEe-ccccccccc------------------------------------HHHHHHHHHHhcCCCc
Confidence                222 3689999999 655433311                                    1235666678899999


Q ss_pred             eEEEEe
Q 018119          210 LMALIV  215 (360)
Q Consensus       210 ~lvl~~  215 (360)
                      .+++-+
T Consensus       228 ~Lvlr~  233 (296)
T PLN03075        228 LLMLRS  233 (296)
T ss_pred             EEEEec
Confidence            999886

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.41  E-value=0.0089  Score=59.08  Aligned_cols=44  Identities=18%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ..+|+|-+-.|||..=..                                  ++-...||+.-++-|+|||.++.+++
T Consensus       144 ~~FDvVScQFalHY~Fes----------------------------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  144 RKFDVVSCQFALHYAFES----------------------------------EEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             S-EEEEEEES-GGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcceeehHHHHHHhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            599999999999983321                                  12256799999999999999999985

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.34  E-value=0.014  Score=54.29  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=77.2

Q ss_pred             CceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQY  122 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~  122 (360)
                      .+.-+.+|.|+|.|+-|-.++.             ..++..++....                         ..+.-..+
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-------------------------~~~~v~~~  108 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-------------------------DNPRVGEF  108 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-------------------------GGCCEEEE
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-------------------------cCCCcceE
Confidence            4589999999999998875532             333333322110                         00011245


Q ss_pred             eEeecCCccccccCCC-CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119          123 YAAGVPGSFHNRLFPK-ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR  201 (360)
Q Consensus       123 f~~gvpgSFy~rlfP~-~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R  201 (360)
                      |..|.     +-.-|. +.+|+++.-||+-.|..                                    .||-.||+..
T Consensus       109 ~~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RC  147 (218)
T PF05891_consen  109 YCVGL-----QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRC  147 (218)
T ss_dssp             EES-G-----GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHH
T ss_pred             EecCH-----hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHH
Confidence            66665     233354 79999999888888665                                    4899999999


Q ss_pred             HHHhccCCeEEEEe-cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCcee
Q 018119          202 AQELASGGLMALIV-PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFS  280 (360)
Q Consensus       202 a~EL~pGG~lvl~~-~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~  280 (360)
                      .+.|+|||.+|+== ....+.+         .|+                ++  |    -...||.+.++.++++.| ++
T Consensus       148 k~~L~~~G~IvvKEN~~~~~~~---------~~D----------------~~--D----sSvTRs~~~~~~lF~~AG-l~  195 (218)
T PF05891_consen  148 KQALKPNGVIVVKENVSSSGFD---------EFD----------------EE--D----SSVTRSDEHFRELFKQAG-LR  195 (218)
T ss_dssp             HHHEEEEEEEEEEEEEESSSEE---------EEE----------------TT--T----TEEEEEHHHHHHHHHHCT--E
T ss_pred             HHhCcCCcEEEEEecCCCCCCc---------ccC----------------Cc--c----CeeecCHHHHHHHHHHcC-CE
Confidence            99999999888741 1111110         001                00  1    123688999999999995 88


Q ss_pred             EEEEEEe
Q 018119          281 IEKFEPL  287 (360)
Q Consensus       281 I~~~e~~  287 (360)
                      |.+-+.-
T Consensus       196 ~v~~~~Q  202 (218)
T PF05891_consen  196 LVKEEKQ  202 (218)
T ss_dssp             EEEEEE-
T ss_pred             EEEeccc
Confidence            8877754

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.32  E-value=0.008  Score=56.49  Aligned_cols=90  Identities=22%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+|.|.-.|+.   +|.                                   =..|+++.++=+||||.|++...-|
T Consensus       123 ~~FDvV~cmEVlEH---v~d-----------------------------------p~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         123 GQFDVVTCMEVLEH---VPD-----------------------------------PESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             CCccEEEEhhHHHc---cCC-----------------------------------HHHHHHHHHHHcCCCcEEEEecccc
Confidence            69999998887777   542                                   2348999999999999999998765


Q ss_pred             CCCCCCCCCchhhHH--HHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          219 PDGISPGECSVLASA--DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~--~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      .--        ..+.  -..+-.++ ++-.|--+-++         +-.++|+...+... .|++....
T Consensus       165 t~k--------a~~~~i~~ae~vl~-~vP~gTH~~~k---------~irp~El~~~~~~~-~~~~~~~~  214 (243)
T COG2227         165 TLK--------AYLLAIIGAEYVLR-IVPKGTHDYRK---------FIKPAELIRWLLGA-NLKIIDRK  214 (243)
T ss_pred             CHH--------HHHHHHHHHHHHHH-hcCCcchhHHH---------hcCHHHHHHhcccC-CceEEeec
Confidence            421        1111  11122222 44444333222         34678888887775 46666555

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.29  E-value=0.047  Score=52.54  Aligned_cols=24  Identities=8%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEec
Q 018119          193 GIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +...+++.-.+-|+|||.+++.++
T Consensus       222 ~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       222 ILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEEC
Confidence            456688888889999999999873

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.28  E-value=0.032  Score=52.71  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHHHhccCCeEEEEe
Q 018119          192 KGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       192 ~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      .++..|++.-.+-|+|||++++..
T Consensus       215 ~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        215 DFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHHHHHHHHHhcccCCEEEEEE
Confidence            345668888889999999999965

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.27  E-value=0.02  Score=54.01  Aligned_cols=19  Identities=26%  Similarity=0.230  Sum_probs=14.7

Q ss_pred             HHHHHHHHhccCCeEEEEe
Q 018119          197 FLLARAQELASGGLMALIV  215 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +++.-.+-|+|||++++.-
T Consensus       195 l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        195 LAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             HHHHHHHhcCCCcEEEEEE
Confidence            4555567799999999874

>PHA03411 putative methyltransferase; Provisional

Probab=96.25  E-value=0.023  Score=54.69  Aligned_cols=121  Identities=12%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      .-+|+|+|||+|..++.+...               .+..+|+..|+-. ++-.+.+..-+ +.-+..   +.+..- .+
T Consensus        65 ~grVLDLGcGsGilsl~la~r---------------~~~~~V~gVDisp-~al~~Ar~n~~-~v~~v~---~D~~e~-~~  123 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHR---------------CKPEKIVCVELNP-EFARIGKRLLP-EAEWIT---SDVFEF-ES  123 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHhCc-CCEEEE---Cchhhh-cc
Confidence            358999999999776655321               0125666677642 44444443211 111222   234322 24


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHh--hHHHHHHHHHHHhccCCeEEEEe
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAK--GIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~--D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ..++|+|+|+-.++++.....  .+  ...|+.|..                -.+  .+..||+..+.=|+|+|...+.+
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCceEEEEE
Confidence            578999999999999643111  10  012221110                001  15789999999999999888886


Q ss_pred             cCCC
Q 018119          216 PCLP  219 (360)
Q Consensus       216 ~g~~  219 (360)
                      -|++
T Consensus       184 ss~~  187 (279)
T PHA03411        184 SGRP  187 (279)
T ss_pred             eccc
Confidence            5554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.20  E-value=0.076  Score=48.96  Aligned_cols=170  Identities=18%  Similarity=0.167  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119           32 ETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA  111 (360)
Q Consensus        32 ~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~  111 (360)
                      ++.++-|-+++++.++       ..+. +|+++|||||--+..+.+.               -|.+++-=+|...+-+.+
T Consensus         8 eRNk~pIl~vL~~~l~-------~~~~-~vLEiaSGtGqHa~~FA~~---------------lP~l~WqPSD~~~~~~~s   64 (204)
T PF06080_consen    8 ERNKDPILEVLKQYLP-------DSGT-RVLEIASGTGQHAVYFAQA---------------LPHLTWQPSDPDDNLRPS   64 (204)
T ss_pred             hhCHhHHHHHHHHHhC-------ccCc-eEEEEcCCccHHHHHHHHH---------------CCCCEEcCCCCChHHHhh
Confidence            3445555566666443       1222 8999999999777666332               256777788888887766


Q ss_pred             HHhhCC-----CCC-c--------ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecC
Q 018119          112 LYKSLP-----SDR-Q--------YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSR  177 (360)
Q Consensus       112 lF~~l~-----~~~-~--------~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~  177 (360)
                      +-.-+.     +-+ +        ......|..     ++..++|.++|.+.+|-.+-   ..                 
T Consensus        65 I~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~-----~~~~~~D~i~~~N~lHI~p~---~~-----------------  119 (204)
T PF06080_consen   65 IRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP-----LSPESFDAIFCINMLHISPW---SA-----------------  119 (204)
T ss_pred             HHHHHHhcCCcccCCCeEeecCCCCCccccccc-----cCCCCcceeeehhHHHhcCH---HH-----------------
Confidence            654321     111 1        111221111     25689999999999998332   11                 


Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc
Q 018119          178 GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF  257 (360)
Q Consensus       178 ~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f  257 (360)
                                      -..+++.=++-|++||.|++.-+=..++..+++. .    ..+...|++              -
T Consensus       120 ----------------~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N----~~FD~sLr~--------------r  164 (204)
T PF06080_consen  120 ----------------VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-N----AAFDASLRS--------------R  164 (204)
T ss_pred             ----------------HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-H----HHHHHHHhc--------------C
Confidence                            2336677789999999998886544444333321 1    233344442              1


Q ss_pred             CCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          258 NLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      +--|=.+..+++.++-+.+| ++++...
T Consensus       165 dp~~GiRD~e~v~~lA~~~G-L~l~~~~  191 (204)
T PF06080_consen  165 DPEWGIRDIEDVEALAAAHG-LELEEDI  191 (204)
T ss_pred             CCCcCccCHHHHHHHHHHCC-CccCccc
Confidence            22245688999999888885 6654443

The function of this family is unknown.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.10  E-value=0.05  Score=55.49  Aligned_cols=26  Identities=23%  Similarity=0.057  Sum_probs=21.2

Q ss_pred             HhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          191 AKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ......+|..-++-|+|||+||....
T Consensus       348 ~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        348 AALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            34566788888899999999998864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.07  E-value=0.1  Score=47.28  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=16.5

Q ss_pred             ceeEEeeecCCCCCccHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ..-+|+|+|||+|..++.+.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a   59 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEAS   59 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHH
Confidence            35699999999998887754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=95.91  E-value=0.026  Score=52.17  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=15.5

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      -.+|+|+|||+|.+|..+..
T Consensus        73 g~~VLeIGtGsGY~aAlla~   92 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLAH   92 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHH
Confidence            47999999999999987753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.78  E-value=0.096  Score=53.70  Aligned_cols=123  Identities=12%  Similarity=-0.016  Sum_probs=64.4

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..|+.+.+.+-              +.-+|+-.|.-..=...+=+.+..   ..--+..+....    
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~--------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~----  312 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQ--------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS----  312 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhC--------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc----
Confidence            36899999999999987654321              112455555543222111111110   111122222222    


Q ss_pred             cCCCCceeEEEe----cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          135 LFPKASINFFHC----SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       135 lfP~~S~h~~~S----s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +.|++++|.|+.    +..-+|- +.|+...              . ..++..+    +..++...+|..=++-|+|||+
T Consensus       313 ~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~--------------~-~~~~~~~----~l~~~q~~iL~~a~~~lkpgG~  372 (445)
T PRK14904        313 FSPEEQPDAILLDAPCTGTGVLG-RRAELRW--------------K-LTPEKLA----ELVGLQAELLDHAASLLKPGGV  372 (445)
T ss_pred             cccCCCCCEEEEcCCCCCcchhh-cCcchhh--------------c-CCHHHHH----HHHHHHHHHHHHHHHhcCCCcE
Confidence            235678999884    2333332 2232211              0 1122222    2334566789999999999999


Q ss_pred             EEEEecCC
Q 018119          211 MALIVPCL  218 (360)
Q Consensus       211 lvl~~~g~  218 (360)
                      ||......
T Consensus       373 lvystcs~  380 (445)
T PRK14904        373 LVYATCSI  380 (445)
T ss_pred             EEEEeCCC
Confidence            99987544

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.78  E-value=0.14  Score=50.63  Aligned_cols=150  Identities=21%  Similarity=0.204  Sum_probs=94.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce---EeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY---AAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f---~~gvpgSFy  132 (360)
                      ...-..+|.|-|.|..+-.+++        +       -|.+..+-=|+|.     +-+.=    +++   +--|.|-++
T Consensus       176 ~~v~~avDvGgGiG~v~k~ll~--------~-------fp~ik~infdlp~-----v~~~a----~~~~~gV~~v~gdmf  231 (342)
T KOG3178|consen  176 KGVNVAVDVGGGIGRVLKNLLS--------K-------YPHIKGINFDLPF-----VLAAA----PYLAPGVEHVAGDMF  231 (342)
T ss_pred             ccCceEEEcCCcHhHHHHHHHH--------h-------CCCCceeecCHHH-----HHhhh----hhhcCCcceeccccc
Confidence            4578899999999988766654        2       2556666667763     21111    122   455666788


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      +- .|+.-  ++|.-++||-+.+                                    +|...||+..++-|.|||.++
T Consensus       232 q~-~P~~d--aI~mkWiLhdwtD------------------------------------edcvkiLknC~~sL~~~GkIi  272 (342)
T KOG3178|consen  232 QD-TPKGD--AIWMKWILHDWTD------------------------------------EDCVKILKNCKKSLPPGGKII  272 (342)
T ss_pred             cc-CCCcC--eEEEEeecccCCh------------------------------------HHHHHHHHHHHHhCCCCCEEE
Confidence            88 99554  9998888883222                                    478899999999999999998


Q ss_pred             EEecCCCCCCCCCC--CchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          213 LIVPCLPDGISPGE--CSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       213 l~~~g~~~~~~~~~--~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      +.=.-.+.+...+.  .......+++..+..   +-|+              -++.+|++..+.++| |.+-.+-.
T Consensus       273 v~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~  330 (342)
T KOG3178|consen  273 VVENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGGK--------------ERTLKEFQALLPEEG-FPVCMVAL  330 (342)
T ss_pred             EEeccCCCCCCccccccceeehhHHHHHHHh---ccce--------------eccHHHHHhcchhhc-CceeEEEe
Confidence            87332221111111  111112243333332   2254              588999999999885 87655543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.72  E-value=0.072  Score=54.53  Aligned_cols=124  Identities=16%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|.-|+.+.+..-              +.-+|+-.|+-.+=-..+=+++..   ..--+..+....+ ..
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~--------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-~~  315 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLK--------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV-HE  315 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhC--------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc-cc
Confidence            36899999999999987765320              113444455432111111111110   0111222221111 11


Q ss_pred             cCCCCceeEEEecc---cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          135 LFPKASINFFHCSY---GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       135 lfP~~S~h~~~Ss~---alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      -+| +++|+|++..   .+..+++.|+...       .+        .+...+    ...+--..+|+.=.+-|+|||+|
T Consensus       316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~~--------~~~~~~----~l~~~q~~iL~~a~~~LkpGG~l  375 (444)
T PRK14902        316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------NK--------TKEDIE----SLQEIQLEILESVAQYLKKGGIL  375 (444)
T ss_pred             hhc-ccCCEEEEcCCCCCCeeeccCcchhh-------cC--------CHHHHH----HHHHHHHHHHHHHHHHcCCCCEE
Confidence            133 6789998752   3344444443221       11        122111    22233456788888899999999


Q ss_pred             EEEec
Q 018119          212 ALIVP  216 (360)
Q Consensus       212 vl~~~  216 (360)
                      |....
T Consensus       376 vystc  380 (444)
T PRK14902        376 VYSTC  380 (444)
T ss_pred             EEEcC
Confidence            97653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.53  E-value=0.071  Score=55.66  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC---CCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS---DRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~---~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..++.+....               |..+|+--|... +.-.+.+. ...   ...  +.-+-|+++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~~N~~~~~l~~~--v~~~~~D~~~  200 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAKSNAIKYEVTDR--IQIIHSNWFE  200 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHHHHHHHcCCccc--eeeeecchhh
Confidence            4689999999999888765421               335667777632 22222221 100   011  1122344443


Q ss_pred             ccCCCCceeEEEecccccccCCCCcc---ccCC-CCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKE---LNDQ-NSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~---~~~~-~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      . +|.+++|+++|+--....+..+..   +.+. ...++-        +.++-.+        .+..+++.-.+-|+|||
T Consensus       201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~--------gg~dGl~--------~~~~il~~a~~~L~~gG  263 (506)
T PRK01544        201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALF--------AEEDGLQ--------AYFIIAENAKQFLKPNG  263 (506)
T ss_pred             h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhc--------CCccHHH--------HHHHHHHHHHHhccCCC
Confidence            2 356789999997433332222111   1100 000000        0111222        24557877788999999


Q ss_pred             eEEEEe
Q 018119          210 LMALIV  215 (360)
Q Consensus       210 ~lvl~~  215 (360)
                      .+++.+
T Consensus       264 ~l~lEi  269 (506)
T PRK01544        264 KIILEI  269 (506)
T ss_pred             EEEEEE
Confidence            999875

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=95.47  E-value=0.13  Score=52.33  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhccCCeEEEEe
Q 018119          194 IESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +.++++.-.+-|+|||.+++..
T Consensus       360 yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        360 IRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEE
Confidence            4467777778899999998876

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.47  E-value=0.08  Score=54.15  Aligned_cols=63  Identities=11%  Similarity=0.067  Sum_probs=40.8

Q ss_pred             CCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          138 KASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       138 ~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      ++++|.|++   ++.+..+.+.|+....               .+++..    ....++....|..=++-|+|||+||.+
T Consensus       305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        305 QDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             hccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            457898886   3556666666644321               122222    234445677888889999999999998


Q ss_pred             ecCCC
Q 018119          215 VPCLP  219 (360)
Q Consensus       215 ~~g~~  219 (360)
                      .....
T Consensus       366 TCs~~  370 (431)
T PRK14903        366 TCTVT  370 (431)
T ss_pred             ECCCC
Confidence            86543

>PRK04457 spermidine synthase; Provisional

Probab=95.47  E-value=0.055  Score=51.62  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhccCCeEEEEecCCC
Q 018119          195 ESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      ..|++.-.+-|+|||++++.+.+++
T Consensus       157 ~efl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        157 QPFFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             HHHHHHHHHhcCCCcEEEEEcCCCc
Confidence            3577888888999999999876543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=95.42  E-value=0.19  Score=49.28  Aligned_cols=25  Identities=28%  Similarity=0.240  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCC
Q 018119          194 IESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      ...+|+.=++-|+|||++++.++..
T Consensus       273 ~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       273 YERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             HHHHHHHHHHHccCCcEEEEEEcCC
Confidence            3557888788999999999998654

This family is found exclusively in the Archaea.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=95.41  E-value=0.083  Score=48.89  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR  201 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R  201 (360)
                      +|+.|-+.+--+  +|+.|+|.|++..+|-=  .                                    +|-..-|+.-
T Consensus       129 ~fvva~ge~l~~--l~d~s~DtVV~TlvLCS--v------------------------------------e~~~k~L~e~  168 (252)
T KOG4300|consen  129 RFVVADGENLPQ--LADGSYDTVVCTLVLCS--V------------------------------------EDPVKQLNEV  168 (252)
T ss_pred             EEEeechhcCcc--cccCCeeeEEEEEEEec--c------------------------------------CCHHHHHHHH
Confidence            466666544332  38999999998877642  1                                    1223346666


Q ss_pred             HHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119          202 AQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSI  281 (360)
Q Consensus       202 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I  281 (360)
                      .+-|+|||++++.=-|++.-+     ....+++...+-+-.+...|-.               =.-|.-++|++. .|++
T Consensus       169 ~rlLRpgG~iifiEHva~~y~-----~~n~i~q~v~ep~~~~~~dGC~---------------ltrd~~e~Leda-~f~~  227 (252)
T KOG4300|consen  169 RRLLRPGGRIIFIEHVAGEYG-----FWNRILQQVAEPLWHLESDGCV---------------LTRDTGELLEDA-EFSI  227 (252)
T ss_pred             HHhcCCCcEEEEEecccccch-----HHHHHHHHHhchhhheeccceE---------------EehhHHHHhhhc-cccc
Confidence            688999999999866665431     1122233333333334444432               123445567766 6988


Q ss_pred             EEEEEeccc
Q 018119          282 EKFEPLALS  290 (360)
Q Consensus       282 ~~~e~~~~~  290 (360)
                      ...+.++..
T Consensus       228 ~~~kr~~~~  236 (252)
T KOG4300|consen  228 DSCKRFNFG  236 (252)
T ss_pred             chhhcccCC
Confidence            888877544

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=95.38  E-value=0.3  Score=47.05  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             eEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           59 FSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      -.|+|+|||+|.-|+.++..              .|.-..+.++..+. .--|.|.++|+.+-=|+.+-           
T Consensus       150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-~g~i~v~~~~me~d~~~~~~-----------  217 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-SGRIEVIHNIMESDASDEHP-----------  217 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-cCceEEEecccccccccccc-----------
Confidence            37999999999999998872              33333333332221 12489999998764333311           


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHH--------HhhHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAES--------AKGIES  196 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~--------~~D~~~  196 (360)
                                 .+.+.+|+.+||         |+-+.+.+-+.          ..|||. .|..-.        -.-+..
T Consensus       218 -----------l~~~~~dllvsN---------PPYI~~dD~~~----------l~~eV~-~yEp~lALdGg~eG~~~~~~  266 (328)
T KOG2904|consen  218 -----------LLEGKIDLLVSN---------PPYIRKDDNRQ----------LKPEVR-LYEPKLALDGGLEGYDNLVH  266 (328)
T ss_pred             -----------cccCceeEEecC---------CCcccccchhh----------cCchhe-ecCchhhhccccchhHHHHH
Confidence                       455677777775         33332221110          011110 000000        011445


Q ss_pred             HHHHHHHHhccCCeEEEEecCCCCC
Q 018119          197 FLLARAQELASGGLMALIVPCLPDG  221 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~~~g~~~~  221 (360)
                      |+..-.+-|+|||.+++...+++..
T Consensus       267 ~~~~a~R~Lq~gg~~~le~~~~~~~  291 (328)
T KOG2904|consen  267 YWLLATRMLQPGGFEQLELVERKEH  291 (328)
T ss_pred             HHHhhHhhcccCCeEEEEecccccC
Confidence            6777778999999999999988654

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.32  E-value=0.21  Score=45.07  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhccCCeEEEEec
Q 018119          194 IESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +..+|+.-.+-|+|||++++...
T Consensus       121 ~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        121 IKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEee
Confidence            45677777778999999999863

>TIGR00417 speE spermidine synthase

Probab=95.24  E-value=0.15  Score=48.71  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhccCCeEEEE
Q 018119          195 ESFLLARAQELASGGLMALI  214 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      ..|++.-++-|+|||.+++.
T Consensus       166 ~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       166 KEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             HHHHHHHHHHhCCCcEEEEc
Confidence            35777777999999999987

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.15  E-value=0.088  Score=51.87  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|.+|..+..
T Consensus        81 g~~VLDIG~GtG~~a~~LA~  100 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSR  100 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHH
Confidence            46899999999999988754

>PRK03612 spermidine synthase; Provisional

Probab=94.96  E-value=0.27  Score=51.50  Aligned_cols=62  Identities=21%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHH
Q 018119          196 SFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLK  274 (360)
Q Consensus       196 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie  274 (360)
                      .|++.-.+-|+|||++++.... +..    .      -+.+.++.+.|.+.|.  .-..-..++|.|    .++--.+-
T Consensus       396 ef~~~~~~~L~pgG~lv~~~~~-~~~----~------~~~~~~i~~~l~~~gf--~v~~~~~~vps~----g~w~f~~a  457 (521)
T PRK03612        396 EFYRLLKRRLAPDGLLVVQSTS-PYF----A------PKAFWSIEATLEAAGL--ATTPYHVNVPSF----GEWGFVLA  457 (521)
T ss_pred             HHHHHHHHhcCCCeEEEEecCC-ccc----c------hHHHHHHHHHHHHcCC--EEEEEEeCCCCc----chhHHHee
Confidence            3666666789999999987521 111    0      1455566666667776  222233455666    45554444

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.83  E-value=0.21  Score=50.86  Aligned_cols=127  Identities=16%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC-cceEeecCCccccc--
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR-QYYAAGVPGSFHNR--  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~-~~f~~gvpgSFy~r--  134 (360)
                      .-+|+|+|||+|.-|+.+...+               +.-+|+-.|.-.+=...+-+++.... .+-+..+.+.-..-  
T Consensus       239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            4699999999999998775422               01344555553221222212221100 11111111211111  


Q ss_pred             cCCCCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          135 LFPKASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       135 lfP~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..+.+++|.|++   ++++.-+.+.|+....              . .++..+    +..+.-..+|..=++-|+|||+|
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~--------------~-~~~~~~----~l~~lQ~~lL~~a~~~LkpgG~l  364 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWL--------------R-KPRDIA----ELAELQSEILDAIWPLLKTGGTL  364 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhc--------------C-CHHHHH----HHHHHHHHHHHHHHHhcCCCcEE
Confidence            125678999986   3445555566643221              1 122222    33334567888888889999999


Q ss_pred             EEEecCC
Q 018119          212 ALIVPCL  218 (360)
Q Consensus       212 vl~~~g~  218 (360)
                      |......
T Consensus       365 vystcs~  371 (426)
T TIGR00563       365 VYATCSV  371 (426)
T ss_pred             EEEeCCC
Confidence            9987654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.79  E-value=0.14  Score=49.82  Aligned_cols=100  Identities=13%  Similarity=0.226  Sum_probs=59.4

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC-----CCCc--ceEeecCCccc
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP-----SDRQ--YYAAGVPGSFH  132 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~-----~~~~--~f~~gvpgSFy  132 (360)
                      +|+|+|||-|+-.+.+.+.               .|..++.+.|.   |+..|=.+=.     ....  +|.+-    =|
T Consensus       161 ~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDv---n~~Av~~ar~Nl~~N~~~~~~v~~s~----~~  218 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDV---NARAVESARKNLAANGVENTEVWASN----LY  218 (300)
T ss_pred             cEEEeCCCccHHHHHHHHh---------------CCCCeEEEEec---CHHHHHHHHHhHHHcCCCccEEEEec----cc
Confidence            9999999999988776331               35677777775   4444332211     1112  23322    35


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      ..+..  ++|+|+||==+|         ..+.             ....+           -..++..=++-|++||.|.
T Consensus       219 ~~v~~--kfd~IisNPPfh---------~G~~-------------v~~~~-----------~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         219 EPVEG--KFDLIISNPPFH---------AGKA-------------VVHSL-----------AQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             ccccc--cccEEEeCCCcc---------CCcc-------------hhHHH-----------HHHHHHHHHHhhccCCEEE
Confidence            55555  899999874333         1110             00011           1246666778999999999


Q ss_pred             EEec
Q 018119          213 LIVP  216 (360)
Q Consensus       213 l~~~  216 (360)
                      ++.-
T Consensus       264 iVan  267 (300)
T COG2813         264 IVAN  267 (300)
T ss_pred             EEEc
Confidence            8875

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.57  E-value=0.1  Score=51.17  Aligned_cols=112  Identities=17%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC------CCcceEeecCCc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS------DRQYYAAGVPGS  130 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~------~~~~f~~gvpgS  130 (360)
                      ..-.+.|||||-|.--+-.-..-|+-             =+.+=..|...||-..=++.+-.      +...|++|.  +
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~-------------~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D--c  181 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGE-------------YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD--C  181 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccc-------------eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec--c
Confidence            34567789999998655443211100             02222333333443333332211      234555554  6


Q ss_pred             ccccc---C--CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119          131 FHNRL---F--PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL  205 (360)
Q Consensus       131 Fy~rl---f--P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  205 (360)
                      |+.+|   +  ++-++|++=|=+|+|+-=.                       +           ..-...+|+.-++-|
T Consensus       182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------------t-----------ee~ar~~l~Nva~~L  227 (389)
T KOG1975|consen  182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------------T-----------EESARIALRNVAKCL  227 (389)
T ss_pred             chhHHHHhccCCCCCcceeeeeeeEeeeec-----------------------c-----------HHHHHHHHHHHHhhc
Confidence            77654   3  5556999999999997111                       0           011345789999999


Q ss_pred             ccCCeEEEEecC
Q 018119          206 ASGGLMALIVPC  217 (360)
Q Consensus       206 ~pGG~lvl~~~g  217 (360)
                      +|||.|+-+++-
T Consensus       228 kpGG~FIgTiPd  239 (389)
T KOG1975|consen  228 KPGGVFIGTIPD  239 (389)
T ss_pred             CCCcEEEEecCc
Confidence            999999999843

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.39  E-value=0.34  Score=49.51  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=21.9

Q ss_pred             HHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          190 SAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      +.+.-..+|..=++-|+|||+||.....
T Consensus       359 l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        359 LAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3445578899999999999999977543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.34  E-value=0.13  Score=47.00  Aligned_cols=111  Identities=17%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCccccccC
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~rlf  136 (360)
                      .++|+|||.|...+.....               .|+..++=-|.-.+=.....+.+.   -.+-.++.+-...+...++
T Consensus        20 l~lEIG~G~G~~l~~~A~~---------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~   84 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKR---------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF   84 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHH---------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred             eEEEecCCCCHHHHHHHHH---------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence            9999999999887766441               133444444443222211111110   0122344444555677889


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |++|++-++-++-==|-.+--.           |-|+.                   =..||..=+.-|+|||.+.+..
T Consensus        85 ~~~~v~~i~i~FPDPWpK~rH~-----------krRl~-------------------~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   85 PPGSVDRIYINFPDPWPKKRHH-----------KRRLV-------------------NPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             TTTSEEEEEEES-----SGGGG-----------GGSTT-------------------SHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCchheEEEeCCCCCcccchh-----------hhhcC-------------------CchHHHHHHHHcCCCCEEEEEe
Confidence            9999999999988777443110           11221                   1247888889999999987774

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.19  E-value=0.29  Score=46.55  Aligned_cols=28  Identities=11%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             HHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          190 SAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ..+....+|+.=++-|+|||+||.....
T Consensus       174 l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       174 ISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3344566888888999999999987644

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=94.16  E-value=0.04  Score=53.62  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=18.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+..+++|+|||||-.|+.+..
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~k  182 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAK  182 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHH
Confidence            3568999999999999988765

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=94.07  E-value=0.09  Score=46.35  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=17.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|..+++
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~   33 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLE   33 (169)
T ss_pred             cCEEEEECCCccHHHHHHHh
Confidence            35899999999999998876

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=93.70  E-value=0.3  Score=46.25  Aligned_cols=45  Identities=20%  Similarity=0.474  Sum_probs=34.5

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      ..-+|+++|.+--.|                    ||....+            ..+.+|++.-+.-|.|||+||+.
T Consensus       164 ~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  164 QPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEc
Confidence            457888888888888                    2322222            35788999999999999999987

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=93.51  E-value=0.33  Score=45.93  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHhccCCeEEEEe
Q 018119          194 IESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +..++..=.+-|+|||++++..
T Consensus       195 ~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       195 LRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEE
Confidence            4567777778899999999886

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.39  E-value=0.099  Score=50.39  Aligned_cols=56  Identities=21%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .-.+++.|+|...|.+.+||||.---                                   =..-|+.-.+.|+|||.+.
T Consensus        96 ~~p~~~~s~d~~lsiavihhlsT~~R-----------------------------------R~~~l~e~~r~lrpgg~~l  140 (293)
T KOG1331|consen   96 KLPFREESFDAALSIAVIHHLSTRER-----------------------------------RERALEELLRVLRPGGNAL  140 (293)
T ss_pred             cCCCCCCccccchhhhhhhhhhhHHH-----------------------------------HHHHHHHHHHHhcCCCceE
Confidence            45678899999999999999987210                                   1123555568999999999


Q ss_pred             EEecCCCCCCC
Q 018119          213 LIVPCLPDGIS  223 (360)
Q Consensus       213 l~~~g~~~~~~  223 (360)
                      +...+......
T Consensus       141 vyvwa~~q~~~  151 (293)
T KOG1331|consen  141 VYVWALEQHQS  151 (293)
T ss_pred             EEEehhhccCc
Confidence            99887765443

>PLN02366 spermidine synthase

Probab=93.34  E-value=0.32  Score=47.64  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=59.6

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCC--chHHH-Hhh----CCCCCcceEeecC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSN--DFNAL-YKS----LPSDRQYYAAGVP  128 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~N--DFn~l-F~~----l~~~~~~f~~gvp  128 (360)
                      +++-+|+|+|||.|..+..++..               ++.-+|..-|+...  |+..= |..    +.+++--++.+.+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~---------------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da  154 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH---------------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG  154 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC---------------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence            45789999999999855444321               11134444444321  11110 111    1112223555555


Q ss_pred             CccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Q 018119          129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG  208 (360)
Q Consensus       129 gSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG  208 (360)
                      ..|-... |++++|++++-..-+|-   |..                        ..|       -..|++.-++-|+||
T Consensus       155 ~~~l~~~-~~~~yDvIi~D~~dp~~---~~~------------------------~L~-------t~ef~~~~~~~L~pg  199 (308)
T PLN02366        155 VEFLKNA-PEGTYDAIIVDSSDPVG---PAQ------------------------ELF-------EKPFFESVARALRPG  199 (308)
T ss_pred             HHHHhhc-cCCCCCEEEEcCCCCCC---chh------------------------hhh-------HHHHHHHHHHhcCCC
Confidence            5555433 56789999986554441   110                        011       134777778889999


Q ss_pred             CeEEEEe
Q 018119          209 GLMALIV  215 (360)
Q Consensus       209 G~lvl~~  215 (360)
                      |.|+...
T Consensus       200 Gvlv~q~  206 (308)
T PLN02366        200 GVVCTQA  206 (308)
T ss_pred             cEEEECc
Confidence            9997653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=92.88  E-value=4.5  Score=39.44  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             HHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc--CCHHHHHHHHH
Q 018119          197 FLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF--PTPQELKALLK  274 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~--ps~eE~~~~ie  274 (360)
                      -|+--+.-|.|||.||.+-  .+-. |        --+.|+.+|..-. +|           -||-+  +|.+|+.++++
T Consensus       231 sl~gl~~al~pgG~lIyTg--QPwH-P--------Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~  287 (311)
T PF12147_consen  231 SLAGLARALEPGGYLIYTG--QPWH-P--------QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVE  287 (311)
T ss_pred             HHHHHHHHhCCCcEEEEcC--CCCC-c--------chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHH
Confidence            4666678899999998763  2211 1        1267888876321 12           25555  79999999999


Q ss_pred             hCCcee
Q 018119          275 RNASFS  280 (360)
Q Consensus       275 ~~g~F~  280 (360)
                      ..| |+
T Consensus       288 ~aG-F~  292 (311)
T PF12147_consen  288 AAG-FE  292 (311)
T ss_pred             HcC-Cc
Confidence            986 64

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01581 speE spermidine synthase; Validated

Probab=92.71  E-value=0.2  Score=50.24  Aligned_cols=20  Identities=15%  Similarity=0.124  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhccCCeEEEE
Q 018119          195 ESFLLARAQELASGGLMALI  214 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      ..|++.-.+-|+|||.|++.
T Consensus       248 ~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        248 SELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             HHHHHHHHHhcCCCcEEEEe
Confidence            34777778889999999887

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.70  E-value=0.53  Score=51.18  Aligned_cols=19  Identities=16%  Similarity=0.120  Sum_probs=17.4

Q ss_pred             eEEeeecCCCCCccHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~   77 (360)
                      -+|+|+||++|..|+.+..
T Consensus       540 ~rVLDlf~gtG~~sl~aa~  558 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAAL  558 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHH
Confidence            5899999999999999876

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=92.43  E-value=0.11  Score=50.53  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=15.5

Q ss_pred             eEEeeecCCCCCccHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~   77 (360)
                      -+|+|+|||||-.++.+..
T Consensus       163 ~~vLDvG~GSGILaiaA~k  181 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAK  181 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHHH
Confidence            4999999999998888754

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=92.41  E-value=0.77  Score=48.02  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 018119           25 EFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDL  104 (360)
Q Consensus        25 ~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDl  104 (360)
                      ..|++.++...|.+.=.-++     .+   ..+.-.++|+|||.|..++.....               .|+.-++=-|.
T Consensus       323 ~~q~~~~e~~~p~~~i~~ek-----lf---~~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~  379 (506)
T PRK01544        323 GVQQNLLDNELPKYLFSKEK-----LV---NEKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEV  379 (506)
T ss_pred             HHHHHHHHhhhhhhCCCHHH-----hC---CCCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEe
Confidence            47888888888876411111     12   345678999999999988776551               12222222222


Q ss_pred             CCCchHHHHhhCCC--CCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHH
Q 018119          105 VSNDFNALYKSLPS--DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEV  182 (360)
Q Consensus       105 p~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v  182 (360)
                      -.+=...+.+....  -.++.+...--.+....||++|+|-+|-++.==|-++-..           |-|+.        
T Consensus       380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~-----------krRl~--------  440 (506)
T PRK01544        380 YLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQK-----------KKRIF--------  440 (506)
T ss_pred             eHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCc-----------ccccc--------
Confidence            11111111111000  0111111101123446689999999999998888443211           11222        


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          183 VEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       183 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                                 -..||+.=+.-|+|||.+.+..
T Consensus       441 -----------~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        441 -----------NKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             -----------CHHHHHHHHHhcCCCCEEEEEc
Confidence                       1247778888999999998764

>PLN02672 methionine S-methyltransferase

Probab=91.63  E-value=0.92  Score=51.49  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhccCCeEEEEecCCC
Q 018119          195 ESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      .+++..-.+-|+|||.|++.++++.
T Consensus       258 r~i~~~a~~~L~pgG~l~lEiG~~q  282 (1082)
T PLN02672        258 ARAVEEGISVIKPMGIMIFNMGGRP  282 (1082)
T ss_pred             HHHHHHHHHhccCCCEEEEEECccH
Confidence            4477777789999999999987543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=91.41  E-value=0.24  Score=49.06  Aligned_cols=93  Identities=20%  Similarity=0.309  Sum_probs=61.4

Q ss_pred             ceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      +.-+|+|.|||+|-.|+....            .|++.-.+.....                 -|.-           -+
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N-----------------~~~~-----------ii  111 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDN-----------------GLED-----------VI  111 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhc-----------------Cccc-----------eE
Confidence            357899999999999998865            3333333322221                 1111           22


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                      --+.|.-.+-.+|-..+|+++|-|-=+||-.                                   +.=+...|-+|-+=
T Consensus       112 ~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-----------------------------------EsMldsVl~ARdkw  156 (346)
T KOG1499|consen  112 TVIKGKVEDIELPVEKVDIIVSEWMGYFLLY-----------------------------------ESMLDSVLYARDKW  156 (346)
T ss_pred             EEeecceEEEecCccceeEEeehhhhHHHHH-----------------------------------hhhhhhhhhhhhhc
Confidence            2333445555677789999999877777542                                   22366678899999


Q ss_pred             hccCCeEE
Q 018119          205 LASGGLMA  212 (360)
Q Consensus       205 L~pGG~lv  212 (360)
                      |+|||.++
T Consensus       157 L~~~G~i~  164 (346)
T KOG1499|consen  157 LKEGGLIY  164 (346)
T ss_pred             cCCCceEc
Confidence            99999985

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=91.12  E-value=1.2  Score=41.88  Aligned_cols=101  Identities=18%  Similarity=0.306  Sum_probs=64.5

Q ss_pred             eEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           59 FSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      -.++|+|||.|.-.+....              ..+..+..+....+  .+.+.++-.|..     .             
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~--l~Nlri~~~DA~-----~-------------  109 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG--LKNLRLLCGDAV-----E-------------  109 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC--CCcEEEEcCCHH-----H-------------
Confidence            5899999999988777665              23333333333322  114555555442     2             


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                            +...++|++|+|=++-++.==|-.+-.           +|.||-                   -..||+.=++-
T Consensus       110 ------~l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~-------------------~~~fl~~~a~~  153 (227)
T COG0220         110 ------VLDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLT-------------------QPEFLKLYARK  153 (227)
T ss_pred             ------HHHhcCCCCCeeEEEEECCCCCCCccc-----------cccccC-------------------CHHHHHHHHHH
Confidence                  445567778999999999888844321           122332                   13478888899


Q ss_pred             hccCCeEEEEe
Q 018119          205 LASGGLMALIV  215 (360)
Q Consensus       205 L~pGG~lvl~~  215 (360)
                      |+|||.+.+..
T Consensus       154 Lk~gG~l~~aT  164 (227)
T COG0220         154 LKPGGVLHFAT  164 (227)
T ss_pred             ccCCCEEEEEe
Confidence            99999998874

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=91.02  E-value=0.73  Score=42.51  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=15.0

Q ss_pred             hhHHHHHHHHHHHhccCCeEEE
Q 018119          192 KGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       192 ~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .|+..-|..+..+|++|-++|.
T Consensus       135 ~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  135 PDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             HHHHHHHHHHHhcCCCCCEEEE
Confidence            3566678888899999877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=89.83  E-value=1.6  Score=40.82  Aligned_cols=22  Identities=9%  Similarity=0.143  Sum_probs=18.0

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .++-+|+|+||++|.-++.+..
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~   88 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTAL   88 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHH
Confidence            3467999999999998887654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=89.76  E-value=6.4  Score=39.93  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ...+++..+++.=.+-|+|||.+++..
T Consensus       313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        313 GACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            345567777777778899999998764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=89.64  E-value=1.4  Score=42.60  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEe
Q 018119          193 GIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ...+|+..=..-|+|||.+++..
T Consensus       216 ~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         216 VYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             HHHHHHHhhHHHcCCCcEEEEEE
Confidence            34558888888999999999886

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=89.05  E-value=1.1  Score=39.97  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=53.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCC-----Ccce--Eeec
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSD-----RQYY--AAGV  127 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~-----~~~f--~~gv  127 (360)
                      ....+|++||||+|--++.+...        .       ..-.|++.|++.  --.+-+ ++..+     .++-  ..-.
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~W  106 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDW  106 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--T
T ss_pred             cCCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEe
Confidence            34679999999999887777444        0       236789999875  222222 22111     1111  1111


Q ss_pred             CCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 018119          128 PGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELAS  207 (360)
Q Consensus       128 pgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  207 (360)
                      +.......++..++|+|+.+=++.+                                      .+.+..+++.-..-|+|
T Consensus       107 g~~~~~~~~~~~~~D~IlasDv~Y~--------------------------------------~~~~~~L~~tl~~ll~~  148 (173)
T PF10294_consen  107 GDELDSDLLEPHSFDVILASDVLYD--------------------------------------EELFEPLVRTLKRLLKP  148 (173)
T ss_dssp             TS-HHHHHHS-SSBSEEEEES--S---------------------------------------GGGHHHHHHHHHHHBTT
T ss_pred             cCcccccccccccCCEEEEecccch--------------------------------------HHHHHHHHHHHHHHhCC
Confidence            1112222334445666555544443                                      12345567777788999


Q ss_pred             CCeEEEEecCCCC
Q 018119          208 GGLMALIVPCLPD  220 (360)
Q Consensus       208 GG~lvl~~~g~~~  220 (360)
                      +|.+++...-|.+
T Consensus       149 ~~~vl~~~~~R~~  161 (173)
T PF10294_consen  149 NGKVLLAYKRRRK  161 (173)
T ss_dssp             -TTEEEEEE-S-T
T ss_pred             CCEEEEEeCEecH
Confidence            9997777766643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=88.53  E-value=0.62  Score=43.95  Aligned_cols=63  Identities=30%  Similarity=0.415  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119          194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL  273 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i  273 (360)
                      +..++-.-+.-|+|||.|.++.=-.+...       +  | .+.-.                    --|.-+..=+++.+
T Consensus       204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------~--f-~l~ps--------------------~RyAH~~~YVr~~l  253 (287)
T COG4976         204 LEGLFAGAAGLLAPGGLFAFSVETLPDDG-------G--F-VLGPS--------------------QRYAHSESYVRALL  253 (287)
T ss_pred             hhhHHHHHHHhcCCCceEEEEecccCCCC-------C--e-ecchh--------------------hhhccchHHHHHHH
Confidence            66677888899999999998863222110       0  0 11111                    12445566677888


Q ss_pred             HhCCceeEEEEEEe
Q 018119          274 KRNASFSIEKFEPL  287 (360)
Q Consensus       274 e~~g~F~I~~~e~~  287 (360)
                      +..| |+|..++..
T Consensus       254 ~~~G-l~~i~~~~t  266 (287)
T COG4976         254 AASG-LEVIAIEDT  266 (287)
T ss_pred             HhcC-ceEEEeecc
Confidence            8784 998888754

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=88.43  E-value=0.3  Score=46.68  Aligned_cols=49  Identities=10%  Similarity=0.145  Sum_probs=33.8

Q ss_pred             eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA  111 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~  111 (360)
                      .-+|+|+|||+|..|..+..            .+++.++++..     .+.++++..|...-++..
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA-----EDNLTIIEGDALKVDLSE  103 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc-----cCceEEEEChhhcCCHHH
Confidence            46899999999999999887            44444444321     135888888876555443

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=88.16  E-value=2.9  Score=41.53  Aligned_cols=149  Identities=18%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC--cceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR--QYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~--~~f~~gvpgSFy~r  134 (360)
                      +--.|+|.|||+|..|+.+.+.=-..|                |--.-  -......+.|-..+  .-=+..+||--.+-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~v----------------YAvEA--S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi  238 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKV----------------YAVEA--SEMAQYARKLVASNNLADRITVIPGKIEDI  238 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceE----------------EEEeh--hHHHHHHHHHHhcCCccceEEEccCccccc
Confidence            346789999999999999877321111                00000  00011111111000  11345677887777


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+| +.+|+++|         -|-+-.     .+|                     ++=++++|.+| +=|+|.|.|+=+
T Consensus       239 eLP-Ek~DviIS---------EPMG~m-----L~N---------------------ERMLEsYl~Ar-k~l~P~GkMfPT  281 (517)
T KOG1500|consen  239 ELP-EKVDVIIS---------EPMGYM-----LVN---------------------ERMLESYLHAR-KWLKPNGKMFPT  281 (517)
T ss_pred             cCc-hhccEEEe---------ccchhh-----hhh---------------------HHHHHHHHHHH-hhcCCCCcccCc
Confidence            777 67888776         232211     222                     23478889999 999999999766


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHH---------------HHHHHHHHcCCCCHhhhcccCCCccc
Q 018119          215 VPCLPDGISPGECSVLASADLLG---------------DCLMDMAKMGLLSEAQVDSFNLPSYF  263 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~---------------~al~~mv~eG~i~~e~~d~f~~P~y~  263 (360)
                      + |+-.-.|.+..  ..+.+...               ..|.--+-+|+..+.-+|.|.+-+..
T Consensus       282 ~-gdiHlAPFsDE--~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm  342 (517)
T KOG1500|consen  282 V-GDIHLAPFSDE--QLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM  342 (517)
T ss_pred             c-cceeecccchH--HHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence            5 33222233321  11112111               22232234466666777888766655

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=87.95  E-value=5.2  Score=39.43  Aligned_cols=24  Identities=8%  Similarity=-0.043  Sum_probs=20.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNII   80 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii   80 (360)
                      ...+|+|||||+|.=|..+++.+.
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~   99 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALE   99 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH
Confidence            345899999999999988887775

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PHA03412 putative methyltransferase; Provisional

Probab=87.21  E-value=0.27  Score=46.46  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=37.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHH--------------HHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIID--------------SVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~--------------~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      ..+|+|+|||+|..++.+...+..              +++..  ..  ..+.+.+...|+-..+++.-|..+-.+++|+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~A--r~--n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~  125 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLG--KR--IVPEATWINADALTTEFDTLFDMAISNPPFG  125 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHH--Hh--hccCCEEEEcchhcccccCCccEEEECCCCC
Confidence            469999999999999887654310              01111  11  1245778888876555554455554445555


Q ss_pred             E
Q 018119          124 A  124 (360)
Q Consensus       124 ~  124 (360)
                      .
T Consensus       126 ~  126 (241)
T PHA03412        126 K  126 (241)
T ss_pred             C
Confidence            4

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=86.98  E-value=5.1  Score=36.67  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=13.2

Q ss_pred             eeEEeeecCCCCCccHHH
Q 018119           58 VFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~   75 (360)
                      .-+|+|||||-|..-+.+
T Consensus        68 A~~VlDLGtGNG~~L~~L   85 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQL   85 (227)
T ss_pred             ccceeeccCCchHHHHHH
Confidence            349999999988654443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=86.00  E-value=2  Score=44.32  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=17.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      +..+|+|+|||+|+.+...++.
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A  207 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQA  207 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHT
T ss_pred             cceEEEEeCCCccHHHHHHHHH
Confidence            3589999999999999888764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=85.13  E-value=1.1  Score=42.79  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             ceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119          140 SINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       140 S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      .+|++.|++||.=.++-++                                  .+.+-|+.-+.-|||||.|++......
T Consensus       158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~  203 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS  203 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred             chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence            5999999999988766321                                  234457777889999999999876433


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          220 DGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ..-.                    +  |        .-.+|.+.-+.+.++++|+++| |.|...+.
T Consensus       204 t~Y~--------------------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~  239 (256)
T PF01234_consen  204 TYYM--------------------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLEK  239 (256)
T ss_dssp             SEEE--------------------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred             eeEE--------------------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence            2100                    0  1        1236777888999999999995 99999883

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=83.13  E-value=16  Score=35.14  Aligned_cols=113  Identities=24%  Similarity=0.427  Sum_probs=68.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-------------hCCCC--Cc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-------------SLPSD--RQ  121 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-------------~l~~~--~~  121 (360)
                      ++++|--.|||+|-=.-.+.-.+.+.....      ....++|+=.|+-   =..|=+             .+|..  ++
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~------~~~~~~I~AtDId---~~~L~~A~~G~Y~~~~~~~~~~~~~~~r  166 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKL------AGFRVKILATDID---LSVLEKARAGIYPSRELLRGLPPELLRR  166 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccc------cCCceEEEEEECC---HHHHHHHhcCCCChhHhhccCCHHHHhh
Confidence            699999999999987666655555544320      1346999999984   333332             23321  46


Q ss_pred             ceEeecCCccc--------------cccC---CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHH
Q 018119          122 YYAAGVPGSFH--------------NRLF---PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVE  184 (360)
Q Consensus       122 ~f~~gvpgSFy--------------~rlf---P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~  184 (360)
                      ||.-+..|+|-              +-+.   ..+-+|+|||=+.|=.+++                         ++  
T Consensus       167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-------------------------~~--  219 (268)
T COG1352         167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-------------------------ET--  219 (268)
T ss_pred             hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-------------------------HH--
Confidence            78777766442              1111   2244666666555555443                         11  


Q ss_pred             HHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          185 AYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       185 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                               -.+.|+.=+.-|+|||.|++-
T Consensus       220 ---------q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         220 ---------QERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             ---------HHHHHHHHHHHhCCCCEEEEc
Confidence                     123455667889999998653

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=80.29  E-value=29  Score=32.47  Aligned_cols=21  Identities=5%  Similarity=-0.097  Sum_probs=18.2

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|++-|||.|.+...+.+
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~   63 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLS   63 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHh
Confidence            346999999999999998866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		5e-48
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		1e-46
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		6e-46
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		1e-41

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  188 bits (477), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 174/349 (49%), Gaps = 31/349 (8%)
Query: 10  AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           +M GG GQ SYA NS  Q+    +   ++   + + + LN  +S+S   F+  DLGCS G
Sbjct: 8   SMKGGKGQDSYANNSLAQAMHARSMLHLLEETL-ENVHLN--SSASPPPFTAVDLGCSSG 64
Query: 70  PNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------------ 117
            NT + +  I+  +  +  + G D  EF  FF+DL SNDFN L++ LP            
Sbjct: 65  ANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECL 124
Query: 118 ---SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIY 174
               +R Y+ AGVPGSF+ RLFP  +I+FFH ++ L WLS  P+ + D+ S AYN+GR++
Sbjct: 125 AADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVF 184
Query: 175 YSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP----DGISPGECSVL 230
                 +   AY  +    +  FL ARA E+  GG M L+  CL     D    G   +L
Sbjct: 185 IHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV--CLGRTSVDPTDQGGAGLL 242
Query: 231 ASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF------ 284
                  D   D+ + GL++  + D FN+P Y P+ Q+ K ++  N SF+I+K       
Sbjct: 243 FGTH-FQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGG 301
Query: 285 EPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKK 333
            PL ++     +       S  R+   +LV+ H G  +   LF R   +
Sbjct: 302 SPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 175/356 (49%), Gaps = 28/356 (7%)
Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG G+ SYA NS  Q   +   K I    I+     + V +      +IADLGCS GP
Sbjct: 9   MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTR----LAIADLGCSSGP 64
Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKL-EFQVFFNDLVSNDFNALYKSLP----SDRQYYAA 125
           N   AV  +I +V+   +  G +   E+Q+F NDL  NDFNA+++SLP     D   +  
Sbjct: 65  NALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN 124
Query: 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG-PNEVVE 184
           GVPGSF+ RLFP+ +++F H SY L WLS  P  +        NKG IY +   P  V+ 
Sbjct: 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCPQSVLN 178
Query: 185 AYSAESAKGIESFLLARAQELASGGLMAL-IVPCLPDGISPGECSVLASADLLGDCLMDM 243
           AY  +  +    FL  RAQE+  GG M L I+    +  +  EC ++    LL   L  M
Sbjct: 179 AYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQ--LLAMALNQM 236
Query: 244 AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL---------SAQRQ 294
              GL+ E ++D FN+P Y P+P E++A + +  SF I+  E   +              
Sbjct: 237 VSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGS 296
Query: 295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLV 350
           +      V   +RA  E L+ +HFG  IIED+F R+   I E     +T     +V
Sbjct: 297 VEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIV 352

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 176/343 (51%), Gaps = 29/343 (8%)
Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG+G  SYA+NS +    +   K ++ + + + L  N    + +K   +ADLGC+ GP
Sbjct: 9   MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRAN--LPNINKCIKVADLGCASGP 66
Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKLE---FQVFFNDLVSNDFNALYKSLPS--------- 118
           NT   V++I+ S+  K      ++LE    Q+F NDL  NDFN+++K LPS         
Sbjct: 67  NTLLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKEN 125
Query: 119 DRQY---YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
            R+        +PGSF++RLFP+ S++F H  Y LQWLS  P  L  +     NKG IY 
Sbjct: 126 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNKGSIYS 185
Query: 176 SRGPN-EVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASAD 234
           S+     V +AY  +  K   +FL   ++EL S G M L   C+  G+   E     + D
Sbjct: 186 SKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLT--CICKGV---ELDARNAID 240
Query: 235 LLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQ 294
           LL   + D+   G L E ++DSFNLP Y P+ +E+K +++   SF I   E   +     
Sbjct: 241 LLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAG 300
Query: 295 LATN-----TPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSK 332
            + +        V S +RA  E ++  HFG  II D+F RF+K
Sbjct: 301 FSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAK 343

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 178/359 (49%), Gaps = 49/359 (13%)
Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG+G  SYA+NS +    +   K ++ + I + L  N    + +K F + DLGC+ GP
Sbjct: 9   MNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRAN--LPNINKCFKVGDLGCASGP 65
Query: 71  NTFNAVQNIIDSVKLKCQSYGHDKLE---FQVFFNDLVSNDFNALYKSLPSDRQYY---- 123
           NTF+ V++I+ S+  K      ++LE    Q+F NDL  NDFN+++K LPS   +Y    
Sbjct: 66  NTFSTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPS---FYRNLE 121
Query: 124 -----------AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGR 172
                         +PGSF++RLFP+ S++F H  Y L WLS  P  L  +   + NKG 
Sbjct: 122 KENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGC 181
Query: 173 IYYSRGPNEVVE-AYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLA 231
           IY S+     ++ AY  +  K   +FL   ++EL S G M L   C  D     E     
Sbjct: 182 IYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED-----EFDHPN 236
Query: 232 SADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP----- 286
           S DLL   + D+   G L E ++DSFN+P Y P+ +E+K +++   SF I   E      
Sbjct: 237 SMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY 296
Query: 287 ---LALSAQRQLATNTPT----------VVSHLRANLEILVKEHFGNGIIEDLFDRFSK 332
               ++    Q  +++P           V S +R+  E ++  HFG  I+ DL  R +K
Sbjct: 297 DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAK 355

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	3e-90
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	6e-86
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	9e-84
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  274 bits (702), Expect = 3e-90
 Identities = 112/358 (31%), Positives = 173/358 (48%), Gaps = 27/358 (7%)

Query: 1   MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFS 60
           M  E + S  M GG GQ SYA NS  Q+    +   ++   + +   ++  +S+S   F+
Sbjct: 1   MKLERLLS--MKGGKGQDSYANNSLAQAMHARSMLHLLEETLEN---VHLNSSASPPPFT 55

Query: 61  IADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS-- 118
             DLGCS G NT + +  I+  +  +  + G D  EF  FF+DL SNDFN L++ LP   
Sbjct: 56  AVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLV 115

Query: 119 -------------DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNS 165
                        +R Y+ AGVPGSF+ RLFP  +I+FFH ++ L WLS  P+ + D+ S
Sbjct: 116 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 175

Query: 166 PAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPD-GISP 224
            AYN+GR++      +   AY  +    +  FL ARA E+  GG M L+         + 
Sbjct: 176 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 235

Query: 225 GECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF 284
              + L       D   D+ + GL++  + D FN+P Y P+ Q+ K ++  N SF+I+K 
Sbjct: 236 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 295

Query: 285 E------PLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336
                  PL ++     +       S  R+   +LV+ H G  +   LF R   +   
Sbjct: 296 VVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATS 353

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  264 bits (674), Expect = 6e-86
 Identities = 112/369 (30%), Positives = 173/369 (46%), Gaps = 43/369 (11%)

Query: 1   MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFS 60
           M  + V    M GG+G  SYA+NS +    +   K ++ + I + L  N    + +K F 
Sbjct: 1   MELQEVLH--MNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRANL--PNINKCFK 55

Query: 61  IADLGCSVGPNTFNAVQNIIDSVKLKCQSYGH--DKLEFQVFFNDLVSNDFNALYKSLPS 118
           + DLGC+ GPNTF+ V++I+ S+    Q   +  ++   Q+F NDL  NDFN+++K LPS
Sbjct: 56  VGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPS 115

Query: 119 DRQ------------YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSP 166
             +                 +PGSF++RLFP+ S++F H  Y L WLS  P  L  +   
Sbjct: 116 FYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGI 175

Query: 167 AYNKGRIYYSRG-PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPG 225
           + NKG IY S+     + +AY  +  K   +FL   ++EL S G M L   C  D     
Sbjct: 176 SVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHP 235

Query: 226 ECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE 285
                   DLL   + D+   G L E ++DSFN+P Y P+ +E+K +++   SF I   E
Sbjct: 236 NS-----MDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290

Query: 286 PLALSAQRQLATNTP------------------TVVSHLRANLEILVKEHFGNGIIEDLF 327
                     + +                     V S +R+  E ++  HFG  I+ DL 
Sbjct: 291 TFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLS 350

Query: 328 DRFSKKIDE 336
            R +K   +
Sbjct: 351 HRIAKNAAK 359

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  257 bits (658), Expect = 9e-84
 Identities = 115/350 (32%), Positives = 160/350 (45%), Gaps = 26/350 (7%)

Query: 1   MASESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFS 60
           M    V    M GG G+ SYA NS  Q   +   K I    I+          + +   +
Sbjct: 1   MDVRQVLH--MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYS----GDTVTTRLA 54

Query: 61  IADLGCSVGPNTFNAVQNIIDSVKLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLP-- 117
           IADLGCS GPN   AV  +I +V+   +  G  +  E+Q+F NDL  NDFNA+++SLP  
Sbjct: 55  IADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE 114

Query: 118 --SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
              D   +  GVPGSF+ RLFP+ +++F H SY L WLS  P  +       Y       
Sbjct: 115 NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA----- 169

Query: 176 SRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADL 235
           +  P  V+ AY  +  +    FL  RAQE+  GG M L +                   L
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSED-RASTECCLIWQL 228

Query: 236 LGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE---------P 286
           L   L  M   GL+ E ++D FN+P Y P+P E++A + +  SF I+  E          
Sbjct: 229 LAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCT 288

Query: 287 LALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336
                   +      V   +RA  E L+ +HFG  IIED+F R+   I E
Sbjct: 289 KDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIE 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 59/428 (13%), Positives = 121/428 (28%), Gaps = 138/428 (32%)

Query: 14  GDGQYSYARNSEFQSHGVETAKAII----NRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
           G+ QY Y              K I+    +  + +  D   V      + S  ++   + 
Sbjct: 12  GEHQYQY--------------KDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIM 56

Query: 70  -PNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL------PS-DRQ 121
             +  +    +  ++  K +         Q F  +++  ++  L   +      PS   +
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEE------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 122 YYAAGVPGSFHNRL------FPKASIN---------------------FFH--------- 145
            Y         +RL      F K +++                                 
Sbjct: 111 MYI-----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 146 -----C-SYGLQ--------WLS----STPKE-LNDQNSPAYNKGRIYYSRGPNEVVEAY 186
                C SY +Q        WL+    ++P+  L       Y     + SR  +      
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGE--------CSVLA-SADLLG 237
              S +     LL             L+V  L   +   +        C +L  +     
Sbjct: 226 RIHSIQAELRRLLKSKP-----YENCLLV--L-LNVQNAKAWNAFNLSCKILLTTRF--- 274

Query: 238 DCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLAT 297
             + D       +   +D  ++     TP E+K+LL +      +   P      R++ T
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT--L-TPDEVKSLLLKYLDCRPQD-LP------REVLT 324

Query: 298 NTPTVVSHLRANLEILVKEHFG--NGIIEDLFDRFSKKIDESSVYSQTS-----VYKPLV 350
             P  +S +       +++     +       D+ +  I ESS+          ++  L 
Sbjct: 325 TNPRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLS 379

Query: 351 ---ENVII 355
               +  I
Sbjct: 380 VFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.5
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.44
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.37
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.14
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.1
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.03
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.01
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.0
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.0
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.94
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.93
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.9
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.89
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.89
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.89
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.87
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.87
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.84
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.83
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.81
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.79
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.79
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.77
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.75
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.72
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.72
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.72
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.71
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.7
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.69
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.66
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.65
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.63
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.62
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.6
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.59
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.58
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.57
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.56
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.55
3ocj_A	305	Putative exported protein; structural genomics, PS	98.54
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.54
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.53
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.51
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.5
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.5
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.49
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.46
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.45
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.45
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.42
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.41
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.41
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.4
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.4
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.39
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.38
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.35
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.35
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.33
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.33
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.31
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.29
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.29
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.27
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.25
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.23
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.23
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.23
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.23
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.21
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.2
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.18
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.18
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.15
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.11
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.1
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.09
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.08
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.02
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.0
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.97
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.96
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.95
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.93
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.92
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.91
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.91
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.9
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.84
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.84
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.84
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.8
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.78
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.77
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.76
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.76
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.75
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.73
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.72
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.71
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.71
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.69
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.65
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.64
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.63
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.63
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.59
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.58
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.51
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.5
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.48
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.47
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.46
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.46
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.46
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.4
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.38
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.37
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.37
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.36
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.35
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.33
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.33
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.26
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.26
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.24
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.23
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.23
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.2
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.19
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.18
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.17
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.15
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.14
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.13
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.11
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.11
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.1
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.09
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.09
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.04
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.04
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.01
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.0
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.96
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.95
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.94
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.94
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.93
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.91
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.91
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.91
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.9
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.9
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.89
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.86
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.86
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.85
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.85
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.81
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.77
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.75
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.72
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.7
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.68
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.68
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.66
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.59
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.59
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.57
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.5
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.5
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.47
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.44
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.43
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.41
2o07_A	304	Spermidine synthase; structural genomics, structur	96.4
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.38
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.36
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.34
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.33
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.27
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.27
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.24
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.17
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.16
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.05
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.03
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.02
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.9
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.86
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.79
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.78
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.74
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.69
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.65
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.63
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	95.61
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	95.56
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.49
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.31
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.23
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	95.15
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.13
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.93
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.89
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	94.85
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	94.41
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	94.16
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	93.96
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	93.86
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	93.76
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	93.54
2qm3_A	373	Predicted methyltransferase; putative methyltransf	93.1
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	92.89
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	92.66
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	92.64
3lkd_A	542	Type I restriction-modification system methyltrans	92.43
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	91.91
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	91.73
3k6r_A	278	Putative transferase PH0793; structural genomics,	91.24
3khk_A	544	Type I restriction-modification system methylation	90.87
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.72
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	90.42
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	90.41
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	90.35
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	90.07
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	89.79
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	89.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	88.91
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	88.82
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	88.71
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	87.14
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	86.77
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	86.14
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	83.02
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	80.64
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	80.48

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=2.8e-98  Score=737.02  Aligned_cols=341  Identities=35%  Similarity=0.561  Sum_probs=310.4

Q ss_pred             CCcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHH
Q 018119            4 ESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSV   83 (360)
Q Consensus         4 ~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i   83 (360)
                      +-.+++||+||+|++||++||.+|++++..++|++++||++++. ...   .+++++|||||||+|+||+.+++.||++|
T Consensus         2 ~~~~~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~-~~~---~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i   77 (359)
T 1m6e_X            2 DVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYS-GDT---VTTRLAIADLGCSSGPNALFAVTELIKTV   77 (359)
T ss_dssp             CCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHS-SSS---SSSEECCEEESCCSSTTTTTGGGTTHHHH
T ss_pred             CcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC---CCCceEEEecCCCCCcchHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999654 221   36799999999999999999999999999


Q ss_pred             HHHhhhcCC-CCccceEEecCCCCCchHHHHhhCCC----CCcceEeecCCccccccCCCCceeEEEecccccccCCCCc
Q 018119           84 KLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLPS----DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPK  158 (360)
Q Consensus        84 ~~~~~~~~~-~~p~~~v~~nDlp~NDFn~lF~~l~~----~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~  158 (360)
                      +++|.+.+. +.|||||||||||+||||+||++||.    .++||++|||||||+||||++|+|+|||++||||||++|+
T Consensus        78 ~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~  157 (359)
T 1m6e_X           78 EELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPI  157 (359)
T ss_dssp             HHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCS
T ss_pred             HHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCch
Confidence            999987765 68899999999999999999999986    2579999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccCCceeecCC-CHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHH
Q 018119          159 ELNDQNSPAYNKGRIYYSRG-PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLG  237 (360)
Q Consensus       159 ~~~~~~~~~~nkg~I~~~~~-~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~  237 (360)
                      .+.+      |||+||++++ +|+|.+||++||++||+.||++|++||||||+||++++|+++.++.++ +.+.+|+.|.
T Consensus       158 ~l~~------nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~l~  230 (359)
T 1m6e_X          158 GIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLA  230 (359)
T ss_dssp             CCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHH
T ss_pred             hhhc------cCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCcccc-chHHHHHHHH
Confidence            9886      9999999975 667999999999999999999999999999999999999999887665 4567889999


Q ss_pred             HHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchh-hhc--------CCChhHHHHHHHH
Q 018119          238 DCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQ-RQL--------ATNTPTVVSHLRA  308 (360)
Q Consensus       238 ~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~-~~~--------~~~~~~~~~~iRA  308 (360)
                      ++|++||.+|+|++|++|+||+|+|+||++||+++|+++|+|+|+++|+++.... .++        ...|+.+++++||
T Consensus       231 ~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g~~~a~~~Ra  310 (359)
T 1m6e_X          231 MALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRA  310 (359)
T ss_dssp             HHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhHhHhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999864211 111        2357899999999


Q ss_pred             hhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119          309 NLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       309 ~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~  359 (360)
                      +.+|+|.+|||++|+|+||+||++++.++++.    ...++++++++|+||
T Consensus       311 ~~e~ll~~hfG~~i~d~lf~ry~~~~~~~~~~----~~~~~~~~~~~L~k~  357 (359)
T 1m6e_X          311 VAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK----EKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS----SCCEEEEEEEEEEBC
T ss_pred             hcchhhHHhccHHHHHHHHHHHHHHHHHHHhh----CCCceEEEEEEEEeC
Confidence            99999999999999999999999999998873    457789999999997

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=2.7e-97  Score=735.37  Aligned_cols=339  Identities=33%  Similarity=0.523  Sum_probs=291.3

Q ss_pred             CCcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCc---eeEEeeecCCCCCccHHHHHHHH
Q 018119            4 ESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSK---VFSIADLGCSVGPNTFNAVQNII   80 (360)
Q Consensus         4 ~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~---~~~IaDlGCs~G~Nt~~~~~~ii   80 (360)
                      +-.+++||+||+|++||++||. |++++..++|++++||++++. ...    ++   +++|||||||+|+||+.+++.||
T Consensus         2 ~~~~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~-~~~----~~~~~~~~IaDlGCssG~NT~~~v~~ii   75 (384)
T 2efj_A            2 ELQEVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLR-ANL----PNINKCFKVGDLGCASGPNTFSTVRDIV   75 (384)
T ss_dssp             -CTTTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHH-TTC----TTTTTEEEEEEETCCSSHHHHHHHHHHH
T ss_pred             CcccccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhh-ccc----CCcCCceEEEecCCCCCchHHHHHHHHH
Confidence            3467899999999999999999 999999999999999998653 222    44   99999999999999999999999


Q ss_pred             HHHHHHhhh--cCCCCccceEEecCCCCCchHHHHhhCCC------------CCcceEeecCCccccccCCCCceeEEEe
Q 018119           81 DSVKLKCQS--YGHDKLEFQVFFNDLVSNDFNALYKSLPS------------DRQYYAAGVPGSFHNRLFPKASINFFHC  146 (360)
Q Consensus        81 ~~i~~~~~~--~~~~~p~~~v~~nDlp~NDFn~lF~~l~~------------~~~~f~~gvpgSFy~rlfP~~S~h~~~S  146 (360)
                      ++|+++|.+  .+.+.|+|||||||||+||||+||++||.            .++||++|||||||+||||++|+|+|||
T Consensus        76 ~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~S  155 (384)
T 2efj_A           76 QSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHS  155 (384)
T ss_dssp             HHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEE
T ss_pred             HHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEe
Confidence            999999876  44567899999999999999999999984            2479999999999999999999999999


Q ss_pred             cccccccCCCCccccCCCCCCccCCceeecC-CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCC--CC
Q 018119          147 SYGLQWLSSTPKELNDQNSPAYNKGRIYYSR-GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDG--IS  223 (360)
Q Consensus       147 s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~-~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~--~~  223 (360)
                      ++||||||++|+.+.++.+++||||+||+++ +||+|.+||++||++||+.||++|++||||||+||++++|+++.  ++
T Consensus       156 s~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~  235 (384)
T 2efj_A          156 CYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHP  235 (384)
T ss_dssp             ESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCC
T ss_pred             cceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCc
Confidence            9999999999999999999999999999997 56779999999999999999999999999999999999999987  65


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchh-h---hc----
Q 018119          224 PGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQ-R---QL----  295 (360)
Q Consensus       224 ~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~-~---~~----  295 (360)
                      .++       +++.++|++||.+|+|+++++|+||+|+|+||++|++++|+++|+|+|+++|+++.... .   ++    
T Consensus       236 ~~~-------~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~  308 (384)
T 2efj_A          236 NSM-------DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQG  308 (384)
T ss_dssp             CHH-------HHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC------
T ss_pred             ccH-------HHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccc
Confidence            432       49999999999999999999999999999999999999999999999999998853211 1   11    


Q ss_pred             ----------CCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119          296 ----------ATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       296 ----------~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~  359 (360)
                                ...|+.+++++||+++|+|.+|||++|+|+||+||++++.++++.    ...++++++++|+||
T Consensus       309 ~~~~~~~~d~~~~g~~~a~~iRa~~epll~~hfG~~i~d~lF~ry~~~~~~~~~~----~~~~~~~~~~~L~k~  378 (384)
T 2efj_A          309 RSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKVLRS----GKGFYDSVIISLAKK  378 (384)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHH----TCCEEEEEEEEEEEC
T ss_pred             cccccccchHhHhHHHhhhhhHHhhhhhhHHhccHHHHHHHHHHHHHHHHHHHhh----CCCceEEEEEEEEEc
Confidence                      123578999999999999999999999999999999999999874    457799999999998

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-96  Score=729.86  Aligned_cols=349  Identities=31%  Similarity=0.516  Sum_probs=295.4

Q ss_pred             CCcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHH
Q 018119            4 ESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSV   83 (360)
Q Consensus         4 ~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i   83 (360)
                      +..+++||+||+|++||++||..|++++..++|++++||+++ .+...  ..+++++|||||||+|+||+.+++.||++|
T Consensus         2 ~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l-~~~~~--~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i   78 (374)
T 3b5i_A            2 KLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENV-HLNSS--ASPPPFTAVDLGCSSGANTVHIIDFIVKHI   78 (374)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHTS-CCCCS--SSCCCEEEEEETCCSSHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHh-hcccc--CCCCceEEEecCCCCChhHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999884 33211  026689999999999999999999999999


Q ss_pred             HHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC---------------CcceEeecCCccccccCCCCceeEEEecc
Q 018119           84 KLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD---------------RQYYAAGVPGSFHNRLFPKASINFFHCSY  148 (360)
Q Consensus        84 ~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~---------------~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~  148 (360)
                      +++|.+.+.++|++||+|||||+||||+||++|+..               ++||++|||||||+||||++|+|+|||++
T Consensus        79 ~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~  158 (374)
T 3b5i_A           79 SKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAF  158 (374)
T ss_dssp             HHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             HHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecc
Confidence            999998877889999999999999999999999963               46999999999999999999999999999


Q ss_pred             cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCc
Q 018119          149 GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECS  228 (360)
Q Consensus       149 alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~  228 (360)
                      ||||||++|+.+.++.+++||||+||+++++|+|.+||++||++||..||++|++||||||+||++++|+++.++.++.+
T Consensus       159 aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~  238 (374)
T 3b5i_A          159 SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGG  238 (374)
T ss_dssp             CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHH
T ss_pred             eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccc
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999988877666


Q ss_pred             hhhHH-HHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchh--hhc----CCChhH
Q 018119          229 VLASA-DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQ--RQL----ATNTPT  301 (360)
Q Consensus       229 ~~~~~-~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~--~~~----~~~~~~  301 (360)
                      .+.+| ++|.++|++|+.+|+|+++++|+|++|+|+||++|++++|+++|+|+|+++|+++.+..  .+.    ...|+.
T Consensus       239 ~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~  318 (374)
T 3b5i_A          239 AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRA  318 (374)
T ss_dssp             HHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHH
Confidence            77888 99999999999999999999999999999999999999999888999999999864321  111    123679


Q ss_pred             HHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCC--cEEEEEEEE
Q 018119          302 VVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKP--LVENVIILK  357 (360)
Q Consensus       302 ~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~--~~~~~~~L~  357 (360)
                      +++++||++||+|.+|||++|+|+||+||+++++++++.+  .++++  +++++|+|+
T Consensus       319 ~a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~~~~~~~~--~~~~~~~~~~~~~~l~  374 (374)
T 3b5i_A          319 FASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKDV--LVNLQFFHIVASLSFT  374 (374)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTCHHH--HTTCCCEEEEEEEEEC
T ss_pred             HHHHHHHhccchhHhhccHHHHHHHHHHHHHHHHHhHHHh--hhccccceEEEEEEeC
Confidence            9999999999999999999999999999999999999876  24556  799999885

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=4.2e-13  Score=125.52  Aligned_cols=232  Identities=16%  Similarity=0.141  Sum_probs=134.8

Q ss_pred             eccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhh
Q 018119           10 AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQS   89 (360)
Q Consensus        10 ~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~   89 (360)
                      .|........|.++...|......+       ++. +.       .....+|+|+|||+|..+..+..            
T Consensus        25 ~~~~~w~a~~y~~~~~~~~~~~~~l-------~~~-l~-------~~~~~~vLDiGcG~G~~~~~l~~------------   77 (279)
T 3ccf_A           25 TAKNFWDATLYQDKHSFVWQYGEDL-------LQL-LN-------PQPGEFILDLGCGTGQLTEKIAQ------------   77 (279)
T ss_dssp             ----------------CCSSSCCHH-------HHH-HC-------CCTTCEEEEETCTTSHHHHHHHH------------
T ss_pred             cchhhcCHHHHhhcchHHHHHHHHH-------HHH-hC-------CCCCCEEEEecCCCCHHHHHHHh------------
Confidence            4544444556777666654433322       211 21       13346999999999998877643            


Q ss_pred             cCCCCccceEEecCCCCCchHHHHh-hCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCc
Q 018119           90 YGHDKLEFQVFFNDLVSNDFNALYK-SLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAY  168 (360)
Q Consensus        90 ~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~  168 (360)
                           +..+|+-.|+.. +.-...+ .++  +--|..+.   +..-.+ ++++|+|+|+.++||+..             
T Consensus        78 -----~~~~v~gvD~s~-~~~~~a~~~~~--~~~~~~~d---~~~~~~-~~~fD~v~~~~~l~~~~d-------------  132 (279)
T 3ccf_A           78 -----SGAEVLGTDNAA-TMIEKARQNYP--HLHFDVAD---ARNFRV-DKPLDAVFSNAMLHWVKE-------------  132 (279)
T ss_dssp             -----TTCEEEEEESCH-HHHHHHHHHCT--TSCEEECC---TTTCCC-SSCEEEEEEESCGGGCSC-------------
T ss_pred             -----CCCeEEEEECCH-HHHHHHHhhCC--CCEEEECC---hhhCCc-CCCcCEEEEcchhhhCcC-------------
Confidence                 124566666532 1111111 111  11233332   222223 579999999999999643             


Q ss_pred             cCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q 018119          169 NKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL  248 (360)
Q Consensus       169 nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~  248 (360)
                                               ...+|+.-++-|+|||++++.+.+.++.        ....+.+...+.   ..|.
T Consensus       133 -------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~---~~~~  176 (279)
T 3ccf_A          133 -------------------------PEAAIASIHQALKSGGRFVAEFGGKGNI--------KYILEALYNALE---TLGI  176 (279)
T ss_dssp             -------------------------HHHHHHHHHHHEEEEEEEEEEEECTTTT--------HHHHHHHHHHHH---HHTC
T ss_pred             -------------------------HHHHHHHHHHhcCCCcEEEEEecCCcch--------HHHHHHHHHHHH---hcCC
Confidence                                     3346777788999999999998765432        112233333333   2233


Q ss_pred             CCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHH
Q 018119          249 LSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFD  328 (360)
Q Consensus       249 i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~  328 (360)
                      -    ...+..|+++++.+++.+++++.| |++..++.+..+..+  +.+.+.+..|++++..+++. .++++..+++.+
T Consensus       177 ~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~  248 (279)
T 3ccf_A          177 H----NPQALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL--AEGEFGMANWIQMFASAFLV-GLTPDQQVQLIR  248 (279)
T ss_dssp             C----CGGGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC--SSGGGHHHHHHHHHCHHHHT-TCCHHHHHHHHH
T ss_pred             c----cccCcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc--cCCHHHHHHHHHHhhHHHhc-cCCHHHHHHHHH
Confidence            1    234556788999999999999996 999988877543333  11356788899888777665 577778888888


Q ss_pred             HHHHHHHhc
Q 018119          329 RFSKKIDES  337 (360)
Q Consensus       329 r~~~~~~~~  337 (360)
                      ++.+.+.+.
T Consensus       249 ~~~~~~~~~  257 (279)
T 3ccf_A          249 KVEATLQDK  257 (279)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            888877764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=2.8e-12  Score=117.62  Aligned_cols=229  Identities=13%  Similarity=0.179  Sum_probs=137.1

Q ss_pred             CchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCcc
Q 018119           17 QYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLE   96 (360)
Q Consensus        17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~   96 (360)
                      ...|.+.+..|......       .+.. +.       .....+|+|+|||+|..+..+....               |.
T Consensus         8 ~~~y~~~~~~~~~~~~~-------l~~~-~~-------~~~~~~vLdiG~G~G~~~~~l~~~~---------------~~   57 (259)
T 2p35_A            8 AQQYLKFEDERTRPARD-------LLAQ-VP-------LERVLNGYDLGCGPGNSTELLTDRY---------------GV   57 (259)
T ss_dssp             CGGGBCCCCGGGHHHHH-------HHTT-CC-------CSCCSSEEEETCTTTHHHHHHHHHH---------------CT
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHh-cC-------CCCCCEEEEecCcCCHHHHHHHHhC---------------CC
Confidence            35788888877765542       2222 21       1335799999999999988765431               22


Q ss_pred             ceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec
Q 018119           97 FQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS  176 (360)
Q Consensus        97 ~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~  176 (360)
                      .+|+-.|+...-....-+..+  +--|..+   .+..-. |++++|+|+|+.++||+..                     
T Consensus        58 ~~v~~~D~s~~~~~~a~~~~~--~~~~~~~---d~~~~~-~~~~fD~v~~~~~l~~~~~---------------------  110 (259)
T 2p35_A           58 NVITGIDSDDDMLEKAADRLP--NTNFGKA---DLATWK-PAQKADLLYANAVFQWVPD---------------------  110 (259)
T ss_dssp             TSEEEEESCHHHHHHHHHHST--TSEEEEC---CTTTCC-CSSCEEEEEEESCGGGSTT---------------------
T ss_pred             CEEEEEECCHHHHHHHHHhCC--CcEEEEC---ChhhcC-ccCCcCEEEEeCchhhCCC---------------------
Confidence            456666654321111111111  1123333   233333 7889999999999999632                     


Q ss_pred             CCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcc
Q 018119          177 RGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDS  256 (360)
Q Consensus       177 ~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~  256 (360)
                                       ...+|+.-.+-|+|||++++..++....             .....+.++...+.... ....
T Consensus       111 -----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~  159 (259)
T 2p35_A          111 -----------------HLAVLSQLMDQLESGGVLAVQMPDNLQE-------------PTHIAMHETADGGPWKD-AFSG  159 (259)
T ss_dssp             -----------------HHHHHHHHGGGEEEEEEEEEEEECCTTS-------------HHHHHHHHHHHHSTTGG-GC--
T ss_pred             -----------------HHHHHHHHHHhcCCCeEEEEEeCCCCCc-------------HHHHHHHHHhcCcchHH-Hhcc
Confidence                             3456777788999999999998654321             11122333333221111 1111


Q ss_pred             c-CCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhh-HHHHhhhchhHHHHHHHHHHHHH
Q 018119          257 F-NLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLE-ILVKEHFGNGIIEDLFDRFSKKI  334 (360)
Q Consensus       257 f-~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e-~~l~~hfg~~i~delf~r~~~~~  334 (360)
                      . ..+..+++.+++.+++++.| |+|+..+.... ..+   .+...+..|+++... +++ ..++++..+++.+++.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~-~~~---~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  233 (259)
T 2p35_A          160 GGLRRKPLPPPSDYFNALSPKS-SRVDVWHTVYN-HPM---KDADSIVEWVKGTGLRPYL-AAAGEENREAFLADYTRRI  233 (259)
T ss_dssp             -----CCCCCHHHHHHHHGGGE-EEEEEEEEEEE-EEE---SCHHHHHHHHTTTTTTHHH-HTTCGGGHHHHHHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHHHhcC-CceEEEEEEee-ecc---CCchHHhhhhhcCcchHHH-HhCCHHHHHHHHHHHHHHH
Confidence            1 23566789999999999995 98766553311 112   246778889987643 444 4688888888888888888


Q ss_pred             Hhcch
Q 018119          335 DESSV  339 (360)
Q Consensus       335 ~~~~~  339 (360)
                      ++...
T Consensus       234 ~~~~~  238 (259)
T 2p35_A          234 AAAYP  238 (259)
T ss_dssp             HHHSC
T ss_pred             HHhCC
Confidence            86543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.37  E-value=7.6e-12  Score=114.79  Aligned_cols=222  Identities=9%  Similarity=0.038  Sum_probs=131.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--CCcceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--DRQYYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~  133 (360)
                      ....+|+|+|||+|..+..+...                 ..+|+-.|....-....-+.+..  .+--|..   +.+..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~   97 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-----------------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQ---ADARA   97 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-----------------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEE---SCTTS
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-----------------CCEEEEEECCHHHHHHHHHHhhccCCceEEEE---ccccc
Confidence            34579999999999999877531                 13455555432111111111110  1111222   23444


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.+|++++|+|+++.++||+..                                      ...+|+.-.+-|+|||++++
T Consensus        98 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~  139 (263)
T 2yqz_A           98 IPLPDESVHGVIVVHLWHLVPD--------------------------------------WPKVLAEAIRVLKPGGALLE  139 (263)
T ss_dssp             CCSCTTCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeeEEEECCchhhcCC--------------------------------------HHHHHHHHHHHCCCCcEEEE
Confidence            4478899999999999999643                                      33467777788999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchh
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAK-MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQ  292 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~  292 (360)
                      .+...+..         .. ..+...|.++.. .|.-       ..-+.++++.+++.++++..| |++...+.......
T Consensus       140 ~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~  201 (263)
T 2yqz_A          140 GWDQAEAS---------PE-WTLQERWRAFAAEEGFP-------VERGLHAKRLKEVEEALRRLG-LKPRTREVARWREE  201 (263)
T ss_dssp             EEEEECCC---------HH-HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHTT-CCCEEEEEEEEEEE
T ss_pred             EecCCCcc---------HH-HHHHHHHHHHHHHhCCC-------cccccccCCHHHHHHHHHHcC-CCcceEEEeeeecC
Confidence            84433111         10 112223333222 1311       112456778999999999996 99877665432211


Q ss_pred             hhcCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119          293 RQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       293 ~~~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~  359 (360)
                          .+.+.+..++++.+.+.+ .+++++..+++.+++.+.+.+..... +....-+..++++.-||
T Consensus       202 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~rk  262 (263)
T 2yqz_A          202 ----RTPREALEALSERLYSFT-QGLPEPVHARVMERLWAWAEAELGDL-DRPFPVEKRFLLRVSRL  262 (263)
T ss_dssp             ----ECHHHHHHHHHTTCSGGG-SSSCHHHHHHHHHHHHHHHHHHSSCT-TSCEEEEEEEEEEEEEC
T ss_pred             ----CCHHHHHHHHHHhhcccc-cCCCHHHHHHHHHHHHHHHHHhcCCc-CccccccceeEEEeeec
Confidence                245667777776655544 46788888888888888888764321 11123345566666665

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.14  E-value=8.8e-09  Score=95.13  Aligned_cols=191  Identities=12%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCC-CCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPS-DRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~-~~~~f~~gvpgSF  131 (360)
                      ...+|+|+|||+|..+..+....                ..+|+--|+... .-...+    .... .+--|.   .+++
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~---~~d~  120 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR----------------DVRVTGISISRP-QVNQANARATAAGLANRVTFS---YADA  120 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS----------------CCEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEE---ECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc----------------CCEEEEEeCCHH-HHHHHHHHHHhcCCCcceEEE---ECcc
Confidence            35799999999999988776421                123444443211 111111    0000 011122   2334


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--+|++++|+|+|+.++||+..                                      ...+|+.-++-|+|||++
T Consensus       121 ~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l  162 (273)
T 3bus_A          121 MDLPFEDASFDAVWALESLHHMPD--------------------------------------RGRALREMARVLRPGGTV  162 (273)
T ss_dssp             TSCCSCTTCEEEEEEESCTTTSSC--------------------------------------HHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCCCCCccEEEEechhhhCCC--------------------------------------HHHHHHHHHHHcCCCeEE
Confidence            444478899999999999999643                                      234677778999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccch
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSA  291 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~  291 (360)
                      ++......+...          ......+..+..          .+ -..+.++.+++.+++++.| |++..++.+....
T Consensus       163 ~i~~~~~~~~~~----------~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~  220 (273)
T 3bus_A          163 AIADFVLLAPVE----------GAKKEAVDAFRA----------GG-GVLSLGGIDEYESDVRQAE-LVVTSTVDISAQA  220 (273)
T ss_dssp             EEEEEEESSCCC----------HHHHHHHHHHHH----------HH-TCCCCCCHHHHHHHHHHTT-CEEEEEEECHHHH
T ss_pred             EEEEeeccCCCC----------hhHHHHHHHHHh----------hc-CccCCCCHHHHHHHHHHcC-CeEEEEEECcHhH
Confidence            998776543211          111111221110          01 1234789999999999995 9998888763221


Q ss_pred             hhhcCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHH
Q 018119          292 QRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSK  332 (360)
Q Consensus       292 ~~~~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~  332 (360)
                      +.    .-..+...+++.... +...+|++..+.+.+.+..
T Consensus       221 ~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  256 (273)
T 3bus_A          221 RP----SLVKTAEAFENARSQ-VEPFMGAEGLDRMIATFRG  256 (273)
T ss_dssp             TT----HHHHHHHHHHHTHHH-HHHHHCHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHhHHH-HHhhcCHHHHHHHHHHHHH
Confidence            10    112233333333333 3356788777777766665

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.10  E-value=2.9e-09  Score=96.14  Aligned_cols=168  Identities=10%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ....+|+|+|||+|..+..+....               |..+|+--|+...-....-+.++...+  +.-+.+.+..-.
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~  105 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKY---------------PEATFTLVDMSEKMLEIAKNRFRGNLK--VKYIEADYSKYD  105 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEESCHHHHHHHHHHTCSCTT--EEEEESCTTTCC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHhhccCCC--EEEEeCchhccC
Confidence            446899999999998887764421               346677777743222222222322222  122233455555


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ++ +++|+|+++.++||++.                                    .+...+|+.-++-|+|||++++..
T Consensus       106 ~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          106 FE-EKYDMVVSALSIHHLED------------------------------------EDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             CC-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-CCceEEEEeCccccCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            56 89999999999999633                                    123457777788999999999987


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC---CCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN---LPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~---~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ...++.        ..........|.....++..+.+++..+.   --.+.++.+|+.+++++.| |++..+..
T Consensus       149 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~  213 (234)
T 3dtn_A          149 LVHGET--------AFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIY  213 (234)
T ss_dssp             ECBCSS--------HHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEE
T ss_pred             ecCCCC--------hhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeee
Confidence            665533        12234556667766666666776654321   2334578999999999995 98876653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.03  E-value=8.8e-09  Score=94.19  Aligned_cols=192  Identities=14%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC-CCcceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS-DRQYYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~-~~~~f~~gvpgSFy~  133 (360)
                      ....+|+|+|||+|..+..+....                ..+|+--|+.. +.-...+.. .. .+--|..+   .+..
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~---d~~~  113 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY----------------GAHTHGIDICS-NIVNMANERVSGNNKIIFEAN---DILT  113 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHHTCCSCTTEEEEEC---CTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc----------------CCEEEEEeCCH-HHHHHHHHHhhcCCCeEEEEC---cccc
Confidence            345799999999999888775532                03445555432 111222221 11 11112222   3444


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --+|++++|+|+|+.++||++.                                    .|...+|+.-.+-|+|||++++
T Consensus       114 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~  157 (266)
T 3ujc_A          114 KEFPENNFDLIYSRDAILALSL------------------------------------ENKNKLFQKCYKWLKPTGTLLI  157 (266)
T ss_dssp             CCCCTTCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCcEEEEeHHHHHHhcCh------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence            4578899999999999999632                                    2466788888899999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhh
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR  293 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~  293 (360)
                      .....+......        ..+...+.   ..|             ..+++.+++.++++..| |++...+.+...  +
T Consensus       158 ~~~~~~~~~~~~--------~~~~~~~~---~~~-------------~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~--~  210 (266)
T 3ujc_A          158 TDYCATEKENWD--------DEFKEYVK---QRK-------------YTLITVEEYADILTACN-FKNVVSKDLSDY--W  210 (266)
T ss_dssp             EEEEESCGGGCC--------HHHHHHHH---HHT-------------CCCCCHHHHHHHHHHTT-CEEEEEEECHHH--H
T ss_pred             EEeccCCcccch--------HHHHHHHh---cCC-------------CCCCCHHHHHHHHHHcC-CeEEEEEeCCHH--H
Confidence            987655421110        22222221   112             23679999999999995 999888766321  1


Q ss_pred             hcCCChhHHHHHHHHhhh--HHHHhhhchhHHHHHHHHHHHHHH
Q 018119          294 QLATNTPTVVSHLRANLE--ILVKEHFGNGIIEDLFDRFSKKID  335 (360)
Q Consensus       294 ~~~~~~~~~~~~iRA~~e--~~l~~hfg~~i~delf~r~~~~~~  335 (360)
                           ...+..|.+.+..  .-+.+.++++..+.+.+.....+.
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (266)
T 3ujc_A          211 -----NQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIK  249 (266)
T ss_dssp             -----HHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                 1223333333321  112234566666666555555554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.01  E-value=1.2e-08  Score=96.13  Aligned_cols=167  Identities=13%  Similarity=0.193  Sum_probs=92.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHH---HHhhCCCC-CcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA---LYKSLPSD-RQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~---lF~~l~~~-~~~f~~gvpgSFy  132 (360)
                      ...+|+|+|||+|..++.+....               + .+|+--|+...=...   .++...-. +--|..+.   +.
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~---------------~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~  132 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEY---------------D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WE  132 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC---GG
T ss_pred             CcCEEEEeeccCcHHHHHHHHhC---------------C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC---HH
Confidence            35799999999999988876531               1 233444432110000   01110100 11122222   21


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                       .+  ++++|+|+|+.++|++.... ...         |                   .+++..+|+.-.+-|+|||+++
T Consensus       133 -~~--~~~fD~v~~~~~~~~~~d~~-~~~---------~-------------------~~~~~~~l~~~~~~LkpgG~l~  180 (302)
T 3hem_A          133 -EF--DEPVDRIVSLGAFEHFADGA-GDA---------G-------------------FERYDTFFKKFYNLTPDDGRML  180 (302)
T ss_dssp             -GC--CCCCSEEEEESCGGGTTCCS-SCC---------C-------------------TTHHHHHHHHHHHSSCTTCEEE
T ss_pred             -Hc--CCCccEEEEcchHHhcCccc-ccc---------c-------------------hhHHHHHHHHHHHhcCCCcEEE
Confidence             12  57999999999999975521 100         0                   1357778999999999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +......+.....  ..+..+..-..-+.+..          ..+.+|. +.|+.+++.+.++..| |++..++.+
T Consensus       181 i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~p~~~~~s~~~~~~~l~~aG-f~~~~~~~~  243 (302)
T 3hem_A          181 LHTITIPDKEEAQ--ELGLTSPMSLLRFIKFI----------LTEIFPGGRLPRISQVDYYSSNAG-WKVERYHRI  243 (302)
T ss_dssp             EEEEECCCHHHHH--HHTCCCCHHHHHHHHHH----------HHHTCTTCCCCCHHHHHHHHHHHT-CEEEEEEEC
T ss_pred             EEEEeccCccchh--hccccccccccchHHHH----------HHhcCCCCCCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence            9987665321000  00000000000011111          1223343 6799999999999985 999998876

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.00  E-value=1e-07  Score=88.74  Aligned_cols=100  Identities=12%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+|+|..++|++..                                    .|...+|+.-.+-|+|||++++.....
T Consensus       128 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             CCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             CCeeEEEEeCchhhcCh------------------------------------HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            78999999999999643                                    135567888889999999999998765


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .+.......+....+.  ...+.+.....          ..| ...|+.+++.+++++.| |++...+.+
T Consensus       172 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~  228 (287)
T 1kpg_A          172 LHPKEIHERGLPMSFT--FARFLKFIVTE----------IFPGGRLPSIPMVQECASANG-FTVTRVQSL  228 (287)
T ss_dssp             CCHHHHTTTTCSCHHH--HHHHHHHHHHH----------TSTTCCCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred             CCcccccccccccccc--ccchhhhHHhe----------eCCCCCCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence            4321000000000000  00111111111          112 24579999999999985 999888765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.00  E-value=2.6e-08  Score=91.02  Aligned_cols=188  Identities=19%  Similarity=0.222  Sum_probs=105.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCC-CCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPS-DRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~-~~~~f~~gvpgSF  131 (360)
                      ...+|+|+|||+|..+..+....               + -+|+--|+... .-...+    ...- .+--|..+   ++
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~---------------~-~~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~~~---d~  105 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYV---------------K-GQITGIDLFPD-FIEIFNENAVKANCADRVKGITG---SM  105 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHC---------------C-SEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEEC---CT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhC---------------C-CeEEEEECCHH-HHHHHHHHHHHcCCCCceEEEEC---Ch
Confidence            34699999999999888775421               1 14444444211 111111    1110 01112222   23


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--+|++++|+|+|+.++||+ .                                      ...+|+.-.+-|+|||++
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~-~--------------------------------------~~~~l~~~~~~L~pgG~l  146 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNI-G--------------------------------------FERGMNEWSKYLKKGGFI  146 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCC-C--------------------------------------HHHHHHHHHTTEEEEEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhc-C--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence            3334678999999999999996 2                                      123566667889999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccch
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSA  291 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~  291 (360)
                      ++..+........         ..+...|....               |- .++.+++.+++++.| |++.....+....
T Consensus       147 ~~~~~~~~~~~~~---------~~~~~~~~~~~---------------~~-~~~~~~~~~~l~~aG-f~~v~~~~~~~~~  200 (257)
T 3f4k_A          147 AVSEASWFTSERP---------AEIEDFWMDAY---------------PE-ISVIPTCIDKMERAG-YTPTAHFILPENC  200 (257)
T ss_dssp             EEEEEEESSSCCC---------HHHHHHHHHHC---------------TT-CCBHHHHHHHHHHTT-EEEEEEEECCGGG
T ss_pred             EEEEeeccCCCCh---------HHHHHHHHHhC---------------CC-CCCHHHHHHHHHHCC-CeEEEEEECChhh
Confidence            9997653322110         22333343210               11 578999999999995 9998877664333


Q ss_pred             hhhcCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHH
Q 018119          292 QRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKID  335 (360)
Q Consensus       292 ~~~~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~  335 (360)
                      |...      +...++...+.+...+-++...+++.++..+...
T Consensus       201 w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (257)
T 3f4k_A          201 WTEH------YFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERS  238 (257)
T ss_dssp             TCCC------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHH------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3211      1112233333334444455556666555555444

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.94  E-value=4.4e-08  Score=90.02  Aligned_cols=151  Identities=14%  Similarity=0.178  Sum_probs=89.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSFy  132 (360)
                      ...+|+|+|||+|..+..+...               .  -+|+-.|+.. +.-...+..    ...+--|..   +.+.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~---------------~--~~v~gvD~s~-~~l~~a~~~~~~~~~~~v~~~~---~d~~   95 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPF---------------V--KKVVAFDLTE-DILKVARAFIEGNGHQQVEYVQ---GDAE   95 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGG---------------S--SEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEE---CCC-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh---------------C--CEEEEEeCCH-HHHHHHHHHHHhcCCCceEEEE---ecHH
Confidence            4579999999999988766421               0  1445555421 111111110    001111222   2344


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--||++++|+|+|+.++||+..                                      ...+|+.-.+-|+|||+++
T Consensus        96 ~l~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A           96 QMPFTDERFHIVTCRIAAHHFPN--------------------------------------PASFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             CCCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             hCCCCCCCEEEEEEhhhhHhcCC--------------------------------------HHHHHHHHHHHcCCCCEEE
Confidence            44578899999999999999643                                      2346777778999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      +.....++.         ..+..+...+..+..            .......+.+++.+++++.| |++..++.+.
T Consensus       138 ~~~~~~~~~---------~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  191 (260)
T 1vl5_A          138 LVDNSAPEN---------DAFDVFYNYVEKERD------------YSHHRAWKKSDWLKMLEEAG-FELEELHCFH  191 (260)
T ss_dssp             EEEEEBCSS---------HHHHHHHHHHHHHHC------------TTCCCCCBHHHHHHHHHHHT-CEEEEEEEEE
T ss_pred             EEEcCCCCC---------HHHHHHHHHHHHhcC------------ccccCCCCHHHHHHHHHHCC-CeEEEEEEee
Confidence            986544322         111222222221111            01123568999999999985 9998887663

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.93  E-value=8.1e-08  Score=88.69  Aligned_cols=152  Identities=20%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCC-CCcceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPS-DRQYYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~-~~~~f~~gvpgS  130 (360)
                      +...+|+|+|||+|..++.+...                +..+|+--|+... .-...+    ...- .+--|..+   .
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~---d  104 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH----------------VTGQVTGLDFLSG-FIDIFNRNARQSGLQNRVTGIVG---S  104 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT----------------CSSEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEEC---C
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc----------------cCCEEEEEeCCHH-HHHHHHHHHHHcCCCcCcEEEEc---C
Confidence            34679999999999988776431                2245555555321 111111    1110 11112222   2


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +..-.+|++++|+|+|+.++|++ .                                      ...+|+.-.+-|+|||+
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~--------------------------------------~~~~l~~~~~~LkpgG~  145 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-G--------------------------------------FERGLNEWRKYLKKGGY  145 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-C--------------------------------------HHHHHHHHGGGEEEEEE
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-C--------------------------------------HHHHHHHHHHHcCCCCE
Confidence            33334678999999999999996 2                                      22366777789999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccc
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALS  290 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~  290 (360)
                      +++..+........         ..+...|.+    .           .| .+++.+++.+++++.| |++...+.+...
T Consensus       146 l~~~~~~~~~~~~~---------~~~~~~~~~----~-----------~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~~~  199 (267)
T 3kkz_A          146 LAVSECSWFTDERP---------AEINDFWMD----A-----------YP-EIDTIPNQVAKIHKAG-YLPVATFILPEN  199 (267)
T ss_dssp             EEEEEEEESSSCCC---------HHHHHHHHH----H-----------CT-TCEEHHHHHHHHHHTT-EEEEEEEECCGG
T ss_pred             EEEEEeeecCCCCh---------HHHHHHHHH----h-----------CC-CCCCHHHHHHHHHHCC-CEEEEEEECCHh
Confidence            99987653322110         223333431    0           12 3679999999999996 999888777433


Q ss_pred             hh
Q 018119          291 AQ  292 (360)
Q Consensus       291 ~~  292 (360)
                      .|
T Consensus       200 ~w  201 (267)
T 3kkz_A          200 CW  201 (267)
T ss_dssp             GT
T ss_pred             HH
Confidence            33

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.90  E-value=9.8e-09  Score=91.65  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+...                 ..+++--|....-....-+.++ .+--|..   +.+..-.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~---~d~~~~~~  103 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA-----------------GRTVYGIEPSREMRMIAKEKLP-KEFSITE---GDFLSFEV  103 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT-----------------TCEEEEECSCHHHHHHHHHHSC-TTCCEES---CCSSSCCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC-----------------CCeEEEEeCCHHHHHHHHHhCC-CceEEEe---CChhhcCC
Confidence            3569999999999888776442                 1456666664321111111222 1112332   33555456


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      | +++|+|+++.++||+...                                    +...+|+.-++-|+|||++++..+
T Consensus       104 ~-~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          104 P-TSIDTIVSTYAFHHLTDD------------------------------------EKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             C-SCCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             C-CCeEEEEECcchhcCChH------------------------------------HHHHHHHHHHHhcCCCCEEEEEec
Confidence            6 899999999999996431                                    123477777899999999999975


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ...+.            ......+..+...|....   ..-..+.++++.+++++++++.| |+|...+..
T Consensus       147 ~~~~~------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~  201 (220)
T 3hnr_A          147 IFADQ------------DAYDKTVEAAKQRGFHQL---ANDLQTEYYTRIPVMQTIFENNG-FHVTFTRLN  201 (220)
T ss_dssp             CBSSH------------HHHHHHHHHHHHTTCHHH---HHHHHHSCCCBHHHHHHHHHHTT-EEEEEEECS
T ss_pred             cccCh------------HHHHHHHHHHHhCCCccc---hhhcchhhcCCHHHHHHHHHHCC-CEEEEeecc
Confidence            54432            233333444445554311   11123456789999999999995 999887754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.89  E-value=8.3e-08  Score=87.40  Aligned_cols=152  Identities=14%  Similarity=0.221  Sum_probs=89.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|..+..+....                 -+|+-.|+.. +.-...+. +   ...+--|..+   .+
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~-----------------~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~---d~   78 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV-----------------QECIGVDATK-EMVEVASSFAQEKGVENVRFQQG---TA   78 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-----------------SEEEEEESCH-HHHHHHHHHHHHHTCCSEEEEEC---BT
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC-----------------CEEEEEECCH-HHHHHHHHHHHHcCCCCeEEEec---cc
Confidence            345799999999999887664310                 1344444421 11111111 0   0001112222   23


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--+|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++
T Consensus        79 ~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           79 ESLPFPDDSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRF  120 (239)
T ss_dssp             TBCCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             ccCCCCCCcEEEEEECCchhhccC--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence            344477899999999999999643                                      334677777899999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ++.....++.         ...+.+...+..+. .+           ......+.+++.+++++.| |++..++.+.
T Consensus       121 ~~~~~~~~~~---------~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~  175 (239)
T 1xxl_A          121 LLVDHYAPED---------PVLDEFVNHLNRLR-DP-----------SHVRESSLSEWQAMFSANQ-LAYQDIQKWN  175 (239)
T ss_dssp             EEEEECBCSS---------HHHHHHHHHHHHHH-CT-----------TCCCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEEcCCCCC---------hhHHHHHHHHHHhc-cc-----------cccCCCCHHHHHHHHHHCC-CcEEEEEeec
Confidence            9986544322         11122222222111 11           1123468999999999996 9988887663

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.89  E-value=1.5e-08  Score=95.27  Aligned_cols=156  Identities=14%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccc--eEEecCCCCCchHHHHhhC----CCCCcc-eEeecC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEF--QVFFNDLVSNDFNALYKSL----PSDRQY-YAAGVP  128 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~--~v~~nDlp~NDFn~lF~~l----~~~~~~-f~~gvp  128 (360)
                      ....+|+|+|||+|..|+.++..+..    ++       |..  .+...|... +.=...+..    +...++ |... .
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~----~~-------~~~~v~~~~vD~S~-~ml~~a~~~~~~~~~~~~v~~~~~-~  117 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQA----QY-------PGVCINNEVVEPSA-EQIAKYKELVAKTSNLENVKFAWH-K  117 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHH----HS-------TTCEEEEEEECSCH-HHHHHHHHHHHTCSSCTTEEEEEE-C
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHh----hC-------CCceeeEEEEeCCH-HHHHHHHHHHHhccCCCcceEEEE-e
Confidence            34689999999999877666554432    11       223  336666532 222222211    111111 1111 1


Q ss_pred             Ccccc------ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          129 GSFHN------RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       129 gSFy~------rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                      +..-.      +-||++++|+|+++.+|||+..                                      ...+|+.-+
T Consensus       118 ~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~  159 (292)
T 2aot_A          118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--------------------------------------IPATLKFFH  159 (292)
T ss_dssp             SCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHH
T ss_pred             cchhhhhhhhccccCCCceeEEEEeeeeeecCC--------------------------------------HHHHHHHHH
Confidence            12211      1267899999999999999544                                      444677777


Q ss_pred             HHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119          203 QELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       203 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      +-|+|||++++.....+.           .|.   ..|..... . +..      .-...+++.+++..++++.| |++.
T Consensus       160 r~LkpgG~l~i~~~~~~~-----------~~~---~~~~~~~~-~-~~~------~~~~~~~~~~~~~~~l~~aG-f~~~  216 (292)
T 2aot_A          160 SLLGTNAKMLIIVVSGSS-----------GWD---KLWKKYGS-R-FPQ------DDLCQYITSDDLTQMLDNLG-LKYE  216 (292)
T ss_dssp             HTEEEEEEEEEEEECTTS-----------HHH---HHHHHHGG-G-SCC------CTTCCCCCHHHHHHHHHHHT-CCEE
T ss_pred             HHcCCCcEEEEEEecCCc-----------cHH---HHHHHHHH-h-ccC------CCcccCCCHHHHHHHHHHCC-CceE
Confidence            899999999998754321           111   11222211 1 000      01235688999999999995 9887


Q ss_pred             EEE
Q 018119          283 KFE  285 (360)
Q Consensus       283 ~~e  285 (360)
                      ..+
T Consensus       217 ~~~  219 (292)
T 2aot_A          217 CYD  219 (292)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.89  E-value=9.9e-09  Score=90.62  Aligned_cols=143  Identities=14%  Similarity=0.032  Sum_probs=94.6

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      ..+|+|+|||+|..+..+...                 ..+|+--|+.. +.-...+...+ +--|..   +.+..--+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-~~~~~a~~~~~-~~~~~~---~d~~~~~~~   99 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-----------------GHQIEGLEPAT-RLVELARQTHP-SVTFHH---GTITDLSDS   99 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-----------------TCCEEEECCCH-HHHHHHHHHCT-TSEEEC---CCGGGGGGS
T ss_pred             CCeEEEecCCCCHHHHHHHhc-----------------CCeEEEEeCCH-HHHHHHHHhCC-CCeEEe---CcccccccC
Confidence            568999999999988766432                 02445555531 11111111110 111222   334444577


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|+|+++.++||+..                                    .|...+|+.-++-|+|||++++....
T Consensus       100 ~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A          100 PKRWAGLLAWYSLIHMGP------------------------------------GELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             CCCEEEEEEESSSTTCCT------------------------------------TTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEehhhHhcCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            899999999999999642                                    13566788888999999999999865


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      .....                              .++....+.++.+.+|+.+++++.| |++..++.+..
T Consensus       144 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~  184 (203)
T 3h2b_A          144 GPSLE------------------------------PMYHPVATAYRWPLPELAQALETAG-FQVTSSHWDPR  184 (203)
T ss_dssp             CSSCE------------------------------EECCSSSCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred             CCchh------------------------------hhhchhhhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence            54311                              1112233667889999999999995 99999987753

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.87  E-value=4.8e-07  Score=84.62  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCC-CCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPS-DRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~-~~~~f~~gvpgSF  131 (360)
                      ...+|+|+|||+|..+..+....                ..+|+--|+.. ..-...+.    ... .+--|.   .+.+
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~---~~d~  141 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF----------------GVSIDCLNIAP-VQNKRNEEYNNQAGLADNITVK---YGSF  141 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHHHHHHHTCTTTEEEE---ECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh----------------CCEEEEEeCCH-HHHHHHHHHHHhcCCCcceEEE---EcCc
Confidence            45799999999999888765431                03455555532 11111111    000 111122   2345


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..-.+|++++|+|++..++||+..                                      ...+|+.-++-|+|||++
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l  183 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGVM  183 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             ccCCCCCCCEeEEEecchhhhcCC--------------------------------------HHHHHHHHHHHcCCCeEE
Confidence            555578899999999999999643                                      234677778899999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++..+...+....         ..+...+..+              ..| ..++.+++.+++++.| |++..++.+
T Consensus       184 ~~~~~~~~~~~~~---------~~~~~~~~~~--------------~~~-~~~~~~~~~~~l~~aG-f~~~~~~~~  234 (297)
T 2o57_A          184 AITDPMKEDGIDK---------SSIQPILDRI--------------KLH-DMGSLGLYRSLAKECG-LVTLRTFSR  234 (297)
T ss_dssp             EEEEEEECTTCCG---------GGGHHHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEEeccCCCCch---------HHHHHHHHHh--------------cCC-CCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence            9998765543211         0111111111              112 2568999999999995 999888765

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.87  E-value=4.5e-08  Score=91.52  Aligned_cols=160  Identities=19%  Similarity=0.234  Sum_probs=85.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCc-ceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQ-YYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~-~f~~gvpgSF  131 (360)
                      ..-+|+|+|||+|..|+.+...+             ..|..+|+--|+.. +.=...+.    .....+ -|..|   .+
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~-------------~~~~~~v~gvD~s~-~ml~~A~~~~~~~~~~~~v~~~~~---D~  132 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-AMIERCRRHIDAYKAPTPVDVIEG---DI  132 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTC-------------CSSSCEEEEEESCH-HHHHHHHHHHHTSCCSSCEEEEES---CT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc-------------CCCCCEEEEEECCH-HHHHHHHHHHHhhccCceEEEeec---cc
Confidence            34699999999999888775421             01223444444321 11111111    110111 12222   12


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      .+  +|-.++|+++|+++|||+..                                    .|...+|+.-++-|+|||+|
T Consensus       133 ~~--~~~~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpGG~l  174 (261)
T 4gek_A          133 RD--IAIENASMVVLNFTLQFLEP------------------------------------SERQALLDKIYQGLNPGGAL  174 (261)
T ss_dssp             TT--CCCCSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             cc--ccccccccceeeeeeeecCc------------------------------------hhHhHHHHHHHHHcCCCcEE
Confidence            22  34457999999999999632                                    13455788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhh----cccCCCcccCCHHHHHHHHHhCCceeE
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAK-MGLLSEAQV----DSFNLPSYFPTPQELKALLKRNASFSI  281 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~eE~~~~ie~~g~F~I  281 (360)
                      ++.-..+...        ...-+.+...+.++.. .|. ++.++    ....-.....|.+|+.+.+++.| |+-
T Consensus       175 ii~e~~~~~~--------~~~~~~~~~~~~~~~~~~g~-s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AG-F~~  239 (261)
T 4gek_A          175 VLSEKFSFED--------AKVGELLFNMHHDFKRANGY-SELEISQKRSMLENVMLTDSVETHKARLHKAG-FEH  239 (261)
T ss_dssp             EEEEEBCCSS--------HHHHHHHHHHHHHHHHHTTG-GGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHT-CSE
T ss_pred             EEEeccCCCC--------HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHhhhcccccCCCHHHHHHHHHHcC-CCe
Confidence            9874433321        1112333333433332 232 22211    11111223468999999999996 864

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.84  E-value=1.2e-07  Score=89.88  Aligned_cols=100  Identities=7%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+|+|+.++|++..                                    .|...+|+.-.+-|+|||++++..+..
T Consensus       154 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             CCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             CCcCEEEEeChHHhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            78999999999999632                                    145667888889999999999998776


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .+........  .-...-...+.+...+          ..+| .+.|+.+++.+++++.| |++...+.+
T Consensus       198 ~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~  254 (318)
T 2fk8_A          198 YHPYEMAARG--KKLSFETARFIKFIVT----------EIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL  254 (318)
T ss_dssp             CCHHHHHTTC--HHHHHHHHHHHHHHHH----------HTSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred             CCchhhhhcc--ccccccccchhhHHHH----------hcCCCCcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence            5421000000  0000000111111111          1123 45689999999999985 998877665

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.83  E-value=9.6e-08  Score=89.01  Aligned_cols=162  Identities=14%  Similarity=0.213  Sum_probs=93.3

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC----CCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS----DRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~----~~~~f~~gvpgSF  131 (360)
                      ++..+|+|+|||+|..+..+...                 ..+|+-.|+...-....-+.+..    .+--|..+   .+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~  126 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER-----------------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHC---AA  126 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEES---CG
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC-----------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEc---CH
Confidence            34689999999999988777542                 13344444421111111001100    01112222   23


Q ss_pred             cccc-CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          132 HNRL-FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       132 y~rl-fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      .... ++++++|+|+++.++||+..                                      ...+|+.-++-|+|||+
T Consensus       127 ~~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~  168 (285)
T 4htf_A          127 QDVASHLETPVDLILFHAVLEWVAD--------------------------------------PRSVLQTLWSVLRPGGV  168 (285)
T ss_dssp             GGTGGGCSSCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHTEEEEEE
T ss_pred             HHhhhhcCCCceEEEECchhhcccC--------------------------------------HHHHHHHHHHHcCCCeE
Confidence            3333 57799999999999999633                                      33477777899999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      +++........         .....+...|. ....+.....  .....|.++.+.+|+.+++++.| |++...+.+.
T Consensus       169 l~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aG-f~v~~~~~~~  233 (285)
T 4htf_A          169 LSLMFYNAHGL---------LMHNMVAGNFD-YVQAGMPKKK--KRTLSPDYPRDPTQVYLWLEEAG-WQIMGKTGVR  233 (285)
T ss_dssp             EEEEEEBHHHH---------HHHHHHTTCHH-HHHTTCCCC------CCCSCCBCHHHHHHHHHHTT-CEEEEEEEES
T ss_pred             EEEEEeCCchH---------HHHHHHhcCHH-HHhhhccccc--cccCCCCCCCCHHHHHHHHHHCC-CceeeeeeEE
Confidence            99997654321         00011111122 2222322111  11234567789999999999995 9999888774

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.81  E-value=5.5e-08  Score=87.05  Aligned_cols=173  Identities=16%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC-----cceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR-----QYYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~-----~~f~~gvpgS  130 (360)
                      +...+|+|+|||+|..+..+...                 ..+|+--|....=....-+.+....     .--+.-+-+.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   91 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-----------------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN   91 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-----------------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEec
Confidence            34579999999999988777542                 1345555553211111111121100     0011112223


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +..-.+|++++|+++++.++|++...                                   .+...+|+.-.+-|+|||+
T Consensus        92 ~~~~~~~~~~~D~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~  136 (235)
T 3sm3_A           92 ASSLSFHDSSFDFAVMQAFLTSVPDP-----------------------------------KERSRIIKEVFRVLKPGAY  136 (235)
T ss_dssp             TTSCCSCTTCEEEEEEESCGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEE
T ss_pred             ccccCCCCCceeEEEEcchhhcCCCH-----------------------------------HHHHHHHHHHHHHcCCCeE
Confidence            44445788999999999999996541                                   1234578888899999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcc--cCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDS--FNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~--f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      +++...++.....       .+.......+......|.........  .....++++.+|+++++++.| |++..++...
T Consensus       137 l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~~~~~~~~~  208 (235)
T 3sm3_A          137 LYLVEFGQNWHLK-------LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FEIDYFRVKE  208 (235)
T ss_dssp             EEEEEEBCCTTSH-------HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EEEEEEEEEE
T ss_pred             EEEEECCcchhHH-------HHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CEEEEEEecc
Confidence            9999877653311       11122222222221222111000000  022346789999999999995 9999888653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.79  E-value=2.8e-08  Score=90.34  Aligned_cols=145  Identities=14%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccc-
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNR-  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~r-  134 (360)
                      +...+|+|+|||+|..+..+.+.            +     .+|+-.|+.. +.-...+..       +..+.+....- 
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~------------~-----~~v~gvD~s~-~~~~~a~~~-------~~~~~~d~~~~~   94 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE------------G-----IESIGVDINE-DMIKFCEGK-------FNVVKSDAIEYL   94 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH------------T-----CCEEEECSCH-HHHHHHHTT-------SEEECSCHHHHH
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC------------C-----CcEEEEECCH-HHHHHHHhh-------cceeeccHHHHh
Confidence            34579999999999987655331            1     2455556532 111111111       11122233332 


Q ss_pred             -cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 -LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 -lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                       -+|++++|+|+|+.++||+..                                    .|+..+|+.-.+-|+|||++++
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~  138 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLDP------------------------------------ERLFELLSLCYSKMKYSSYIVI  138 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHBCTTCCEEE
T ss_pred             hhcCCCCeeEEEECCchhhCCc------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence             478899999999999999642                                    2466788888899999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      ..++...           ... +...+        +.       .-..+.++.+++..++++.| |++...+.+.+
T Consensus       139 ~~~~~~~-----------~~~-~~~~~--------~~-------~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~  186 (240)
T 3dli_A          139 ESPNPTS-----------LYS-LINFY--------ID-------PTHKKPVHPETLKFILEYLG-FRDVKIEFFEE  186 (240)
T ss_dssp             EEECTTS-----------HHH-HHHHT--------TS-------TTCCSCCCHHHHHHHHHHHT-CEEEEEEEECC
T ss_pred             EeCCcch-----------hHH-HHHHh--------cC-------ccccccCCHHHHHHHHHHCC-CeEEEEEEecc
Confidence            8865332           111 11111        11       11245678899999999995 99999888754

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.79  E-value=6.2e-08  Score=89.65  Aligned_cols=159  Identities=16%  Similarity=0.213  Sum_probs=91.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHH---HhhCCCCCcceEeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNAL---YKSLPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~l---F~~l~~~~~~f~~gvpgSFy  132 (360)
                      +...+|+|+|||+|..+..+...               .|..+|+--|...+-....   +......+--|..   +...
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~---------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~d~~   97 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKN---------------NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQ---ANIF   97 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---CCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE---cccc
Confidence            44679999999999888766432               1335666666632211111   1111111112222   2345


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .-.+|++++|+|+++.++||+..                                      ...+|+.-.+-|+|||+++
T Consensus        98 ~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~  139 (276)
T 3mgg_A           98 SLPFEDSSFDHIFVCFVLEHLQS--------------------------------------PEEALKSLKKVLKPGGTIT  139 (276)
T ss_dssp             GCCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             cCCCCCCCeeEEEEechhhhcCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence            55678899999999999999644                                      2346777778999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHH-HcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMA-KMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv-~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +.............  .....+.. ..+..+. ..|.             ...+.+++..++++.| |++..++..
T Consensus       140 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~l~~~l~~aG-f~~v~~~~~  198 (276)
T 3mgg_A          140 VIEGDHGSCYFHPE--GKKAIEAW-NCLIRVQAYMKG-------------NSLVGRQIYPLLQESG-FEKIRVEPR  198 (276)
T ss_dssp             EEEECGGGCEEESC--CHHHHHHH-HHHHHHHHHTTC-------------CTTGGGGHHHHHHHTT-CEEEEEEEE
T ss_pred             EEEcCCCCceECCC--cHHHHHHH-HHHHHHHHhcCC-------------CcchHHHHHHHHHHCC-CCeEEEeeE
Confidence            98754432210000  01111222 2222221 1121             1235688999999995 999888865

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.8e-07  Score=87.91  Aligned_cols=200  Identities=15%  Similarity=0.136  Sum_probs=103.8

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----C-C-CCCcceEeecCC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----L-P-SDRQYYAAGVPG  129 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l-~-~~~~~f~~gvpg  129 (360)
                      ....+|+|+|||+|..+..+.+..              .+..+|+-.|+.. .+-...+.    . . ..+--|..+   
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~v~~~~~---   96 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQEL--------------KPFEQIIGSDLSA-TMIKTAEVIKEGSPDTYKNVSFKIS---   96 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHS--------------SCCSEEEEEESCH-HHHHHHHHHHHHCC-CCTTEEEEEC---
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCCH-HHHHHHHHHHHhccCCCCceEEEEc---
Confidence            346899999999999998887422              0123344444321 11111111    0 0 001112221   


Q ss_pred             ccccccCCC------CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          130 SFHNRLFPK------ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       130 SFy~rlfP~------~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                      .+..-.++.      +++|+|+++.++||+ .                                      +..+|+.-++
T Consensus        97 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--------------------------------------~~~~l~~~~~  137 (299)
T 3g5t_A           97 SSDDFKFLGADSVDKQKIDMITAVECAHWF-D--------------------------------------FEKFQRSAYA  137 (299)
T ss_dssp             CTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--------------------------------------HHHHHHHHHH
T ss_pred             CHHhCCccccccccCCCeeEEeHhhHHHHh-C--------------------------------------HHHHHHHHHH
Confidence            122222344      899999999999997 2                                      3346777778


Q ss_pred             HhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc-CCHHHHHHHHHhCCc----
Q 018119          204 ELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF-PTPQELKALLKRNAS----  278 (360)
Q Consensus       204 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~-ps~eE~~~~ie~~g~----  278 (360)
                      -|+|||+|++...+.+.....         ..+...+.++....        ...-|++. |..+.+++.++..|-    
T Consensus       138 ~LkpgG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~~~--------~~~~~~w~~p~~~~~~~~l~~~gfp~~~  200 (299)
T 3g5t_A          138 NLRKDGTIAIWGYADPIFPDY---------PEFDDLMIEVPYGK--------QGLGPYWEQPGRSRLRNMLKDSHLDPEL  200 (299)
T ss_dssp             HEEEEEEEEEEEEEEEECTTC---------GGGTTHHHHHHHCT--------TTTGGGSCTTHHHHHHTTTTTCCCCTTT
T ss_pred             hcCCCcEEEEEecCCccccCc---------HHHHHHHHHhccCc--------ccccchhhchhhHHHHHhhhccCCChHH
Confidence            999999999865543321100         01112222222210        02234444 888888998888752    


Q ss_pred             eeEEEEEEeccchhh---------------hcCCChhHHHHHHHHhhhH-HHHh--hhch--hHHHHHHHH
Q 018119          279 FSIEKFEPLALSAQR---------------QLATNTPTVVSHLRANLEI-LVKE--HFGN--GIIEDLFDR  329 (360)
Q Consensus       279 F~I~~~e~~~~~~~~---------------~~~~~~~~~~~~iRA~~e~-~l~~--hfg~--~i~delf~r  329 (360)
                      |.=.....+.+..+.               .....-..+.+++|++..- -...  .-++  ++++++.++
T Consensus       201 f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~  271 (299)
T 3g5t_A          201 FHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKE  271 (299)
T ss_dssp             EEEEEEEEECGGGGGCHHHHHHCSSCCCCCEEEECHHHHHHHHTTSHHHHHHHHCGGGTTSCCHHHHHHHH
T ss_pred             cCcceEEEecccccccccccccCCCCceeeeccccHHHHHHHHHHhHHHHHHHhcccCCchhhHHHHHHHH
Confidence            343333344321110               0011345788888877652 1112  2233  677776666

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.77  E-value=1.1e-07  Score=84.31  Aligned_cols=159  Identities=15%  Similarity=0.069  Sum_probs=90.6

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      .-+|+|+|||+|..+..+...                 ..+|+--|+.. +.-...+.....+--|..+   .+..- +|
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~---d~~~~-~~  104 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL-----------------ADRVTALDGSA-EMIAEAGRHGLDNVEFRQQ---DLFDW-TP  104 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH-----------------SSEEEEEESCH-HHHHHHGGGCCTTEEEEEC---CTTSC-CC
T ss_pred             CCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCH-HHHHHHHhcCCCCeEEEec---ccccC-CC
Confidence            349999999999988776543                 03455555532 1112222211011123333   34333 88


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|+|+++.++||+..                                    .++..+|+.-.+-|+|||++++...+
T Consensus       105 ~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPD------------------------------------DRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             SSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCceeEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999999999999999543                                    12456788888999999999999877


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++....         ...+......... ..+..  -..+.....+++.+|+.++++..| |+|+..+..
T Consensus       149 ~~~~~~---------~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~  205 (218)
T 3ou2_A          149 DHERRL---------EQQDDSEPEVAVR-RTLQD--GRSFRIVKVFRSPAELTERLTALG-WSCSVDEVH  205 (218)
T ss_dssp             CCC---------------------CEEE-EECTT--SCEEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             CCcccc---------chhhhccccccee-eecCC--cchhhHhhcCCCHHHHHHHHHHCC-CEEEeeecc
Confidence            743210         0111000000000 00000  000111233679999999999995 998877764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.75  E-value=6.9e-08  Score=87.36  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC-cceEeecCCccccccCC
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR-QYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~-~~f~~gvpgSFy~rlfP  137 (360)
                      -+|+|+|||+|..+..+..                 +..+|+-.|....=....-+.++... .--+.-+.+.+.. +.|
T Consensus        68 ~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  129 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS-----------------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WRP  129 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB-----------------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CCC
T ss_pred             CCEEEeCCCCCHHHHHHHh-----------------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CCC
Confidence            5999999999998886632                 22556666664221111111122110 0001122233443 447


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ..++|+|+++.++||+..                                    .|...+|+.-++-|+|||++++....
T Consensus       130 ~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          130 TELFDLIFDYVFFCAIEP------------------------------------EMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             SSCEEEEEEESSTTTSCG------------------------------------GGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCeeEEEEChhhhcCCH------------------------------------HHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            789999999999999642                                    13556788888899999999987654


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ....                                   ..-|.|..+.+++.++++..| |++..++...
T Consensus       174 ~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  208 (235)
T 3lcc_A          174 ITDH-----------------------------------VGGPPYKVDVSTFEEVLVPIG-FKAVSVEENP  208 (235)
T ss_dssp             CSCC-----------------------------------CSCSSCCCCHHHHHHHHGGGT-EEEEEEEECT
T ss_pred             cccc-----------------------------------CCCCCccCCHHHHHHHHHHcC-CeEEEEEecC
Confidence            3321                                   112445578999999999985 9999998764

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.72  E-value=3.8e-08  Score=91.92  Aligned_cols=101  Identities=17%  Similarity=0.223  Sum_probs=65.5

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc-ceEeecCCccccccC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ-YYAAGVPGSFHNRLF  136 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~-~f~~gvpgSFy~rlf  136 (360)
                      .-+|+|+|||+|..|..+...            +     .+|+-.|+-.    ...+......+ -|..   +++..--|
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~------------~-----~~v~gvD~s~----~ml~~a~~~~~v~~~~---~~~e~~~~   95 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF------------F-----ERVHAVDPGE----AQIRQALRHPRVTYAV---APAEDTGL   95 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT------------C-----SEEEEEESCH----HHHHTCCCCTTEEEEE---CCTTCCCC
T ss_pred             CCCEEEEcCCCCHHHHHHHHh------------C-----CEEEEEeCcH----HhhhhhhhcCCceeeh---hhhhhhcc
Confidence            458999999999988776321            0     2445555421    11111111112 2333   34666678


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++|+|+|+|+.++||+.                                       ...||+.-++-|||||+|++...
T Consensus        96 ~~~sfD~v~~~~~~h~~~---------------------------------------~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           96 PPASVDVAIAAQAMHWFD---------------------------------------LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             CSSCEEEEEECSCCTTCC---------------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCcccEEEEeeehhHhh---------------------------------------HHHHHHHHHHHcCCCCEEEEEEC
Confidence            999999999999999952                                       12356666678999999999887


Q ss_pred             CCCCC
Q 018119          217 CLPDG  221 (360)
Q Consensus       217 g~~~~  221 (360)
                      +....
T Consensus       137 ~~~~~  141 (257)
T 4hg2_A          137 GLTRV  141 (257)
T ss_dssp             CCCBC
T ss_pred             CCCCC
Confidence            76543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.72  E-value=1.5e-07  Score=83.01  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=86.3

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCCC-CcceEeecCCccccc
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPSD-RQYYAAGVPGSFHNR  134 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~~-~~~f~~gvpgSFy~r  134 (360)
                      +|+|+|||+|..+..+...                +..+|+--|+... .-...+    ..... +--|..+   .+..-
T Consensus        46 ~vLdiG~G~G~~~~~l~~~----------------~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~---d~~~~  105 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ----------------SDFSIRALDFSKH-MNEIALKNIADANLNDRIQIVQG---DVHNI  105 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH----------------SEEEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEEC---BTTBC
T ss_pred             EEEEECCCCCHHHHHHHHc----------------CCCeEEEEECCHH-HHHHHHHHHHhccccCceEEEEc---CHHHC
Confidence            9999999999987776542                2255566665321 111111    11111 1123222   34444


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+|+++.++||+..                                      ...+|+.-.+-|+|||++++.
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWED--------------------------------------VATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcccccEEEECchHhhccC--------------------------------------HHHHHHHHHHhCCCCCEEEEE
Confidence            578899999999999999622                                      344777778899999999987


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ..-...          ...+.+...+...   ..--.   ..+.......+.+++.+++++.| |++..+..
T Consensus       148 ~~~~~~----------~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~  202 (219)
T 3dlc_A          148 GGFGNK----------ELRDSISAEMIRK---NPDWK---EFNRKNISQENVERFQNVLDEIG-ISSYEIIL  202 (219)
T ss_dssp             ECCSSH----------HHHHHHHHHHHHH---CTTHH---HHHHHHSSHHHHHHHHHHHHHHT-CSSEEEEE
T ss_pred             eccCcH----------HHHHHHHHHHHHh---HHHHH---hhhhhccccCCHHHHHHHHHHcC-CCeEEEEe
Confidence            422111          1222333332221   10000   00001122348899999999996 87766553

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.72  E-value=2.1e-07  Score=83.11  Aligned_cols=133  Identities=8%  Similarity=-0.010  Sum_probs=83.1

Q ss_pred             ceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcC----------CCCccceEEecCCCCCchHHHHh
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYG----------HDKLEFQVFFNDLVSNDFNALYK  114 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~----------~~~p~~~v~~nDlp~NDFn~lF~  114 (360)
                      ...+|+|+|||+|.++..+.+            .+|+..+++.....          ...+.++++..|+          
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~----------   91 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF----------   91 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC----------
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc----------
Confidence            357999999999999998876            34444433321100          0011233333343          


Q ss_pred             hCCCCCcceEeecCCccccccCCC-CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhh
Q 018119          115 SLPSDRQYYAAGVPGSFHNRLFPK-ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKG  193 (360)
Q Consensus       115 ~l~~~~~~f~~gvpgSFy~rlfP~-~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D  193 (360)
                                       ..-.+++ +++|+|++..++||+..                                    .|
T Consensus        92 -----------------~~l~~~~~~~fD~v~~~~~l~~l~~------------------------------------~~  118 (203)
T 1pjz_A           92 -----------------FALTARDIGHCAAFYDRAAMIALPA------------------------------------DM  118 (203)
T ss_dssp             -----------------SSSTHHHHHSEEEEEEESCGGGSCH------------------------------------HH
T ss_pred             -----------------ccCCcccCCCEEEEEECcchhhCCH------------------------------------HH
Confidence                             2222333 68999999999999532                                    13


Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119          194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL  273 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i  273 (360)
                      ...+|+.-++-|+|||++++.....+..                                  ...-|.|..+.+|+++.+
T Consensus       119 ~~~~l~~~~r~LkpgG~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~el~~~~  164 (203)
T 1pjz_A          119 RERYVQHLEALMPQACSGLLITLEYDQA----------------------------------LLEGPPFSVPQTWLHRVM  164 (203)
T ss_dssp             HHHHHHHHHHHSCSEEEEEEEEESSCSS----------------------------------SSSSCCCCCCHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEEecCcc----------------------------------ccCCCCCCCCHHHHHHHh
Confidence            4557788889999999965554322110                                  011234457899999999


Q ss_pred             HhCCceeEEEEEEec
Q 018119          274 KRNASFSIEKFEPLA  288 (360)
Q Consensus       274 e~~g~F~I~~~e~~~  288 (360)
                      +.  +|+|..++..+
T Consensus       165 ~~--gf~i~~~~~~~  177 (203)
T 1pjz_A          165 SG--NWEVTKVGGQD  177 (203)
T ss_dssp             CS--SEEEEEEEESS
T ss_pred             cC--CcEEEEecccc
Confidence            86  49999888764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.71  E-value=1.3e-07  Score=86.30  Aligned_cols=168  Identities=17%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..+..+...            +   + -+|+--|+.. +.-...+. +...+--|..   +.+..--
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~------------~---~-~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~---~d~~~~~  103 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEH------------G---A-KKVLGIDLSE-RMLTEAKRKTTSPVVCYEQ---KAIEDIA  103 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT------------T---C-SEEEEEESCH-HHHHHHHHHCCCTTEEEEE---CCGGGCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHc------------C---C-CEEEEEECCH-HHHHHHHHhhccCCeEEEE---cchhhCC
Confidence            4689999999999877766431            0   1 1566666642 22222222 2211122333   3344445


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++++..
T Consensus       104 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          104 IEPDAYNVVLSSLALHYIAS--------------------------------------FDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCeEEEEEchhhhhhhh--------------------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence            78899999999999999632                                      4457778889999999999986


Q ss_pred             cCCCCCCCC------CCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          216 PCLPDGISP------GECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       216 ~g~~~~~~~------~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      .........      ...+....+.     +.....++... ..+..-....|.+|.+|+.+++++.| |++..++...+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~~~  218 (253)
T 3g5l_A          146 EHPVFTADGRQDWYTDETGNKLHWP-----VDRYFNESMRT-SHFLGEDVQKYHRTVTTYIQTLLKNG-FQINSVIEPEP  218 (253)
T ss_dssp             ECHHHHSSSSCSCEECSSCCEEEEE-----ECCTTCCCEEE-EEETTEEEEEECCCHHHHHHHHHHTT-EEEEEEECCCC
T ss_pred             CCCccccCccccceeccCCceEEEE-----eccccccceEE-EeeccccCccEecCHHHHHHHHHHcC-CeeeeeecCCC
Confidence            432100000      0000000000     00000011100 00001134567789999999999995 99998876543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.71  E-value=6.8e-07  Score=80.08  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             eeEEeeecCCCCCccHHHHH--------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQ--------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPG  129 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~--------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpg  129 (360)
                      ..+|+|+|||+|..+..+..        ..++..+++         .+++...|+                         
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~---------~~~~~~~d~-------------------------   93 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR---------GVFVLKGTA-------------------------   93 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT---------TCEEEECBT-------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc---------CCEEEEccc-------------------------
Confidence            56899999999999887642        222222211         133333333                         


Q ss_pred             ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          130 SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                        ..--+|++++|+|+++.++||+..                                      ...+|+.-.+-|+|||
T Consensus        94 --~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG  133 (219)
T 1vlm_A           94 --ENLPLKDESFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGG  133 (219)
T ss_dssp             --TBCCSCTTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEE
T ss_pred             --ccCCCCCCCeeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHcCCCc
Confidence              222356789999999999999632                                      2346777778899999


Q ss_pred             eEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          210 LMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       210 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++++........           +.   ..+..+ ..+       ..+.-...+.+.+++.+++++.| |++..+...
T Consensus       134 ~l~i~~~~~~~~-----------~~---~~~~~~-~~~-------~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~  188 (219)
T 1vlm_A          134 YLIVGIVDRESF-----------LG---REYEKN-KEK-------SVFYKNARFFSTEELMDLMRKAG-FEEFKVVQT  188 (219)
T ss_dssp             EEEEEEECSSSH-----------HH---HHHHHT-TTC--------CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             EEEEEEeCCccH-----------HH---HHHHHH-hcC-------cchhcccccCCHHHHHHHHHHCC-CeEEEEecc
Confidence            999987654321           11   111111 111       12333456689999999999995 998887754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.70  E-value=9.6e-08  Score=85.08  Aligned_cols=143  Identities=12%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC---CCCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL---PSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|..+..+....              .|..+|+--|....-....=+.+   ...+--|..+   .+..
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~~   99 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMV--------------GEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS---EENK   99 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHH--------------TTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC---BTTB
T ss_pred             CCCEEEEEecCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEec---cccc
Confidence            35699999999999988775432              13456777776321111111111   1011223333   3444


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.+|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++++
T Consensus       100 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i  141 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAFTFHELSE--------------------------------------PLKFLEELKRVAKPFAYLAI  141 (219)
T ss_dssp             CSSCSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeeEEEeehhhhhcCC--------------------------------------HHHHHHHHHHHhCCCeEEEE
Confidence            4578899999999999999632                                      34467777789999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ...........                                 .......+.+++...+++.| |++.....+.
T Consensus       142 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  182 (219)
T 3dh0_A          142 IDWKKEERDKG---------------------------------PPPEEVYSEWEVGLILEDAG-IRVGRVVEVG  182 (219)
T ss_dssp             EEECSSCCSSS---------------------------------CCGGGSCCHHHHHHHHHHTT-CEEEEEEEET
T ss_pred             EEecccccccC---------------------------------CchhcccCHHHHHHHHHHCC-CEEEEEEeeC
Confidence            86554432110                                 01122458999999999995 9988877653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.69  E-value=6.4e-08  Score=87.12  Aligned_cols=151  Identities=14%  Similarity=0.088  Sum_probs=88.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCCCcceEeecCCccccccC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      .-+|+|+|||+|..+..+...               .+  +|+--|+... .-...+ ..+. +--|..+   .+.. ++
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~---------------~~--~v~gvD~s~~-~~~~a~~~~~~-~v~~~~~---d~~~-~~   99 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEH---------------FN--DITCVEASEE-AISHAQGRLKD-GITYIHS---RFED-AQ   99 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT---------------CS--CEEEEESCHH-HHHHHHHHSCS-CEEEEES---CGGG-CC
T ss_pred             CCcEEEECCCCCHHHHHHHHh---------------CC--cEEEEeCCHH-HHHHHHHhhhC-CeEEEEc---cHHH-cC
Confidence            357999999999887765321               11  3455555321 111111 2221 1123333   2332 36


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH-HHhccCCeEEEEe
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA-QELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra-~EL~pGG~lvl~~  215 (360)
                      |++++|+|+++.+|||+..                                      ...+|+.-+ +-|+|||++++..
T Consensus       100 ~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          100 LPRRYDNIVLTHVLEHIDD--------------------------------------PVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             CSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCcccEEEEhhHHHhhcC--------------------------------------HHHHHHHHHHHhcCCCCEEEEEc
Confidence            8899999999999999643                                      234677777 8899999999988


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhh----hcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQ----VDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~----~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +.....           ..... .     ..|......    .+...-...+.+.+++.+++++.| |++.+.+.+
T Consensus       142 ~~~~~~-----------~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  199 (250)
T 2p7i_A          142 PNANAV-----------SRQIA-V-----KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGI  199 (250)
T ss_dssp             ECTTCH-----------HHHHH-H-----HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             CChHHH-----------HHHHH-H-----HcCccccchhcccccccccccccCCHHHHHHHHHHCC-CeEEEEeee
Confidence            654321           11111 1     122222110    000111123569999999999995 999888754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.68  E-value=9.9e-08  Score=86.81  Aligned_cols=146  Identities=13%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc-ceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ-YYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~-~f~~gvpgSFy~r  134 (360)
                      ....+|+|+|||+|..+..+.....                .+|+.-|....--...=+.+....+ -|..   +.+..-
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~----------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~  152 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLY----------------ATTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASMETA  152 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC----------------SEEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCGGGC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhc----------------CEEEEEeCCHHHHHHHHHHhccCCceEEEE---ccHHHC
Confidence            3467999999999998887754320                1333344321111111111111111 1222   234444


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+|+++.++||++.                                    .|+..+|+.-.+-|+|||++++.
T Consensus       153 ~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~  196 (254)
T 1xtp_A          153 TLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCeEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            467889999999999999642                                    14566888888999999999998


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .........                              +.....+.+.++.+++++++++.| |++.+.+..
T Consensus       197 ~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  238 (254)
T 1xtp_A          197 ENCSTGDRF------------------------------LVDKEDSSLTRSDIHYKRLFNESG-VRVVKEAFQ  238 (254)
T ss_dssp             EEBC--CCE------------------------------EEETTTTEEEBCHHHHHHHHHHHT-CCEEEEEEC
T ss_pred             ecCCCcccc------------------------------eecccCCcccCCHHHHHHHHHHCC-CEEEEeeec
Confidence            753321100                              000122345679999999999995 999888765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.66  E-value=1.7e-06  Score=82.00  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCC-CCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPS-DRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~-~~~~f~~gvpgSF  131 (360)
                      ...+|+|+|||+|..++.+....                ..+|+--|+.. +.-...+    ...- .+--|..+   .+
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~v~~~~~---d~  176 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF----------------GSRVEGVTLSA-AQADFGNRRARELRIDDHVRSRVC---NM  176 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEEC---CT
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc----------------CCEEEEEeCCH-HHHHHHHHHHHHcCCCCceEEEEC---Ch
Confidence            45799999999999988776531                02334444321 1111111    1100 01112222   23


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--+|++++|+|+++.++||+.                                       ...+|+.-.+-|+|||++
T Consensus       177 ~~~~~~~~~fD~V~~~~~l~~~~---------------------------------------~~~~l~~~~~~LkpgG~l  217 (312)
T 3vc1_A          177 LDTPFDKGAVTASWNNESTMYVD---------------------------------------LHDLFSEHSRFLKVGGRY  217 (312)
T ss_dssp             TSCCCCTTCEEEEEEESCGGGSC---------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             hcCCCCCCCEeEEEECCchhhCC---------------------------------------HHHHHHHHHHHcCCCcEE
Confidence            33347789999999999999962                                       123677777899999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ++......+.....    ...+..+...+                  .| ..++.+++.+++++.| |++..++.+.
T Consensus       218 ~~~~~~~~~~~~~~----~~~~~~~~~~~------------------~~-~~~s~~~~~~~l~~aG-f~~~~~~~~~  270 (312)
T 3vc1_A          218 VTITGCWNPRYGQP----SKWVSQINAHF------------------EC-NIHSRREYLRAMADNR-LVPHTIVDLT  270 (312)
T ss_dssp             EEEEEEECTTTCSC----CHHHHHHHHHH------------------TC-CCCBHHHHHHHHHTTT-EEEEEEEECH
T ss_pred             EEEEccccccccch----hHHHHHHHhhh------------------cC-CCCCHHHHHHHHHHCC-CEEEEEEeCC
Confidence            99876655432100    01112111110                  11 3788999999999985 9999888773

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.65  E-value=2.6e-07  Score=83.41  Aligned_cols=147  Identities=14%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC-CCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS-DRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~-~~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..+..+...                 ..+|+--|+.. +.-...+.... .+--|..+   .+..--
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~---d~~~~~  111 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT-----------------GYKAVGVDISE-VMIQKGKERGEGPDLSFIKG---DLSSLP  111 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHHTTTCBTTEEEEEC---BTTBCS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc-----------------CCeEEEEECCH-HHHHHHHhhcccCCceEEEc---chhcCC
Confidence            3469999999999988766442                 13555566532 22222222211 11123333   344445


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++++..
T Consensus       112 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          112 FENEQFEAIMAINSLEWTEE--------------------------------------PLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             SCTTCEEEEEEESCTTSSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCccEEEEcChHhhccC--------------------------------------HHHHHHHHHHHhCCCeEEEEEE
Confidence            78899999999999999632                                      2346777778999999999998


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .+.......         .    .+.           ............+.+++..++++.| |++...+.+
T Consensus       154 ~~~~~~~~~---------~----~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  200 (242)
T 3l8d_A          154 LGPTAKPRE---------N----SYP-----------RLYGKDVVCNTMMPWEFEQLVKEQG-FKVVDGIGV  200 (242)
T ss_dssp             ECTTCGGGG---------G----GGG-----------GGGTCCCSSCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             cCCcchhhh---------h----hhh-----------hhccccccccCCCHHHHHHHHHHcC-CEEEEeecc
Confidence            765432100         0    000           0111233455688999999999995 999887744

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.65  E-value=9.5e-07  Score=80.43  Aligned_cols=147  Identities=16%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCC-CCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPS-DRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~-~~~~f~~gvpgSF  131 (360)
                      ...+|+|+|||+|..+..+....                ..+|+--|+.. ++-...+.    ..- .+--|..   +++
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~v~~~~---~d~   95 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH----------------GITGTGIDMSS-LFTAQAKRRAEELGVSERVHFIH---NDA   95 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT----------------CCEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEE---SCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEE---CCh
Confidence            34699999999999887765421                02344444421 11111111    100 0111222   334


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..-.+ ++++|+|+|..++||+...                                      ..+|+.-++-|+|||++
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~--------------------------------------~~~l~~~~r~LkpgG~l  136 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGF--------------------------------------AGAEELLAQSLKPGGIM  136 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSS--------------------------------------HHHHHHHTTSEEEEEEE
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCH--------------------------------------HHHHHHHHHHcCCCeEE
Confidence            43333 6899999999999996531                                      23556666889999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++..+....... .        ..+...|        ..       .....+++.+++.+++++.| |++..++..
T Consensus       137 ~~~~~~~~~~~~-~--------~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  187 (256)
T 1nkv_A          137 LIGEPYWRQLPA-T--------EEIAQAC--------GV-------SSTSDFLTLPGLVGAFDDLG-YDVVEMVLA  187 (256)
T ss_dssp             EEEEEEETTCCS-S--------HHHHHTT--------TC-------SCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred             EEecCcccCCCC-h--------HHHHHHH--------hc-------ccccccCCHHHHHHHHHHCC-CeeEEEEeC
Confidence            998654332211 0        1111111        10       11125689999999999985 988776544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.64  E-value=1.4e-05  Score=73.57  Aligned_cols=165  Identities=11%  Similarity=0.012  Sum_probs=92.6

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCc-----hHHHHhh-CCC---CCcc-eEee
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSND-----FNALYKS-LPS---DRQY-YAAG  126 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ND-----Fn~lF~~-l~~---~~~~-f~~g  126 (360)
                      ...+|+|+|||+|..+..+....              .|..+|+--|+....     .-...+. +..   ..++ |..+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~--------------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~  108 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQV--------------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN  108 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--------------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            34699999999999887764432              133567777775431     2222211 111   0111 2222


Q ss_pred             cCCccc--cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          127 VPGSFH--NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       127 vpgSFy--~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                      .  .+.  ..-+|++++|+|+|+.++|++...                                      ..+++....-
T Consensus       109 d--~~~~~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~~~~~~~l  148 (275)
T 3bkx_A          109 T--NLSDDLGPIADQHFDRVVLAHSLWYFASA--------------------------------------NALALLFKNM  148 (275)
T ss_dssp             C--CTTTCCGGGTTCCCSEEEEESCGGGSSCH--------------------------------------HHHHHHHHHH
T ss_pred             C--hhhhccCCCCCCCEEEEEEccchhhCCCH--------------------------------------HHHHHHHHHH
Confidence            1  132  223578999999999999996441                                      1244444455


Q ss_pred             hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      ++|||++++.........+   ......+..+...+......        +.......+++.+++.+++++.| |++.+.
T Consensus       149 ~~~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~l~~~l~~aG-f~~~~~  216 (275)
T 3bkx_A          149 AAVCDHVDVAEWSMQPTAL---DQIGHLQAAMIQGLLYAIAP--------SDVANIRTLITPDTLAQIAHDNT-WTYTAG  216 (275)
T ss_dssp             TTTCSEEEEEEECSSCSSG---GGHHHHHHHHHHHHHHHHSC--------CTTCSCCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred             hCCCCEEEEEEecCCCCch---hhhhHHHHHHHHHHHhhccc--------cccccccccCCHHHHHHHHHHCC-CeeEEE
Confidence            5669999998766554311   01111112121111111110        11223446799999999999985 999888


Q ss_pred             EEe
Q 018119          285 EPL  287 (360)
Q Consensus       285 e~~  287 (360)
                      +.+
T Consensus       217 ~~~  219 (275)
T 3bkx_A          217 TIV  219 (275)
T ss_dssp             CCB
T ss_pred             EEe
Confidence            776

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=6.6e-08  Score=89.31  Aligned_cols=147  Identities=15%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ....+|+|+|||+|..+..+.+                 +..+|+-.|+.. ..-...+..+  +--|..   +.+..--
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~-~~~~~a~~~~--~~~~~~---~d~~~~~   89 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-----------------QGLFVYAVEPSI-VMRQQAVVHP--QVEWFT---GYAENLA   89 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-----------------TTCEEEEECSCH-HHHHSSCCCT--TEEEEC---CCTTSCC
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-----------------CCCEEEEEeCCH-HHHHHHHhcc--CCEEEE---CchhhCC
Confidence            3457999999999998876642                 236777777643 1111111111  112333   3455555


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+|+.++||+.                                      |+..+|+.-.+-|+ ||++++..
T Consensus        90 ~~~~~fD~v~~~~~l~~~~--------------------------------------~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A           90 LPDKSVDGVISILAIHHFS--------------------------------------HLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             SCTTCBSEEEEESCGGGCS--------------------------------------SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             CCCCCEeEEEEcchHhhcc--------------------------------------CHHHHHHHHHHHhC-CcEEEEEE
Confidence            7889999999999999962                                      24557777889999 99888877


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ...+....   ....   ..+.....    .            ...++++.+++. ++++.| |++...+.+.
T Consensus       131 ~~~~~~~~---~~~~---~~~~~~~~----~------------~~~~~~~~~~~~-~l~~aG-F~~v~~~~~~  179 (261)
T 3ege_A          131 FDIRLAQR---IWLY---DYFPFLWE----D------------ALRFLPLDEQIN-LLQENT-KRRVEAIPFL  179 (261)
T ss_dssp             ECGGGCCC---CGGG---GTCHHHHH----H------------HHTSCCHHHHHH-HHHHHH-CSEEEEEECC
T ss_pred             cCCchhHH---HHHH---HHHHHHhh----h------------hhhhCCCHHHHH-HHHHcC-CCceeEEEec
Confidence            65432211   1110   11111111    0            012477889999 999884 9888888764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.62  E-value=7.5e-07  Score=82.78  Aligned_cols=79  Identities=13%  Similarity=0.075  Sum_probs=56.1

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+|++..+||||.   ..                                 |...+++.-++-|+|||++++.....
T Consensus       151 ~~FD~V~~~~~l~~l~---~~---------------------------------~~~~~l~~~~~~LkpGG~l~l~~~~~  194 (252)
T 2gb4_A          151 GKFDRIWDRGALVAIN---PG---------------------------------DHDRYADIILSLLRKEFQYLVAVLSY  194 (252)
T ss_dssp             CCEEEEEESSSTTTSC---GG---------------------------------GHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEhhhhhhCC---HH---------------------------------HHHHHHHHHHHHcCCCeEEEEEEEec
Confidence            7999999999999963   21                                 24457777889999999997554332


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      +..                                  ...-|.|..+.+|+.++++. + |+|..++.+++
T Consensus       195 ~~~----------------------------------~~~g~~~~~~~~el~~~l~~-~-f~v~~~~~~~~  229 (252)
T 2gb4_A          195 DPT----------------------------------KHAGPPFYVPSAELKRLFGT-K-CSMQCLEEVDA  229 (252)
T ss_dssp             CTT----------------------------------SCCCSSCCCCHHHHHHHHTT-T-EEEEEEEEEEC
T ss_pred             CCc----------------------------------cCCCCCCCCCHHHHHHHhhC-C-eEEEEEecccc
Confidence            110                                  00124455789999999986 3 99999987653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.62  E-value=1.8e-07  Score=86.76  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ..++|+|+|+.+|||+..-+                                  .|+...|+.-++-|||||+|++....
T Consensus       154 ~~~fD~V~~~~~l~~i~~~~----------------------------------~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCSL----------------------------------DAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             cCCCCEeeehHHHHHhcCCH----------------------------------HHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            46999999999999965421                                  24667788888999999999998643


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ..+.           +.           .|-        -.++.+..+.+|+.+.+++.| |++..++..
T Consensus       200 ~~~~-----------~~-----------~g~--------~~~~~~~~~~~~l~~~l~~aG-F~i~~~~~~  238 (263)
T 2a14_A          200 RLPS-----------YM-----------VGK--------REFSCVALEKGEVEQAVLDAG-FDIEQLLHS  238 (263)
T ss_dssp             SCCE-----------EE-----------ETT--------EEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             cCcc-----------ce-----------eCC--------eEeeccccCHHHHHHHHHHCC-CEEEEEeec
Confidence            2211           00           110        123445669999999999995 999988876

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.60  E-value=2.2e-07  Score=82.49  Aligned_cols=139  Identities=16%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      ..+|+|+|||+|..+..+.+.                 ..+|+--|.... .-...+...  +.-+..   +.+..-. +
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~-~~~~a~~~~--~~~~~~---~d~~~~~-~   99 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA-----------------GFDVDATDGSPE-LAAEASRRL--GRPVRT---MLFHQLD-A   99 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT-----------------TCEEEEEESCHH-HHHHHHHHH--TSCCEE---CCGGGCC-C
T ss_pred             CCcEEEECCCCCHHHHHHHHc-----------------CCeEEEECCCHH-HHHHHHHhc--CCceEE---eeeccCC-C
Confidence            469999999999988776532                 135555665321 111111110  111222   2333333 7


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|+|+++.++|++..                                    .|+..+|+.-++-|+|||++++.+..
T Consensus       100 ~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          100 IDAYDAVWAHACLLHVPR------------------------------------DELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             CSCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcEEEEEecCchhhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            899999999999999542                                    24666888888999999999999754


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .....                               .+.+...+.+.+.+++.+++++.|.|++..++..
T Consensus       144 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          144 GEGEG-------------------------------RDKLARYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             CSSCE-------------------------------ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             CCccc-------------------------------ccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            33210                               0112223457899999999999844998888765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.59  E-value=1e-06  Score=84.97  Aligned_cols=150  Identities=16%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCCCc--ceEeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSDRQ--YYAAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~~~--~f~~gvpgSFy  132 (360)
                      +...+|+|+|||+|..+..+.+.               .|..+++.-|+|.     ... .......  --+.-+.|+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~-----~~~~~~~~~~~~~~~v~~~~~d~~  242 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLRE---------------HPGLQGVLLDRAE-----VVARHRLDAPDVAGRWKVVEGDFL  242 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHH---------------CTTEEEEEEECHH-----HHTTCCCCCGGGTTSEEEEECCTT
T ss_pred             cCCceEEEECCccCHHHHHHHHH---------------CCCCEEEEecCHH-----HhhcccccccCCCCCeEEEecCCC
Confidence            45689999999999887766432               1457888888863     221 1111000  01334456777


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                       .-+|  ++|+++++.+||+++.                                    .+...+|+.-++-|+|||+++
T Consensus       243 -~~~p--~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkpgG~l~  283 (348)
T 3lst_A          243 -REVP--HADVHVLKRILHNWGD------------------------------------EDSVRILTNCRRVMPAHGRVL  283 (348)
T ss_dssp             -TCCC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTCCTTCEEE
T ss_pred             -CCCC--CCcEEEEehhccCCCH------------------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence             5677  9999999999997332                                    123567888889999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      +.-.-.++...   ......++     +.-|+..|             -..++.+|+++++++.| |++.++..
T Consensus       284 i~e~~~~~~~~---~~~~~~~d-----~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~  335 (348)
T 3lst_A          284 VIDAVVPEGND---AHQSKEMD-----FMMLAART-------------GQERTAAELEPLFTAAG-LRLDRVVG  335 (348)
T ss_dssp             EEECCBCSSSS---CCHHHHHH-----HHHHHTTS-------------CCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred             EEEeccCCCCC---cchhhhcC-----hhhhhcCC-------------CcCCCHHHHHHHHHHCC-CceEEEEE
Confidence            87544433211   11111111     11122211             22578999999999996 99887765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.58  E-value=8.1e-07  Score=82.51  Aligned_cols=158  Identities=17%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC----CcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD----RQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~----~~~f~~gvpgSFy  132 (360)
                      ...+|+|+|||+|..+..+...                +..+|+-.|+...--...-+.++..    +--|..   +.+.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~  124 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA----------------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA---QDSY  124 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH----------------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE---SCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC----------------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEE---CCcc
Confidence            3579999999999988775431                1124444444321111111111100    011222   2233


Q ss_pred             cccC-CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          133 NRLF-PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       133 ~rlf-P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      .-.+ |++++|+|+++.++||+-..                                  ..|...+|+.-++-|+|||++
T Consensus       125 ~~~~~~~~~fD~v~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~LkpgG~l  170 (298)
T 1ri5_A          125 GRHMDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIARHLRPGGYF  170 (298)
T ss_dssp             TSCCCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred             ccccCCCCCcCEEEECchhhhhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEE
Confidence            3234 67899999999999995210                                  124667888888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHh------------------hh-----cc-cCCCcccCCHH
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEA------------------QV-----DS-FNLPSYFPTPQ  267 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e------------------~~-----d~-f~~P~y~ps~e  267 (360)
                      ++..+...               .+...+.   .. .....                  ++     +. -..|.++.+.+
T Consensus       171 ~~~~~~~~---------------~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~  231 (298)
T 1ri5_A          171 IMTVPSRD---------------VILERYK---QG-RMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFT  231 (298)
T ss_dssp             EEEEECHH---------------HHHHHHH---HT-CCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHH
T ss_pred             EEEECCHH---------------HHHHHHc---cC-ccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHH
Confidence            99874422               1111111   10 00000                  00     00 02345678999


Q ss_pred             HHHHHHHhCCceeEEEEEEe
Q 018119          268 ELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       268 E~~~~ie~~g~F~I~~~e~~  287 (360)
                      |++.++++.| |++...+.+
T Consensus       232 ~l~~ll~~aG-f~~v~~~~~  250 (298)
T 1ri5_A          232 RMVDGFKRLG-LSLVERKGF  250 (298)
T ss_dssp             HHHHHHHTTT-EEEEEEEEH
T ss_pred             HHHHHHHHcC-CEEEEecCH
Confidence            9999999995 999888766

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.57  E-value=9.2e-08  Score=86.96  Aligned_cols=147  Identities=12%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+.+..                ..+|+-.|....-....=+.+.....--+.-+-+.+..-.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL----------------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT----------------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC
Confidence            46799999999999887664311                12344444422111111111111000001111223444456


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++++|+|+++.++|++..                                    .++..+|+.-.+-|+|||++++...
T Consensus       143 ~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          143 EPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             CSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            7789999999999999543                                    1245678888899999999999765


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .....         ..|+                     . .-+.+.++.+++.+++++.| |++...+..
T Consensus       187 ~~~~~---------~~~~---------------------~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  225 (241)
T 2ex4_A          187 MAQEG---------VILD---------------------D-VDSSVCRDLDVVRRIICSAG-LSLLAEERQ  225 (241)
T ss_dssp             EBSSS---------EEEE---------------------T-TTTEEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             cCCCc---------ceec---------------------c-cCCcccCCHHHHHHHHHHcC-CeEEEeeec
Confidence            44321         0000                     0 01234569999999999995 999888765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.56  E-value=5.3e-07  Score=85.40  Aligned_cols=99  Identities=13%  Similarity=0.216  Sum_probs=64.0

Q ss_pred             CCceeEEEeccccccc-CCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          138 KASINFFHCSYGLQWL-SSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWL-S~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ++++|+|+|+.++||+ ...                                   .|...+|+.-++-|+|||++++.++
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESY-----------------------------------EQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSH-----------------------------------HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCH-----------------------------------HHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4599999999999996 221                                   2456688888899999999999986


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHH--cC-------CCCHhhh------------cccCCCcccCCHHHHHHHHHh
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAK--MG-------LLSEAQV------------DSFNLPSYFPTPQELKALLKR  275 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~--eG-------~i~~e~~------------d~f~~P~y~ps~eE~~~~ie~  275 (360)
                      +..               .+..+|.....  -|       ..+.+++            +....|.|..+.+++.+++++
T Consensus       157 ~~~---------------~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~  221 (313)
T 3bgv_A          157 NSF---------------ELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKK  221 (313)
T ss_dssp             CHH---------------HHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGG
T ss_pred             ChH---------------HHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHH
Confidence            532               11112211000  00       0011111            233567788899999999999


Q ss_pred             CCceeEEEEEEe
Q 018119          276 NASFSIEKFEPL  287 (360)
Q Consensus       276 ~g~F~I~~~e~~  287 (360)
                      .| |++...+.|
T Consensus       222 ~G-~~~v~~~~f  232 (313)
T 3bgv_A          222 YN-MKLVYKKTF  232 (313)
T ss_dssp             GT-EEEEEEEEH
T ss_pred             cC-cEEEEecCH
Confidence            85 999888766

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.55  E-value=5.6e-07  Score=84.17  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+|+.+|||+..-   +                               .|+..+|+.-++-|+|||+|++..
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~---~-------------------------------~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPD---L-------------------------------ASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSS---H-------------------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCCCEEEehhhhhhhcCC---H-------------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            677889999999999996541   1                               246678888889999999999974


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      .-....           +.           .|        .-..|.++.+.+|+.+++++.| |++..++.+..
T Consensus       216 ~~~~~~-----------~~-----------~~--------~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~  258 (289)
T 2g72_A          216 ALEESW-----------YL-----------AG--------EARLTVVPVSEEEVREALVRSG-YKVRDLRTYIM  258 (289)
T ss_dssp             EESCCE-----------EE-----------ET--------TEEEECCCCCHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred             ecCcce-----------EE-----------cC--------CeeeeeccCCHHHHHHHHHHcC-CeEEEeeEeec
Confidence            211100           00           01        1123566789999999999995 99999887753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.54  E-value=2.4e-07  Score=87.62  Aligned_cols=165  Identities=11%  Similarity=0.030  Sum_probs=93.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CC-cceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DR-QYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~-~~f~~gvpgSF  131 (360)
                      +...+|+|+|||+|..++.+...              ..|..+|+--|+...=....-+.+..   .. --|..   +.+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~--------------~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~  179 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYS--------------ACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR---QDA  179 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCT--------------TCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE---CCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHh--------------cCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---Cch
Confidence            34578999999999887765210              12345566666532111111111111   01 11222   345


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..-.+| +++|+|+++.++||+...                                   .....+|+.-++-|+|||++
T Consensus       180 ~~~~~~-~~fD~v~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~l  223 (305)
T 3ocj_A          180 WKLDTR-EGYDLLTSNGLNIYEPDD-----------------------------------ARVTELYRRFWQALKPGGAL  223 (305)
T ss_dssp             GGCCCC-SCEEEEECCSSGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             hcCCcc-CCeEEEEECChhhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEE
Confidence            555566 899999999999995431                                   11334777788999999999


Q ss_pred             EEEecCCCCCCCCCCCc-----hhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          212 ALIVPCLPDGISPGECS-----VLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~-----~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ++...+++.........     ...........+.+....+.            ..+++.+|+.+++++.| |++.+++.
T Consensus       224 ~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~aG-F~~v~~~~  290 (305)
T 3ocj_A          224 VTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRW------------NALRTHAQTRAQLEEAG-FTDLRFED  290 (305)
T ss_dssp             EEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSC------------CCCCCHHHHHHHHHHTT-CEEEEEEC
T ss_pred             EEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhh------------hccCCHHHHHHHHHHCC-CEEEEEEc
Confidence            99987765432211110     00001111112221111111            13579999999999996 99988875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.54  E-value=3e-06  Score=81.44  Aligned_cols=152  Identities=9%  Similarity=0.085  Sum_probs=94.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSFy  132 (360)
                      +..+|+|+|||+|..+..+.+.               .|..+++.-|+|.  .-...+.    .+-..+  +.-+.|.|.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~--v~~~~~d~~  239 (352)
T 3mcz_A          179 RARTVIDLAGGHGTYLAQVLRR---------------HPQLTGQIWDLPT--TRDAARKTIHAHDLGGR--VEFFEKNLL  239 (352)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHH---------------CTTCEEEEEECGG--GHHHHHHHHHHTTCGGG--EEEEECCTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHh---------------CCCCeEEEEECHH--HHHHHHHHHHhcCCCCc--eEEEeCCcc
Confidence            3789999999999877666422               1457788889963  3222221    111111  233445676


Q ss_pred             ccc-CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          133 NRL-FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       133 ~rl-fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ... ++++++|+++++.+||+++.                                    .+...+|+.-++-|+|||++
T Consensus       240 ~~~~~~~~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  283 (352)
T 3mcz_A          240 DARNFEGGAADVVMLNDCLHYFDA------------------------------------REAREVIGHAAGLVKPGGAL  283 (352)
T ss_dssp             CGGGGTTCCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             cCcccCCCCccEEEEecccccCCH------------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            544 24567999999999998533                                    13456788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHc-CCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKM-GLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~e-G~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      ++.-...++...      ...+..+.+..+ |+.. |             ...++.+|+++++++.| |++.+.
T Consensus       284 ~i~e~~~~~~~~------~~~~~~~~~~~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~  336 (352)
T 3mcz_A          284 LILTMTMNDDRV------TPALSADFSLHM-MVNTNH-------------GELHPTPWIAGVVRDAG-LAVGER  336 (352)
T ss_dssp             EEEEECCCTTSS------SSHHHHHHHHHH-HHHSTT-------------CCCCCHHHHHHHHHHTT-CEEEEE
T ss_pred             EEEEeccCCCCC------CCchHHHhhHHH-HhhCCC-------------CCcCCHHHHHHHHHHCC-Cceeee
Confidence            987654443211      011222222211 2211 1             11478999999999995 998773

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.53  E-value=9.4e-07  Score=78.50  Aligned_cols=153  Identities=13%  Similarity=0.083  Sum_probs=89.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccc--c
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHN--R  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~--r  134 (360)
                      ...+|+|+|||+|..+..+...                + .+++-.|....-. ...+...  .. +..   +.+..  .
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~----------------~-~~~~~~D~~~~~~-~~~~~~~--~~-~~~---~d~~~~~~   87 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN----------------G-TRVSGIEAFPEAA-EQAKEKL--DH-VVL---GDIETMDM   87 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT----------------T-CEEEEEESSHHHH-HHHHTTS--SE-EEE---SCTTTCCC
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc----------------C-CeEEEEeCCHHHH-HHHHHhC--Cc-EEE---cchhhcCC
Confidence            4579999999999888765321                1 4556666532111 1111110  11 222   22322  4


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+++++.++|++..                                      ...+|+.-.+-|+|||++++.
T Consensus        88 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~  129 (230)
T 3cc8_A           88 PYEEEQFDCVIFGDVLEHLFD--------------------------------------PWAVIEKVKPYIKQNGVILAS  129 (230)
T ss_dssp             CSCTTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHTGGGEEEEEEEEEE
T ss_pred             CCCCCccCEEEECChhhhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEEE
Confidence            467889999999999999643                                      224666667889999999998


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .+....            +..+..    +........+.-..-.....+.+.+|+.+++++.| |++..++.+.
T Consensus       130 ~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  186 (230)
T 3cc8_A          130 IPNVSH------------ISVLAP----LLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVY  186 (230)
T ss_dssp             EECTTS------------HHHHHH----HHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             eCCcch------------HHHHHH----HhcCCceeccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEecc
Confidence            755432            111111    11111110000000012335679999999999995 9999888764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.51  E-value=9.6e-06  Score=79.03  Aligned_cols=154  Identities=18%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ++..+|+|+|||+|..+..+.+.               .|..+++.-|+|.     .........+  +.-+.|+|+. -
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~-----~~~~a~~~~~--v~~~~~d~~~-~  258 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAK---------------YPSINAINFDLPH-----VIQDAPAFSG--VEHLGGDMFD-G  258 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECHH-----HHTTCCCCTT--EEEEECCTTT-C
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHh---------------CCCCEEEEEehHH-----HHHhhhhcCC--CEEEecCCCC-C
Confidence            34689999999999887766432               2567888888852     2222222122  3335567887 6


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|+.  |+++++.+||+++.                                    .+...+|+.-++-|+|||++++.=
T Consensus       259 ~p~~--D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          259 VPKG--DAIFIKWICHDWSD------------------------------------EHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             CCCC--SEEEEESCGGGBCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCC--CEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            7865  99999999996332                                    134567888889999999998875


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .-.++....   ..........+ +.-|+.-            ..-..++.+|+++++++.| |++.++...
T Consensus       301 ~~~~~~~~~---~~~~~~~~~~d-~~~~~~~------------~~g~~rt~~e~~~ll~~AG-F~~v~~~~~  355 (368)
T 3reo_A          301 YILPPSPDP---SIATKVVIHTD-ALMLAYN------------PGGKERTEKEFQALAMASG-FRGFKVASC  355 (368)
T ss_dssp             CCCCSSCCC---CHHHHHHHHHH-HHHHHHS------------SBCCCCCHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             eccCCCCCC---chhhhHHHhhh-HHHHhhc------------CCCccCCHHHHHHHHHHCC-CeeeEEEEe
Confidence            443332110   00000011111 1112210            0112578999999999995 998777654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.50  E-value=1.7e-06  Score=73.98  Aligned_cols=134  Identities=14%  Similarity=0.059  Sum_probs=84.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ....+|+|+|||+|..+..+....                 .+|+--|... +.-...+... .+--|..+.      .-
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~v~~vD~s~-~~~~~a~~~~-~~v~~~~~d------~~   70 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA-----------------TKLYCIDINV-IALKEVKEKF-DSVITLSDP------KE   70 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE-----------------EEEEEECSCH-HHHHHHHHHC-TTSEEESSG------GG
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc-----------------CeEEEEeCCH-HHHHHHHHhC-CCcEEEeCC------CC
Confidence            346799999999999987774321                 1445555432 1111111110 111122222      34


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+++++.++||+..                                      ...+|+.-.+-|+|||++++..
T Consensus        71 ~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           71 IPDNSVDFILFANSFHDMDD--------------------------------------KQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             SCTTCEEEEEEESCSTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCceEEEEEccchhcccC--------------------------------------HHHHHHHHHHhcCCCCEEEEEE
Confidence            67889999999999999632                                      3346777778999999999997


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ....+.....                                 ......+.+|++++++   +|++.+...+.
T Consensus       113 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~---Gf~~~~~~~~~  149 (170)
T 3i9f_A          113 WRKENTGIGP---------------------------------PLSIRMDEKDYMGWFS---NFVVEKRFNPT  149 (170)
T ss_dssp             ECSSCCSSSS---------------------------------CGGGCCCHHHHHHHTT---TEEEEEEECSS
T ss_pred             cCccccccCc---------------------------------hHhhhcCHHHHHHHHh---CcEEEEccCCC
Confidence            6554321100                                 0012358999999998   59998877653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.50  E-value=2.7e-07  Score=81.90  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=89.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccc-cc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHN-RL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~-rl  135 (360)
                      ...+|+|+|||+|..+..+.+.                 ..+|+--|+.. ..-...+..  ...-+..+.-..+-. ..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~~~--~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR-----------------GIEAVGVDGDR-TLVDAARAA--GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT-----------------TCEEEEEESCH-HHHHHHHHT--CSSCEEECCHHHHHTTCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC-----------------CCEEEEEcCCH-HHHHHHHHh--cccccchhhHHhhccccc
Confidence            3489999999999887665432                 13455555532 122222222  111222222111111 12


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      .+.+++|+|+++.++|+ .                                      |...+|+.-++-|+|||++++..
T Consensus       112 ~~~~~fD~v~~~~~l~~-~--------------------------------------~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A          112 PVGKDYDLICANFALLH-Q--------------------------------------DIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             CCCCCEEEEEEESCCCS-S--------------------------------------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCccEEEECchhhh-h--------------------------------------hHHHHHHHHHHHhCCCeEEEEEe
Confidence            44556999999999992 1                                      12346777788999999999998


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ......... ...         ..|....-.+...    .-...+.++++.+|+.+++++.| |++..++..
T Consensus       153 ~~~~~~~~~-~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  209 (227)
T 3e8s_A          153 LHPWSVADG-DYQ---------DGWREESFAGFAG----DWQPMPWYFRTLASWLNALDMAG-LRLVSLQEP  209 (227)
T ss_dssp             CCTTTTCTT-CCS---------CEEEEECCTTSSS----CCCCEEEEECCHHHHHHHHHHTT-EEEEEEECC
T ss_pred             cCccccCcc-ccc---------cccchhhhhcccc----CcccceEEEecHHHHHHHHHHcC-CeEEEEecC
Confidence            765432110 000         0000000000000    00246678899999999999995 999988763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.49  E-value=1.1e-05  Score=76.85  Aligned_cols=150  Identities=18%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      ++..+|+|+|||+|..+..+.+        +       .|..++..-|+|.  .-...+.    ..-..+  +.-+.+.|
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~--v~~~~~d~  228 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLT--------A-------HEDLSGTVLDLQG--PASAAHRRFLDTGLSGR--AQVVVGSF  228 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             CCCCEEEEeCCChhHHHHHHHH--------H-------CCCCeEEEecCHH--HHHHHHHhhhhcCcCcC--eEEecCCC
Confidence            3468999999999976655432        1       1446666668852  2222221    111111  22344567


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      + .-+|. ++|++++..+||+++.                                    .+...+|+.-++-|+|||++
T Consensus       229 ~-~~~p~-~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  270 (332)
T 3i53_A          229 F-DPLPA-GAGGYVLSAVLHDWDD------------------------------------LSAVAILRRCAEAAGSGGVV  270 (332)
T ss_dssp             T-SCCCC-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHTTTCEE
T ss_pred             C-CCCCC-CCcEEEEehhhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            7 45676 8999999999996332                                    12456788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++.-.-.++..+      ...+++..     |+..|             ...++.+|+++++++.| |++.++...
T Consensus       271 ~i~e~~~~~~~~------~~~~d~~~-----~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~  321 (332)
T 3i53_A          271 LVIEAVAGDEHA------GTGMDLRM-----LTYFG-------------GKERSLAELGELAAQAG-LAVRAAHPI  321 (332)
T ss_dssp             EEEECCCC---C------CHHHHHHH-----HHHHS-------------CCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEeecCCCCCc------cHHHHHHH-----HhhCC-------------CCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence            987544433211      11223211     22212             12578999999999996 998877654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.48  E-value=1e-05  Score=78.81  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      .+..+|+|+|||+|..+..+.+.               .|..++..-|+|.     ....-....+  +.-+.|.|+. -
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~-----~~~~a~~~~~--v~~~~~D~~~-~  256 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAH---------------YPTIKGVNFDLPH-----VISEAPQFPG--VTHVGGDMFK-E  256 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECHH-----HHTTCCCCTT--EEEEECCTTT-C
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHH---------------CCCCeEEEecCHH-----HHHhhhhcCC--eEEEeCCcCC-C
Confidence            34689999999999877666432               2567888888863     3322222122  3345567887 6


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|..  |+++++++||.++.                                    .|...+|+.-++-|+|||++++.=
T Consensus       257 ~p~~--D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          257 VPSG--DTILMKWILHDWSD------------------------------------QHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             CCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCC--CEEEehHHhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            8865  99999999995322                                    235567888889999999998874


Q ss_pred             cCCCCCCCCCCCchhhHHHH-HHHHHHHHHH-cCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADL-LGDCLMDMAK-MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~-l~~al~~mv~-eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .-.++....   .  ..... ...-+.-|+. .|             --.++.+|+++++++.| |++.++...
T Consensus       299 ~~~~~~~~~---~--~~~~~~~~~d~~m~~~~~~-------------g~~rt~~e~~~ll~~AG-F~~v~~~~~  353 (364)
T 3p9c_A          299 CILPVNPEA---N--PSSQGVFHVDMIMLAHNPG-------------GRERYEREFQALARGAG-FTGVKSTYI  353 (364)
T ss_dssp             CCBCSSCCS---S--HHHHHHHHHHHHHHHHCSS-------------CCCCBHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             eccCCCCCc---c--hhhhhHHHhHHHHHhcccC-------------CccCCHHHHHHHHHHCC-CceEEEEEc
Confidence            433332110   0  01110 1111111211 11             12478999999999995 998877654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.47  E-value=3.1e-06  Score=79.39  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=58.9

Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+|-+++|+++++.+|||+..-                                    |...+|+.-++-|+|||+|++.
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~------------------------------------~~~~~l~~~~~~L~pGG~l~i~  195 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPD------------------------------------VVDRVVGAYRDALAPGSYLFMT  195 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTT------------------------------------THHHHHHHHHHHSCTTCEEEEE
T ss_pred             cCCCCCCEEEEEechhhhCCcH------------------------------------HHHHHHHHHHHhCCCCcEEEEE
Confidence            3565689999999999997651                                    2445677777899999999999


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      ....+.  +    .   .++.+...+.   ..|           .|+++++.+|+.+++  . +|++...
T Consensus       196 ~~~~~~--~----~---~~~~~~~~~~---~~~-----------~~~~~~s~~ei~~~l--~-G~~l~~~  239 (274)
T 2qe6_A          196 SLVDTG--L----P---AQQKLARITR---ENL-----------GEGWARTPEEIERQF--G-DFELVEP  239 (274)
T ss_dssp             EEBCSS--C----H---HHHHHHHHHH---HHH-----------SCCCCBCHHHHHHTT--T-TCEECTT
T ss_pred             EecCcc--h----H---HHHHHHHHHH---hcC-----------CCCccCCHHHHHHHh--C-CCeEccC
Confidence            876532  1    0   0122222221   111           267789999999999  3 4887653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.46  E-value=6.5e-07  Score=80.63  Aligned_cols=167  Identities=20%  Similarity=0.188  Sum_probs=91.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~~~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..+..+.+.            +   . -+|+-.|... +.-...+.. ...+--|..   +.+..-.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~------------~---~-~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~---~d~~~~~  102 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH------------G---A-SYVLGLDLSE-KMLARARAAGPDTGITYER---ADLDKLH  102 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT------------T---C-SEEEEEESCH-HHHHHHHHTSCSSSEEEEE---CCGGGCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC------------C---C-CeEEEEcCCH-HHHHHHHHhcccCCceEEE---cChhhcc
Confidence            3569999999999887665331            0   1 1566666532 222222222 211112222   3455545


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++++..
T Consensus       103 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALHYVED--------------------------------------VARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCceEEEEeccccccch--------------------------------------HHHHHHHHHHhcCcCcEEEEEe
Confidence            78899999999999999632                                      3346777778999999999987


Q ss_pred             cCCCCCCCCCCCchhhHHHHHH-HHHHHHHHcCCCCHh----hhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          216 PCLPDGISPGECSVLASADLLG-DCLMDMAKMGLLSEA----QVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~-~al~~mv~eG~i~~e----~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .............   .+..-. ..|   ...+.....    .+-.-....|.++.+|+.+++++.| |++..++...
T Consensus       145 ~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~~~~  215 (243)
T 3bkw_A          145 EHPIYMAPARPGW---AIDAEGRRTW---PIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSG-FAIEHVEEFC  215 (243)
T ss_dssp             ECHHHHCCSSCSC---EECTTSCEEE---EECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTT-CEEEEEEECC
T ss_pred             CCcccccCcCcce---eecCCCceEE---eecccccccceeeeeccCceEEEeccHHHHHHHHHHcC-CEeeeeccCC
Confidence            4321000000000   000000 000   000000000    0000134567789999999999995 9998887653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.45  E-value=1.5e-06  Score=85.16  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=67.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh------------CCCCCcceE
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS------------LPSDRQYYA  124 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~------------l~~~~~~f~  124 (360)
                      ...+|+|+|||+|..++.+....              .|..+|+-.|+.. +.-...+.            +...+--|.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~g~~~~~~v~~~  147 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLV--------------GEHGKVIGVDMLD-NQLEVARKYVEYHAEKFFGSPSRSNVRFL  147 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--------------TTTCEEEEEECCH-HHHHHHHHTHHHHHHHHHSSTTCCCEEEE
T ss_pred             CCCEEEEecCccCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHHHHhhhhcccccCCCceEEE
Confidence            35799999999999887775432              0234566666532 12222221            111112233


Q ss_pred             eecCCccccc------cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHH
Q 018119          125 AGVPGSFHNR------LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFL  198 (360)
Q Consensus       125 ~gvpgSFy~r------lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL  198 (360)
                      .+.   +..-      -+|++++|+|+|+.++||+..                                      ...+|
T Consensus       148 ~~d---~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l  186 (383)
T 4fsd_A          148 KGF---IENLATAEPEGVPDSSVDIVISNCVCNLSTN--------------------------------------KLALF  186 (383)
T ss_dssp             ESC---TTCGGGCBSCCCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHH
T ss_pred             Ecc---HHHhhhcccCCCCCCCEEEEEEccchhcCCC--------------------------------------HHHHH
Confidence            332   3222      578899999999999999533                                      34567


Q ss_pred             HHHHHHhccCCeEEEEecCCC
Q 018119          199 LARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       199 ~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      +.-.+-|+|||+|++......
T Consensus       187 ~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          187 KEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             HHHHHHEEEEEEEEEEEEEES
T ss_pred             HHHHHHcCCCCEEEEEEeccc
Confidence            777789999999999866544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.45  E-value=1.6e-05  Score=77.29  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      ++..+|+|+|||+|..+..+...               .|..+++.-|+|.  .-...+.    ..-..+  +.-+.|+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~--~~~~a~~~~~~~~l~~~--v~~~~~d~  261 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDA---------------FPGLRGTLLERPP--VAEEARELLTGRGLADR--CEILPGDF  261 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             ccCcEEEEeCCCccHHHHHHHHH---------------CCCCeEEEEcCHH--HHHHHHHhhhhcCcCCc--eEEeccCC
Confidence            45689999999999866655332               1457788888852  2222221    110111  22334567


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      + .-+|. ++|++++..+||+.+.                                    .+...+|+.-++-|+|||++
T Consensus       262 ~-~~~p~-~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l  303 (369)
T 3gwz_A          262 F-ETIPD-GADVYLIKHVLHDWDD------------------------------------DDVVRILRRIATAMKPDSRL  303 (369)
T ss_dssp             T-TCCCS-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             C-CCCCC-CceEEEhhhhhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            7 56776 8999999999998433                                    12345788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ++.-.-.++...    .....++     +.-|+..|-             ..++.+|+++++++.| |++.++..
T Consensus       304 ~i~e~~~~~~~~----~~~~~~d-----~~~~~~~~g-------------~~~t~~e~~~ll~~aG-f~~~~~~~  355 (369)
T 3gwz_A          304 LVIDNLIDERPA----ASTLFVD-----LLLLVLVGG-------------AERSESEFAALLEKSG-LRVERSLP  355 (369)
T ss_dssp             EEEEEBCCSSCC----HHHHHHH-----HHHHHHHSC-------------CCBCHHHHHHHHHTTT-EEEEEEEE
T ss_pred             EEEEeccCCCCC----CchhHhh-----HHHHhhcCC-------------ccCCHHHHHHHHHHCC-CeEEEEEE
Confidence            997554443311    0011111     111222221             2578999999999995 99988765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.42  E-value=1.8e-06  Score=75.17  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=53.5

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|+|+++.++||+..                                    .|...+|+.-.+-|+|||++++....
T Consensus        95 ~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAAM  138 (199)
T ss_dssp             CCCEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCCceEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEEEee
Confidence            579999999999999642                                    13556788888999999998776433


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      .....+                      .+          ....+..+.+|+++.++.   |++...+.
T Consensus       139 ~~~~~~----------------------~~----------~~~~~~~~~~~l~~~~~~---f~~~~~~~  172 (199)
T 2xvm_A          139 DTADYP----------------------CT----------VGFPFAFKEGELRRYYEG---WERVKYNE  172 (199)
T ss_dssp             CCSSSC----------------------CC----------SCCSCCBCTTHHHHHTTT---SEEEEEEC
T ss_pred             ccCCcC----------------------CC----------CCCCCccCHHHHHHHhcC---CeEEEecc
Confidence            221100                      00          011245688999999874   99887764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.41  E-value=1.8e-06  Score=82.02  Aligned_cols=156  Identities=13%  Similarity=0.069  Sum_probs=94.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC---CCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS---DRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~---~~~~f~~gvpgSF  131 (360)
                      .+..+|+|+|||+|..+..+.+.               .|..+++.-|++  +.-...+.. ..   ..+  +.-+.+.+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~--v~~~~~d~  224 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQH---------------NPNAEIFGVDWA--SVLEVAKENARIQGVASR--YHTIAGSA  224 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHH---------------CTTCEEEEEECH--HHHHHHHHHHHHHTCGGG--EEEEESCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHH---------------CCCCeEEEEecH--HHHHHHHHHHHhcCCCcc--eEEEeccc
Confidence            34679999999999766655321               144788888886  443333321 10   111  22233456


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--+|.+ +|+++++.++|.++.                                    .|...+|+.-++-|+|||++
T Consensus       225 ~~~~~~~~-~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  267 (335)
T 2r3s_A          225 FEVDYGND-YDLVLLPNFLHHFDV------------------------------------ATCEQLLRKIKTALAVEGKV  267 (335)
T ss_dssp             TTSCCCSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCCCCC-CcEEEEcchhccCCH------------------------------------HHHHHHHHHHHHhCCCCcEE
Confidence            65455654 999999999997422                                    13456778888899999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++.-...++....      ..+..+.+.+ -|...+            ....++.+|+++++++.| |++.++...
T Consensus       268 ~i~e~~~~~~~~~------~~~~~~~~~~-~~~~~~------------~~~~~t~~~~~~ll~~aG-f~~~~~~~~  323 (335)
T 2r3s_A          268 IVFDFIPNSDRIT------PPDAAAFSLV-MLATTP------------NGDAYTFAEYESMFSNAG-FSHSQLHSL  323 (335)
T ss_dssp             EEEECCCCTTSSC------SHHHHHHHHH-HHHHSS------------SCCCCCHHHHHHHHHHTT-CSEEEEECC
T ss_pred             EEEeecCCCCcCC------chHHHHHHHH-HHeeCC------------CCCcCCHHHHHHHHHHCC-CCeeeEEEC
Confidence            8876554432110      1112221111 122110            123579999999999995 988777544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.41  E-value=1.3e-06  Score=80.15  Aligned_cols=105  Identities=16%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~r  134 (360)
                      ++..+|+|+|||+|..+..+...                 -.+|+--|+.. +.-...+. ++  +--|..+   .+..-
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-~~~~~a~~~~~--~~~~~~~---d~~~~  105 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS-----------------FGTVEGLELSA-DMLAIARRRNP--DAVLHHG---DMRDF  105 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT-----------------SSEEEEEESCH-HHHHHHHHHCT--TSEEEEC---CTTTC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc-----------------CCeEEEEECCH-HHHHHHHhhCC--CCEEEEC---ChHHC
Confidence            34579999999999988766331                 12455555531 12222222 22  1123333   23332


Q ss_pred             cCCCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .+ ++++|+|+++. ++||+..                                   ..|+..+|+.-++-|+|||++++
T Consensus       106 ~~-~~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A          106 SL-GRRFSAVTCMFSSIGHLAG-----------------------------------QAELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             CC-SCCEEEEEECTTGGGGSCH-----------------------------------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             Cc-cCCcCEEEEcCchhhhcCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence            23 68999999998 9999643                                   12566788888899999999999


Q ss_pred             EecCCC
Q 018119          214 IVPCLP  219 (360)
Q Consensus       214 ~~~g~~  219 (360)
                      .....+
T Consensus       150 ~~~~~~  155 (263)
T 3pfg_A          150 EPWWFP  155 (263)
T ss_dssp             CCCCCT
T ss_pred             EeccCh
Confidence            855443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.40  E-value=1.4e-06  Score=77.38  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc-ceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ-YYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~-~f~~gvpgSFy~r  134 (360)
                      ....+|+|+|||+|..+..+...                 -.+|+--|....=....-+.+....+ -|..+.   +..-
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~~  109 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPH-----------------CKRLTVIDVMPRAIGRACQRTKRWSHISWAATD---ILQF  109 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGG-----------------EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECC---TTTC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHc-----------------CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcc---hhhC
Confidence            45789999999999988776431                 02344444422111111111211111 122222   2222


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                       .|++++|+|+++.++||+...                                   .++..+|+.-++-|+|||++++.
T Consensus       110 -~~~~~fD~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~  153 (216)
T 3ofk_A          110 -STAELFDLIVVAEVLYYLEDM-----------------------------------TQMRTAIDNMVKMLAPGGHLVFG  153 (216)
T ss_dssp             -CCSCCEEEEEEESCGGGSSSH-----------------------------------HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCCCCccEEEEccHHHhCCCH-----------------------------------HHHHHHHHHHHHHcCCCCEEEEE
Confidence             267899999999999996541                                   13556788888999999999997


Q ss_pred             ec
Q 018119          215 VP  216 (360)
Q Consensus       215 ~~  216 (360)
                      ..
T Consensus       154 ~~  155 (216)
T 3ofk_A          154 SA  155 (216)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.40  E-value=1.9e-06  Score=84.82  Aligned_cols=145  Identities=14%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC--CCCCcceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL--PSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l--~~~~~~f~~gvpgSFy~r  134 (360)
                      ...+|+|+|||+|..+..+...                 ..+|+--|+.. +.-...+..  +.....|..+.   .-.-
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~-----------------g~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~---~~~l  165 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA-----------------GVRHLGFEPSS-GVAAKAREKGIRVRTDFFEKAT---ADDV  165 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT-----------------TCEEEEECCCH-HHHHHHHTTTCCEECSCCSHHH---HHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHc-----------------CCcEEEECCCH-HHHHHHHHcCCCcceeeechhh---Hhhc
Confidence            4579999999999977666431                 13566666642 222222221  10001111111   1111


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+|+|+.+|||+.+                                      ...||+.-++-|+|||+|++.
T Consensus       166 ~~~~~~fD~I~~~~vl~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          166 RRTEGPANVIYAANTLCHIPY--------------------------------------VQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             HHHHCCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEEEEEECChHHhcCC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence            256789999999999999632                                      455788888999999999998


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc-CCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF-NLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f-~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .+...              ..+        ...     .++.+ .-.+++++.++++.++++.| |++..++.+.
T Consensus       208 ~~~~~--------------~~~--------~~~-----~~~~~~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~  254 (416)
T 4e2x_A          208 DPYLG--------------DIV--------AKT-----SFDQIFDEHFFLFSATSVQGMAQRCG-FELVDVQRLP  254 (416)
T ss_dssp             EECHH--------------HHH--------HHT-----CGGGCSTTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             eCChH--------------Hhh--------hhc-----chhhhhhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence            64321              111        111     11111 23456789999999999995 9999888763

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.40  E-value=5.5e-07  Score=84.62  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=63.7

Q ss_pred             CCceeEEE-ecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          138 KASINFFH-CSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       138 ~~S~h~~~-Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ++++|+|+ ++.++||++.                                    .|...+|+.-++-|+|||+|++...
T Consensus       148 ~~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDE------------------------------------ADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEECCcccccCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEee
Confidence            57899877 5688998532                                    2456688888899999999999987


Q ss_pred             CCCCCCCCCCCchhhHHHH-HHHHHHHHHHcCCC---------------CHhhhcccCCCcccCCHHHHHHHHHhCCcee
Q 018119          217 CLPDGISPGECSVLASADL-LGDCLMDMAKMGLL---------------SEAQVDSFNLPSYFPTPQELKALLKRNASFS  280 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~-l~~al~~mv~eG~i---------------~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~  280 (360)
                      ............. ..|.. -...+.  ......               ....+..+....++.+.+|+++++++.| |+
T Consensus       192 ~~~~~~~~~~~~~-~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aG-F~  267 (299)
T 3g2m_A          192 MSEAAESEPLERK-QELPGRSGRRYV--LHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSG-FD  267 (299)
T ss_dssp             CCHHHHSCCCCC----------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTT-CE
T ss_pred             cCccccccchhcc-ceeecCCCcEEE--EEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCC-CE
Confidence            6542210000000 00000 000000  000000               0011122344556789999999999995 99


Q ss_pred             EEEEEEec
Q 018119          281 IEKFEPLA  288 (360)
Q Consensus       281 I~~~e~~~  288 (360)
                      +..++.+.
T Consensus       268 v~~~~~~~  275 (299)
T 3g2m_A          268 VIAQTPFA  275 (299)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            99998774

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.39  E-value=2.4e-06  Score=75.59  Aligned_cols=134  Identities=19%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccc-eEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEF-QVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~-~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..+..+               +     . +++--|....-....-+..+  +--+..+   .+..--
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---------------~-----~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~---d~~~~~   90 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---------------P-----YPQKVGVEPSEAMLAVGRRRAP--EATWVRA---WGEALP   90 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---------------C-----CSEEEEECCCHHHHHHHHHHCT--TSEEECC---CTTSCC
T ss_pred             CCCeEEEECCCCCHhHHhC---------------C-----CCeEEEEeCCHHHHHHHHHhCC--CcEEEEc---ccccCC
Confidence            4569999999999877654               0     2 45555553211111111111  1112222   233334


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+++.++||+..                                      ...+|+.-++-|+|||++++..
T Consensus        91 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A           91 FPGESFDVVLLFTTLEFVED--------------------------------------VERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             SCSSCEEEEEEESCTTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEcChhhhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence            77889999999999999642                                      3346777778999999999998


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHH
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLK  274 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie  274 (360)
                      +.+..           .|...   +..+...|..       ..-...+.|.+|++++++
T Consensus       133 ~~~~~-----------~~~~~---~~~~~~~~~~-------~~~~~~~~s~~~l~~~l~  170 (211)
T 2gs9_A          133 LEALS-----------PWAAL---YRRLGEKGVL-------PWAQARFLAREDLKALLG  170 (211)
T ss_dssp             ECTTS-----------HHHHH---HHHHHHTTCT-------TGGGCCCCCHHHHHHHHC
T ss_pred             cCCcC-----------cHHHH---HHHHhhccCc-------cccccccCCHHHHHHHhc
Confidence            76542           12211   1122223321       111244679999999999

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.39  E-value=6.7e-06  Score=76.75  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCc-cceEEecCCCCCchHHHHh----hCCCCCcceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKL-EFQVFFNDLVSNDFNALYK----SLPSDRQYYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p-~~~v~~nDlp~NDFn~lF~----~l~~~~~~f~~gvpgS  130 (360)
                      ....+|+|+|||+|..+..+...               .| ..+|+-.|+... .-...+    ..+. +--|..+   .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---------------~~~~~~v~gvD~s~~-~~~~a~~~~~~~~~-~v~~~~~---d   80 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPL---------------LPEGSKYTGIDSGET-LLAEARELFRLLPY-DSEFLEG---D   80 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTT---------------SCTTCEEEEEESCHH-HHHHHHHHHHSSSS-EEEEEES---C
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---------------CCCCCEEEEEECCHH-HHHHHHHHHHhcCC-ceEEEEc---c
Confidence            45689999999999887765321               12 256777776421 111111    1111 1123333   3


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +..-.+ ++++|+|++..++||+..                                      +..+|+.-.+-|+|||+
T Consensus        81 ~~~~~~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~  121 (284)
T 3gu3_A           81 ATEIEL-NDKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGK  121 (284)
T ss_dssp             TTTCCC-SSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEE
T ss_pred             hhhcCc-CCCeeEEEECChhhcCCC--------------------------------------HHHHHHHHHHHcCCCCE
Confidence            444334 469999999999999643                                      34567777789999999


Q ss_pred             EEEEecC
Q 018119          211 MALIVPC  217 (360)
Q Consensus       211 lvl~~~g  217 (360)
                      +++.-+.
T Consensus       122 l~~~~~~  128 (284)
T 3gu3_A          122 IICFEPH  128 (284)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9988654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.38  E-value=3.1e-06  Score=80.61  Aligned_cols=175  Identities=9%  Similarity=0.113  Sum_probs=96.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCC----CccceEEecCCCCCchHHHHhhCCCC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHD----KLEFQVFFNDLVSNDFNALYKSLPSD  119 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~----~p~~~v~~nDlp~NDFn~lF~~l~~~  119 (360)
                      ...+|+|+|||+|..+..++.             ..|+..++++...+..    ...+++...|.-...|..-   |   
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~---l---  121 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS---V---  121 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH---H---
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh---h---
Confidence            457999999999987765543             4555555555433210    0013344455544333220   0   


Q ss_pred             CcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHH
Q 018119          120 RQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLL  199 (360)
Q Consensus       120 ~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~  199 (360)
                                   ...+|++++|+|+|..++||+-..+                                   |...+|+
T Consensus       122 -------------~~~~~~~~FD~V~~~~~lhy~~~~~-----------------------------------~~~~~l~  153 (302)
T 2vdw_A          122 -------------REVFYFGKFNIIDWQFAIHYSFHPR-----------------------------------HYATVMN  153 (302)
T ss_dssp             -------------HTTCCSSCEEEEEEESCGGGTCSTT-----------------------------------THHHHHH
T ss_pred             -------------hccccCCCeeEEEECchHHHhCCHH-----------------------------------HHHHHHH
Confidence                         0125778999999999999964321                                   1346889


Q ss_pred             HHHHHhccCCeEEEEecCCCCCCCCCCC-chhhHHHHHHHHHHHHHHcCCCCHh-------hhcccCCCcccCCHHHHHH
Q 018119          200 ARAQELASGGLMALIVPCLPDGISPGEC-SVLASADLLGDCLMDMAKMGLLSEA-------QVDSFNLPSYFPTPQELKA  271 (360)
Q Consensus       200 ~Ra~EL~pGG~lvl~~~g~~~~~~~~~~-~~~~~~~~l~~al~~mv~eG~i~~e-------~~d~f~~P~y~ps~eE~~~  271 (360)
                      .-++-|+|||+|++..+.+..-...... .....-+.+  .+........++.+       +...-..|.|+-+.+|+.+
T Consensus       154 ~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~  231 (302)
T 2vdw_A          154 NLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLP--SSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVR  231 (302)
T ss_dssp             HHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSC--TTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHH
T ss_pred             HHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccc--cccceeeeccccccccceeeccccCCCceeeeeEHHHHHH
Confidence            9999999999999998753321000000 000000000  00000000000000       0012345678888999999


Q ss_pred             HHHhCCceeEEEEEEec
Q 018119          272 LLKRNASFSIEKFEPLA  288 (360)
Q Consensus       272 ~ie~~g~F~I~~~e~~~  288 (360)
                      ++++.| |++.....+.
T Consensus       232 l~~~~G-l~lv~~~~f~  247 (302)
T 2vdw_A          232 VFNEYG-FVLVDNVDFA  247 (302)
T ss_dssp             HHHHTT-EEEEEEEEHH
T ss_pred             HHHHCC-CEEEEecChH
Confidence            999995 9998887763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=2.1e-06  Score=77.88  Aligned_cols=149  Identities=14%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHH------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      ...+|+|+|||+|.++..+...            .++..+++.     ....+.+...|+..-++..-|.          
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~~----------  120 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN-----TAANISYRLLDGLVPEQAAQIH----------  120 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS-----CCTTEEEEECCTTCHHHHHHHH----------
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-----cccCceEEECcccccccccccc----------
Confidence            3568999999999999888762            222222222     1123555555554322221111          


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                                  +..++|+++++.++||+..                                    .|...+|+.-.+-
T Consensus       121 ------------~~~~~d~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~  152 (245)
T 3ggd_A          121 ------------SEIGDANIYMRTGFHHIPV------------------------------------EKRELLGQSLRIL  152 (245)
T ss_dssp             ------------HHHCSCEEEEESSSTTSCG------------------------------------GGHHHHHHHHHHH
T ss_pred             ------------cccCccEEEEcchhhcCCH------------------------------------HHHHHHHHHHHHH
Confidence                        0124899999999999642                                    1355678888899


Q ss_pred             hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHh---hhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119          205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEA---QVDSFNLPSYFPTPQELKALLKRNASFSI  281 (360)
Q Consensus       205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e---~~d~f~~P~y~ps~eE~~~~ie~~g~F~I  281 (360)
                      |+|||++++.-.+..+.         .++..+...      .+-....   .+..-..|. ..+.+|+.+.+  . +|++
T Consensus       153 LkpgG~l~i~~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a-Gf~~  213 (245)
T 3ggd_A          153 LGKQGAMYLIELGTGCI---------DFFNSLLEK------YGQLPYELLLVMEHGIRPG-IFTAEDIELYF--P-DFEI  213 (245)
T ss_dssp             HTTTCEEEEEEECTTHH---------HHHHHHHHH------HSSCCHHHHHHHTTTCCCC-CCCHHHHHHHC--T-TEEE
T ss_pred             cCCCCEEEEEeCCcccc---------HHHHHHHhC------CCCCchhhhhccccCCCCC-ccCHHHHHHHh--C-CCEE
Confidence            99999988876554421         111111111      0111111   011112233 35899999998  5 5999


Q ss_pred             EEEEEe
Q 018119          282 EKFEPL  287 (360)
Q Consensus       282 ~~~e~~  287 (360)
                      ..-...
T Consensus       214 ~~~~~~  219 (245)
T 3ggd_A          214 LSQGEG  219 (245)
T ss_dssp             EEEECC
T ss_pred             Eecccc
Confidence            877654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.35  E-value=6.4e-06  Score=79.89  Aligned_cols=154  Identities=15%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ..-+|+|+|||+|..++.+.+        +       .|...+..-|+|.  --...+. +.....==+.-++|+|+...
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~--------~-------~p~~~~~~~dlp~--v~~~a~~~~~~~~~~rv~~~~gD~~~~~  241 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMS--------L-------YPGCKITVFDIPE--VVWTAKQHFSFQEEEQIDFQEGDFFKDP  241 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHH--------H-------CSSCEEEEEECHH--HHHHHHHHSCC--CCSEEEEESCTTTSC
T ss_pred             cCCeEEeeCCCCCHHHHHHHH--------h-------CCCceeEeccCHH--HHHHHHHhhhhcccCceeeecCccccCC
Confidence            345899999999986655432        2       3678888999984  2222222 22111111344678899876


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|  ..|+++....||-.+.                                    .+-..+|+.-++-|+|||++++.=
T Consensus       242 ~~--~~D~~~~~~vlh~~~d------------------------------------~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          242 LP--EADLYILARVLHDWAD------------------------------------GKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             CC--CCSEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CC--CceEEEeeeecccCCH------------------------------------HHHHHHHHHHHhhCCCCCEEEEEE
Confidence            66  4699999999994222                                    123457888889999999998874


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      .-.++...      +..+..+.+ +.-|+.-|             --.||.+|+++++++.| |++.++..
T Consensus       284 ~~~~~~~~------~~~~~~~~d-l~ml~~~~-------------g~ert~~e~~~ll~~AG-f~~v~v~~  333 (353)
T 4a6d_A          284 SLLDEDRR------GPLLTQLYS-LNMLVQTE-------------GQERTPTHYHMLLSSAG-FRDFQFKK  333 (353)
T ss_dssp             CCCCTTSC------CCHHHHHHH-HHHHHSSS-------------CCCCCHHHHHHHHHHHT-CEEEEEEC
T ss_pred             eeeCCCCC------CCHHHHHHH-HHHHHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEE
Confidence            33322111      011111111 11122211             11479999999999996 99877653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.34  E-value=1.6e-06  Score=84.34  Aligned_cols=158  Identities=18%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCC-cceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDR-QYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~-~~f~~gvpgSFy~r  134 (360)
                      +.-+|+|+|||+|..+..+.+.               .|..++..-|+|.  .-...+. +.... .-=+.-+.|.|+..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~  241 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQY---------------NKEVEVTIVDLPQ--QLEMMRKQTAGLSGSERIHGHGANLLDR  241 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHH---------------STTCEEEEEECHH--HHHHHHHHHTTCTTGGGEEEEECCCCSS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHh---------------CCCCEEEEEeCHH--HHHHHHHHHHhcCcccceEEEEcccccc
Confidence            4579999999999987766432               1557888889852  2222222 11110 00133345667765


Q ss_pred             --cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          135 --LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       135 --lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                        -+| +++|+++++.+||.++.                                    .|...+|+.-++-|+|||+++
T Consensus       242 ~~~~p-~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~  284 (363)
T 3dp7_A          242 DVPFP-TGFDAVWMSQFLDCFSE------------------------------------EEVISILTRVAQSIGKDSKVY  284 (363)
T ss_dssp             SCCCC-CCCSEEEEESCSTTSCH------------------------------------HHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCCC-CCcCEEEEechhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence              367 89999999999985332                                    134567888889999999998


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      +.-...++...     ....+... ....+|...          .......++.+|+++++++.| |++.++.
T Consensus       285 i~e~~~~~~~~-----~~~~~~~~-~~~~~~~~~----------~~~~~~~~t~~e~~~ll~~AG-f~~v~~~  340 (363)
T 3dp7_A          285 IMETLWDRQRY-----ETASYCLT-QISLYFTAM----------ANGNSKMFHSDDLIRCIENAG-LEVEEIQ  340 (363)
T ss_dssp             EEECCTTSCSS-----HHHHHHHH-HHHHHHHHS----------SCSSCCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred             EEeeccCCccc-----cchhhHHH-HhhhhHHhh----------hCCCCcccCHHHHHHHHHHcC-CeEEEEE
Confidence            87543332211     11111111 111122110          011123569999999999995 9887664

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.33  E-value=1.2e-05  Score=78.22  Aligned_cols=153  Identities=17%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ++..+|+|+|||+|..+..+...               .|..+++.-|+|  +.-...+.+   ..  +.-+.|.|+. -
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~---------------~~~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~-~  264 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISK---------------YPLIKGINFDLP--QVIENAPPL---SG--IEHVGGDMFA-S  264 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECH--HHHTTCCCC---TT--EEEEECCTTT-C
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH---------------CCCCeEEEeChH--HHHHhhhhc---CC--CEEEeCCccc-C
Confidence            34679999999999887766321               145777777874  222222222   12  3445567877 5


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|.  +|+++++.+||+++.                                    .+...+|+.-++-|+|||++++.-
T Consensus       265 ~~~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          265 VPQ--GDAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             CCC--EEEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC--CCEEEEecccccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            775  999999999997433                                    123457888889999999999884


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ...++....   .....+....+.+ -|+..|-             ..++.+|+++++++.| |++.++...
T Consensus       307 ~~~~~~~~~---~~~~~~~~~~d~~-~~~~~~~-------------~~~t~~e~~~ll~~aG-f~~~~~~~~  360 (372)
T 1fp1_D          307 FILPEEPNT---SEESKLVSTLDNL-MFITVGG-------------RERTEKQYEKLSKLSG-FSKFQVACR  360 (372)
T ss_dssp             EEECSSCCS---SHHHHHHHHHHHH-HHHHHSC-------------CCEEHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             eccCCCCcc---chHHHHHHHhhHH-HHhccCC-------------ccCCHHHHHHHHHHCC-CceEEEEEc
Confidence            433322110   0000001111111 1111111             1458999999999995 988776653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.33  E-value=4.2e-06  Score=72.17  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+||+...  +-+-..+++..+++..      ..+++..-|...-+                      |  .-+
T Consensus        12 ~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~------~~~~~~~~d~~~~~----------------------~--~~~   59 (176)
T 2ld4_A           12 AGQFVAVVWDKSSP--VEALKGLVDKLQALTG------NEGRVSVENIKQLL----------------------Q--SAH   59 (176)
T ss_dssp             TTSEEEEEECTTSC--HHHHHHHHHHHHHHTT------TTSEEEEEEGGGGG----------------------G--GCC
T ss_pred             CCCEEEEecCCcee--eeCCHHHHHHHHHhcc------cCcEEEEechhcCc----------------------c--ccC
Confidence            35789999998743  6666666666665532      12555555542100                      0  114


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++++|+|+|+.++||+..                                     |+..+|+.-++-|+|||++++.-+
T Consensus        60 ~~~~fD~V~~~~~l~~~~~-------------------------------------~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           60 KESSFDIILSGLVPGSTTL-------------------------------------HSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CSSCEEEEEECCSTTCCCC-------------------------------------CCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEeEEEECChhhhccc-------------------------------------CHHHHHHHHHHHCCCCEEEEEEcc
Confidence            7789999999999999721                                     123467777799999999999532


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      ....                         .+           -+.|.++.+|+.+.+++.| | |+
T Consensus       103 ~~~~-------------------------~~-----------~~~~~~~~~~~~~~l~~aG-f-i~  130 (176)
T 2ld4_A          103 VETA-------------------------VD-----------NNSKVKTASKLCSALTLSG-L-VE  130 (176)
T ss_dssp             EESS-------------------------SC-----------SSSSSCCHHHHHHHHHHTT-C-EE
T ss_pred             cccc-------------------------cc-----------cccccCCHHHHHHHHHHCC-C-cE
Confidence            1100                         00           0566788999999999986 8 76

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.31  E-value=2.6e-06  Score=73.53  Aligned_cols=128  Identities=14%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+...                 ..+++-.|....-....-+.++  +--+..   +.+..-.+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~~~~~~~~a~~~~~--~~~~~~---~d~~~~~~  103 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ-----------------GHDVLGTDLDPILIDYAKQDFP--EARWVV---GDLSVDQI  103 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHCT--TSEEEE---CCTTTSCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-----------------CCcEEEEcCCHHHHHHHHHhCC--CCcEEE---cccccCCC
Confidence            3469999999999988766432                 1244555543211111111121  111222   22333346


Q ss_pred             CCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |++++|+++++ ..+|+++.                                    .+...+|+.-.+-|+|||++++.+
T Consensus       104 ~~~~~D~i~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          104 SETDFDLIVSAGNVMGFLAE------------------------------------DGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             CCCCEEEEEECCCCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceeEEEECCcHHhhcCh------------------------------------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence            77899999998 77887432                                    134567888889999999999986


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ....                                           ..+.+++...++..| |++.....
T Consensus       148 ~~~~-------------------------------------------~~~~~~~~~~l~~~G-f~~~~~~~  174 (195)
T 3cgg_A          148 GAGR-------------------------------------------GWVFGDFLEVAERVG-LELENAFE  174 (195)
T ss_dssp             ETTS-------------------------------------------SCCHHHHHHHHHHHT-EEEEEEES
T ss_pred             CCCC-------------------------------------------CcCHHHHHHHHHHcC-CEEeeeec
Confidence            3321                                           146888899998885 98877753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.29  E-value=4.7e-06  Score=77.50  Aligned_cols=137  Identities=16%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC--CcceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD--RQYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~--~~~f~~gvpgSFy~r  134 (360)
                      ...+|+|+|||+|.++..+...                 ..+|+-.|....=....=+.+...  +--|..   +.+..-
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-----------------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~  179 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-----------------GYDVTSWDHNENSIAFLNETKEKENLNISTAL---YDINAA  179 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE---CCGGGC
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-----------------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEE---eccccc
Confidence            3578999999999998877542                 023444444211111000000000  111111   223322


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+ .+++|+|+++.++||++.                                    .++..+|+.-.+-|+|||++++.
T Consensus       180 ~~-~~~fD~i~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          180 NI-QENYDFIVSTVVFMFLNR------------------------------------ERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             CC-CSCEEEEEECSSGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-cCCccEEEEccchhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            22 689999999999999743                                    13556888888999999998887


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      .....+..+.                                -..+.+..+.+|+++.++.   |++...+
T Consensus       223 ~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~~~---~~~~~~~  258 (286)
T 3m70_A          223 AAMSTDDVPC--------------------------------PLPFSFTFAENELKEYYKD---WEFLEYN  258 (286)
T ss_dssp             EEBCCSSSCC--------------------------------SSCCSCCBCTTHHHHHTTT---SEEEEEE
T ss_pred             EecCCCCCCC--------------------------------CCCccccCCHHHHHHHhcC---CEEEEEE
Confidence            5433321110                                0123456778899888753   8887775

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.29  E-value=1e-05  Score=76.51  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHh
Q 018119          196 SFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKR  275 (360)
Q Consensus       196 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~  275 (360)
                      ..|+.-.+-|+|||+|++...+.+.. +       ...+.+.+.   +...|           .|+.++|.+|+.+.+. 
T Consensus       181 ~~l~~l~~~L~PGG~Lvls~~~~d~~-p-------~~~~~~~~~---~~~~g-----------~p~~~rs~~ei~~~f~-  237 (277)
T 3giw_A          181 GIVRRLLEPLPSGSYLAMSIGTAEFA-P-------QEVGRVARE---YAARN-----------MPMRLRTHAEAEEFFE-  237 (277)
T ss_dssp             HHHHHHHTTSCTTCEEEEEEECCTTS-H-------HHHHHHHHH---HHHTT-----------CCCCCCCHHHHHHTTT-
T ss_pred             HHHHHHHHhCCCCcEEEEEeccCCCC-H-------HHHHHHHHH---HHhcC-----------CCCccCCHHHHHHHhC-
Confidence            35566668899999999998776521 1       011222222   22222           3788999999999984 


Q ss_pred             CCceeEEE
Q 018119          276 NASFSIEK  283 (360)
Q Consensus       276 ~g~F~I~~  283 (360)
                        +|++..
T Consensus       238 --Glelve  243 (277)
T 3giw_A          238 --GLELVE  243 (277)
T ss_dssp             --TSEECT
T ss_pred             --CCcccC
Confidence              588643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.27  E-value=3.1e-06  Score=75.36  Aligned_cols=104  Identities=12%  Similarity=0.012  Sum_probs=61.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC--------CcceEeecCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD--------RQYYAAGVPG  129 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~--------~~~f~~gvpg  129 (360)
                      ..+|+|+|||+|..+..+.+.               .+..+|+--|....-....-+.+...        +--|..+   
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---   91 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKD---------------SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG---   91 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHC---------------TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC---
T ss_pred             CCEEEEeCCCCCHHHHHHHhh---------------CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC---
Confidence            469999999999988876541               12234555555321111111111110        1112222   


Q ss_pred             ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          130 SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      .+...-++.+++|+|+++.++||+..                                    .++..+|+.-++-|+|||
T Consensus        92 d~~~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG  135 (217)
T 3jwh_A           92 ALTYQDKRFHGYDAATVIEVIEHLDL------------------------------------SRLGAFERVLFEFAQPKI  135 (217)
T ss_dssp             CTTSCCGGGCSCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSE
T ss_pred             CcccccccCCCcCEEeeHHHHHcCCH------------------------------------HHHHHHHHHHHHHcCCCE
Confidence            22233345579999999999999632                                    135668888889999999


Q ss_pred             eEEEEe
Q 018119          210 LMALIV  215 (360)
Q Consensus       210 ~lvl~~  215 (360)
                      .++++.
T Consensus       136 ~li~~~  141 (217)
T 3jwh_A          136 VIVTTP  141 (217)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            776653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.25  E-value=2e-06  Score=76.41  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=76.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+.                    .+|+--|+...            +.-|..+   .+..--+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~------------~~~~~~~---d~~~~~~  111 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASL------------DPRVTVC---DMAQVPL  111 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCS------------STTEEES---CTTSCSC
T ss_pred             CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCC------------CceEEEe---ccccCCC
Confidence            34689999999999776551                    23455555443            1112222   2333347


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++++|+|+++.++|| .                                      |...+|+.-++-|+|||++++...
T Consensus       112 ~~~~fD~v~~~~~l~~-~--------------------------------------~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          112 EDESVDVAVFCLSLMG-T--------------------------------------NIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             CTTCEEEEEEESCCCS-S--------------------------------------CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCEeEEEEehhccc-c--------------------------------------CHHHHHHHHHHhCCCCeEEEEEEc
Confidence            7899999999999996 1                                      134467777788999999998742


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      ..                                           .+++.+++.++++..| |++.....
T Consensus       153 ~~-------------------------------------------~~~~~~~~~~~l~~~G-f~~~~~~~  178 (215)
T 2zfu_A          153 SS-------------------------------------------RFEDVRTFLRAVTKLG-FKIVSKDL  178 (215)
T ss_dssp             GG-------------------------------------------GCSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred             CC-------------------------------------------CCCCHHHHHHHHHHCC-CEEEEEec
Confidence            21                                           0238899999999985 98877653

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.23  E-value=1e-06  Score=80.35  Aligned_cols=85  Identities=14%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      +++|+|+|+.+||++..-   +                               .|...+|+.-++-|+|||+|++.....
T Consensus       156 ~~fD~v~~~~~l~~~~~~---~-------------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~  201 (265)
T 2i62_A          156 PPADCLLSTLCLDAACPD---L-------------------------------PAYRTALRNLGSLLKPGGFLVMVDALK  201 (265)
T ss_dssp             CCEEEEEEESCHHHHCSS---H-------------------------------HHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             CCccEEEEhhhhhhhcCC---h-------------------------------HHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence            899999999999975431   1                               245667888889999999999987322


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .+.           +           ..|        ....+.+..+.+++.+++++.| |++..++...
T Consensus       202 ~~~-----------~-----------~~~--------~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  240 (265)
T 2i62_A          202 SSY-----------Y-----------MIG--------EQKFSSLPLGWETVRDAVEEAG-YTIEQFEVIS  240 (265)
T ss_dssp             CCE-----------E-----------EET--------TEEEECCCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred             Cce-----------E-----------EcC--------CccccccccCHHHHHHHHHHCC-CEEEEEEEec
Confidence            210           0           011        1122345568999999999995 9999888764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.23  E-value=3.6e-05  Score=74.36  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=89.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|..++.+...               .|..+++.-|+|  +.-...+.    ..-..+  +.-+.+.+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~---------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~--v~~~~~d~  241 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALR---------------APHLRGTLVELA--GPAERARRRFADAGLADR--VTVAEGDF  241 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECH--HHHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHH---------------CCCCEEEEEeCH--HHHHHHHHHHHhcCCCCc--eEEEeCCC
Confidence            34679999999999766655332               145778888873  23222221    111111  22233456


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      .. -+|.+ +|+++++.++|+++.                                    .+...+|+.-.+-|+|||++
T Consensus       242 ~~-~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  283 (374)
T 1qzz_A          242 FK-PLPVT-ADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRL  283 (374)
T ss_dssp             TS-CCSCC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             CC-cCCCC-CCEEEEeccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            65 45654 999999999987432                                    12345777778999999999


Q ss_pred             EEEec--CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVP--CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~--g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++.-.  ..++..       ...+..+.+.+. ++..|             ...++.+|+++++++.| |++.++...
T Consensus       284 ~i~e~~~~~~~~~-------~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~ll~~aG-f~~~~~~~~  339 (374)
T 1qzz_A          284 LVLDRADVEGDGA-------DRFFSTLLDLRM-LTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTS  339 (374)
T ss_dssp             EEEECCH--------------HHHHHHHHHHH-HHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEE
T ss_pred             EEEechhhcCCCC-------CcchhhhcchHH-HHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEEC
Confidence            98765  332210       011121111111 11112             13579999999999995 998887765

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.23  E-value=2.6e-05  Score=74.21  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=91.4

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC---CCcceEeecCCccccc
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS---DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~---~~~~f~~gvpgSFy~r  134 (360)
                      .+|+|+|||+|..+..+..        +       .|..+++.-|+|.  .-...+. +..   ..+  +.-+.|.|.. 
T Consensus       169 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~--v~~~~~d~~~-  228 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQ--------A-------EPSARGVMLDREG--SLGVARDNLSSLLAGER--VSLVGGDMLQ-  228 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEECTT--CTHHHHHHTHHHHHTTS--EEEEESCTTT-
T ss_pred             CEEEEeCCCchHHHHHHHH--------H-------CCCCEEEEeCcHH--HHHHHHHHHhhcCCCCc--EEEecCCCCC-
Confidence            8999999999977665542        1       1457888999842  2222221 211   011  2334556777 


Q ss_pred             cCCCCceeEEEeccccc-ccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCSYGLQ-WLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alH-WLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -+| +++|++++..++| | +.                                    .+...+|+.-++-|+|||++++
T Consensus       229 ~~~-~~~D~v~~~~vl~~~-~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i  270 (334)
T 2ip2_A          229 EVP-SNGDIYLLSRIIGDL-DE------------------------------------AASLRLLGNCREAMAGDGRVVV  270 (334)
T ss_dssp             CCC-SSCSEEEEESCGGGC-CH------------------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCC-CCCCEEEEchhccCC-CH------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence            467 6899999999998 5 11                                    1234577888899999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .-...++...   ......++    . .-|...+             -..++.+|+++++++.| |++.++...
T Consensus       271 ~e~~~~~~~~---~~~~~~~~----~-~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~  322 (334)
T 2ip2_A          271 IERTISASEP---SPMSVLWD----V-HLFMACA-------------GRHRTTEEVVDLLGRGG-FAVERIVDL  322 (334)
T ss_dssp             EECCBCSSSC---CHHHHHHH----H-HHHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             EEeccCCCCC---cchhHHhh----h-HhHhhCC-------------CcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence            8654443211   01111112    1 1111111             12468999999999996 998777644

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.23  E-value=4.2e-06  Score=73.60  Aligned_cols=109  Identities=10%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC--CCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP--SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~--~~~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|..++..+..                +..+|+--|....-. ...+. +.  ..+--+..+   .+..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~----------------~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~---d~~~   82 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE----------------DGYKTYGIEISDLQL-KKAENFSRENNFKLNISKG---DIRK   82 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH----------------TTCEEEEEECCHHHH-HHHHHHHHHHTCCCCEEEC---CTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHh----------------CCCEEEEEECCHHHH-HHHHHHHHhcCCceEEEEC---chhh
Confidence            3579999999999987655421                113444444422111 11110 00  001112222   2222


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --+|++++|+|+++.++|+++.                                    .|...+|+.-++-|+|||++++
T Consensus        83 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~  126 (209)
T 2p8j_A           83 LPFKDESMSFVYSYGTIFHMRK------------------------------------NDVKEAIDEIKRVLKPGGLACI  126 (209)
T ss_dssp             CCSCTTCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCceeEEEEcChHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            2367889999999999998531                                    1456678888899999999999


Q ss_pred             EecCCCCC
Q 018119          214 IVPCLPDG  221 (360)
Q Consensus       214 ~~~g~~~~  221 (360)
                      ......+.
T Consensus       127 ~~~~~~~~  134 (209)
T 2p8j_A          127 NFLTTKDE  134 (209)
T ss_dssp             EEEETTST
T ss_pred             EEecccch
Confidence            98876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.21  E-value=7.2e-06  Score=71.95  Aligned_cols=142  Identities=14%  Similarity=0.029  Sum_probs=84.1

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCC
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKA  139 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~  139 (360)
                      +|+|+|||+|..+..+.+.                 ..+|+--|....-....-+.+.... .-+.-+.+.+..--+|++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~   93 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL-----------------GYEVTAVDQSSVGLAKAKQLAQEKG-VKITTVQSNLADFDIVAD   93 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT-----------------TCEEEEECSSHHHHHHHHHHHHHHT-CCEEEECCBTTTBSCCTT
T ss_pred             CEEEECCCCCHhHHHHHhC-----------------CCeEEEEECCHHHHHHHHHHHHhcC-CceEEEEcChhhcCCCcC
Confidence            9999999999988766431                 1244444543111111000000000 001111223333346788


Q ss_pred             ceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119          140 SINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       140 S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      ++|+|+++. .||    +                                 ..|...+|+.-.+-|+|||++++......
T Consensus        94 ~fD~v~~~~-~~~----~---------------------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           94 AWEGIVSIF-CHL----P---------------------------------SSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             TCSEEEEEC-CCC----C---------------------------------HHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             CccEEEEEh-hcC----C---------------------------------HHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            999999854 454    1                                 02455678888889999999999987654


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          220 DGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      +..          +           ..|        ...-+.++.+.+|++++++   +|+|..++....
T Consensus       136 ~~~----------~-----------~~~--------~~~~~~~~~~~~~l~~~l~---Gf~v~~~~~~~~  173 (202)
T 2kw5_A          136 QLQ----------Y-----------NTG--------GPKDLDLLPKLETLQSELP---SLNWLIANNLER  173 (202)
T ss_dssp             TGG----------G-----------TSC--------CSSSGGGCCCHHHHHHHCS---SSCEEEEEEEEE
T ss_pred             ccc----------C-----------CCC--------CCCcceeecCHHHHHHHhc---CceEEEEEEEEe
Confidence            320          0           011        1123577899999999998   499999887643

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.20  E-value=4.7e-06  Score=77.56  Aligned_cols=108  Identities=13%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCC----CcceEeecC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSD----RQYYAAGVP  128 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~----~~~f~~gvp  128 (360)
                      ...+|+|+|||+|..++.+...                 ..+|+-.|+... .-...+. .   ...    +-.+..+  
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~~~--  116 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE-----------------GFSVTSVDASDK-MLKYALKERWNRRKEPAFDKWVIEEA--  116 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT-----------------TCEEEEEESCHH-HHHHHHHHHHHTTTSHHHHTCEEEEC--
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-----------------CCeEEEEECCHH-HHHHHHHhhhhcccccccceeeEeec--
Confidence            3579999999999988776431                 125555555321 1111111 0   000    0112222  


Q ss_pred             Ccccc---ccCCCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          129 GSFHN---RLFPKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       129 gSFy~---rlfP~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                       .+..   .++|++++|+|+|+ .++||+......                               ..++..+|+.-++-
T Consensus       117 -d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~  164 (293)
T 3thr_A          117 -NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD-------------------------------QSEHRLALKNIASM  164 (293)
T ss_dssp             -CGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS-------------------------------SHHHHHHHHHHHHT
T ss_pred             -ChhhCccccccCCCeEEEEEcChHHhhcCccccC-------------------------------HHHHHHHHHHHHHH
Confidence             2333   23788999999999 899997653211                               12467788889999


Q ss_pred             hccCCeEEEEec
Q 018119          205 LASGGLMALIVP  216 (360)
Q Consensus       205 L~pGG~lvl~~~  216 (360)
                      |+|||+|++...
T Consensus       165 LkpgG~l~~~~~  176 (293)
T 3thr_A          165 VRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCeEEEEEeC
Confidence            999999999875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.18  E-value=1.2e-05  Score=77.61  Aligned_cols=151  Identities=17%  Similarity=0.085  Sum_probs=91.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      ..+|+|+|||+|..+..+...               .|..+++.-|+|  ..-...+.+   ..  +.-+.|.|+. -+|
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~-~~~  250 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEI---------------FPHLKCTVFDQP--QVVGNLTGN---EN--LNFVGGDMFK-SIP  250 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHH---------------CTTSEEEEEECH--HHHSSCCCC---SS--EEEEECCTTT-CCC
T ss_pred             CCEEEEECCCcCHHHHHHHHH---------------CCCCeEEEeccH--HHHhhcccC---CC--cEEEeCccCC-CCC
Confidence            469999999999887766332               144677777875  222222221   22  4445677887 567


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhcc---CCeEEEE
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELAS---GGLMALI  214 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p---GG~lvl~  214 (360)
                        ++|+++++.+||+++.                                    .+...+|+.-++-|+|   ||++++.
T Consensus       251 --~~D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          251 --SADAVLLKWVLHDWND------------------------------------EQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             --CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             --CceEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence              4999999999997433                                    1234578888899999   9999887


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      -...++...   ......+..+.+.. -|+..|-             ..++.+|+++++++.| |++.++...
T Consensus       293 e~~~~~~~~---~~~~~~~~~~~d~~-~~~~~~g-------------~~~t~~e~~~ll~~aG-f~~~~~~~~  347 (358)
T 1zg3_A          293 DISIDETSD---DRGLTELQLDYDLV-MLTMFLG-------------KERTKQEWEKLIYDAG-FSSYKITPI  347 (358)
T ss_dssp             ECEECTTCS---CHHHHHHHHHHHHH-HHHHHSC-------------CCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             EeccCCCCc---cchhhhHHHhhCHH-HhccCCC-------------CCCCHHHHHHHHHHcC-CCeeEEEec
Confidence            543332211   00000011111111 1111111             1569999999999995 988776543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.18  E-value=5.1e-06  Score=73.99  Aligned_cols=104  Identities=14%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC--------CcceEeecCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD--------RQYYAAGVPG  129 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~--------~~~f~~gvpg  129 (360)
                      ..+|+|+|||+|..+..+...               .|..+|+--|....-....-+.+...        +--|..+   
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---   91 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKD---------------KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS---   91 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTS---------------TTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC---
T ss_pred             CCEEEEecCCCCHHHHHHHhc---------------CCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC---
Confidence            469999999999988776431               12245555555321111111111100        1112222   


Q ss_pred             ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          130 SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                      .+....++.+++|+|+++.++||+..                                    .++..+|+.-++-|+|||
T Consensus        92 d~~~~~~~~~~fD~V~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG  135 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVIEVIEHLDE------------------------------------NRLQAFEKVLFEFTRPQT  135 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSE
T ss_pred             cccccccccCCCCEEEEHHHHHhCCH------------------------------------HHHHHHHHHHHHhhCCCE
Confidence            23334456689999999999999632                                    135568888889999999


Q ss_pred             eEEEEe
Q 018119          210 LMALIV  215 (360)
Q Consensus       210 ~lvl~~  215 (360)
                      .++.+.
T Consensus       136 ~~i~~~  141 (219)
T 3jwg_A          136 VIVSTP  141 (219)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            666554

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.15  E-value=6.9e-06  Score=77.33  Aligned_cols=48  Identities=15%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ++.+++|+|+|..++||+.-                                ..-..++..+|+.-++-|+|||+|++..
T Consensus       173 ~~~~~fD~I~~~~vl~~ihl--------------------------------~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          173 AQTPEYDVVLCLSLTKWVHL--------------------------------NWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             TCCCCEEEEEEESCHHHHHH--------------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCcCEEEEChHHHHhhh--------------------------------cCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            56789999999999999420                                0112357778999999999999999974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.11  E-value=1.6e-05  Score=70.84  Aligned_cols=165  Identities=10%  Similarity=0.056  Sum_probs=85.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC---CCCCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL---PSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..++.+...               .|..+|+--|.-..=....-+.+   .-.+--|..+.... ...
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~---------------~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~  105 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQ---------------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTD  105 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGG
T ss_pred             CCeEEEEccCcCHHHHHHHHH---------------CCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHh
Confidence            568999999999988876542               12345555554321111111110   00111233332222 223


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+|++++|++++++..+|........           +                   -+...||+.-++-|+|||.+++.
T Consensus       106 ~~~~~~~D~i~~~~~~~~~~~~~~~~-----------~-------------------~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          106 YFEDGEIDRLYLNFSDPWPKKRHEKR-----------R-------------------LTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             TSCTTCCSEEEEESCCCCCSGGGGGG-----------S-------------------TTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             hcCCCCCCEEEEECCCCccccchhhh-----------c-------------------cCCHHHHHHHHHHcCCCcEEEEE
Confidence            47888999999998877744210000           0                   02345777778889999999886


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhh-cccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQV-DSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~-d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      ...               .+....++..|.+.|.-..+.. |-+.-+.......+++......| +.|-++
T Consensus       156 ~~~---------------~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~t~~e~~~~~~g-~~i~~~  210 (214)
T 1yzh_A          156 TDN---------------RGLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKG-QVIYRV  210 (214)
T ss_dssp             ESC---------------HHHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHHHHTGGGC-CCCEEE
T ss_pred             eCC---------------HHHHHHHHHHHHHCCCeeeeccccccccCCCCCCCcHHHHHHHHCC-CCeEEE
Confidence            411               0223344445555674321111 22222233334457777777665 555544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.10  E-value=6.8e-06  Score=73.10  Aligned_cols=102  Identities=13%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..+..+...               .+  +++..|+.. +.-...+.    .. .+--|..+   .+..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~---------------~~--~v~~vD~s~-~~~~~a~~~~~~~~-~~~~~~~~---d~~~   96 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDY---------------GF--EVVGVDISE-DMIRKAREYAKSRE-SNVEFIVG---DARK   96 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT---------------TC--EEEEEESCH-HHHHHHHHHHHHTT-CCCEEEEC---CTTS
T ss_pred             CCeEEEEeccCCHHHHHHHHc---------------CC--EEEEEECCH-HHHHHHHHHHHhcC-CCceEEEC---chhc
Confidence            579999999999887665431               01  344444421 11111110    11 11112222   2333


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --+|++++|+|+++.++|+...                                    .|...+|+.-++-|+|||++++
T Consensus        97 ~~~~~~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~  140 (227)
T 1ve3_A           97 LSFEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIM  140 (227)
T ss_dssp             CCSCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCcEEEEEEcCchHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            3367789999999999554211                                    1355678888899999999999


Q ss_pred             EecC
Q 018119          214 IVPC  217 (360)
Q Consensus       214 ~~~g  217 (360)
                      ....
T Consensus       141 ~~~~  144 (227)
T 1ve3_A          141 YFTD  144 (227)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.09  E-value=9.7e-05  Score=71.09  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      +..+|+|+|||+|..+..+.+        +       .|..++..-|+|  +.   .........  +.-+.|.|+. -+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~--~~---~~~a~~~~~--v~~~~~d~~~-~~  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICE--------T-------FPKLKCIVFDRP--QV---VENLSGSNN--LTYVGGDMFT-SI  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECH--HH---HTTCCCBTT--EEEEECCTTT-CC
T ss_pred             cCceEEEeCCCccHHHHHHHH--------H-------CCCCeEEEeeCH--HH---HhhcccCCC--cEEEeccccC-CC
Confidence            457999999999977665532        1       145778888885  22   222211112  3445567877 56


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhcc---CCeEEE
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELAS---GGLMAL  213 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p---GG~lvl  213 (360)
                      |+  +|+++++.+||.++.                                    .+...+|+.-++-|+|   ||++++
T Consensus       245 p~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~i  286 (352)
T 1fp2_A          245 PN--ADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGKVTI  286 (352)
T ss_dssp             CC--CSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             CC--ccEEEeehhhccCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            73  999999999995332                                    1233578888899999   999988


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      .-...++...    .. .. .. ...+.++....         +  +-..++.+|+++++++.| |++.++..
T Consensus       287 ~e~~~~~~~~----~~-~~-~~-~~~~~d~~~~~---------~--~g~~~t~~e~~~ll~~aG-f~~~~~~~  340 (352)
T 1fp2_A          287 IDMVIDKKKD----EN-QV-TQ-IKLLMDVNMAC---------L--NGKERNEEEWKKLFIEAG-FQHYKISP  340 (352)
T ss_dssp             EECEECTTTS----CH-HH-HH-HHHHHHHHGGG---------G--TCCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred             EEeecCCCCC----cc-ch-hh-hHhhccHHHHh---------c--cCCCCCHHHHHHHHHHCC-CCeeEEEe
Confidence            8554433211    00 00 01 11122221100         0  122468999999999996 98776654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.08  E-value=1.8e-05  Score=76.14  Aligned_cols=154  Identities=15%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      .+..+|+|+|||+|..+..+...               .|..+++.-|+|  +.-...+.    ..-..+  +.-+.+.+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~---------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~--v~~~~~d~  242 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARR---------------APHVSATVLEMA--GTVDTARSYLKDEGLSDR--VDVVEGDF  242 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECT--THHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHh---------------CCCCEEEEecCH--HHHHHHHHHHHhcCCCCc--eEEEeCCC
Confidence            34579999999999887766432               145778888883  23222221    111111  12233456


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      .. -+|.+ +|+++++.++|.++.                                    .+...+|+.-++-|+|||++
T Consensus       243 ~~-~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  284 (360)
T 1tw3_A          243 FE-PLPRK-ADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRI  284 (360)
T ss_dssp             TS-CCSSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             CC-CCCCC-ccEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            65 45654 999999999986322                                    12345777778899999999


Q ss_pred             EEEecC-CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          212 ALIVPC-LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       212 vl~~~g-~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ++.-.. .++...   .    .+..+.+.. -|+..|             ...++.+|+++++++.| |++.++....
T Consensus       285 ~i~e~~~~~~~~~---~----~~~~~~~~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~~  340 (360)
T 1tw3_A          285 LIHERDDLHENSF---N----EQFTELDLR-MLVFLG-------------GALRTREKWDGLAASAG-LVVEEVRQLP  340 (360)
T ss_dssp             EEEECCBCGGGCC---S----HHHHHHHHH-HHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEEEeccCCCCC---c----chhhhccHH-HhhhcC-------------CcCCCHHHHHHHHHHCC-CeEEEEEeCC
Confidence            987544 332210   0    111111111 112212             12579999999999995 9988877653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.07  E-value=1.4e-05  Score=77.19  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=94.6

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~~f~~gvpgSF  131 (360)
                      ++..+|+|+|||+|..+..+...               .|..+++.-|+|  +.-...+. +   .-..+  +.-+.|.|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~--v~~~~~d~  249 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKH---------------FPELDSTILNLP--GAIDLVNENAAEKGVADR--MRGIAVDI  249 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHH---------------CTTCEEEEEECG--GGHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             CCCCEEEEECCcccHHHHHHHHH---------------CCCCeEEEEecH--HHHHHHHHHHHhcCCCCC--EEEEeCcc
Confidence            44679999999999987766432               145778888984  33333322 1   11111  22344567


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ....+|+.  |+++++.++|.++.                                    .+...+|+.-++-|+|||++
T Consensus       250 ~~~~~~~~--D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l  291 (359)
T 1x19_A          250 YKESYPEA--DAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRL  291 (359)
T ss_dssp             TTSCCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             ccCCCCCC--CEEEEechhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            76666655  99999999985322                                    13556788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHH---cCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAK---MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~---eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ++.-...++. .  ..    .+..+.    .|..   .|.          ....+++.+|+++++++.| |++.++...
T Consensus       292 ~i~e~~~~~~-~--~~----~~~~~~----~~~~~~~~g~----------~~~~~~t~~e~~~ll~~aG-f~~v~~~~~  348 (359)
T 1x19_A          292 LILDMVIDDP-E--NP----NFDYLS----HYILGAGMPF----------SVLGFKEQARYKEILESLG-YKDVTMVRK  348 (359)
T ss_dssp             EEEEECCCCT-T--SC----CHHHHH----HHGGGGGSSC----------CCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred             EEEecccCCC-C--Cc----hHHHHH----HHHHhcCCCC----------cccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence            7765444432 1  00    112211    2221   121          1233589999999999995 998777654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.02  E-value=3.9e-05  Score=69.55  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEecC
Q 018119          193 GIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      |...+|+.-++-|+|||++++.++.
T Consensus       123 ~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          123 DLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeccc
Confidence            4566788888999999999998754

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.00  E-value=3.1e-05  Score=69.29  Aligned_cols=104  Identities=15%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..+..+....               +  +|+--|+.. +.-...+ .++  +--|..+   .+..-.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---------------~--~v~~~D~s~-~~~~~a~~~~~--~~~~~~~---d~~~~~   96 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---------------G--DTAGLELSE-DMLTHARKRLP--DATLHQG---DMRDFR   96 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---------------S--EEEEEESCH-HHHHHHHHHCT--TCEEEEC---CTTTCC
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---------------C--cEEEEeCCH-HHHHHHHHhCC--CCEEEEC---CHHHcc
Confidence            34799999999999988775431               1  333344321 1111111 111  1112222   222222


Q ss_pred             CCCCceeEEEe-cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHC-SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~S-s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      + ++++|+|+| ..++||+...                                   .|+..+|+.-++-|+|||++++.
T Consensus        97 ~-~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           97 L-GRKFSAVVSMFSSVGYLKTT-----------------------------------EELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             C-SSCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             c-CCCCcEEEEcCchHhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            2 578999995 4599996431                                   24667888888999999999998


Q ss_pred             ecCCC
Q 018119          215 VPCLP  219 (360)
Q Consensus       215 ~~g~~  219 (360)
                      ....+
T Consensus       141 ~~~~~  145 (239)
T 3bxo_A          141 PWWFP  145 (239)
T ss_dssp             CCCCT
T ss_pred             eccCc
Confidence            65444

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.97  E-value=1.5e-05  Score=73.42  Aligned_cols=106  Identities=10%  Similarity=0.007  Sum_probs=65.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCC-CcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSD-RQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~-~~~f~~gvpgSFy~rl  135 (360)
                      -.+|+|+|||+|..|..+.. ++             -|+=.||--|.-. ++-...+. .... +-..+.+..+....-.
T Consensus        78 G~~VldlG~G~G~~~~~la~-~V-------------G~~G~V~avD~s~-~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~  142 (233)
T 4df3_A           78 GDRILYLGIASGTTASHMSD-II-------------GPRGRIYGVEFAP-RVMRDLLTVVRDRRNIFPILGDARFPEKYR  142 (233)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-HH-------------CTTCEEEEEECCH-HHHHHHHHHSTTCTTEEEEESCTTCGGGGT
T ss_pred             CCEEEEecCcCCHHHHHHHH-Hh-------------CCCceEEEEeCCH-HHHHHHHHhhHhhcCeeEEEEeccCccccc
Confidence            57999999999999888754 32             1333444444431 22222221 1111 2235566666666556


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ++.+++|++|+..+.||                                        |-..++..-.+-|||||++++..
T Consensus       143 ~~~~~vDvVf~d~~~~~----------------------------------------~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPE----------------------------------------QAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             TTCCCEEEEEECCCCTT----------------------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccceEEEEEEeccCCh----------------------------------------hHHHHHHHHHHhccCCCEEEEEE
Confidence            77789999998766665                                        12235666678899999999986


Q ss_pred             cCC
Q 018119          216 PCL  218 (360)
Q Consensus       216 ~g~  218 (360)
                      -.+
T Consensus       183 k~r  185 (233)
T 4df3_A          183 KAR  185 (233)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.96  E-value=2e-05  Score=73.73  Aligned_cols=42  Identities=10%  Similarity=0.093  Sum_probs=32.1

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ++++|+|+|+.++||+..                                    .|+...|+.-++-| |||++++.+.
T Consensus       108 ~~~fD~Vv~~~~l~~~~~------------------------------------~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRFTT------------------------------------EEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             TTCCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             CCCccEEEEhhhhHhCCH------------------------------------HHHHHHHHHHHHhC-cCcEEEEEec
Confidence            468999999999998532                                    13445666666778 9999999874

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.95  E-value=1.6e-05  Score=71.24  Aligned_cols=105  Identities=14%  Similarity=0.235  Sum_probs=63.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC--CcceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD--RQYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~--~~~f~~gvpgSFy~r  134 (360)
                      ...+|+|+|||+|..+..+...                 ..+++--|....-....-+.++..  +--|   +.+.+..-
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~---~~~d~~~~   96 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-----------------FKNTWAVDLSQEMLSEAENKFRSQGLKPRL---ACQDISNL   96 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-----------------SSEEEEECSCHHHHHHHHHHHHHTTCCCEE---ECCCGGGC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-----------------CCcEEEEECCHHHHHHHHHHHhhcCCCeEE---EecccccC
Confidence            4579999999999998877531                 023444444221111110111000  1112   12233333


Q ss_pred             cCCCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .+| +++|+|+++. ++||+...                                   .|...+|+.-++-|+|||++++
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDS-----------------------------------DDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             Ccc-CCceEEEEcCccccccCCH-----------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence            355 7999999999 99996321                                   2466788888899999999999


Q ss_pred             EecC
Q 018119          214 IVPC  217 (360)
Q Consensus       214 ~~~g  217 (360)
                      .+..
T Consensus       141 ~~~~  144 (246)
T 1y8c_A          141 DINS  144 (246)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.93  E-value=3.5e-05  Score=67.82  Aligned_cols=19  Identities=26%  Similarity=0.385  Sum_probs=15.8

Q ss_pred             eeEEeeecCCCCCccHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ..+|+|+|||+|..++.+.
T Consensus        61 ~~~vLDiG~G~G~~~~~l~   79 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAH   79 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHH
Confidence            4699999999998877653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.92  E-value=2.3e-05  Score=70.30  Aligned_cols=93  Identities=18%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             eEEeeecCCCCCccHHHHH-----------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeec
Q 018119           59 FSIADLGCSVGPNTFNAVQ-----------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGV  127 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~-----------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gv  127 (360)
                      .+|+|+|||+|..+..+..           ..++..+++....+   +.+++...|+                       
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~-----------------------   88 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDM-----------------------   88 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCG-----------------------
T ss_pred             CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcCh-----------------------
Confidence            6999999999998887653           23333333322211   1233333332                       


Q ss_pred             CCccccccCCCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          128 PGSFHNRLFPKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       128 pgSFy~rlfP~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                          ..-.+| +++|+|+++. ++||+...                                   .|...+|+.-++-|+
T Consensus        89 ----~~~~~~-~~fD~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~  128 (243)
T 3d2l_A           89 ----RELELP-EPVDAITILCDSLNYLQTE-----------------------------------ADVKQTFDSAARLLT  128 (243)
T ss_dssp             ----GGCCCS-SCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHHEE
T ss_pred             ----hhcCCC-CCcCEEEEeCCchhhcCCH-----------------------------------HHHHHHHHHHHHhcC
Confidence                222234 7899999987 99996431                                   245667888889999


Q ss_pred             cCCeEEEEecC
Q 018119          207 SGGLMALIVPC  217 (360)
Q Consensus       207 pGG~lvl~~~g  217 (360)
                      |||++++.+..
T Consensus       129 pgG~l~~~~~~  139 (243)
T 3d2l_A          129 DGGKLLFDVHS  139 (243)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCeEEEEEcCC
Confidence            99999997743

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.91  E-value=5.9e-05  Score=72.99  Aligned_cols=99  Identities=16%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCC-cceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDR-QYYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~-~~f~~gvpgSFy  132 (360)
                      .-+|+|+|||+|..++.+.+.                +..+|+--|+.  +.-...+..    .-.. --|..   |...
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~----------------g~~~v~gvD~s--~~l~~a~~~~~~~~~~~~v~~~~---~d~~  125 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA----------------GARKVIGIECS--SISDYAVKIVKANKLDHVVTIIK---GKVE  125 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT----------------TCSEEEEEECS--THHHHHHHHHHHTTCTTTEEEEE---SCTT
T ss_pred             CCEEEEEeccchHHHHHHHHC----------------CCCEEEEECcH--HHHHHHHHHHHHcCCCCcEEEEE---CcHH
Confidence            468999999999887776432                12466777764  233232221    1011 12333   3344


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--+|.+++|+|+|....+++...                                   .++..+|+.+.+-|+|||+|+
T Consensus       126 ~~~~~~~~fD~Iis~~~~~~l~~~-----------------------------------~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          126 EVELPVEKVDIIISEWMGYCLFYE-----------------------------------SMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             TCCCSSSCEEEEEECCCBBTBTBT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             HccCCCCceEEEEEccccccccCc-----------------------------------hhHHHHHHHHHHhCCCCCEEc
Confidence            445788999999998766664331                                   246678999999999999997

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.91  E-value=3.7e-05  Score=67.87  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=41.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~~~~~f~~gvpgSFy  132 (360)
                      ...+|+|+|||+|..+..+....                 .+|+--|.-. +.-...+    ...-.+--|..   +...
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~-----------------~~v~~vD~~~-~~~~~a~~~~~~~~~~~v~~~~---~d~~  135 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLV-----------------QHVCSVERIK-GLQWQARRRLKNLDLHNVSTRH---GDGW  135 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEE---SCGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-----------------CEEEEEecCH-HHHHHHHHHHHHcCCCceEEEE---CCcc
Confidence            45799999999999998775420                 2233333321 1111111    00001111222   2233


Q ss_pred             cccCCCCceeEEEecccccccC
Q 018119          133 NRLFPKASINFFHCSYGLQWLS  154 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS  154 (360)
                      ..+.+.+++|+++++.++||+.
T Consensus       136 ~~~~~~~~~D~i~~~~~~~~~~  157 (210)
T 3lbf_A          136 QGWQARAPFDAIIVTAAPPEIP  157 (210)
T ss_dssp             GCCGGGCCEEEEEESSBCSSCC
T ss_pred             cCCccCCCccEEEEccchhhhh
Confidence            4444567999999999999843

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.90  E-value=4e-05  Score=65.85  Aligned_cols=46  Identities=7%  Similarity=0.013  Sum_probs=35.8

Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|.+++|+++++..+||-                                     ..++..+|+.-.+-|+|||++++..
T Consensus       115 ~~~~~~D~v~~~~~~~~~-------------------------------------~~~~~~~l~~~~~~L~~gG~l~~~~  157 (194)
T 1dus_A          115 VKDRKYNKIITNPPIRAG-------------------------------------KEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             CTTSCEEEEEECCCSTTC-------------------------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCceEEEECCCcccc-------------------------------------hhHHHHHHHHHHHHcCCCCEEEEEE
Confidence            456789999999888871                                     1245567888889999999999997


Q ss_pred             cCC
Q 018119          216 PCL  218 (360)
Q Consensus       216 ~g~  218 (360)
                      ...
T Consensus       158 ~~~  160 (194)
T 1dus_A          158 QTK  160 (194)
T ss_dssp             EST
T ss_pred             CCC
Confidence            554

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.84  E-value=1.7e-05  Score=71.81  Aligned_cols=143  Identities=15%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-Hhhhcc-cccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 018119           25 EFQSHGVETAKAIINRVI-SDKLDL-NRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFN  102 (360)
Q Consensus        25 ~~Q~~~~~~~~~~l~~ai-~~~l~~-~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~n  102 (360)
                      ..|+++++...|.+.-.. ...++. ..+   ....-+|+|+|||+|..++.+...               .|+..|+--
T Consensus         3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~f---~~~~~~vLDiGcG~G~~~~~lA~~---------------~p~~~v~gi   64 (218)
T 3dxy_A            3 SGQEHALENYWPVMGVEFSEDMLDFPALF---GREAPVTLEIGFGMGASLVAMAKD---------------RPEQDFLGI   64 (218)
T ss_dssp             ----CHHHHHHHHHBCCCCSSCCCHHHHH---SSCCCEEEEESCTTCHHHHHHHHH---------------CTTSEEEEE
T ss_pred             HHHHHHHHHHhHHhCCCCCCCCCCHHHHc---CCCCCeEEEEeeeChHHHHHHHHH---------------CCCCeEEEE
Confidence            457777776666543000 000000 112   134568999999999988877541               123444444


Q ss_pred             CCCCCchHHHHhhC---CCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCC
Q 018119          103 DLVSNDFNALYKSL---PSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGP  179 (360)
Q Consensus       103 Dlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~  179 (360)
                      |.-..=-...-+..   ...+--|..+.-..+....+|++++|.+++++...|-.....           +.++.     
T Consensus        65 D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-----------~rr~~-----  128 (218)
T 3dxy_A           65 EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHN-----------KRRIV-----  128 (218)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGG-----------GGSSC-----
T ss_pred             EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhh-----------hhhhh-----
Confidence            44321111111110   001111222221222234578999999999999998433110           00110     


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          180 NEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       180 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                                    -..||+.-++-|+|||++++..
T Consensus       129 --------------~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          129 --------------QVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             --------------SHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------hHHHHHHHHHHcCCCcEEEEEe
Confidence                          1237777788999999999875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.84  E-value=0.00013  Score=62.05  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh---CCCCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS---LPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~---l~~~~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|..++.+...               .|..+|+-.|....=....=+.   ..-..++++.+.   ...
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~---------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d---~~~   86 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRS---------------TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG---APR   86 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTT---------------SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC---TTG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHH---------------CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc---hHh
Confidence            4579999999999888766431               1346677777643211111111   111112333322   222


Q ss_pred             ccCCC--CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          134 RLFPK--ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       134 rlfP~--~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                       .+|.  +++|+++++.++||    +.                                      +|+.-.+-|+|||++
T Consensus        87 -~~~~~~~~~D~i~~~~~~~~----~~--------------------------------------~l~~~~~~L~~gG~l  123 (178)
T 3hm2_A           87 -AFDDVPDNPDVIFIGGGLTA----PG--------------------------------------VFAAAWKRLPVGGRL  123 (178)
T ss_dssp             -GGGGCCSCCSEEEECC-TTC----TT--------------------------------------HHHHHHHTCCTTCEE
T ss_pred             -hhhccCCCCCEEEECCcccH----HH--------------------------------------HHHHHHHhcCCCCEE
Confidence             3454  79999999999988    11                                      455556789999999


Q ss_pred             EEEec
Q 018119          212 ALIVP  216 (360)
Q Consensus       212 vl~~~  216 (360)
                      ++...
T Consensus       124 ~~~~~  128 (178)
T 3hm2_A          124 VANAV  128 (178)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            98864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.84  E-value=6.9e-05  Score=64.73  Aligned_cols=20  Identities=15%  Similarity=-0.009  Sum_probs=17.6

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus        23 ~~~vLDiGcG~G~~~~~la~   42 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAG   42 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHT
T ss_pred             CCEEEEEcCCCCHHHHHHHH
Confidence            46899999999999998865

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.80  E-value=8.5e-05  Score=64.66  Aligned_cols=47  Identities=9%  Similarity=0.029  Sum_probs=34.4

Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH--HhccCCeEEEE
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ--ELASGGLMALI  214 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~--EL~pGG~lvl~  214 (360)
                      |++++|+++++..+||..                                     .|+..+|+.-.+  -|+|||++++.
T Consensus       110 ~~~~fD~i~~~~p~~~~~-------------------------------------~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDS-------------------------------------ADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             CSSCCSEEEECCCTTSCH-------------------------------------HHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             cCCCccEEEECCCCCcch-------------------------------------hhHHHHHHHHHhcCccCCCeEEEEE
Confidence            467999999988877731                                     134456666666  89999999998


Q ss_pred             ecCCCC
Q 018119          215 VPCLPD  220 (360)
Q Consensus       215 ~~g~~~  220 (360)
                      ...+..
T Consensus       153 ~~~~~~  158 (189)
T 3p9n_A          153 RATTCA  158 (189)
T ss_dssp             EETTSC
T ss_pred             ecCCCC
Confidence            865543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.78  E-value=4.9e-05  Score=66.48  Aligned_cols=55  Identities=11%  Similarity=0.131  Sum_probs=36.4

Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+|+.++||...   ...                      ..+  ...+....+|+.-.+-|+|||+|++.+
T Consensus       102 ~~~~~fD~v~~~~~~~~~g~---~~~----------------------d~~--~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          102 LQDKKIDIILSDAAVPCIGN---KID----------------------DHL--NSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             HTTCCEEEEEECCCCCCCSC---HHH----------------------HHH--HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcccEEEeCCCcCCCCC---ccc----------------------CHH--HHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            67889999999999999422   000                      000  001223456777778899999999976


Q ss_pred             cC
Q 018119          216 PC  217 (360)
Q Consensus       216 ~g  217 (360)
                      ..
T Consensus       155 ~~  156 (201)
T 2plw_A          155 YL  156 (201)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.77  E-value=3.2e-05  Score=65.12  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc-
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL-  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl-  135 (360)
                      ...+|+|+|||+|..+..+.+..              .|..+++-.|+..  .-    .+  .+--+..+   .+..-- 
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~--~~----~~--~~~~~~~~---d~~~~~~   76 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQI--------------GGKGRIIACDLLP--MD----PI--VGVDFLQG---DFRDELV   76 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH--------------CTTCEEEEEESSC--CC----CC--TTEEEEES---CTTSHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--------------CCCCeEEEEECcc--cc----cc--CcEEEEEc---ccccchh
Confidence            34699999999999888765432              1235666666542  11    11  11123222   233222 


Q ss_pred             -------CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Q 018119          136 -------FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG  208 (360)
Q Consensus       136 -------fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG  208 (360)
                             +|++++|+++++..+||......                      +..     ........+|+.-.+-|+||
T Consensus        77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~~l~~~~~~L~~g  129 (180)
T 1ej0_A           77 MKALLERVGDSKVQVVMSDMAPNMSGTPAV----------------------DIP-----RAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCSCHHH----------------------HHH-----HHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhhccCCCCceeEEEECCCccccCCCcc----------------------chH-----HHHHHHHHHHHHHHHHcCCC
Confidence                   77889999999999999544110                      000     01122366788888899999


Q ss_pred             CeEEEEecCCC
Q 018119          209 GLMALIVPCLP  219 (360)
Q Consensus       209 G~lvl~~~g~~  219 (360)
                      |++++......
T Consensus       130 G~l~~~~~~~~  140 (180)
T 1ej0_A          130 GSFVVKVFQGE  140 (180)
T ss_dssp             EEEEEEEESST
T ss_pred             cEEEEEEecCC
Confidence            99999875443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.76  E-value=7.9e-05  Score=65.26  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC-CcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD-RQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~-~~~f~~gvpgSFy~rl  135 (360)
                      ...+|+|+|||+|..++.+...            +   +. +|+-.|....=....-+.+... +--+..+.   +..--
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~------------~---~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d---~~~~~  102 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLG------------G---FP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMD---VRKLD  102 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHT------------T---CC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECC---TTSCC
T ss_pred             CCCeEEEECCCCcHHHHHHHHc------------C---CC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcc---hhcCC
Confidence            3468999999999998876542            0   11 4444444321111111111111 11122222   22224


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|+|+++.++|.+.....       ..|..        .+        ....|...+|+.-.+-|+|||++++..
T Consensus       103 ~~~~~fD~v~~~~~~~~~~~~~~-------~~~~~--------~~--------~~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          103 FPSASFDVVLEKGTLDALLAGER-------DPWTV--------SS--------EGVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             SCSSCEEEEEEESHHHHHTTTCS-------CTTSC--------CH--------HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCcccEEEECcchhhhccccc-------ccccc--------cc--------chhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence            67889999999999987643211       01111        00        123467778888899999999999987


Q ss_pred             cCCC
Q 018119          216 PCLP  219 (360)
Q Consensus       216 ~g~~  219 (360)
                      .+.+
T Consensus       160 ~~~~  163 (215)
T 2pxx_A          160 SAAP  163 (215)
T ss_dssp             SCCH
T ss_pred             CCCc
Confidence            6543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.76  E-value=5.7e-05  Score=69.28  Aligned_cols=160  Identities=15%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+...                 ..+|+-.|... +.-...+.... .. +..+   .+..--+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-~~l~~a~~~~~-~~-~~~~---d~~~~~~  110 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER-----------------GFEVVLVDPSK-EMLEVAREKGV-KN-VVEA---KAEDLPF  110 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT-----------------TCEEEEEESCH-HHHHHHHHHTC-SC-EEEC---CTTSCCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc-----------------CCeEEEEeCCH-HHHHHHHhhcC-CC-EEEC---cHHHCCC
Confidence            3569999999999988766321                 13555566532 11112221111 11 3333   3334447


Q ss_pred             CCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |++++|+|+++. .+||...                                      ...+|+.-++-|+|||++++.+
T Consensus       111 ~~~~fD~v~~~~~~~~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          111 PSGAFEAVLALGDVLSYVEN--------------------------------------KDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             CTTCEEEEEECSSHHHHCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcchhhhcccc--------------------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence            889999999986 5677432                                      3346777788999999999998


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .++.....  .......|+.    +..+...|...... ..+.++.++.+.+|+.++   . +|++..+....
T Consensus       153 ~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l---a-Gf~~~~~~~~~  214 (260)
T 2avn_A          153 DNFYTFLQ--QMIEKDAWDQ----ITRFLKTQTTSVGT-TLFSFNSYAFKPEDLDSL---E-GFETVDIRGIG  214 (260)
T ss_dssp             EBHHHHHH--HHHHTTCHHH----HHHHHHHCEEEEEC-SSEEEEEECBCGGGGSSC---T-TEEEEEEEEEC
T ss_pred             CChHHHHH--HhhcchhHHH----HHHHHhccccccCC-CceeEEEeccCHHHHHHh---c-CceEEEEECCC
Confidence            65421000  0000000111    12223334322000 011122346788998887   5 59998887653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.75  E-value=0.00015  Score=71.24  Aligned_cols=106  Identities=16%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--CCcceEeecCCccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~r  134 (360)
                      ..-+|+|+|||+|..++.+...                 ..+|+..|.-..=....=+++..  ..--|..   +.+..-
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-----------------g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~---~D~~~~  292 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-----------------GAEVVGVEDDLASVLSLQKGLEANALKAQALH---SDVDEA  292 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-----------------TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEE---CSTTTT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-----------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE---cchhhc
Confidence            3569999999999999888642                 02444444421100000000000  0011222   234444


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      +.+++++|+|+|+..+||......                                 .+...||+.-.+-|+|||+++++
T Consensus       293 ~~~~~~fD~Ii~npp~~~~~~~~~---------------------------------~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          293 LTEEARFDIIVTNPPFHVGGAVIL---------------------------------DVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             SCTTCCEEEEEECCCCCTTCSSCC---------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCCeEEEEECCchhhcccccH---------------------------------HHHHHHHHHHHHhcCcCcEEEEE
Confidence            555689999999999998443221                                 24667888888999999999998


Q ss_pred             e
Q 018119          215 V  215 (360)
Q Consensus       215 ~  215 (360)
                      .
T Consensus       340 ~  340 (381)
T 3dmg_A          340 S  340 (381)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.73  E-value=7e-05  Score=73.27  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC-----CCcceEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS-----DRQYYAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~-----~~~~f~~gvpgS  130 (360)
                      .+.-+|+|+|||+|..++.+.+.            +    .-+|+--|..  +.-...+....     .+--|..   |.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~------------g----~~~V~gvD~s--~~~~~a~~~~~~~~~~~~v~~~~---~d  120 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA------------G----ARKVYAVEAT--KMADHARALVKANNLDHIVEVIE---GS  120 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT------------T----CSEEEEEESS--TTHHHHHHHHHHTTCTTTEEEEE---SC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc------------C----CCEEEEEccH--HHHHHHHHHHHHcCCCCeEEEEE---Cc
Confidence            34579999999999887766431            1    1367777774  43333333210     1112333   33


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      ...-.+| +++|+|+|....|++...                                   .++..+|+.+.+-|+|||+
T Consensus       121 ~~~~~~~-~~~D~Iv~~~~~~~l~~e-----------------------------------~~~~~~l~~~~~~LkpgG~  164 (376)
T 3r0q_C          121 VEDISLP-EKVDVIISEWMGYFLLRE-----------------------------------SMFDSVISARDRWLKPTGV  164 (376)
T ss_dssp             GGGCCCS-SCEEEEEECCCBTTBTTT-----------------------------------CTHHHHHHHHHHHEEEEEE
T ss_pred             hhhcCcC-CcceEEEEcChhhcccch-----------------------------------HHHHHHHHHHHhhCCCCeE
Confidence            4444466 899999998777775431                                   2467789999999999999


Q ss_pred             EEEE
Q 018119          211 MALI  214 (360)
Q Consensus       211 lvl~  214 (360)
                      |++.
T Consensus       165 li~~  168 (376)
T 3r0q_C          165 MYPS  168 (376)
T ss_dssp             EESS
T ss_pred             EEEe
Confidence            9764

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.72  E-value=9.4e-05  Score=66.25  Aligned_cols=102  Identities=13%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQY  122 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~  122 (360)
                      ..-+|+|+|||+|..++.+...              .++..+++....+  .+.++++..|...                
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~--~~nv~~~~~d~~~----------------   99 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE--AQNVKLLNIDADT----------------   99 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC--CSSEEEECCCGGG----------------
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC--CCCEEEEeCCHHH----------------
Confidence            3468999999999999887542              2222222222211  1224444444321                


Q ss_pred             eEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          123 YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       123 f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                               ....||++++|.+++++..+|......           +.++                   ....||+.-+
T Consensus       100 ---------l~~~~~~~~~d~v~~~~~~p~~~~~~~-----------~~rl-------------------~~~~~l~~~~  140 (213)
T 2fca_A          100 ---------LTDVFEPGEVKRVYLNFSDPWPKKRHE-----------KRRL-------------------TYSHFLKKYE  140 (213)
T ss_dssp             ---------HHHHCCTTSCCEEEEESCCCCCSGGGG-----------GGST-------------------TSHHHHHHHH
T ss_pred             ---------HHhhcCcCCcCEEEEECCCCCcCcccc-----------cccc-------------------CcHHHHHHHH
Confidence                     112477889999999888777543100           0000                   0234777778


Q ss_pred             HHhccCCeEEEEe
Q 018119          203 QELASGGLMALIV  215 (360)
Q Consensus       203 ~EL~pGG~lvl~~  215 (360)
                      +-|+|||++++..
T Consensus       141 ~~LkpgG~l~~~t  153 (213)
T 2fca_A          141 EVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHTTSCEEEEEE
T ss_pred             HHcCCCCEEEEEe
Confidence            8999999999875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.71  E-value=5.6e-05  Score=69.21  Aligned_cols=66  Identities=15%  Similarity=0.172  Sum_probs=41.4

Q ss_pred             HHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhC
Q 018119          197 FLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRN  276 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~  276 (360)
                      +|+.-++-|+|||++++.+  .+            .|+   ..+..+-..|.+....       .+..+.+++.+.++..
T Consensus       119 ~l~~i~rvLkpgG~lv~~~--~p------------~~e---~~~~~~~~~G~~~d~~-------~~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          119 ILPPLYEILEKNGEVAALI--KP------------QFE---AGREQVGKNGIIRDPK-------VHQMTIEKVLKTATQL  174 (232)
T ss_dssp             THHHHHHHSCTTCEEEEEE--CH------------HHH---SCHHHHC-CCCCCCHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCEEEEEE--Cc------------ccc---cCHHHhCcCCeecCcc-------hhHHHHHHHHHHHHHC
Confidence            4556668899999999965  11            112   1222333345543221       1234889999999999


Q ss_pred             CceeEEEEEEe
Q 018119          277 ASFSIEKFEPL  287 (360)
Q Consensus       277 g~F~I~~~e~~  287 (360)
                      | |++..++..
T Consensus       175 G-f~v~~~~~~  184 (232)
T 3opn_A          175 G-FSVKGLTFS  184 (232)
T ss_dssp             T-EEEEEEEEC
T ss_pred             C-CEEEEEEEc
Confidence            5 999888755

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.71  E-value=0.00025  Score=68.34  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CC-CCcceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PS-DRQYYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~-~~~~f~~gvpgSFy  132 (360)
                      .-+|+|+|||+|..++.+.+.                +..+|+--|..  ..-...+..    .- .+--+..   |...
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~----------------g~~~v~gvD~s--~~~~~a~~~~~~~~~~~~i~~~~---~d~~  123 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKA----------------GAKKVLGVDQS--EILYQAMDIIRLNKLEDTITLIK---GKIE  123 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT----------------TCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEE---SCTT
T ss_pred             CCEEEEeeccCcHHHHHHHHc----------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCcEEEEE---eeHH
Confidence            468999999999887765421                11366777764  232222221    10 1112333   2333


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--+|.+++|+++|....+-+..                                   ..++..+|..+.+-|+|||+++
T Consensus       124 ~~~~~~~~~D~Ivs~~~~~~l~~-----------------------------------~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          124 EVHLPVEKVDVIISEWMGYFLLF-----------------------------------ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TSCCSCSCEEEEEECCCBTTBTT-----------------------------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HhcCCCCcEEEEEEcCchhhccC-----------------------------------HHHHHHHHHHHHhhcCCCcEEE
Confidence            44578889999999752221111                                   1246678999999999999998

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.69  E-value=0.00013  Score=72.82  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=17.8

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+..
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~  193 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAA  193 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            357899999999999988764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.65  E-value=7.8e-05  Score=67.34  Aligned_cols=104  Identities=10%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC--CCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS--DRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~--~~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|..+..+...               .+ -+|+--|+-. +.-...+. ...  .+--|..   |.+..
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~---------------~~-~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~---~d~~~  119 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA---------------PI-DEHWIIECND-GVFQRLRDWAPRQTHKVIPLK---GLWED  119 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS---------------CE-EEEEEEECCH-HHHHHHHHHGGGCSSEEEEEE---SCHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHhc---------------CC-CeEEEEcCCH-HHHHHHHHHHHhcCCCeEEEe---cCHHH
Confidence            3579999999999988766320               11 2444444432 12111111 100  1111222   23333


Q ss_pred             c--cCCCCceeEEEe-cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          134 R--LFPKASINFFHC-SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       134 r--lfP~~S~h~~~S-s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      .  -||++++|+|++ .+++++ ....                                 ..++..+|+.-++-|+|||+
T Consensus       120 ~~~~~~~~~fD~V~~d~~~~~~-~~~~---------------------------------~~~~~~~l~~~~r~LkpgG~  165 (236)
T 1zx0_A          120 VAPTLPDGHFDGILYDTYPLSE-ETWH---------------------------------THQFNFIKNHAFRLLKPGGV  165 (236)
T ss_dssp             HGGGSCTTCEEEEEECCCCCBG-GGTT---------------------------------THHHHHHHHTHHHHEEEEEE
T ss_pred             hhcccCCCceEEEEECCcccch-hhhh---------------------------------hhhHHHHHHHHHHhcCCCeE
Confidence            3  478899999999 666532 1110                                 12345677888889999999


Q ss_pred             EEEE
Q 018119          211 MALI  214 (360)
Q Consensus       211 lvl~  214 (360)
                      |++.
T Consensus       166 l~~~  169 (236)
T 1zx0_A          166 LTYC  169 (236)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.64  E-value=0.00032  Score=62.58  Aligned_cols=113  Identities=10%  Similarity=0.032  Sum_probs=59.5

Q ss_pred             CceeEEeeecCC-CCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc
Q 018119           56 SKVFSIADLGCS-VGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ  121 (360)
Q Consensus        56 ~~~~~IaDlGCs-~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~  121 (360)
                      +...+|+|+||| +|..++.+....             ++..++.....+   ..++++..|..                
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~v~~~~~d~~----------------  114 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN---SNVRLVKSNGG----------------  114 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT---CCCEEEECSSC----------------
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEeCCch----------------
Confidence            345799999999 999998876532             222222222111   02344444421                


Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR  201 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R  201 (360)
                               .. .-+|++++|+|+++-.+||.....  +.+ ...++..|.     ..           ..+...+|+.-
T Consensus       115 ---------~~-~~~~~~~fD~I~~npp~~~~~~~~--~~~-~~~~~~~~~-----~~-----------~~~~~~~l~~~  165 (230)
T 3evz_A          115 ---------II-KGVVEGTFDVIFSAPPYYDKPLGR--VLT-EREAIGGGK-----YG-----------EEFSVKLLEEA  165 (230)
T ss_dssp             ---------SS-TTTCCSCEEEEEECCCCC------------------CCS-----SS-----------CHHHHHHHHHH
T ss_pred             ---------hh-hhcccCceeEEEECCCCcCCcccc--ccC-hhhhhccCc-----cc-----------hHHHHHHHHHH
Confidence                     01 124568999999998888855411  110 000111100     00           12245678888


Q ss_pred             HHHhccCCeEEEEec
Q 018119          202 AQELASGGLMALIVP  216 (360)
Q Consensus       202 a~EL~pGG~lvl~~~  216 (360)
                      .+-|+|||++++.+.
T Consensus       166 ~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          166 FDHLNPGGKVALYLP  180 (230)
T ss_dssp             GGGEEEEEEEEEEEE
T ss_pred             HHHhCCCeEEEEEec
Confidence            888999999999864

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.63  E-value=0.00011  Score=65.12  Aligned_cols=151  Identities=11%  Similarity=0.049  Sum_probs=80.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC------C-CCcceEeecC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------S-DRQYYAAGVP  128 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~------~-~~~~f~~gvp  128 (360)
                      ....+|+|+|||+|..+..+...               .|..+|+--|+...=...+.+...      . .+--|..+  
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~---------------~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~--   88 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQ---------------NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWA--   88 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHH---------------CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEEC--
T ss_pred             cCCCEEEEecCCCCHHHHHHHHH---------------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEec--
Confidence            34579999999999999877542               134677777775432332221100      0 11123333  


Q ss_pred             CccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Q 018119          129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG  208 (360)
Q Consensus       129 gSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG  208 (360)
                       .+..--++.++ |.++  ..+.|.....                               ..-.|...+|+.-++-|+||
T Consensus        89 -d~~~l~~~~~~-d~v~--~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~Lkpg  133 (218)
T 3mq2_A           89 -TAERLPPLSGV-GELH--VLMPWGSLLR-------------------------------GVLGSSPEMLRGMAAVCRPG  133 (218)
T ss_dssp             -CSTTCCSCCCE-EEEE--EESCCHHHHH-------------------------------HHHTSSSHHHHHHHHTEEEE
T ss_pred             -chhhCCCCCCC-CEEE--EEccchhhhh-------------------------------hhhccHHHHHHHHHHHcCCC
Confidence             34444456666 7666  2232321100                               00112234677777899999


Q ss_pred             CeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc--CCHHHHHHHHHhCCceeEEEEEE
Q 018119          209 GLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF--PTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       209 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~--ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      |++++.+....-...                         ..  ++.  ..|.+.  ...+++...++..| |+|..++.
T Consensus       134 G~l~~~~~~~~~~~~-------------------------~~--~~~--~~~~~~~~~~~~~l~~~l~~aG-f~i~~~~~  183 (218)
T 3mq2_A          134 ASFLVALNLHAWRPS-------------------------VP--EVG--EHPEPTPDSADEWLAPRYAEAG-WKLADCRY  183 (218)
T ss_dssp             EEEEEEEEGGGBTTB-------------------------CG--GGT--TCCCCCHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred             cEEEEEecccccccc-------------------------cc--ccc--cCCccchHHHHHHHHHHHHHcC-CCceeeec
Confidence            999997643221100                         00  000  112111  12455888888885 99999988


Q ss_pred             ec
Q 018119          287 LA  288 (360)
Q Consensus       287 ~~  288 (360)
                      +.
T Consensus       184 ~~  185 (218)
T 3mq2_A          184 LE  185 (218)
T ss_dssp             EC
T ss_pred             cc
Confidence            74

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.63  E-value=0.00022  Score=68.28  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=60.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-C---C-CCcceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-P---S-DRQYYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~---~-~~~~f~~gvpgSFy  132 (360)
                      ..+|+|+|||+|..++.+.+.                +.-+|+--|..  +.-...+.. .   - .+--+..   |.+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~----------------g~~~v~~vD~s--~~~~~a~~~~~~~~~~~~i~~~~---~d~~   97 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH----------------GAKHVIGVDMS--SIIEMAKELVELNGFSDKITLLR---GKLE   97 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT----------------CCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEE---SCTT
T ss_pred             CCEEEEecCccHHHHHHHHHC----------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCCEEEEE---Cchh
Confidence            358999999999887655321                11367777764  233332221 1   0 1111322   3333


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--+|.+++|+++|....+.+...                                   .++..+|..+.+-|+|||+++
T Consensus        98 ~~~~~~~~~D~Ivs~~~~~~l~~~-----------------------------------~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1           98 DVHLPFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TSCCSSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             hccCCCCcccEEEEeCchhhcccH-----------------------------------HHHHHHHHHHHhhcCCCeEEE
Confidence            334677899999997544433211                                   135678899999999999997

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.59  E-value=1.6e-05  Score=71.51  Aligned_cols=71  Identities=17%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ  121 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~  121 (360)
                      +.+-+|+|+|||+|+.++.++.              .+++..+++....+   ++..+-+.|+.                
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g---~~~~v~~~d~~----------------  108 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK---TTIKYRFLNKE----------------  108 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC---CSSEEEEECCH----------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCccEEEeccc----------------
Confidence            3467999999999999999854              45666665554433   11223333432                


Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCC
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTP  157 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P  157 (360)
                                 . ..|..++|+|.++..||-|.+.+
T Consensus       109 -----------~-~~~~~~~DvVLa~k~LHlL~~~~  132 (200)
T 3fzg_A          109 -----------S-DVYKGTYDVVFLLKMLPVLKQQD  132 (200)
T ss_dssp             -----------H-HHTTSEEEEEEEETCHHHHHHTT
T ss_pred             -----------c-cCCCCCcChhhHhhHHHhhhhhH
Confidence                       1 24668999999999999995433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.58  E-value=0.00018  Score=66.31  Aligned_cols=98  Identities=14%  Similarity=0.095  Sum_probs=54.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP  137 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP  137 (360)
                      ..+|+|+|||+|..++.+...            +   +  +|+-.|.-..=-...-++......- +.-+-+++.. .+|
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~------------g---~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~-~~~  181 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKL------------G---G--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEA-ALP  181 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT------------T---C--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHH-HGG
T ss_pred             CCEEEEecCCCcHHHHHHHHh------------C---C--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhh-cCc
Confidence            468999999999887765320            1   1  5555565321111111111000000 1111223332 256


Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      .+++|+++++...|++                                         ..++..-.+-|+|||++++..
T Consensus       182 ~~~fD~Vv~n~~~~~~-----------------------------------------~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          182 FGPFDLLVANLYAELH-----------------------------------------AALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             GCCEEEEEEECCHHHH-----------------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEECCcHHHH-----------------------------------------HHHHHHHHHHcCCCCEEEEEe
Confidence            7899999997655542                                         235666667899999999863

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.56  E-value=0.00022  Score=63.73  Aligned_cols=20  Identities=15%  Similarity=0.194  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..+..+..
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~   90 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAE   90 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEEcCCCCHHHHHHHH
Confidence            46999999999999988765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.56  E-value=0.00017  Score=70.62  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=59.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCC---CCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPS---DRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~---~~~~f~~gvpgSFy~  133 (360)
                      .-+|+|+|||+|..++.+...               .|..+|+..|.-. ..-...+ ++..   ....-+..+-+.++.
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~---------------~p~~~V~gvD~s~-~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDK---------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDRCEFMINNALS  286 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHH---------------CTTCEEEEEESCH-HHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred             CCeEEEEeCcchHHHHHHHHH---------------CCCCEEEEEECcH-HHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence            379999999999998887542               1335566666521 1111111 0000   000001112223443


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                       .+|++++|+|+|+-.+|+...++..                                 ....||+.-.+-|+|||++++
T Consensus       287 -~~~~~~fD~Ii~nppfh~~~~~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~i  332 (375)
T 4dcm_A          287 -GVEPFRFNAVLCNPPFHQQHALTDN---------------------------------VAWEMFHHARRCLKINGELYI  332 (375)
T ss_dssp             -TCCTTCEEEEEECCCC-------CC---------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             -cCCCCCeeEEEECCCcccCcccCHH---------------------------------HHHHHHHHHHHhCCCCcEEEE
Confidence             4577899999999999985443321                                 122477777888999999999


Q ss_pred             Ee
Q 018119          214 IV  215 (360)
Q Consensus       214 ~~  215 (360)
                      +.
T Consensus       333 v~  334 (375)
T 4dcm_A          333 VA  334 (375)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.51  E-value=7.3e-05  Score=64.96  Aligned_cols=116  Identities=15%  Similarity=0.063  Sum_probs=64.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccc---
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNR---  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~r---  134 (360)
                      ..+|+|+|||+|..++.+....=    .  .......|.-+|+-.|+...-      .++  +--+.  ..+.+...   
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~----~--~~~~~~~~~~~v~~vD~s~~~------~~~--~~~~~--~~~d~~~~~~~   86 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVN----A--AGTDPSSPVGFVLGVDLLHIF------PLE--GATFL--CPADVTDPRTS   86 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTT----T--TCCCTTSCCCEEEEECSSCCC------CCT--TCEEE--CSCCTTSHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhc----c--ccccccCCCceEEEEechhcc------cCC--CCeEE--EeccCCCHHHH
Confidence            47999999999998887654310    0  000001223577777775410      011  11122  02233221   


Q ss_pred             -----cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          135 -----LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       135 -----lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                           .+|.+++|+|+|..++||.-..   ..+                 +       .........+|+.-.+-|+|||
T Consensus        87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~---~~~-----------------~-------~~~~~~~~~~l~~~~~~LkpgG  139 (196)
T 2nyu_A           87 QRILEVLPGRRADVILSDMAPNATGFR---DLD-----------------H-------DRLISLCLTLLSVTPDILQPGG  139 (196)
T ss_dssp             HHHHHHSGGGCEEEEEECCCCCCCSCH---HHH-----------------H-------HHHHHHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHhcCCCCCcEEEeCCCCCCCCCc---ccC-----------------H-------HHHHHHHHHHHHHHHHHhcCCC
Confidence                 2567799999998877763210   000                 0       0011233567777788999999


Q ss_pred             eEEEEec
Q 018119          210 LMALIVP  216 (360)
Q Consensus       210 ~lvl~~~  216 (360)
                      +|++...
T Consensus       140 ~lv~~~~  146 (196)
T 2nyu_A          140 TFLCKTW  146 (196)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.50  E-value=0.00028  Score=60.80  Aligned_cols=71  Identities=15%  Similarity=0.017  Sum_probs=43.3

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCC
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPK  138 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~  138 (360)
                      -+|+|+|||+|..++.+....                  +|+--|...     -.-.. ..+--|..+   .+.. .+|+
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~------------------~v~gvD~s~-----~~~~~-~~~~~~~~~---d~~~-~~~~   76 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN------------------TVVSTDLNI-----RALES-HRGGNLVRA---DLLC-SINQ   76 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS------------------EEEEEESCH-----HHHHT-CSSSCEEEC---STTT-TBCG
T ss_pred             CeEEEeccCccHHHHHHHhcC------------------cEEEEECCH-----HHHhc-ccCCeEEEC---Chhh-hccc
Confidence            499999999999888774321                  444444421     11111 111123333   3444 4566


Q ss_pred             CceeEEEecccccccCCCC
Q 018119          139 ASINFFHCSYGLQWLSSTP  157 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P  157 (360)
                      +++|+++|+..+||.+..+
T Consensus        77 ~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           77 ESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             GGCSEEEECCCCBTTCCCT
T ss_pred             CCCCEEEECCCCccCCccc
Confidence            8999999999999977643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.49  E-value=0.00036  Score=68.63  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHhccCCeEEE
Q 018119          193 GIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .+..+|.+|.+=|+|||+|+-
T Consensus       167 ~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          167 MLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             SHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhhHHHHHHhhCCCCceECC
Confidence            477789999999999999873

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.48  E-value=0.00026  Score=64.73  Aligned_cols=106  Identities=19%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             CceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhh---c-CCCCccceEEecCCCCCchHHHHhhCC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQS---Y-GHDKLEFQVFFNDLVSNDFNALYKSLP  117 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~---~-~~~~p~~~v~~nDlp~NDFn~lF~~l~  117 (360)
                      .+.-+|+|+|||+|..++.+..              ..++..+++...   . ....+.+.++..|.-            
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~------------  112 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAM------------  112 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTT------------
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHH------------
Confidence            4467899999999999888754              122222221110   0 001122444444442            


Q ss_pred             CCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHH
Q 018119          118 SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESF  197 (360)
Q Consensus       118 ~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~F  197 (360)
                                  .+....||++++|.+++++.-.|..+.-.           |.++                   ....|
T Consensus       113 ------------~~l~~~~~~~~~D~v~~~~~dp~~k~~h~-----------krr~-------------------~~~~~  150 (235)
T 3ckk_A          113 ------------KHLPNFFYKGQLTKMFFLFPDPHFKRTKH-----------KWRI-------------------ISPTL  150 (235)
T ss_dssp             ------------TCHHHHCCTTCEEEEEEESCC----------------------C-------------------CCHHH
T ss_pred             ------------HhhhhhCCCcCeeEEEEeCCCchhhhhhh-----------hhhh-------------------hhHHH
Confidence                        12223478899999999888777543100           0011                   12357


Q ss_pred             HHHHHHHhccCCeEEEEe
Q 018119          198 LLARAQELASGGLMALIV  215 (360)
Q Consensus       198 L~~Ra~EL~pGG~lvl~~  215 (360)
                      |+.-++-|+|||++++..
T Consensus       151 l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          151 LAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHCCCCCEEEEEe
Confidence            777788999999999875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.47  E-value=7.5e-05  Score=66.08  Aligned_cols=79  Identities=10%  Similarity=0.027  Sum_probs=43.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..+..+....              .|..+|+-.|.-. +.-...+. +   .-.+--+..   +.+..
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~v~~~~---~d~~~  139 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIV--------------GEDGLVVSIERIP-ELAEKAERTLRKLGYDNVIVIV---GDGTL  139 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCH-HHHHHHHHHHHHHTCTTEEEEE---SCGGG
T ss_pred             CCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHHHHHHHHcCCCCeEEEE---CCccc
Confidence            4699999999999988775432              0224555555432 11111111 0   001111222   22332


Q ss_pred             ccCCCCceeEEEecccccccC
Q 018119          134 RLFPKASINFFHCSYGLQWLS  154 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS  154 (360)
                      .+.+.+++|+++++.++||+.
T Consensus       140 ~~~~~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          140 GYEPLAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC
T ss_pred             CCCCCCCeeEEEECCchHHHH
Confidence            222367899999999999843

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.46  E-value=0.0013  Score=57.59  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=17.7

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+..
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~   60 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASN   60 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHH
Confidence            357999999999998887754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.46  E-value=0.00038  Score=66.17  Aligned_cols=146  Identities=20%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcc---c
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSF---H  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSF---y  132 (360)
                      ....+|+|+|||+|..|..+.+.                +.-+|+=-|+-.+=-..-.+.-+   ..-... ...+   -
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~----------------ga~~V~aVDvs~~mL~~a~r~~~---rv~~~~-~~ni~~l~  143 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQN----------------GAKLVYAVDVGTNQLVWKLRQDD---RVRSME-QYNFRYAE  143 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT----------------TCSEEEEECSSSSCSCHHHHTCT---TEEEEC-SCCGGGCC
T ss_pred             ccccEEEecCCCccHHHHHHHhC----------------CCCEEEEEECCHHHHHHHHHhCc---ccceec-ccCceecc
Confidence            34579999999999999776432                11356666664331111011111   110000 0000   0


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      ..-+|..++|++++..++|||..                                         .|..-++-|+|||+++
T Consensus       144 ~~~l~~~~fD~v~~d~sf~sl~~-----------------------------------------vL~e~~rvLkpGG~lv  182 (291)
T 3hp7_A          144 PVDFTEGLPSFASIDVSFISLNL-----------------------------------------ILPALAKILVDGGQVV  182 (291)
T ss_dssp             GGGCTTCCCSEEEECCSSSCGGG-----------------------------------------THHHHHHHSCTTCEEE
T ss_pred             hhhCCCCCCCEEEEEeeHhhHHH-----------------------------------------HHHHHHHHcCcCCEEE
Confidence            11256678999999999998733                                         2344457899999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +.+-  +.-    +.+.    +.    +   -..|.+....       .+..+.+++.+.++..| |.+..+...
T Consensus       183 ~lvk--Pqf----e~~~----~~----~---~~~G~vrd~~-------~~~~~~~~v~~~~~~~G-f~v~~~~~s  232 (291)
T 3hp7_A          183 ALVK--PQF----EAGR----EQ----I---GKNGIVRESS-------IHEKVLETVTAFAVDYG-FSVKGLDFS  232 (291)
T ss_dssp             EEEC--GGG----TSCG----GG----C---C-CCCCCCHH-------HHHHHHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEC--ccc----ccCh----hh----c---CCCCccCCHH-------HHHHHHHHHHHHHHHCC-CEEEEEEEC
Confidence            9741  100    0000    00    0   0124432111       12346889999999885 999887755

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.46  E-value=0.00019  Score=69.06  Aligned_cols=103  Identities=12%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCC--CCCcceEeecCCcccccc
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLP--SDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~--~~~~~f~~gvpgSFy~rl  135 (360)
                      -+|+|+|||+|..++.+...               .|..+|+..|.... .-...+ .+.  ....-+.   .+.++.  
T Consensus       198 ~~VLDlGcG~G~~~~~la~~---------------~~~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~~~---~~d~~~--  256 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARH---------------SPKIRLTLCDVSAP-AVEASRATLAANGVEGEVF---ASNVFS--  256 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHH---------------CTTCBCEEEESBHH-HHHHHHHHHHHTTCCCEEE---ECSTTT--
T ss_pred             CeEEEecCccCHHHHHHHHH---------------CCCCEEEEEECCHH-HHHHHHHHHHHhCCCCEEE---Eccccc--
Confidence            48999999999998876432               13345666665321 111111 010  0011122   233433  


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ++++++|+|+|+..+||...                                 ....+...+|+.-++-|+|||++++..
T Consensus       257 ~~~~~fD~Iv~~~~~~~g~~---------------------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          257 EVKGRFDMIISNPPFHDGMQ---------------------------------TSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             TCCSCEEEEEECCCCCSSSH---------------------------------HHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccCCeeEEEECCCcccCcc---------------------------------CCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            24679999999999998321                                 012356778999999999999999975

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.44  E-value=0.00045  Score=63.40  Aligned_cols=124  Identities=15%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh---CCCC-CcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS---LPSD-RQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~---l~~~-~~~f~~gvpgSFy  132 (360)
                      ..-+|+|+|||+|..++.+.+.               .+ -+|+-.|+-..=....=++   .+-. +--+..+.-..+-
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~---------------~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~  112 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTR---------------TK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT  112 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTT---------------CC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG
T ss_pred             CCCEEEEcCCchhHHHHHHHHh---------------cC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh
Confidence            4679999999999988876431               01 1555555532111111011   1101 1112222211111


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                       ..+|++++|+|+|+-.++.....  .+.+                +.+....-......++..||+.-++-|+|||+++
T Consensus       113 -~~~~~~~fD~Ii~npPy~~~~~~--~~~~----------------~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~  173 (259)
T 3lpm_A          113 -DLIPKERADIVTCNPPYFATPDT--SLKN----------------TNEHFRIARHEVMCTLEDTIRVAASLLKQGGKAN  173 (259)
T ss_dssp             -GTSCTTCEEEEEECCCC-----------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             -hhhccCCccEEEECCCCCCCccc--cCCC----------------CchHHHhhhccccCCHHHHHHHHHHHccCCcEEE
Confidence             22567899999998665543110  0000                0000000011123567889999999999999999


Q ss_pred             EEe
Q 018119          213 LIV  215 (360)
Q Consensus       213 l~~  215 (360)
                      +..
T Consensus       174 ~~~  176 (259)
T 3lpm_A          174 FVH  176 (259)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.43  E-value=0.00057  Score=58.33  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=17.3

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..++.+..
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~   53 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAG   53 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHH
Confidence            346999999999998887753

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.40  E-value=0.0003  Score=63.94  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHhccCCeEEEE
Q 018119          193 GIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      |...||+.-++-|||||+|++.
T Consensus       148 ~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          148 QFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             HHHHHHHTHHHHEEEEEEEEEC
T ss_pred             chhhhhhhhhheeCCCCEEEEE
Confidence            5677888888999999998763

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.38  E-value=0.00029  Score=63.18  Aligned_cols=20  Identities=20%  Similarity=0.421  Sum_probs=16.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..+..+..
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~   68 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGP   68 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGG
T ss_pred             CCeEEEeCCCCCHHHHHHHH
Confidence            46899999999998877643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.37  E-value=0.00072  Score=60.51  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=17.0

Q ss_pred             HHHHHHHHHhccCCeEEEEec
Q 018119          196 SFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       196 ~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      .+|+.-++-|+|||++++.+.
T Consensus       142 ~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          142 ILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEe
Confidence            456666788999999999963

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.37  E-value=0.0005  Score=63.10  Aligned_cols=47  Identities=17%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHH
Q 018119           19 SYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        19 sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .|......|.+........        ++. ..   .....+|+|+|||+|..|..+.+
T Consensus        50 ~yr~w~~~~skla~~ll~~--------l~~-~~---l~~g~~VLDlG~GtG~~t~~la~   96 (232)
T 3id6_C           50 EYREWNAFRSKLAGAILKG--------LKT-NP---IRKGTKVLYLGAASGTTISHVSD   96 (232)
T ss_dssp             EEEECCTTTCHHHHHHHTT--------CSC-CS---CCTTCEEEEETCTTSHHHHHHHH
T ss_pred             chhhhchHHHHHHHHHHhh--------hhh-cC---CCCCCEEEEEeecCCHHHHHHHH
Confidence            3777777777765532222        221 01   13358999999999998877644

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.36  E-value=0.00048  Score=62.10  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=16.9

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..+..+..
T Consensus        92 ~~~vLdiG~G~G~~~~~la~  111 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISE  111 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEEeCCcCHHHHHHHH
Confidence            45899999999999887754

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.35  E-value=0.00048  Score=60.92  Aligned_cols=19  Identities=21%  Similarity=0.095  Sum_probs=16.4

Q ss_pred             eEEeeecCCCCCccHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+|+|+|||+|..++.++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~   73 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALS   73 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHH
T ss_pred             CeEEEcCCccCHHHHHHHH
Confidence            5899999999999987654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.33  E-value=0.00067  Score=62.60  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=34.2

Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSA-ESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~-Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      .+|++++|+|+|+--+++...    ..                 +++..++.+. ....++..||+.-++-|+|||+|++
T Consensus       110 ~~~~~~fD~Vv~nPPy~~~~~----~~-----------------~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          110 GLPDEHFHHVIMNPPYNDAGD----RR-----------------TPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             TCCTTCEEEEEECCCC------------------------------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCcCEEEECCCCcCCCC----CC-----------------CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            367789999999866665321    00                 0111111111 1123578899999999999999999


Q ss_pred             Ee
Q 018119          214 IV  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       169 ~~  170 (260)
T 2ozv_A          169 IS  170 (260)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.33  E-value=0.00054  Score=65.85  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C--CC-CCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L--PS-DRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l--~~-~~~~f~~gvpgSF  131 (360)
                      +++.+|+|+|||+|..+..+....               |..+|..-|+-. +.-.+.+. +  +. .+--+..+....|
T Consensus        88 p~~~rVLdIG~G~G~la~~la~~~---------------p~~~v~~VEidp-~vi~~Ar~~~~~~~~~rv~v~~~Da~~~  151 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFADVY---------------PQSRNTVVELDA-ELARLSREWFDIPRAPRVKIRVDDARMV  151 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHHHHS---------------TTCEEEEEESCH-HHHHHHHHHSCCCCTTTEEEEESCHHHH
T ss_pred             CCCCEEEEEECCcCHHHHHHHHHC---------------CCcEEEEEECCH-HHHHHHHHhccccCCCceEEEECcHHHH
Confidence            557899999999998877765410               223333333321 11111111 1  11 1112333333333


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      -.. +|.+++|+|++....||  ..|..+.                                ...|++.-++-|+|||+|
T Consensus       152 l~~-~~~~~fDvIi~D~~~~~--~~~~~L~--------------------------------t~efl~~~~r~LkpgGvl  196 (317)
T 3gjy_A          152 AES-FTPASRDVIIRDVFAGA--ITPQNFT--------------------------------TVEFFEHCHRGLAPGGLY  196 (317)
T ss_dssp             HHT-CCTTCEEEEEECCSTTS--CCCGGGS--------------------------------BHHHHHHHHHHEEEEEEE
T ss_pred             Hhh-ccCCCCCEEEECCCCcc--ccchhhh--------------------------------HHHHHHHHHHhcCCCcEE
Confidence            222 36689999999877776  2233222                                134788888999999999


Q ss_pred             EEEecC
Q 018119          212 ALIVPC  217 (360)
Q Consensus       212 vl~~~g  217 (360)
                      ++....
T Consensus       197 v~~~~~  202 (317)
T 3gjy_A          197 VANCGD  202 (317)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999854

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.26  E-value=0.0016  Score=65.13  Aligned_cols=22  Identities=32%  Similarity=0.348  Sum_probs=18.7

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ...+|+|+|||+|..++.+...
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~  263 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALE  263 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHH
Confidence            4579999999999999888763

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.26  E-value=0.00066  Score=61.50  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119          194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL  273 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i  273 (360)
                      ...+|+.-++-|+|||++++.+......            +.+...+.     +.      . ...|.|++. +|+.+.+
T Consensus       118 ~~~~l~~~~r~LkpGG~l~i~~~~~~~~------------~~~~~~~~-----~~------~-~~~~~~~~~-~el~~~l  172 (225)
T 3p2e_A          118 NRDILSNVADLAKKEAHFEFVTTYSDSY------------EEAEIKKR-----GL------P-LLSKAYFLS-EQYKAEL  172 (225)
T ss_dssp             CHHHHHHHHTTEEEEEEEEEEECCCC--------------------------------------CCHHHHHS-HHHHHHH
T ss_pred             hHHHHHHHHHhcCCCcEEEEEEeccccc------------hhchhhhc-----CC------C-CCChhhcch-HHHHHHH
Confidence            3457777788999999999954221111            10000000     10      0 112333332 4699999


Q ss_pred             HhCCceeEEEEEEec
Q 018119          274 KRNASFSIEKFEPLA  288 (360)
Q Consensus       274 e~~g~F~I~~~e~~~  288 (360)
                      +..| |+|..++.+.
T Consensus       173 ~~aG-f~v~~~~~~~  186 (225)
T 3p2e_A          173 SNSG-FRIDDVKELD  186 (225)
T ss_dssp             HHHT-CEEEEEEEEC
T ss_pred             HHcC-CCeeeeeecC
Confidence            9885 9999999885

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.24  E-value=0.0012  Score=57.82  Aligned_cols=96  Identities=8%  Similarity=-0.028  Sum_probs=55.6

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~~~~~f~~gvpgSFy~  133 (360)
                      .-+|+|+|||+|..++.+....               |..+|+..|... +.-...+    .... .+  +.-+.+.+..
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-~~~~~a~~~~~~~~~-~~--v~~~~~d~~~  126 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVR---------------PEAHFTLLDSLG-KRVRFLRQVQHELKL-EN--IEPVQSRVEE  126 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHC---------------TTSEEEEEESCH-HHHHHHHHHHHHTTC-SS--EEEEECCTTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHHHHHHcCC-CC--eEEEecchhh
Confidence            4599999999999998775421               234566666532 1111111    1110 11  1112222332


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                       +.|.+++|++++...                                          .++..+|+.-++-|+|||++++
T Consensus       127 -~~~~~~~D~i~~~~~------------------------------------------~~~~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          127 -FPSEPPFDGVISRAF------------------------------------------ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             -SCCCSCEEEEECSCS------------------------------------------SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             -CCccCCcCEEEEecc------------------------------------------CCHHHHHHHHHHhcCCCcEEEE
Confidence             235678999997420                                          1245677777889999999999


Q ss_pred             Ee
Q 018119          214 IV  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       164 ~~  165 (207)
T 1jsx_A          164 LK  165 (207)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.23  E-value=0.00038  Score=60.57  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CCc-ceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DRQ-YYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~~-~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..++.+.+..-              |.-+|+--|.-..=....=+.+..   ..+ -|..   +.+..
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~--------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~   85 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVG--------------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK---DGHQN   85 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHC--------------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEEC---SCGGG
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhC--------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHHH
Confidence            46999999999988887755320              123555555532111111011100   011 1222   22222


Q ss_pred             cc-CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          134 RL-FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       134 rl-fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      -. ++++++|+++++..+     .|..  ++        .+.   ..+           .|...+|+.-.+-|+|||+++
T Consensus        86 ~~~~~~~~fD~v~~~~~~-----~~~~--~~--------~~~---~~~-----------~~~~~~l~~~~~~Lk~gG~l~  136 (197)
T 3eey_A           86 MDKYIDCPVKAVMFNLGY-----LPSG--DH--------SIS---TRP-----------ETTIQALSKAMELLVTGGIIT  136 (197)
T ss_dssp             GGGTCCSCEEEEEEEESB-----CTTS--CT--------TCB---CCH-----------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             HhhhccCCceEEEEcCCc-----ccCc--cc--------ccc---cCc-----------ccHHHHHHHHHHhCcCCCEEE
Confidence            21 455899999998666     2211  00        000   011           134457888888999999999


Q ss_pred             EEec
Q 018119          213 LIVP  216 (360)
Q Consensus       213 l~~~  216 (360)
                      +...
T Consensus       137 ~~~~  140 (197)
T 3eey_A          137 VVIY  140 (197)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8863

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.23  E-value=0.00068  Score=59.98  Aligned_cols=19  Identities=16%  Similarity=0.065  Sum_probs=16.5

Q ss_pred             eEEeeecCCCCCccHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~   77 (360)
                      -+|+|+|||+|..++.++.
T Consensus        56 ~~vLDlgcG~G~~~~~l~~   74 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALS   74 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHh
Confidence            5899999999999987654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.23  E-value=0.00097  Score=63.29  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=42.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..++.+....-              ...+|+-.|+-. +.-...+    ...-.+--|..   +.+..
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~--------------~~~~v~gvD~s~-~~~~~a~~~~~~~g~~~v~~~~---~d~~~  137 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVG--------------EKGLVVSVEYSR-KICEIAKRNVERLGIENVIFVC---GDGYY  137 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHC--------------TTCEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEE---SCGGG
T ss_pred             cCEEEEecCCchHHHHHHHHhcC--------------CCCEEEEEECCH-HHHHHHHHHHHHcCCCCeEEEE---CChhh
Confidence            46999999999998877754321              013445555421 1111111    11111111222   23333


Q ss_pred             ccCCCCceeEEEeccccccc
Q 018119          134 RLFPKASINFFHCSYGLQWL  153 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWL  153 (360)
                      -+.+.+++|+|++...+|++
T Consensus       138 ~~~~~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          138 GVPEFSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             CCGGGCCEEEEEECSBBSCC
T ss_pred             ccccCCCeEEEEEcCCHHHH
Confidence            34456789999999999984

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.20  E-value=0.00027  Score=66.53  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             CC-CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FP-KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP-~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      +| .+++|+|+|.+.|+|+..  +                                  +....|+.=++-|+|||.|++.
T Consensus       208 ~~~~~~fDlI~crnvliyf~~--~----------------------------------~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          208 YNVPGPFDAIFCRNVMIYFDK--T----------------------------------TQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             CCCCCCEEEEEECSSGGGSCH--H----------------------------------HHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCcCCCeeEEEECCchHhCCH--H----------------------------------HHHHHHHHHHHHhCCCcEEEEE
Confidence            44 578999999999999743  1                                  1244666677899999999873

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.19  E-value=0.0039  Score=55.19  Aligned_cols=21  Identities=14%  Similarity=0.101  Sum_probs=17.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+..
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~   75 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCL   75 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHH
Confidence            347899999999999988765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.18  E-value=0.0012  Score=62.82  Aligned_cols=98  Identities=8%  Similarity=-0.021  Sum_probs=56.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|+.|..++...               +..+|+--|.-. +.-...+..    .-.+--|..|.   .
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~---------------~ga~V~gIDis~-~~l~~Ar~~~~~~gl~~v~~v~gD---a  181 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHV---------------YGMRVNVVEIEP-DIAELSRKVIEGLGVDGVNVITGD---E  181 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHT---------------TCCEEEEEESSH-HHHHHHHHHHHHHTCCSEEEEESC---G
T ss_pred             CCcCEEEEECCCccHHHHHHHHHc---------------cCCEEEEEECCH-HHHHHHHHHHHhcCCCCeEEEECc---h
Confidence            346899999999999886665321               123344444421 111121111    11112233333   2


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..  +|.+++|+|++...      +|                                   |...+|+.-.+-|+|||+|
T Consensus       182 ~~--l~d~~FDvV~~~a~------~~-----------------------------------d~~~~l~el~r~LkPGG~L  218 (298)
T 3fpf_A          182 TV--IDGLEFDVLMVAAL------AE-----------------------------------PKRRVFRNIHRYVDTETRI  218 (298)
T ss_dssp             GG--GGGCCCSEEEECTT------CS-----------------------------------CHHHHHHHHHHHCCTTCEE
T ss_pred             hh--CCCCCcCEEEECCC------cc-----------------------------------CHHHHHHHHHHHcCCCcEE
Confidence            22  36789999997543      12                                   2445777778899999999


Q ss_pred             EEEe
Q 018119          212 ALIV  215 (360)
Q Consensus       212 vl~~  215 (360)
                      ++..
T Consensus       219 vv~~  222 (298)
T 3fpf_A          219 IYRT  222 (298)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9864

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.17  E-value=0.0015  Score=60.41  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=65.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..++.+...               .|..+|+-.|.... .-.+.+.    ....+--|.   -+.+..
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~---------------~~~~~v~~vD~s~~-~l~~a~~n~~~~~~~~v~~~---~~d~~~  170 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASE---------------RPDCEIIAVDRMPD-AVSLAQRNAQHLAIKNIHIL---QSDWFS  170 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHH---------------CTTSEEEEECSSHH-HHHHHHHHHHHHTCCSEEEE---CCSTTG
T ss_pred             CCEEEEecCCccHHHHHHHHh---------------CCCCEEEEEECCHH-HHHHHHHHHHHcCCCceEEE---Ecchhh
Confidence            468999999999988877532               12345566665321 1111110    000111122   223333


Q ss_pred             ccCCCCceeEEEecccccccCCCCc---cccCC-CCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPK---ELNDQ-NSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG  209 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~---~~~~~-~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  209 (360)
                       .+|++++|+|+|+...+|... +.   .+..+ ...++..|        +        ..-.++..+|+.-.+-|+|||
T Consensus       171 -~~~~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~~--------~--------~g~~~~~~~l~~~~~~LkpgG  232 (276)
T 2b3t_A          171 -ALAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAA--------D--------SGMADIVHIIEQSRNALVSGG  232 (276)
T ss_dssp             -GGTTCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBCH--------H--------HHTHHHHHHHHHHGGGEEEEE
T ss_pred             -hcccCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcCC--------C--------cHHHHHHHHHHHHHHhcCCCC
Confidence             245678999999988877654 11   11100 00011100        0        112356678888889999999


Q ss_pred             eEEEEe
Q 018119          210 LMALIV  215 (360)
Q Consensus       210 ~lvl~~  215 (360)
                      ++++..
T Consensus       233 ~l~~~~  238 (276)
T 2b3t_A          233 FLLLEH  238 (276)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999974

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.15  E-value=0.00039  Score=69.03  Aligned_cols=99  Identities=11%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             CceeEEeeecCC------CCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCC
Q 018119           56 SKVFSIADLGCS------VGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPG  129 (360)
Q Consensus        56 ~~~~~IaDlGCs------~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpg  129 (360)
                      .++.+|+|+|||      +|..|+.++....              |..+|+--|+-.+=   .+   ...+--|..|.  
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f--------------P~a~V~GVDiSp~m---~~---~~~rI~fv~GD--  272 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFF--------------PRGQIYGLDIMDKS---HV---DELRIRTIQGD--  272 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHC--------------TTCEEEEEESSCCG---GG---CBTTEEEEECC--
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhC--------------CCCEEEEEECCHHH---hh---cCCCcEEEEec--
Confidence            456899999999      7888776644321              34677777775431   11   11122244443  


Q ss_pred             ccccccCC------CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          130 SFHNRLFP------KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       130 SFy~rlfP------~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                       ...--|+      .+++|+|+|..+ ||..                                      |...+|+.-.+
T Consensus       273 -a~dlpf~~~l~~~d~sFDlVisdgs-H~~~--------------------------------------d~~~aL~el~r  312 (419)
T 3sso_A          273 -QNDAEFLDRIARRYGPFDIVIDDGS-HINA--------------------------------------HVRTSFAALFP  312 (419)
T ss_dssp             -TTCHHHHHHHHHHHCCEEEEEECSC-CCHH--------------------------------------HHHHHHHHHGG
T ss_pred             -ccccchhhhhhcccCCccEEEECCc-ccch--------------------------------------hHHHHHHHHHH
Confidence             3332244      589999999865 5421                                      34456777778


Q ss_pred             HhccCCeEEEEec
Q 018119          204 ELASGGLMALIVP  216 (360)
Q Consensus       204 EL~pGG~lvl~~~  216 (360)
                      -|+|||++++.-.
T Consensus       313 vLKPGGvlVi~Dl  325 (419)
T 3sso_A          313 HVRPGGLYVIEDM  325 (419)
T ss_dssp             GEEEEEEEEEECG
T ss_pred             hcCCCeEEEEEec
Confidence            9999999999743

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.14  E-value=0.00097  Score=59.89  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC---CchHHHHhhCCCCCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS---NDFNALYKSLPSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~---NDFn~lF~~l~~~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..+..+.+..              .|.-+|+--|+..   .+.....+..+  +--|..+.-.....-
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~--------------g~~~~v~gvD~s~~~i~~~~~~a~~~~--~v~~~~~d~~~~~~~  141 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIV--------------GPDGLVYAVEFSHRSGRDLINLAKKRT--NIIPVIEDARHPHKY  141 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEECCCHHHHHHHHHHHHHCT--TEEEECSCTTCGGGG
T ss_pred             CCEEEEEcccCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHhhccC--CeEEEEcccCChhhh
Confidence            4699999999999988775532              0224555556542   12333333321  112333321111111


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -++.+++|++++..+      .|.                                  ....++..-.+-|+|||++++.
T Consensus       142 ~~~~~~~D~V~~~~~------~~~----------------------------------~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          142 RMLIAMVDVIFADVA------QPD----------------------------------QTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             GGGCCCEEEEEECCC------CTT----------------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCcEEEEEEcCC------Ccc----------------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence            235679999998543      010                                  1233566667899999999997


Q ss_pred             ecC
Q 018119          215 VPC  217 (360)
Q Consensus       215 ~~g  217 (360)
                      +..
T Consensus       182 ~~~  184 (233)
T 2ipx_A          182 IKA  184 (233)
T ss_dssp             EEH
T ss_pred             Ecc
Confidence            643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.13  E-value=0.00066  Score=60.49  Aligned_cols=81  Identities=11%  Similarity=-0.047  Sum_probs=43.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---C-----CCCcceEeecC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---P-----SDRQYYAAGVP  128 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~-----~~~~~f~~gvp  128 (360)
                      ..+|+|+|||+|..+..+....-        .  ...|..+|+--|.-. +.-...+. +   .     ..+--|..+  
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~--------~--~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~v~~~~~--  147 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMN--------V--LENKNSYVIGLERVK-DLVNFSLENIKRDKPELLKIDNFKIIHK--  147 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTT--------T--TTCTTCEEEEEESCH-HHHHHHHHHHHHHCGGGGSSTTEEEEEC--
T ss_pred             CCEEEEECCCCCHHHHHHHHHhc--------c--cCCCCCEEEEEeCCH-HHHHHHHHHHHHcCccccccCCEEEEEC--
Confidence            46999999999988877644210        0  011334566666532 11111111 0   0     111123322  


Q ss_pred             Ccccccc----CCCCceeEEEecccccc
Q 018119          129 GSFHNRL----FPKASINFFHCSYGLQW  152 (360)
Q Consensus       129 gSFy~rl----fP~~S~h~~~Ss~alHW  152 (360)
                       ....-+    ++.+++|++++..++||
T Consensus       148 -d~~~~~~~~~~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          148 -NIYQVNEEEKKELGLFDAIHVGASASE  174 (227)
T ss_dssp             -CGGGCCHHHHHHHCCEEEEEECSBBSS
T ss_pred             -ChHhcccccCccCCCcCEEEECCchHH
Confidence             233333    45678999999999987

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.11  E-value=7.7e-05  Score=67.32  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=17.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..++.+..
T Consensus        79 ~~~vLD~gcG~G~~~~~la~   98 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFAL   98 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHH
T ss_pred             CCEEEECccccCHHHHHHHH
Confidence            56899999999999998865

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.11  E-value=0.00051  Score=61.50  Aligned_cols=82  Identities=17%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC--------CCCcceEeecC
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP--------SDRQYYAAGVP  128 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~--------~~~~~f~~gvp  128 (360)
                      ..+|+|+|||+|..|..+....-    .    . ...+.-+|+-.|.-. +.-...+. +.        ..+--+..+  
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~----~----~-~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~v~~~~~--  152 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIK----A----K-GVDADTRIVGIEHQA-ELVRRSKANLNTDDRSMLDSGQLLIVEG--  152 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHH----H----S-CCCTTCEEEEEESCH-HHHHHHHHHHHHHHHHHHHHTSEEEEES--
T ss_pred             CCEEEEECCCccHHHHHHHHhcc----c----c-cCCccCEEEEEEcCH-HHHHHHHHHHHhcCccccCCCceEEEEC--
Confidence            46999999999999887754321    0    0 001123555555432 11111110 00        001112222  


Q ss_pred             CccccccCCC-CceeEEEeccccccc
Q 018119          129 GSFHNRLFPK-ASINFFHCSYGLQWL  153 (360)
Q Consensus       129 gSFy~rlfP~-~S~h~~~Ss~alHWL  153 (360)
                       .... .+|. +++|++++..++||+
T Consensus       153 -d~~~-~~~~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          153 -DGRK-GYPPNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             -CGGG-CCGGGCSEEEEEECSCBSSC
T ss_pred             -Cccc-CCCcCCCccEEEECCchHHH
Confidence             2333 3454 789999999999883

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.10  E-value=0.00032  Score=66.88  Aligned_cols=49  Identities=12%  Similarity=0.104  Sum_probs=33.9

Q ss_pred             CCCceeEEEecccccc-cCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCSYGLQW-LSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHW-LS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +++++|+|++....|| ++..+..+.                                ...|++.-++-|+|||+|++..
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~--------------------------------~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 TEERYDVVIIDLTDPVGEDNPARLLY--------------------------------TVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGS--------------------------------SHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCcccccCcchhcc--------------------------------HHHHHHHHHHhcCCCcEEEEEc
Confidence            3578999999988887 222111111                                2457777889999999999985


Q ss_pred             cC
Q 018119          216 PC  217 (360)
Q Consensus       216 ~g  217 (360)
                      ..
T Consensus       196 ~~  197 (314)
T 1uir_A          196 GM  197 (314)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.09  E-value=0.0011  Score=59.88  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +..+|+|+|||+|..|+.+..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~   91 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFAS   91 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHT
T ss_pred             CCCEEEEEeCchhHHHHHHHH
Confidence            357999999999999887754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.06  E-value=0.0012  Score=55.58  Aligned_cols=21  Identities=14%  Similarity=0.025  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+.+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~   61 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAAS   61 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHH
Confidence            346899999999999887764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.05  E-value=0.0012  Score=63.57  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=16.0

Q ss_pred             eeEEeeecCCCCCccHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ..+|+|+|||+|..++.+.
T Consensus        51 ~~~VLDiGcGtG~ls~~la   69 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAA   69 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHH
T ss_pred             cCEEEEcCCCccHHHHHHH
Confidence            4699999999999887664

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.04  E-value=0.00078  Score=60.11  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=17.4

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..|+.+..
T Consensus        59 ~~~vLdiG~G~G~~~~~la~   78 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMAR   78 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHH
Confidence            46899999999999988754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.04  E-value=0.0014  Score=62.04  Aligned_cols=21  Identities=14%  Similarity=0.031  Sum_probs=17.5

Q ss_pred             CceeEEeeecCCCCCccHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      +++.+|+|+|||+|..+..+.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~  114 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVL  114 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHH
Confidence            445799999999999887765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.01  E-value=0.0024  Score=54.46  Aligned_cols=21  Identities=24%  Similarity=0.127  Sum_probs=17.2

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+.+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~   51 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVS   51 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHH
Confidence            346899999999999887653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.00  E-value=0.002  Score=58.30  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=17.8

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..++.+..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~   90 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKI   90 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHH
Confidence            457999999999999988753

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.96  E-value=0.0046  Score=55.43  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=17.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ...+|+|+|||+|..++.+.+.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~   95 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADI   95 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHH
Confidence            3568999999999998877543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.95  E-value=0.0058  Score=55.72  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf  136 (360)
                      ...+|+|+|||+|..+..+....               |..+|+--|.... .-...+...+ +-.|..+   .+..--+
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~-~~~~a~~~~~-~~~~~~~---d~~~~~~  144 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL---------------PEITTFGLDVSKV-AIKAAAKRYP-QVTFCVA---SSHRLPF  144 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC---------------TTSEEEEEESCHH-HHHHHHHHCT-TSEEEEC---CTTSCSB
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC---------------CCCeEEEEeCCHH-HHHHHHHhCC-CcEEEEc---chhhCCC
Confidence            45789999999999988764321               1245555665321 1111111110 1123222   2333347


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      |++++|+|+++.+.+                                             +|+.-.+-|+|||++++..+
T Consensus       145 ~~~~fD~v~~~~~~~---------------------------------------------~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          145 SDTSMDAIIRIYAPC---------------------------------------------KAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             CTTCEEEEEEESCCC---------------------------------------------CHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEeCChh---------------------------------------------hHHHHHHhcCCCcEEEEEEc
Confidence            788999999865411                                             12333467999999999987


Q ss_pred             CCC
Q 018119          217 CLP  219 (360)
Q Consensus       217 g~~  219 (360)
                      +.+
T Consensus       180 ~~~  182 (269)
T 1p91_A          180 GPR  182 (269)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.94  E-value=0.0047  Score=55.89  Aligned_cols=72  Identities=14%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSFy  132 (360)
                      ..-+|+|+|||+|..++.+...+              .|..+|+-.|+.. +.-...+..    .-...  +.-+-+.+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~--v~~~~~d~~  155 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIV--------------GPEGRVVSYEIRE-DFAKLAWENIKWAGFDDR--VTIKLKDIY  155 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCH-HHHHHHHHHHHHHTCTTT--EEEECSCGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHh--------------CCCeEEEEEecCH-HHHHHHHHHHHHcCCCCc--eEEEECchh
Confidence            35689999999999888775542              1346677777742 222222211    10111  112233444


Q ss_pred             cccCCCCceeEEEe
Q 018119          133 NRLFPKASINFFHC  146 (360)
Q Consensus       133 ~rlfP~~S~h~~~S  146 (360)
                       ..+|++++|++++
T Consensus       156 -~~~~~~~~D~v~~  168 (255)
T 3mb5_A          156 -EGIEEENVDHVIL  168 (255)
T ss_dssp             -GCCCCCSEEEEEE
T ss_pred             -hccCCCCcCEEEE
Confidence             3478899999998

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.94  E-value=0.0041  Score=56.41  Aligned_cols=22  Identities=14%  Similarity=-0.074  Sum_probs=17.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ...+|+|+|||+|..++.+...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHH
Confidence            4689999999999877776543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.93  E-value=0.0023  Score=56.95  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=18.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ..-+|+|+|||+|..++.+.+.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~   94 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHH
Confidence            3469999999999999887654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.91  E-value=0.0021  Score=57.56  Aligned_cols=20  Identities=20%  Similarity=0.380  Sum_probs=16.9

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..++.+..
T Consensus        55 ~~~vLdiG~G~G~~~~~la~   74 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQ   74 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHH
Confidence            45999999999998887754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.91  E-value=0.0042  Score=56.39  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=17.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +.-+|+|+|||+|..++.+..
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~   69 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSP   69 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHH
Confidence            457999999999999988765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.91  E-value=0.00083  Score=57.50  Aligned_cols=20  Identities=25%  Similarity=0.049  Sum_probs=17.0

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..++.+++
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~   64 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVS   64 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHH
T ss_pred             CCCEEEeCCccCHHHHHHHH
Confidence            46999999999999987653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.90  E-value=0.0012  Score=59.68  Aligned_cols=20  Identities=5%  Similarity=-0.024  Sum_probs=17.1

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus        57 ~~~vLdiG~G~G~~~~~la~   76 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILN   76 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHH
Confidence            44899999999999998755

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.90  E-value=0.0045  Score=52.30  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=17.4

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..++.+..
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~   55 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK   55 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHh
Confidence            346999999999998887753

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.89  E-value=0.0016  Score=57.94  Aligned_cols=21  Identities=19%  Similarity=0.082  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..|..+..
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~   97 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFAR   97 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHH
Confidence            346999999999999987654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.86  E-value=0.002  Score=69.24  Aligned_cols=51  Identities=8%  Similarity=-0.000  Sum_probs=37.2

Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      ....-++.+++|+|+++.++||+..                                    .+...||+.-.+-|+|| .
T Consensus       787 a~dLp~~d~sFDlVV~~eVLeHL~d------------------------------------p~l~~~L~eI~RvLKPG-~  829 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIEHMEE------------------------------------DQACEFGEKVLSLFHPK-L  829 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTTCCS-E
T ss_pred             hHhCCcccCCeeEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCC-E
Confidence            3344456789999999999999543                                    12345777778999999 7


Q ss_pred             EEEEecCC
Q 018119          211 MALIVPCL  218 (360)
Q Consensus       211 lvl~~~g~  218 (360)
                      +++..+.+
T Consensus       830 LIISTPN~  837 (950)
T 3htx_A          830 LIVSTPNY  837 (950)
T ss_dssp             EEEEECBG
T ss_pred             EEEEecCc
Confidence            77776543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.86  E-value=0.0017  Score=59.05  Aligned_cols=21  Identities=10%  Similarity=-0.181  Sum_probs=17.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..++.+..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~   85 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGA   85 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHH
Confidence            456999999999999988765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.85  E-value=0.0013  Score=60.98  Aligned_cols=98  Identities=6%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHH---HhhC-CCCCcceEeecCCccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNAL---YKSL-PSDRQYYAAGVPGSFH  132 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~l---F~~l-~~~~~~f~~gvpgSFy  132 (360)
                      ...+|+|+|||+|..++.+...+-              |..+|+--|.-..=....   ++.. ...+--|..   +.+.
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~--------------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~---~d~~  172 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALN--------------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDIA  172 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHT--------------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCTT
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcC--------------CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---Cchh
Confidence            356999999999998887754321              335666667632111111   1111 111111222   3344


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      . .+|++++|++++    |    .|..                                   ..+|+.-.+-|+|||+++
T Consensus       173 ~-~~~~~~fD~Vi~----~----~~~~-----------------------------------~~~l~~~~~~LkpgG~l~  208 (275)
T 1yb2_A          173 D-FISDQMYDAVIA----D----IPDP-----------------------------------WNHVQKIASMMKPGSVAT  208 (275)
T ss_dssp             T-CCCSCCEEEEEE----C----CSCG-----------------------------------GGSHHHHHHTEEEEEEEE
T ss_pred             c-cCcCCCccEEEE----c----CcCH-----------------------------------HHHHHHHHHHcCCCCEEE
Confidence            4 567789999998    2    2211                                   124666668899999999


Q ss_pred             EEe
Q 018119          213 LIV  215 (360)
Q Consensus       213 l~~  215 (360)
                      +..
T Consensus       209 i~~  211 (275)
T 1yb2_A          209 FYL  211 (275)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.85  E-value=0.00043  Score=60.33  Aligned_cols=127  Identities=11%  Similarity=-0.011  Sum_probs=59.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ....+|+|+|||+|..++.+....               |..+++--|+-..=....=+.+.... .-+.-+-+.+.. .
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~-~   91 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC---------------PGVSVTAVDLSMDALAVARRNAERFG-AVVDWAAADGIE-W   91 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC---------------TTEEEEEEECC--------------------CCHHHHHH-H
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHHHHHhC-CceEEEEcchHh-h
Confidence            446899999999999888775431               23566666663211111101111000 011122233444 4


Q ss_pred             CCC-----CceeEEEecccccccCCC---CccccCCC-CCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          136 FPK-----ASINFFHCSYGLQWLSST---PKELNDQN-SPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       136 fP~-----~S~h~~~Ss~alHWLS~~---P~~~~~~~-~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                      +|+     +++|+++++-.+|+....   +..+.... ..++..|                ......+..||+.-.+-|+
T Consensus        92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~Lk  155 (215)
T 4dzr_A           92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGG----------------EDGLQFYRRMAALPPYVLA  155 (215)
T ss_dssp             HHHHHHTTCCBSEEEECCCCCC----------------------------------------CTTHHHHHHHTCCGGGBC
T ss_pred             hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCC----------------CcHHHHHHHHHHHHHHHhc
Confidence            555     899999998777664432   11111000 0000000                0011224668888888999


Q ss_pred             cCCe-EEEEe
Q 018119          207 SGGL-MALIV  215 (360)
Q Consensus       207 pGG~-lvl~~  215 (360)
                      |||+ +++.+
T Consensus       156 pgG~l~~~~~  165 (215)
T 4dzr_A          156 RGRAGVFLEV  165 (215)
T ss_dssp             SSSEEEEEEC
T ss_pred             CCCeEEEEEE
Confidence            9999 55444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.81  E-value=0.0029  Score=58.16  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.2

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ....+|+|+|||+|..++.+..
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~  100 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKI  100 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHH
Confidence            3467999999999999987753

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.77  E-value=0.0012  Score=61.54  Aligned_cols=108  Identities=14%  Similarity=0.026  Sum_probs=62.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C-----CCC-------Ccc-e
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L-----PSD-------RQY-Y  123 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l-----~~~-------~~~-f  123 (360)
                      .-+|+|+|||+|..++.+...                ..-+|+..|+++.+.-.+.+. .     ...       .++ +
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~----------------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLA----------------GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT----------------TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             CCeEEEecccccHHHHHHHHc----------------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            358999999999888755321                013677777743333222221 1     000       112 2


Q ss_pred             EeecCCccccccC---CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHH
Q 018119          124 AAGVPGSFHNRLF---PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLA  200 (360)
Q Consensus       124 ~~gvpgSFy~rlf---P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~  200 (360)
                      ....-|.....+.   +.+++|+|+++.++|+...                                      ...+|+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~--------------------------------------~~~ll~~  185 (281)
T 3bzb_A          144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA--------------------------------------HDALLRS  185 (281)
T ss_dssp             EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG--------------------------------------HHHHHHH
T ss_pred             EEecCCCccHHHHhhccCCCCCEEEEeCcccChHH--------------------------------------HHHHHHH
Confidence            2222222222332   5689999999888888322                                      3446666


Q ss_pred             HHHHhc---c--CCeEEEEecCCC
Q 018119          201 RAQELA---S--GGLMALIVPCLP  219 (360)
Q Consensus       201 Ra~EL~---p--GG~lvl~~~g~~  219 (360)
                      -.+-|+   |  ||++++.+..+.
T Consensus       186 l~~~Lk~~~p~~gG~l~v~~~~~~  209 (281)
T 3bzb_A          186 VKMLLALPANDPTAVALVTFTHHR  209 (281)
T ss_dssp             HHHHBCCTTTCTTCEEEEEECC--
T ss_pred             HHHHhcccCCCCCCEEEEEEEeee
Confidence            677889   9  999988875543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.75  E-value=0.0018  Score=61.17  Aligned_cols=21  Identities=10%  Similarity=0.067  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+.+|+|+|||+|..+..+..
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~  110 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLK  110 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHh
Confidence            457999999999998887753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.72  E-value=0.0031  Score=57.50  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +..+|+|+|||+|..|+.+..
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~   83 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMAR   83 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHH
Confidence            357999999999999887653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.70  E-value=0.0022  Score=59.86  Aligned_cols=22  Identities=9%  Similarity=0.012  Sum_probs=18.0

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +++-+|+|+|||+|..+..+..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~   95 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILK   95 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTT
T ss_pred             CCCCEEEEECCchHHHHHHHHh
Confidence            4568999999999998877654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.68  E-value=0.0023  Score=56.77  Aligned_cols=21  Identities=19%  Similarity=0.167  Sum_probs=17.5

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...+|+|+|||+|..|+.+..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~   78 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLAR   78 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHT
T ss_pred             CCCEEEEecCCccHHHHHHHH
Confidence            357999999999999987653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.68  E-value=0.00056  Score=60.39  Aligned_cols=24  Identities=17%  Similarity=0.025  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEec
Q 018119          193 GIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      .....|+.-.+-|+|||+|++.+.
T Consensus       117 l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          117 IGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEc
Confidence            345667777789999999998764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.66  E-value=0.0024  Score=58.69  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC-----CCcceEeecCCcc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS-----DRQYYAAGVPGSF  131 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~-----~~~~f~~gvpgSF  131 (360)
                      .-+|+|+|||+|..+..+...+              .|..+|+--|.-. +.-...+. +..     ..+  +.-+-+.+
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~-~~~~~a~~~~~~~~g~~~~~--v~~~~~d~  162 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAV--------------GPAGQVISYEQRA-DHAEHARRNVSGCYGQPPDN--WRLVVSDL  162 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCH-HHHHHHHHHHHHHHTSCCTT--EEEECSCG
T ss_pred             CCEEEEEcccccHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHHHHHHHHhcCCCCCc--EEEEECch
Confidence            4589999999999888775432              1235666666532 11111111 100     011  12223445


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ....+|++++|++++...-.|                                           .+|+.-.+-|+|||++
T Consensus       163 ~~~~~~~~~~D~v~~~~~~~~-------------------------------------------~~l~~~~~~L~pgG~l  199 (280)
T 1i9g_A          163 ADSELPDGSVDRAVLDMLAPW-------------------------------------------EVLDAVSRLLVAGGVL  199 (280)
T ss_dssp             GGCCCCTTCEEEEEEESSCGG-------------------------------------------GGHHHHHHHEEEEEEE
T ss_pred             HhcCCCCCceeEEEECCcCHH-------------------------------------------HHHHHHHHhCCCCCEE
Confidence            555677889999998321000                                           2456666889999999


Q ss_pred             EEEec
Q 018119          212 ALIVP  216 (360)
Q Consensus       212 vl~~~  216 (360)
                      ++..+
T Consensus       200 ~~~~~  204 (280)
T 1i9g_A          200 MVYVA  204 (280)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99874

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.59  E-value=0.0033  Score=60.15  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhccCCeEEEEe
Q 018119          195 ESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ..|++.-.+-|+|||++++..
T Consensus       210 ~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          210 QNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEc
Confidence            457777788999999999985

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.59  E-value=0.0037  Score=58.25  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=17.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ...+|+|+|||+|..|..+.+.
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc
Confidence            3579999999999988776543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.59  E-value=0.0053  Score=58.43  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=17.7

Q ss_pred             eeEEeeecCCCCCccHHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ..+|+|+|||+|..|+.+...
T Consensus       106 g~~VLDiG~G~G~~~~~la~~  126 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKA  126 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHH
Confidence            469999999999999887653

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.57  E-value=0.0043  Score=55.88  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=17.9

Q ss_pred             eeEEeeecCCCCCccHHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      .-+|+|+|||+|..++.+...
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~   81 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASA   81 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHh
Confidence            468999999999999988653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.53  E-value=0.0037  Score=58.50  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhccCCeEEEEec
Q 018119          195 ESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ..|++.-.+-|+|||+|++...
T Consensus       172 ~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          172 QNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCCcEEEEECC
Confidence            4578888899999999998853

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.50  E-value=0.00099  Score=62.56  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ  121 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~  121 (360)
                      +.+-+|+|+|||.|+.|+.++.              ..++.+++.....+   +.+.+-+-|++..              
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g---~~~~~~v~D~~~~--------------  193 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN---VPHRTNVADLLED--------------  193 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT---CCEEEEECCTTTS--------------
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeeeccc--------------
Confidence            4478999999999999998865              45666665544432   3366677777642              


Q ss_pred             ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec-------CCCHHHHHHHHHHHHhhH
Q 018119          122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS-------RGPNEVVEAYSAESAKGI  194 (360)
Q Consensus       122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~-------~~~~~v~~ay~~Q~~~D~  194 (360)
                                    -|...+|++.++=++|-|.+-.+...=+..-++|-|.|.++       +.++...+-|.++|+++.
T Consensus       194 --------------~p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~  259 (281)
T 3lcv_B          194 --------------RLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQA  259 (281)
T ss_dssp             --------------CCCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHH
T ss_pred             --------------CCCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHH
Confidence                          25578999999999999976444311122235555666655       245557777777766554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.50  E-value=0.0017  Score=58.69  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=56.2

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C----CCCCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L----PSDRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l----~~~~~~f~~gvpgSF  131 (360)
                      ..-+|+|+|||+|..++.+...+              .|..+|+-.|... +.-...+. +    ...+--+..   +.+
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~-~~~~~a~~~~~~~~g~~~v~~~~---~d~  157 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAV--------------GEKGLVESYEARP-HHLAQAERNVRAFWQVENVRFHL---GKL  157 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCH-HHHHHHHHHHHHHCCCCCEEEEE---SCG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHHHHHHHHhcCCCCEEEEE---Cch
Confidence            34699999999999888775432              0234566666532 11111111 1    111111222   334


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ...-+|++++|++++.    |    |.                                   ...+|+.-.+-|+|||++
T Consensus       158 ~~~~~~~~~~D~v~~~----~----~~-----------------------------------~~~~l~~~~~~L~~gG~l  194 (258)
T 2pwy_A          158 EEAELEEAAYDGVALD----L----ME-----------------------------------PWKVLEKAALALKPDRFL  194 (258)
T ss_dssp             GGCCCCTTCEEEEEEE----S----SC-----------------------------------GGGGHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCCcCEEEEC----C----cC-----------------------------------HHHHHHHHHHhCCCCCEE
Confidence            4333777899999972    2    21                                   012466666889999999


Q ss_pred             EEEe
Q 018119          212 ALIV  215 (360)
Q Consensus       212 vl~~  215 (360)
                      ++..
T Consensus       195 ~~~~  198 (258)
T 2pwy_A          195 VAYL  198 (258)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.47  E-value=0.0026  Score=58.72  Aligned_cols=71  Identities=15%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~~f~~gvpgSFy~  133 (360)
                      ..+|+|+|||+|..++.+.+.+              .|..+|+..|.-. +.-...+. +   .-..+  +.-+.+.+..
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~--v~~~~~d~~~  175 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAV--------------GSSGKVFAYEKRE-EFAKLAESNLTKWGLIER--VTIKVRDISE  175 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHT--------------TTTCEEEEECCCH-HHHHHHHHHHHHTTCGGG--EEEECCCGGG
T ss_pred             CCEEEEECCcCCHHHHHHHHHh--------------CCCcEEEEEECCH-HHHHHHHHHHHHcCCCCC--EEEEECCHHH
Confidence            4699999999999888765432              1335677777632 22111111 1   10011  1222334444


Q ss_pred             ccCCCCceeEEEe
Q 018119          134 RLFPKASINFFHC  146 (360)
Q Consensus       134 rlfP~~S~h~~~S  146 (360)
                      . +|++++|++++
T Consensus       176 ~-~~~~~~D~V~~  187 (277)
T 1o54_A          176 G-FDEKDVDALFL  187 (277)
T ss_dssp             C-CSCCSEEEEEE
T ss_pred             c-ccCCccCEEEE
Confidence            3 78889999998

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.44  E-value=0.0021  Score=60.05  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=17.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +.+-+|+|+|||+|..+..+..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~   95 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQ   95 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT
T ss_pred             CCCCeEEEEcCCcCHHHHHHHh
Confidence            3457999999999998887753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.43  E-value=0.011  Score=54.90  Aligned_cols=20  Identities=10%  Similarity=0.061  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus       126 ~~~VLDlgcG~G~~~~~la~  145 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAV  145 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHH
T ss_pred             CCEEEEecccCCHHHHHHHH
Confidence            46899999999999988754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.41  E-value=0.0025  Score=61.41  Aligned_cols=21  Identities=10%  Similarity=-0.005  Sum_probs=17.4

Q ss_pred             CceeEEeeecCCCCCccHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      +++-+|+|+|||+|..+..+.
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la  139 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVA  139 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHT
T ss_pred             CCCCEEEEECCCccHHHHHHH
Confidence            345799999999999887764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.40  E-value=0.0021  Score=60.97  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=18.0

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +++-+|+|+|||+|..+..+..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~  115 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVK  115 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTT
T ss_pred             CCCCEEEEECCCchHHHHHHHH
Confidence            3457999999999998887743

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.38  E-value=0.002  Score=61.54  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhccCCeEEEEe
Q 018119          195 ESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ..|++.-.+-|+|||+|++..
T Consensus       202 ~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          202 QSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             --HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhhcCCCeEEEEEC
Confidence            357777788999999999985

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.36  E-value=0.0022  Score=60.11  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=17.8

Q ss_pred             ceeEEeeecCCCCCccHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ...+|+|+|||+|..|..+.+.
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS
T ss_pred             CCCEEEEeccCCCHHHHHHHHc
Confidence            3579999999999988776543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.34  E-value=0.0087  Score=55.47  Aligned_cols=28  Identities=7%  Similarity=0.030  Sum_probs=22.8

Q ss_pred             HhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          191 AKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      ..+...+|+.-++-|+|||+|++.....
T Consensus       187 ~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          187 SLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             GTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            3566788998889999999999987544

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.33  E-value=0.0043  Score=54.96  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=17.1

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..|+.+..
T Consensus        65 ~~~vLdiG~G~G~~~~~la~   84 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGL   84 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEeCCcchHHHHHHHH
Confidence            45999999999999887754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.27  E-value=0.0018  Score=60.11  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH-----------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ-----------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA  125 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~-----------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~  125 (360)
                      .+-+|+|+|||.|+.++..+.           ..|+.+++.....+   +++.+...|++.                   
T Consensus       105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g---~~~~~~v~D~~~-------------------  162 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKD---WDFTFALQDVLC-------------------  162 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTT---CEEEEEECCTTT-------------------
T ss_pred             CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeeccc-------------------
Confidence            467999999999999998762           56666666544332   557777777763                   


Q ss_pred             ecCCccccccCCCCceeEEEecccccccCCCCcc
Q 018119          126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKE  159 (360)
Q Consensus       126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~  159 (360)
                              .. |..++|++.++=++|-|.+....
T Consensus       163 --------~~-~~~~~DvvLllk~lh~LE~q~~~  187 (253)
T 3frh_A          163 --------AP-PAEAGDLALIFKLLPLLEREQAG  187 (253)
T ss_dssp             --------SC-CCCBCSEEEEESCHHHHHHHSTT
T ss_pred             --------CC-CCCCcchHHHHHHHHHhhhhchh
Confidence                    23 44599999999999999765443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.27  E-value=0.01  Score=56.98  Aligned_cols=29  Identities=10%  Similarity=-0.022  Sum_probs=22.9

Q ss_pred             HhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119          191 AKGIESFLLARAQELASGGLMALIVPCLP  219 (360)
Q Consensus       191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  219 (360)
                      .+|+..+|+.-.+-|+|||.++++.....
T Consensus       248 ~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          248 FDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             HHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence            35677789888899999999888875543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.24  E-value=0.0089  Score=60.38  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=15.1

Q ss_pred             eeEEeeecCCCCCccHHH
Q 018119           58 VFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~   75 (360)
                      ..+|+|+|||+|..++.+
T Consensus       159 ~~~VLDiGcGtG~la~~l  176 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFA  176 (480)
T ss_dssp             TCEEEEESCSTTHHHHHH
T ss_pred             CCEEEEecCcccHHHHHH
Confidence            469999999999877655

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.17  E-value=0.027  Score=50.31  Aligned_cols=20  Identities=10%  Similarity=0.074  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..++.+.+
T Consensus        92 ~~~vldiG~G~G~~~~~l~~  111 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSE  111 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEeCCCccHHHHHHHH
Confidence            46999999999998887765

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.16  E-value=0.015  Score=52.67  Aligned_cols=20  Identities=20%  Similarity=0.067  Sum_probs=17.1

Q ss_pred             eEEeeecCCCCCccHHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      -+|+|+|||+|..|+.+.+.
T Consensus        83 ~~VLDiG~GtG~~t~~la~~  102 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDL  102 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHH
T ss_pred             CEEEEEeCCCCHHHHHHHHh
Confidence            58999999999999976553

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.05  E-value=0.0061  Score=57.93  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=21.3

Q ss_pred             HhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          191 AKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      .+....+|+.-++-|+|||+||+....
T Consensus       222 ~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          222 QGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            334567888888999999999997643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.03  E-value=0.016  Score=52.96  Aligned_cols=21  Identities=10%  Similarity=0.181  Sum_probs=17.8

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ++-+|+|+|||+|..|+.+..
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~   99 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATAL   99 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHH
Confidence            356999999999999987754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.02  E-value=0.032  Score=53.44  Aligned_cols=112  Identities=12%  Similarity=-0.001  Sum_probs=59.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~  133 (360)
                      ..-+|+|+|||+|..++.+....-              |...|+-.|.-..=-...=+++.   -..--|..   +.+..
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~--------------~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~---~D~~~  265 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLG--------------PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR---ADARH  265 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHC--------------TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEE---CCGGG
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhC--------------CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEe---CChhh
Confidence            346899999999999888765430              12333333432100000000000   00011222   22333


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -..|..++|+++++--.+|...                      ...        ....+...+++.-.+-|+|||++++
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~----------------------~~~--------~~~~~~~~~~~~~~~~LkpgG~l~i  315 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLG----------------------RKE--------GLFHLYWDFLRGALALLPPGGRVAL  315 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC--------------------------CH--------HHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             CccccCCCCEEEECCCCcCccC----------------------Ccc--------cHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3345567899999766554111                      001        2233446688888899999999999


Q ss_pred             Ee
Q 018119          214 IV  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       316 ~t  317 (354)
T 3tma_A          316 LT  317 (354)
T ss_dssp             EE
T ss_pred             Ee
Confidence            86

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.94  E-value=0.068  Score=51.88  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=23.4

Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...+++..+|..-.+-|+|||.|++...
T Consensus       299 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          299 RAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            3456788899999999999999998864

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.90  E-value=0.0045  Score=58.85  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=17.7

Q ss_pred             eeEEeeecCCCCCccHHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQN   78 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~   78 (360)
                      ..+|+|+|||+|..|..+.+.
T Consensus        83 g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS
T ss_pred             CCEEEEEcCCCCHHHHHHHhc
Confidence            479999999999998877554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.86  E-value=0.016  Score=57.42  Aligned_cols=126  Identities=17%  Similarity=0.099  Sum_probs=69.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--CCcceEeecCCcccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--DRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rl  135 (360)
                      .-+|+|+|||+|..|..+.+..               +.-+|+-+|....=...+-+.+..  ...-+..+....+ ...
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~-~~~  310 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP-SQW  310 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT-HHH
T ss_pred             cCeEEEECCCchHHHHHHHHHc---------------CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc-hhh
Confidence            4689999999999998876531               124566666654333333222210  0111222221111 112


Q ss_pred             CCCCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          136 FPKASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       136 fP~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      +|.+++|.|++   ++.+..+.+.|.....              .++..+     ....+....+|+.=++-|+|||+||
T Consensus       311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~--------------~~~~~~-----~~l~~~q~~~L~~a~~~LkpGG~lv  371 (429)
T 1sqg_A          311 CGEQQFDRILLDAPCSATGVIRRHPDIKWL--------------RRDRDI-----PELAQLQSEILDAIWPHLKTGGTLV  371 (429)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHH--------------CCTTHH-----HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccCCCCEEEEeCCCCcccccCCCcchhhc--------------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            56678999997   3455555555543210              011111     1222234567888888899999999


Q ss_pred             EEecCC
Q 018119          213 LIVPCL  218 (360)
Q Consensus       213 l~~~g~  218 (360)
                      +.....
T Consensus       372 ystcs~  377 (429)
T 1sqg_A          372 YATCSV  377 (429)
T ss_dssp             EEESCC
T ss_pred             EEECCC
Confidence            987543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.79  E-value=0.033  Score=55.46  Aligned_cols=127  Identities=9%  Similarity=0.013  Sum_probs=63.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC---CCCCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL---PSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~r  134 (360)
                      ..+|+|+|||+|.-|+.+...+-              ..-+|+-+|....=...+=+.+   .-.+--+..+....+ ..
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~--------------~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~-~~  324 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMK--------------NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA-PE  324 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTT--------------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC-SS
T ss_pred             cCEEEEeCCCccHHHHHHHHHcC--------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc-ch
Confidence            46899999999999988765320              1134555555321111111111   101111222221111 11


Q ss_pred             cCCCCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          135 LFPKASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       135 lfP~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      -+|++++|.|++   ++.+.-+.+.|.....              .++..+.     ...+.-..+|+.-++-|+|||+|
T Consensus       325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~--------------~~~~~~~-----~l~~~q~~iL~~a~~~LkpGG~l  385 (450)
T 2yxl_A          325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWR--------------LREDKIN-----EMSQLQRELLESAARLVKPGGRL  385 (450)
T ss_dssp             SSCSSCEEEEEEECCCCCGGGTTTSTTHHHH--------------CCTTSHH-----HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCCEEEEcCCCCCCeeeccChhhhhh--------------CCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEE
Confidence            156678999996   2344444444432210              0111111     11122256788778889999999


Q ss_pred             EEEecCC
Q 018119          212 ALIVPCL  218 (360)
Q Consensus       212 vl~~~g~  218 (360)
                      |......
T Consensus       386 vy~tcs~  392 (450)
T 2yxl_A          386 LYTTCSI  392 (450)
T ss_dssp             EEEESCC
T ss_pred             EEEeCCC
Confidence            9886543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.78  E-value=0.043  Score=53.92  Aligned_cols=28  Identities=14%  Similarity=0.134  Sum_probs=22.8

Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...+|+..++..-.+-|+|||+|++...
T Consensus       300 ~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          300 AMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            4556788899999999999999986653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.74  E-value=0.015  Score=52.68  Aligned_cols=21  Identities=10%  Similarity=0.094  Sum_probs=18.0

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ++-+|+|+|||+|..|+.+..
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~   90 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTAL   90 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            356999999999999988765

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.69  E-value=0.0079  Score=54.84  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +-+|+|+|||+|..|+.+..
T Consensus        61 ~~~VLDiG~G~G~~t~~la~   80 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSL   80 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHH
T ss_pred             cCEEEEeeCCcCHHHHHHHH
Confidence            46999999999999988754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.65  E-value=0.031  Score=56.38  Aligned_cols=126  Identities=13%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|.-|+.+.+.+-              +.-+|+-+|.-..=...+=+++.   -.+-.+..+....+-.
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~--------------~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~  182 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMN--------------NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA  182 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTT--------------TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCC--------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh
Confidence            357999999999999998765320              11334444443211111111110   0011122222211110


Q ss_pred             ccCCCCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          134 RLFPKASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       134 rlfP~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                        .+++++|.|++   ++...-+.+.|.....               -.++...    ...+.-..+|+.=++-|+|||+
T Consensus       183 --~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~---------------~~~~~~~----~l~~~q~~iL~~a~~~LkpGG~  241 (479)
T 2frx_A          183 --AVPEMFDAILLDAPCSGEGVVRKDPDALKN---------------WSPESNQ----EIAATQRELIDSAFHALRPGGT  241 (479)
T ss_dssp             --HSTTCEEEEEEECCCCCGGGGGTCTTSSSS---------------CCHHHHH----HHHHHHHHHHHHHHHHEEEEEE
T ss_pred             --hccccCCEEEECCCcCCcccccCCHHHHhh---------------cCHhHHH----HHHHHHHHHHHHHHHhcCCCCE
Confidence              02468999998   3444444555543220               1122111    2222335678888889999999


Q ss_pred             EEEEecC
Q 018119          211 MALIVPC  217 (360)
Q Consensus       211 lvl~~~g  217 (360)
                      ||.....
T Consensus       242 LvysTcs  248 (479)
T 2frx_A          242 LVYSTCT  248 (479)
T ss_dssp             EEEEESC
T ss_pred             EEEeccc
Confidence            9998654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.63  E-value=0.045  Score=51.68  Aligned_cols=108  Identities=9%  Similarity=0.013  Sum_probs=58.7

Q ss_pred             ceeEEeeecCCCCCcc--HHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce-EeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNT--FNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY-AAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt--~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f-~~gvpgSFy~  133 (360)
                      ...+|+|+|||+|.|.  =.   .++   .+..      .+.-+|+-.|+-..        ++  +--| ..|   ....
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs---~~~---a~~~------~~~~~V~gvDis~~--------v~--~v~~~i~g---D~~~  117 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT---AVL---RQWL------PTGTLLVDSDLNDF--------VS--DADSTLIG---DCAT  117 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH---HHH---HHHS------CTTCEEEEEESSCC--------BC--SSSEEEES---CGGG
T ss_pred             CCCEEEEeCCCCCCCCCcHH---HHH---HHHc------CCCCEEEEEECCCC--------CC--CCEEEEEC---cccc
Confidence            3578999999885553  11   111   1111      12356777777543        22  2224 333   3443


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.++ +++|+|+|+.+.+|.....   .+..     + .                  ...+...|+.-.+-|+|||+|++
T Consensus       118 ~~~~-~~fD~Vvsn~~~~~~g~~~---~d~~-----~-~------------------~~l~~~~l~~a~r~LkpGG~~v~  169 (290)
T 2xyq_A          118 VHTA-NKWDLIISDMYDPRTKHVT---KEND-----S-K------------------EGFFTYLCGFIKQKLALGGSIAV  169 (290)
T ss_dssp             CCCS-SCEEEEEECCCCCC---CC---SCCC-----C-C------------------CTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcc-CcccEEEEcCCcccccccc---cccc-----c-h------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence            3333 7899999987766521110   0000     0 0                  01244677777889999999999


Q ss_pred             EecC
Q 018119          214 IVPC  217 (360)
Q Consensus       214 ~~~g  217 (360)
                      ....
T Consensus       170 ~~~~  173 (290)
T 2xyq_A          170 KITE  173 (290)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            7543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=95.61  E-value=0.08  Score=51.62  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             HhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          191 AKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      .+++..+++.-.+-|+|||.+++...
T Consensus       307 ~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          307 SKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            34566788888899999999998864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=95.56  E-value=0.051  Score=50.27  Aligned_cols=20  Identities=15%  Similarity=0.099  Sum_probs=17.4

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus       120 ~~~VLDlgcG~G~~s~~la~  139 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAK  139 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHH
T ss_pred             CCEEEEecCcCCHHHHHHHH
Confidence            46899999999999998754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.56  E-value=0.014  Score=51.64  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=17.4

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      +.-+|+|+|||+|..|+.+..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~   89 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALAL   89 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHT
T ss_pred             CCCEEEEEcCCccHHHHHHHH
Confidence            346999999999998887754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.49  E-value=0.036  Score=51.79  Aligned_cols=19  Identities=21%  Similarity=0.394  Sum_probs=16.6

Q ss_pred             eEEeeecCCCCCccHHHHH
Q 018119           59 FSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+|+|+|||+|..++.+..
T Consensus       125 ~~vLDlG~GsG~~~~~la~  143 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAK  143 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHH
T ss_pred             CEEEEEeCchhHHHHHHHH
Confidence            5899999999999888754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.31  E-value=0.058  Score=51.43  Aligned_cols=125  Identities=13%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHH-HHhh-C--CCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA-LYKS-L--PSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~-lF~~-l--~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|.|||+|..++.+.+.+-+    ..      ....+++-.|+-  +..- +.+. +  ...+.-+..   |.+
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~----~~------~~~~~v~GiDi~--~~~~~~a~~n~~~~g~~~~i~~---~D~  193 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLEL----KG------DVDVHASGVDVD--DLLISLALVGADLQRQKMTLLH---QDG  193 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHT----TS------SCEEEEEEEESC--HHHHHHHHHHHHHHTCCCEEEE---SCT
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHH----hc------CCCceEEEEECC--HHHHHHHHHHHHhCCCCceEEE---CCC
Confidence            35689999999999998877655421    00      013566666662  2211 1111 0  000111222   223


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCe
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIE-SFLLARAQELASGGL  210 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~-~FL~~Ra~EL~pGG~  210 (360)
                      ... .+...+|+|+++--++|....  .....-.+...+|.                   .|.. .|++.-.+-|+|||+
T Consensus       194 l~~-~~~~~fD~Ii~NPPfg~~~~~--~~~~~~~~~~~~g~-------------------~~~~~~~l~~~~~~Lk~gG~  251 (344)
T 2f8l_A          194 LAN-LLVDPVDVVISDLPVGYYPDD--ENAKTFELCREEGH-------------------SFAHFLFIEQGMRYTKPGGY  251 (344)
T ss_dssp             TSC-CCCCCEEEEEEECCCSEESCH--HHHTTSTTCCSSSC-------------------EEHHHHHHHHHHHTEEEEEE
T ss_pred             CCc-cccCCccEEEECCCCCCcCch--hhhhhccccCCCCc-------------------chHHHHHHHHHHHHhCCCCE
Confidence            322 356789999999888774321  11100001001111                   1232 478888889999999


Q ss_pred             EEEEecC
Q 018119          211 MALIVPC  217 (360)
Q Consensus       211 lvl~~~g  217 (360)
                      +++.++.
T Consensus       252 ~~~v~p~  258 (344)
T 2f8l_A          252 LFFLVPD  258 (344)
T ss_dssp             EEEEEEG
T ss_pred             EEEEECc
Confidence            9999853

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.23  E-value=0.093  Score=50.90  Aligned_cols=24  Identities=29%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecC
Q 018119          194 IESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      +..||+.-.+-|+|||++++.++.
T Consensus       143 ~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          143 YGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHHHhCCCCEEEEEECh
Confidence            457888888999999999999853

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=95.15  E-value=0.042  Score=48.06  Aligned_cols=20  Identities=10%  Similarity=0.021  Sum_probs=16.8

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..|+.+..
T Consensus        57 ~~~vLdiG~G~G~~~~~la~   76 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFAR   76 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHT
T ss_pred             CCEEEEEcCCccHHHHHHHH
Confidence            46899999999999887643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.13  E-value=0.018  Score=51.71  Aligned_cols=20  Identities=10%  Similarity=0.180  Sum_probs=17.0

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus        73 ~~~vLdiG~G~G~~~~~la~   92 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMAL   92 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEecCCCCHHHHHHHH
Confidence            45899999999999888754

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.93  E-value=0.077  Score=53.39  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHhccCCeEEEEecC
Q 018119          193 GIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ....+|+.=++-|+|||+||.+...
T Consensus       207 ~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          207 VQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEecc
Confidence            3467888888899999999987643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.89  E-value=0.052  Score=57.32  Aligned_cols=29  Identities=10%  Similarity=0.077  Sum_probs=23.3

Q ss_pred             HHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119          190 SAKGIESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      ..+|...+++.-.+-|+|||+|++....+
T Consensus       632 ~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          632 VQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            34577778988899999999999887543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=94.85  E-value=0.14  Score=49.75  Aligned_cols=28  Identities=11%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...+++..+|..-.+-|+|||.|++...
T Consensus       309 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          309 AGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            3456788899999999999999988864

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=94.41  E-value=0.16  Score=53.11  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNII   80 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii   80 (360)
                      .+..+|+|+|||+|+.+...+++.-
T Consensus       356 ~~~~vVldVGaGrGpLv~~al~A~a  380 (637)
T 4gqb_A          356 TNVQVLMVLGAGRGPLVNASLRAAK  380 (637)
T ss_dssp             TCEEEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHH
Confidence            5578999999999999777766544

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.32  E-value=0.1  Score=49.25  Aligned_cols=66  Identities=14%  Similarity=0.073  Sum_probs=44.3

Q ss_pred             eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119           58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA  125 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~  125 (360)
                      .-+|+|+|||+|..|..+..            .+++.++++...    .+.++++..|.-.-||                
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~----~~~v~vi~gD~l~~~~----------------  110 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL----YNNIEIIWGDALKVDL----------------  110 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH----CSSEEEEESCTTTSCG----------------
T ss_pred             cCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc----CCCeEEEECchhhCCc----------------
Confidence            46899999999999999877            344444444431    1346666666654333                


Q ss_pred             ecCCccccccCCCCceeEEEecccccccC
Q 018119          126 GVPGSFHNRLFPKASINFFHCSYGLQWLS  154 (360)
Q Consensus       126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS  154 (360)
                                 |+.++|.++++...||-+
T Consensus       111 -----------~~~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          111 -----------NKLDFNKVVANLPYQISS  128 (295)
T ss_dssp             -----------GGSCCSEEEEECCGGGHH
T ss_pred             -----------ccCCccEEEEeCcccccH
Confidence                       334578999998888743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=94.16  E-value=0.068  Score=46.25  Aligned_cols=74  Identities=11%  Similarity=-0.042  Sum_probs=38.4

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCCCcceEeecCCcccccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ..-+|+|+|||+|..++.+...                +.-+|+--|.-. +.-...+ .+.  +--|..+   .+..  
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~----------------~~~~v~~vD~~~-~~~~~a~~~~~--~~~~~~~---d~~~--  106 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL----------------GAESVTAFDIDP-DAIETAKRNCG--GVNFMVA---DVSE--  106 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT----------------TBSEEEEEESCH-HHHHHHHHHCT--TSEEEEC---CGGG--
T ss_pred             CCCEEEEEeCCccHHHHHHHHc----------------CCCEEEEEECCH-HHHHHHHHhcC--CCEEEEC---cHHH--
Confidence            4569999999999988766431                112455555421 1111111 111  1113322   2332  


Q ss_pred             CCCCceeEEEecccccccCC
Q 018119          136 FPKASINFFHCSYGLQWLSS  155 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~  155 (360)
                      +| +++|+++++-.+||+..
T Consensus       107 ~~-~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A          107 IS-GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             CC-CCEEEEEECCCC-----
T ss_pred             CC-CCeeEEEECCCchhccC
Confidence            24 68999999999999654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=93.96  E-value=0.14  Score=51.43  Aligned_cols=125  Identities=10%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~r  134 (360)
                      ..+|+|+|||+|.-|+.+.+.+-              ..-+|+-+|.-..=...+=+++.   -.+-.+..+.+..+-. 
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~--------------~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~-  170 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMK--------------GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP-  170 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHT--------------TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-
T ss_pred             CCEEEEECCCcCHHHHHHHHHcC--------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-
Confidence            46999999999999988865321              12345555553222211111111   0111122222222111 


Q ss_pred             cCCCCceeEEEecc---cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          135 LFPKASINFFHCSY---GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       135 lfP~~S~h~~~Ss~---alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                       ..++++|.|++..   .+.-+.+.|.....              .++ +.    ..........+|..=++-|+|||+|
T Consensus       171 -~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~--------------~~~-~~----~~~l~~~Q~~iL~~a~~~LkpGG~L  230 (456)
T 3m4x_A          171 -HFSGFFDRIVVDAPCSGEGMFRKDPNAIKE--------------WTE-ES----PLYCQKRQQEILSSAIKMLKNKGQL  230 (456)
T ss_dssp             -HHTTCEEEEEEECCCCCGGGTTTCHHHHHH--------------CCT-TH----HHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             -hccccCCEEEECCCCCCccccccCHHHhhh--------------cCH-HH----HHHHHHHHHHHHHHHHHhcCCCcEE
Confidence             1246899998732   12222222221110              011 11    1222334457888888899999999


Q ss_pred             EEEecC
Q 018119          212 ALIVPC  217 (360)
Q Consensus       212 vl~~~g  217 (360)
                      |.+...
T Consensus       231 vYsTCs  236 (456)
T 3m4x_A          231 IYSTCT  236 (456)
T ss_dssp             EEEESC
T ss_pred             EEEEee
Confidence            987653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=93.86  E-value=0.39  Score=46.64  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHHhccCCeEEEEec
Q 018119          192 KGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       192 ~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      +++..+|..-.+-|+|||.+++...
T Consensus       316 ~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          316 RGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3566788888899999999998763

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=93.76  E-value=0.21  Score=46.38  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=18.3

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..|..+..
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~   48 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLE   48 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHH
T ss_pred             CCCEEEEEcCcccHHHHHHHh
Confidence            346899999999999998875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=93.54  E-value=0.07  Score=50.16  Aligned_cols=20  Identities=20%  Similarity=0.419  Sum_probs=17.5

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|..+..
T Consensus        43 ~~~VLDiG~G~G~lt~~La~   62 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLP   62 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTT
T ss_pred             cCEEEEEcCcCcHHHHHHHh
Confidence            46899999999999998764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=93.10  E-value=0.48  Score=45.63  Aligned_cols=23  Identities=9%  Similarity=-0.016  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhccCCeE-EEEecC
Q 018119          195 ESFLLARAQELASGGLM-ALIVPC  217 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~l-vl~~~g  217 (360)
                      ..||+.-.+-|+|||++ ++.+..
T Consensus       257 ~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          257 RAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             HHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             HHHHHHHHHHcccCCeEEEEEEec
Confidence            56888888999999965 665543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=92.89  E-value=0.56  Score=46.36  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=18.3

Q ss_pred             HHHHHHHHHhccCCeEEEEec
Q 018119          196 SFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       196 ~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      .||++-.+-|+|||++++.++
T Consensus       288 ~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          288 NFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEEC
Confidence            588888889999999999884

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=92.66  E-value=0.18  Score=46.40  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=40.0

Q ss_pred             eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNAL  112 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~l  112 (360)
                      .-+|+|+|||+|..|..+..            .+++.++++...    .+.++++..|...-||..+
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGGS
T ss_pred             cCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHHh
Confidence            46899999999999999986            566666666543    2469999999988777653

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=92.64  E-value=0.21  Score=43.15  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=16.7

Q ss_pred             ceeEEeeecCCCCCccHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ..-+|+|+|||+|..++.+.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~   68 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGAL   68 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHH
T ss_pred             CcCEEEEeeCCCCHHHHHHH
Confidence            34689999999999887764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=92.43  E-value=0.78  Score=46.88  Aligned_cols=129  Identities=18%  Similarity=0.311  Sum_probs=64.9

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchH-----HHHhhCCCCCcceEeecCCcc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFN-----ALYKSLPSDRQYYAAGVPGSF  131 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn-----~lF~~l~~~~~~f~~gvpgSF  131 (360)
                      ...+|+|.+||+|...+.+...+.+            .+..+++-.|+-..=..     -+...+..  .-+-.-.+-++
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~------------~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~--~~~~I~~gDtL  286 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQ------------PQTVVYFGQELNTSTYNLARMNMILHGVPI--ENQFLHNADTL  286 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSC------------TTTCEEEEEESCHHHHHHHHHHHHHTTCCG--GGEEEEESCTT
T ss_pred             CCCEEeecccchhHHHHHHHHHHHh------------ccCceEEEEECcHHHHHHHHHHHHHcCCCc--CccceEeccee
Confidence            4679999999999988777664320            12355565555211111     01111110  00111111223


Q ss_pred             cc--ccCCCCceeEEEec--ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc-
Q 018119          132 HN--RLFPKASINFFHCS--YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA-  206 (360)
Q Consensus       132 y~--rlfP~~S~h~~~Ss--~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~-  206 (360)
                      ..  ..++...+|+|+++  |...|-.. .....+.....+  |.+     ++.        ...|+ .|+++-..-|+ 
T Consensus       287 ~~d~p~~~~~~fD~IvaNPPf~~~~~~~-~~~~~d~rf~~~--G~~-----~~~--------s~~~~-~Fl~~~l~~Lk~  349 (542)
T 3lkd_A          287 DEDWPTQEPTNFDGVLMNPPYSAKWSAS-SGFMDDPRFSPF--GKL-----APK--------SKADF-AFLLHGYYHLKQ  349 (542)
T ss_dssp             TSCSCCSSCCCBSEEEECCCTTCCCCCC-GGGGGSTTTGGG--SSC-----CCT--------TCCHH-HHHHHHHHTBCT
T ss_pred             cccccccccccccEEEecCCcCCccccc-hhhhhhhhhhhh--hhc-----CCC--------chhhH-HHHHHHHHHhCC
Confidence            32  23567899999998  55666221 111111100000  100     000        01133 58999999999 


Q ss_pred             cCCeEEEEec
Q 018119          207 SGGLMALIVP  216 (360)
Q Consensus       207 pGG~lvl~~~  216 (360)
                      |||++.++++
T Consensus       350 ~gGr~a~VlP  359 (542)
T 3lkd_A          350 DNGVMAIVLP  359 (542)
T ss_dssp             TTCEEEEEEE
T ss_pred             CceeEEEEec
Confidence            9999999885

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=91.91  E-value=0.34  Score=43.95  Aligned_cols=20  Identities=15%  Similarity=0.105  Sum_probs=17.9

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+||++|.-++.+..
T Consensus        16 g~~VlDIGtGsG~l~i~la~   35 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVE   35 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHH
Confidence            47999999999999998876

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=91.73  E-value=0.14  Score=52.52  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=18.6

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+.+|+|+|||.|..|..+..
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~   86 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLAS   86 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHh
Confidence            4578999999999998887765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=91.24  E-value=0.86  Score=42.53  Aligned_cols=20  Identities=10%  Similarity=0.061  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      --+|+|+|||+|+.|+.+..
T Consensus       126 g~~VlD~~aG~G~~~i~~a~  145 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAV  145 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHH
T ss_pred             CCEEEEecCcCcHHHHHHHH
Confidence            46899999999999998753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=90.87  E-value=0.94  Score=46.27  Aligned_cols=139  Identities=16%  Similarity=0.235  Sum_probs=67.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHH-------HHhhCCCCCcceEeecCCc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA-------LYKSLPSDRQYYAAGVPGS  130 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~-------lF~~l~~~~~~f~~gvpgS  130 (360)
                      ..+|+|.+||+|..-+.+...+.+.-..............+++-.|+-  ....       +...+.  .+ +-.-.+-+
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid--~~~~~lA~~Nl~l~gi~--~~-i~i~~gDt  319 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESN--PTTWKLAAMNMVIRGID--FN-FGKKNADS  319 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCC--HHHHHHHHHHHHHTTCC--CB-CCSSSCCT
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCC--HHHHHHHHHHHHHhCCC--cc-cceeccch
Confidence            349999999999877776655543221110000000013567777662  2211       111111  11 11123335


Q ss_pred             cccccCCCCceeEEEec--ccc-cccCCCCccccCCCCCCccCCc---eeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          131 FHNRLFPKASINFFHCS--YGL-QWLSSTPKELNDQNSPAYNKGR---IYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss--~al-HWLS~~P~~~~~~~~~~~nkg~---I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                      +....++...+|+|+++  |.. .|-..   .+...  +-|.-|.   .... .++. .       ..|+ .||++-..-
T Consensus       320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~---~~~~d--~r~~~g~~~~~~~~-~~~~-~-------~~~~-~Fl~~~l~~  384 (544)
T 3khk_A          320 FLDDQHPDLRADFVMTNPPFNMKDWWHE---KLADD--PRWTINTNGEKRIL-TPPT-G-------NANF-AWMLHMLYH  384 (544)
T ss_dssp             TTSCSCTTCCEEEEEECCCSSCCSCCCG---GGTTC--GGGEECCC--CEEC-CCCT-T-------CTHH-HHHHHHHHT
T ss_pred             hcCcccccccccEEEECCCcCCccccch---hhhhh--hhhhcCcccccccc-cCCC-c-------chhH-HHHHHHHHH
Confidence            55666788899999996  333 36332   11100  0000000   0000 0100 0       1122 589999999


Q ss_pred             hccCCeEEEEec
Q 018119          205 LASGGLMALIVP  216 (360)
Q Consensus       205 L~pGG~lvl~~~  216 (360)
                      |+|||+++++++
T Consensus       385 Lk~gGr~aiVlP  396 (544)
T 3khk_A          385 LAPTGSMALLLA  396 (544)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             hccCceEEEEec
Confidence            999999999974

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=90.42  E-value=0.91  Score=44.83  Aligned_cols=20  Identities=20%  Similarity=0.096  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus       291 ~~~VLDlgcG~G~~sl~la~  310 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAK  310 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHH
T ss_pred             CCEEEEeeccchHHHHHHHH
Confidence            35899999999999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=90.41  E-value=0.28  Score=45.19  Aligned_cols=19  Identities=11%  Similarity=0.128  Sum_probs=16.4

Q ss_pred             HHHHHHHHhccCCeEEEEe
Q 018119          197 FLLARAQELASGGLMALIV  215 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |++.-.+-|+|||+|++..
T Consensus       153 ~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          153 RIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             HHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEc
Confidence            7777788999999999874

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=90.35  E-value=0.59  Score=42.51  Aligned_cols=20  Identities=15%  Similarity=0.056  Sum_probs=18.0

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+||++|.-++.+..
T Consensus        22 g~~VlDIGtGsG~l~i~la~   41 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQ   41 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHH
Confidence            47999999999999998876

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=90.07  E-value=0.21  Score=46.79  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=16.6

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|||||.|..|..++.
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~   94 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAA   94 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHT
T ss_pred             CCEEEEecCCCCHHHHHHHH
Confidence            35899999999999887644

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=89.79  E-value=0.57  Score=44.51  Aligned_cols=17  Identities=24%  Similarity=0.303  Sum_probs=15.0

Q ss_pred             eeEEeeecCCCCCccHH
Q 018119           58 VFSIADLGCSVGPNTFN   74 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~   74 (360)
                      .-+|+|+|||+|..|+.
T Consensus       196 ~~~VLDlg~G~G~~~l~  212 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA  212 (336)
T ss_dssp             TCEEEETTCTTSHHHHH
T ss_pred             CCEEEEccCccCHHHHh
Confidence            46899999999998887

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=89.43  E-value=0.37  Score=44.84  Aligned_cols=47  Identities=13%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             EEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119           60 SIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA  111 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~  111 (360)
                      +|+|+|||+|..|..+.+            .+++.+++++.     ...++++..|.-.-||..
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-----~~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-----GLPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT-----TSSEEEEESCGGGSCGGG
T ss_pred             eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----CCCEEEEECChhhCChhh
Confidence            999999999999999887            45555555543     134788888876666544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=88.91  E-value=0.79  Score=44.20  Aligned_cols=20  Identities=20%  Similarity=0.122  Sum_probs=16.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..+|+|+|||+|..++.+..
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~  237 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELAL  237 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHH
T ss_pred             CCEEEEccCcCcHHHHHHHH
Confidence            46899999999998887754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=88.82  E-value=0.14  Score=46.49  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+|||+|..|..+.+
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~   50 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQ   50 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEEeCCchHHHHHHHH
Confidence            346899999999999998876

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=88.71  E-value=1.6  Score=42.84  Aligned_cols=20  Identities=25%  Similarity=0.291  Sum_probs=17.6

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|+.+..
T Consensus       287 ~~~VLDlgcG~G~~~~~la~  306 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLAT  306 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHh
Confidence            45899999999999998865

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=87.14  E-value=1.2  Score=41.51  Aligned_cols=50  Identities=14%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHH----------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQNI----------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY  113 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~i----------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF  113 (360)
                      .-+|+|+|||+|..|..+....                ++.++++.      .+.++++..|.-.-||..++
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~------~~~v~~i~~D~~~~~~~~~~  108 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF------GELLELHAGDALTFDFGSIA  108 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH------GGGEEEEESCGGGCCGGGGS
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc------CCCcEEEECChhcCChhHhc
Confidence            4689999999999999988643                23333331      24588999998887777654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=86.77  E-value=0.85  Score=41.85  Aligned_cols=21  Identities=33%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             ceeEEeeecCCCCCccHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-+|+|+||++|.-++.+..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~   41 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVK   41 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHH
Confidence            347999999999999998866

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=86.14  E-value=1.1  Score=40.92  Aligned_cols=51  Identities=12%  Similarity=0.170  Sum_probs=32.4

Q ss_pred             eeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY  113 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF  113 (360)
                      .-+|+|+|||+|..|. +-.             .+++.++++..    ..+.++++..|.-.-||..+|
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~----~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGCCHHHHH
T ss_pred             cCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhc----cCCceEEEECchhhCCHHHhh
Confidence            4589999999999999 421             11122222111    124588888888877777655

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=83.02  E-value=7.1  Score=41.98  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhccCCeEEEEec
Q 018119          194 IESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...|+++-.+-|+|||++++.++
T Consensus       444 y~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          444 EALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEC
Confidence            55689999999999999999985

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=80.64  E-value=0.7  Score=42.15  Aligned_cols=20  Identities=20%  Similarity=0.182  Sum_probs=17.7

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..|..+.+
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~   51 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQ   51 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTT
T ss_pred             cCEEEEEcCchHHHHHHHHH
Confidence            46899999999999998875

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=80.48  E-value=8.8  Score=38.93  Aligned_cols=24  Identities=8%  Similarity=-0.050  Sum_probs=19.5

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNII   80 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii   80 (360)
                      ...+|+|.+||+|...+.+...+.
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~  192 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVK  192 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHH
T ss_pred             CCCeEecCCcccchHHHHHHHHHH
Confidence            357999999999998887776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	1e-100

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  297 bits (763), Expect = e-100
 Identities = 116/342 (33%), Positives = 162/342 (47%), Gaps = 26/342 (7%)

Query: 11  MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
           M GG G+ SYA NS  Q   +   K I    I+          + +   +IADLGCS GP
Sbjct: 9   MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYS----GDTVTTRLAIADLGCSSGP 64

Query: 71  NTFNAVQNIIDSVKLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLPSDRQ----YYAA 125
           N   AV  +I +V+   +  G  +  E+Q+F NDL  NDFNA+++SLP +       +  
Sbjct: 65  NALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN 124

Query: 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG-PNEVVE 184
           GVPGSF+ RLFP+ +++F H SY L WLS  P  +        NKG IY +   P  V+ 
Sbjct: 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGI------ESNKGNIYMANTCPQSVLN 178

Query: 185 AYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMA 244
           AY  +  +    FL  RAQE+  GG M L +                   LL   L  M 
Sbjct: 179 AYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSED-RASTECCLIWQLLAMALNQMV 237

Query: 245 KMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPT--- 301
             GL+ E ++D FN+P Y P+P E++A + +  SF I+  E   +               
Sbjct: 238 SEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSV 297

Query: 302 ------VVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDES 337
                 V   +RA  E L+ +HFG  IIED+F R+   I E 
Sbjct: 298 EEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIER 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.16
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.11
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.11
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.07
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.06
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.03
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.02
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.99
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.97
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.96
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.95
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.89
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.88
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.85
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.83
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.8
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.65
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.6
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.59
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.55
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.53
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.5
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.44
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.38
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.29
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.22
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.15
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.08
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.08
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.06
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.05
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.04
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.85
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.75
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.72
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.71
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.68
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.62
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.62
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.58
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.44
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.4
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.22
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.21
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.18
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.12
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.07
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.86
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.79
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.4
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.4
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.36
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.87
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.73
d2h00a1	250	Methyltransferase 10 domain containing protein MET	94.71
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	93.53
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	92.95
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	92.44
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	91.77
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.67
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	89.52
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	88.36
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	86.5
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	85.44
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	82.72
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	82.49
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	81.39

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=8.5e-106  Score=786.15  Aligned_cols=341  Identities=34%  Similarity=0.561  Sum_probs=310.8

Q ss_pred             CCcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHH
Q 018119            4 ESVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSV   83 (360)
Q Consensus         4 ~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i   83 (360)
                      |.+++|||+||+|++||++||.+|++++.+++|+|++||.++++.. .   .+++++|||||||+||||+.+|+.||++|
T Consensus         2 ~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~-~---~~~~~~IADlGCS~G~Ntl~~v~~iI~~i   77 (359)
T d1m6ex_           2 DVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGD-T---VTTRLAIADLGCSSGPNALFAVTELIKTV   77 (359)
T ss_dssp             CCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSS-S---SSSEECCEEESCCSSTTTTTGGGTTHHHH
T ss_pred             CccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C---CCCceEEEEeCCCCCccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999965422 1   36799999999999999999999999999


Q ss_pred             HHHhhhcCC-CCccceEEecCCCCCchHHHHhhCCCC----CcceEeecCCccccccCCCCceeEEEecccccccCCCCc
Q 018119           84 KLKCQSYGH-DKLEFQVFFNDLVSNDFNALYKSLPSD----RQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPK  158 (360)
Q Consensus        84 ~~~~~~~~~-~~p~~~v~~nDlp~NDFn~lF~~l~~~----~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~  158 (360)
                      +++|++.+. ++|||||||||||+||||+||++||..    ++||++|||||||+||||++|+||+||++||||||++|+
T Consensus        78 ~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~  157 (359)
T d1m6ex_          78 EELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPI  157 (359)
T ss_dssp             HHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCS
T ss_pred             HHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCc
Confidence            999998765 478999999999999999999999863    469999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccCCceeecC-CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHH
Q 018119          159 ELNDQNSPAYNKGRIYYSR-GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLG  237 (360)
Q Consensus       159 ~~~~~~~~~~nkg~I~~~~-~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~  237 (360)
                      .+.+      |||+||+.+ ++++|.+||++||++||.+||++||+||+|||+||++++||++.++.+. +.+.+|++|.
T Consensus       158 ~l~~------n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~  230 (359)
T d1m6ex_         158 GIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLA  230 (359)
T ss_dssp             CCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHH
T ss_pred             cccC------CCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCC-ccchHHHHHH
Confidence            8864      788899885 6788999999999999999999999999999999999999999887653 5677899999


Q ss_pred             HHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccch-h----hh----cCCChhHHHHHHHH
Q 018119          238 DCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSA-Q----RQ----LATNTPTVVSHLRA  308 (360)
Q Consensus       238 ~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~-~----~~----~~~~~~~~~~~iRA  308 (360)
                      +||+|||+||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++.+. .    .+    ....++.+++++||
T Consensus       231 ~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA  310 (359)
T d1m6ex_         231 MALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRA  310 (359)
T ss_dssp             HHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeecccccccccccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875321 0    11    12357899999999


Q ss_pred             hhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119          309 NLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN  359 (360)
Q Consensus       309 ~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~  359 (360)
                      |+||+|++|||++|+|+||+||++++.+++++    ...++++++++|+||
T Consensus       311 ~~e~~l~~hfg~~i~D~lF~r~~~~v~~~~~~----~~~~~~~~~~sL~rK  357 (359)
T d1m6ex_         311 VAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK----EKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS----SCCEEEEEEEEEEBC
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHhhHhh----cCCceEEEEEEEEec
Confidence            99999999999999999999999999999975    468899999999998

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.16  E-value=2.2e-10  Score=101.40  Aligned_cols=152  Identities=14%  Similarity=0.176  Sum_probs=94.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|..|..+...            +     -+|.--|+-. ++=...+.    ....+--|..   ++.
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~------------~-----~~v~gvD~s~-~~i~~A~~~~~~~~~~~i~~~~---~d~   72 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPF------------V-----KKVVAFDLTE-DILKVARAFIEGNGHQQVEYVQ---GDA   72 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGG------------S-----SEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEE---CCC
T ss_pred             CCcCEEEEecccCcHHHHHHHHh------------C-----CEEEEEECCH-HHHhhhhhcccccccccccccc---ccc
Confidence            44679999999999888765321            1     2344445532 22222221    1111112333   346


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      ..--||++++|+|+|..++||+.+                                      ...+|+.-++-|+|||++
T Consensus        73 ~~l~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~l  114 (231)
T d1vl5a_          73 EQMPFTDERFHIVTCRIAAHHFPN--------------------------------------PASFVSEAYRVLKKGGQL  114 (231)
T ss_dssp             -CCCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             ccccccccccccccccccccccCC--------------------------------------HHHHHHHHHHhcCCCcEE
Confidence            665689999999999999999643                                      445788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ++.....++.         ..++.+...+......+          .  ....+.+++.+.+++.| |++++++.++
T Consensus       115 ~i~~~~~~~~---------~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~l~~aG-f~~~~~~~~~  169 (231)
T d1vl5a_         115 LLVDNSAPEN---------DAFDVFYNYVEKERDYS----------H--HRAWKKSDWLKMLEEAG-FELEELHCFH  169 (231)
T ss_dssp             EEEEEEBCSS---------HHHHHHHHHHHHHHCTT----------C--CCCCBHHHHHHHHHHHT-CEEEEEEEEE
T ss_pred             EEEeCCCCCC---------HHHHHHHHHHHhhcccC----------c--ccCCCHHHHHHHHHHCC-CEEEEEEEee
Confidence            9976554432         12344433332211111          1  23457899999999996 9998888764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.1e-09  Score=101.69  Aligned_cols=101  Identities=8%  Similarity=0.108  Sum_probs=66.0

Q ss_pred             CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ++++|.|+|..+++.+..                                    +++..||+.-++-|+|||++++...+
T Consensus       115 ~~~fD~i~si~~~eh~~~------------------------------------~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             CCCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ccchhhhhHhhHHHHhhh------------------------------------hhHHHHHHHHHhccCCCceEEEEEee
Confidence            468999999999988533                                    24778999999999999999998765


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ..+............++  ..-..+.          +..+.+|. +.||.+|+...++..| |+|...+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~--~~~~~df----------I~kyifPgg~lPS~~~l~~~~e~aG-f~v~~~~~~  216 (280)
T d2fk8a1         159 SYHPYEMAARGKKLSFE--TARFIKF----------IVTEIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL  216 (280)
T ss_dssp             CCCHHHHHTTCHHHHHH--HHHHHHH----------HHHHTSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred             ccCcchhhhcccccccc--cccccch----------hhhhccCCCcccchHhhhhhHHhhc-cccceeeec
Confidence            54321000000000000  0001111          13345665 5799999999999885 999888766

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=1.1e-09  Score=97.78  Aligned_cols=151  Identities=15%  Similarity=0.236  Sum_probs=88.7

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH----hhCCCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY----KSLPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF----~~l~~~~~~f~~gvpgSFy~  133 (360)
                      -.+|+|+|||+|..|..+.+..                 ..|.=-|+.. +.=...    +.....+.-|..+   ....
T Consensus        17 ~~rILDiGcGtG~~~~~la~~~-----------------~~v~gvD~S~-~~l~~A~~~~~~~~~~~~~~~~~---d~~~   75 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPYV-----------------QECIGVDATK-EMVEVASSFAQEKGVENVRFQQG---TAES   75 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS-----------------SEEEEEESCH-HHHHHHHHHHHHHTCCSEEEEEC---BTTB
T ss_pred             CCEEEEeCCcCcHHHHHHHHhC-----------------CeEEEEeCCh-hhhhhhhhhhccccccccccccc---cccc
Confidence            4689999999999888774410                 1122222221 000011    1100111223333   2344


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --||++++|+|+|+.++||+.+                                      ...+|+.-.+-|+|||++++
T Consensus        76 ~~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~~~~  117 (234)
T d1xxla_          76 LPFPDDSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRFLL  117 (234)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccceeeeeceeecccC--------------------------------------HHHHHHHHHHeeCCCcEEEE
Confidence            4578999999999999999543                                      34578888899999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEecc
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL  289 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~  289 (360)
                      .....++.         ..++.+.+.+......            ......+.+++..+++.. +|.+..++.+..
T Consensus       118 ~~~~~~~~---------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-gf~~~~~~~~~~  171 (234)
T d1xxla_         118 VDHYAPED---------PVLDEFVNHLNRLRDP------------SHVRESSLSEWQAMFSAN-QLAYQDIQKWNL  171 (234)
T ss_dssp             EEECBCSS---------HHHHHHHHHHHHHHCT------------TCCCCCBHHHHHHHHHHT-TEEEEEEEEEEE
T ss_pred             EEcCCCCC---------HHHHHHHHHHHhhCCC------------cccccCCHHHHHHHHHHC-CCceeEEEEeeC
Confidence            76554432         1122222222211111            112234788999999998 499998887643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=2.2e-08  Score=93.26  Aligned_cols=110  Identities=12%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      +|++++|.|+|--++..+.......          |                   .+-+..|++.-++=|+|||+|++..
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~----------~-------------------~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDA----------G-------------------FERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCC----------S-------------------TTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhh----------H-------------------HHHHHHHHHHHHHhCCCCCceEEEE
Confidence            4668999999999996644322111          0                   1347789999999999999999998


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      .+.++................ . ..+..          ..+.+|- +.||.+|+...+++. +|+|++.+.+
T Consensus       173 i~~~~~~~~~~~~~~~p~~~~-~-~~~fi----------~kyiFpgg~lps~~~~~~~~e~~-gl~v~~~~~~  232 (291)
T d1kpia_         173 ITIPDKEEAQELGLTSPMSLL-R-FIKFI----------LTEIFPGGRLPRISQVDYYSSNA-GWKVERYHRI  232 (291)
T ss_dssp             EECCCHHHHHHHTCCCCHHHH-H-HHHHH----------HHHTCTTCCCCCHHHHHHHHHHH-TCEEEEEEEC
T ss_pred             EeccCcchhhhccCCCchhhc-c-cchHH----------HHHhcCCCCCCCHHHHHhhhccc-ccccceeeec
Confidence            877643100000000000000 0 00111          1233453 679999999999988 4999999877

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.6e-10  Score=101.41  Aligned_cols=158  Identities=14%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcc-e-EeecCC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQY-Y-AAGVPG  129 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~-f-~~gvpg  129 (360)
                      +..++|+|+|||+|..|..++..+..    ++     +...+.+.--|. +-.+-..++.    .+....+ | ....+.
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~----~~-----~~~~~~~~~vD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  108 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQA----QY-----PGVCINNEVVEP-SAEQIAKYKELVAKISNLENVKFAWHKETS  108 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHH----HS-----TTCEEEEEEECC-CHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhh----hc-----cCCceEEEEEeC-cHHHHHHHHHHHhhccccccccccchhhhh
Confidence            55789999999999988877665542    22     122355556663 2333333332    2211111 1 111111


Q ss_pred             ----ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119          130 ----SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL  205 (360)
Q Consensus       130 ----SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  205 (360)
                          +.....+|++++|+|+|+.+|||+.+                                      ...+|+.-.+-|
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--------------------------------------~~~~l~~l~~~L  150 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKD--------------------------------------IPATLKFFHSLL  150 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHTE
T ss_pred             hhhcchhcccCCCCceeEEEEccceecCCC--------------------------------------HHHHHHHHHhhC
Confidence                11235678899999999999999543                                      445788888999


Q ss_pred             ccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119          206 ASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF  284 (360)
Q Consensus       206 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~  284 (360)
                      +|||.|+++....+.          ...++    +..+...- .     +..  ...+++.+++..++++.| |.....
T Consensus       151 kpgG~l~i~~~~~~~----------~~~~l----~~~~~~~~-~-----~~~--~~~~~~~~~~~~~L~~~G-~~~~~~  206 (280)
T d1jqea_         151 GTNAKMLIIVVSGSS----------GWDKL----WKKYGSRF-P-----QDD--LCQYITSDDLTQMLDNLG-LKYECY  206 (280)
T ss_dssp             EEEEEEEEEEECTTS----------HHHHH----HHHHGGGS-C-----CCT--TSCCCCHHHHHHHHHHHT-CCEEEE
T ss_pred             CCCCEEEEEEecCcc----------hHHHH----HHHHHHhc-C-----CCc--ccccCCHHHHHHHHHHCC-CceEEE
Confidence            999999998754321          11222    22222211 1     011  122567899999999985 665443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.03  E-value=2.7e-08  Score=91.02  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=88.7

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC----CCCcc-eEeecCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP----SDRQY-YAAGVPGS  130 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~----~~~~~-f~~gvpgS  130 (360)
                      +...+|+|+|||+|..++.+.+        ++        ..+|.--|+.. ..-...+...    -..++ |..   ++
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~--------~~--------~~~v~gvD~s~-~~i~~a~~~~~~~gl~~~v~~~~---~d  125 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVR--------KF--------GVSIDCLNIAP-VQNKRNEEYNNQAGLADNITVKY---GS  125 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH--------HH--------CCEEEEEESCH-HHHHHHHHHHHHHTCTTTEEEEE---CC
T ss_pred             CCCCEEEEeCCCCcHHHhhhhc--------cC--------CcEEEEEeccc-hhhhhhhcccccccccccccccc---cc
Confidence            3457999999999987666532        11        13444555421 1111222110    01122 333   44


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +.+--||++++|+|+|..++||+..                                      ...+|+.-.+-|+|||+
T Consensus       126 ~~~l~~~~~sfD~V~~~~~l~h~~d--------------------------------------~~~~l~~~~~~LkpgG~  167 (282)
T d2o57a1         126 FLEIPCEDNSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGV  167 (282)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEE
T ss_pred             cccccccccccchhhccchhhhccC--------------------------------------HHHHHHHHHHhcCCCcE
Confidence            6666789999999999999999532                                      34577788899999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      |++.-.........     ..+ ..+   +..              ..+| ..++.+++.+++++.| |+....+..
T Consensus       168 l~~~~~~~~~~~~~-----~~~-~~~---~~~--------------~~~~-~~~s~~~~~~~l~~~G-f~~i~~~d~  219 (282)
T d2o57a1         168 MAITDPMKEDGIDK-----SSI-QPI---LDR--------------IKLH-DMGSLGLYRSLAKECG-LVTLRTFSR  219 (282)
T ss_dssp             EEEEEEEECTTCCG-----GGG-HHH---HHH--------------HTCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEEEeecCCCCch-----hHH-HHH---HHH--------------hccC-CCCCHHHHHHHHHHcC-CceEEEEEC
Confidence            99985544332111     111 111   111              1112 2468899999999995 876665543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-09  Score=98.25  Aligned_cols=168  Identities=11%  Similarity=-0.007  Sum_probs=103.6

Q ss_pred             CceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCc--cceEEecCCCC--CchHHHHhhCCC
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKL--EFQVFFNDLVS--NDFNALYKSLPS  118 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p--~~~v~~nDlp~--NDFn~lF~~l~~  118 (360)
                      .+..+|+|+|||+|..++.+.+             ..|+..+++.........  ...-+..|+-.  ++...+-..+..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            5578999999999999876643             445555554433211000  00000111110  000000000000


Q ss_pred             -CCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHH
Q 018119          119 -DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESF  197 (360)
Q Consensus       119 -~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~F  197 (360)
                       -.......+........+|.+++|+++|..+|||+...+                                  .|+..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~----------------------------------~~~~~~  175 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL----------------------------------DAYRAA  175 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH----------------------------------HHHHHH
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccH----------------------------------HHHHHH
Confidence             011233445556666788999999999999999975421                                  367789


Q ss_pred             HHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCC
Q 018119          198 LLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNA  277 (360)
Q Consensus       198 L~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g  277 (360)
                      |+..++-|+|||.|++......+..                              .......+.++.+.++++++++.+|
T Consensus       176 l~~i~~~LkpGG~li~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~aG  225 (257)
T d2a14a1         176 LCNLASLLKPGGHLVTTVTLRLPSY------------------------------MVGKREFSCVALEKGEVEQAVLDAG  225 (257)
T ss_dssp             HHHHHTTEEEEEEEEEEEESSCCEE------------------------------EETTEEEECCCCCHHHHHHHHHHTT
T ss_pred             HHHHHhccCCCcEEEEEEecccccc------------------------------eeccccccccCCCHHHHHHHHHHCC
Confidence            9999999999999999876543220                              0112345677889999999999995


Q ss_pred             ceeEEEEEEec
Q 018119          278 SFSIEKFEPLA  288 (360)
Q Consensus       278 ~F~I~~~e~~~  288 (360)
                       |+|..++...
T Consensus       226 -f~v~~~~~~~  235 (257)
T d2a14a1         226 -FDIEQLLHSP  235 (257)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -CEEEEEEEec
Confidence             9999998664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=6.2e-10  Score=97.45  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--C-CCcceEeecCCccccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--S-DRQYYAAGVPGSFHNR  134 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~-~~~~f~~gvpgSFy~r  134 (360)
                      .-+|+|+|||+|..|..+.+        .         -.+|+-.|+. -+.-...+...  . ...-++.+   ...+-
T Consensus        38 ~~~ILDiGcG~G~~~~~la~--------~---------~~~v~giD~S-~~~i~~ak~~~~~~~~~~~~~~~---d~~~l   96 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLED--------Y---------GFEVVGVDIS-EDMIRKAREYAKSRESNVEFIVG---DARKL   96 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESC-HHHHHHHHHHHHHTTCCCEEEEC---CTTSC
T ss_pred             CCEEEEECCCcchhhhhHhh--------h---------hccccccccc-ccchhhhhhhhcccccccccccc---ccccc
Confidence            36899999999998876642        1         1455666653 23333333211  0 11123333   34445


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      -+|++++|+|+|+.++||++.                                    .|+..+|+.-++-|+|||++++.
T Consensus        97 ~~~~~~fD~I~~~~~l~~~~~------------------------------------~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1          97 SFEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             CSCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCcCceEEEEecchhhCCh------------------------------------hHHHHHHHHHHHHcCcCcEEEEE
Confidence            588999999999999999632                                    25777899999999999999998


Q ss_pred             ecC
Q 018119          215 VPC  217 (360)
Q Consensus       215 ~~g  217 (360)
                      +..
T Consensus       141 ~~~  143 (226)
T d1ve3a1         141 FTD  143 (226)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.97  E-value=9e-10  Score=100.47  Aligned_cols=144  Identities=15%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CCCCc-ceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PSDRQ-YYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~~~~-~f~~gvpgSFy~  133 (360)
                      .+.-+|+|+|||+|..|..++...-                -+|..-|.- -.|=...+.. ...+. -|..   +++..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~----------------~~v~~vD~s-~~~l~~a~~~~~~~~~~~~~~---~d~~~  151 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY----------------ATTDLLEPV-KHMLEEAKRELAGMPVGKFIL---ASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC----------------SEEEEEESC-HHHHHHHHHHTTTSSEEEEEE---SCGGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC----------------ceEEEEcCC-HHHHHhhhccccccccceeEE---ccccc
Confidence            4578999999999999877644211                123333432 2232223221 11111 1222   23444


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      --+|++++|+|+|..++||+..                                    .|+..||+.-++-|+|||++++
T Consensus       152 ~~~~~~~fD~I~~~~vl~hl~d------------------------------------~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         152 ATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             CCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCccceEEeeccccccch------------------------------------hhhHHHHHHHHHhcCCCcEEEE
Confidence            4567899999999999999643                                    2567789999999999999998


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      .-........        .                     .+. .-+.++++.++++++++++| |+|.+.+.
T Consensus       196 ~e~~~~~~~~--------~---------------------~d~-~d~~~~rs~~~~~~l~~~aG-f~ii~~~~  237 (254)
T d1xtpa_         196 KENCSTGDRF--------L---------------------VDK-EDSSLTRSDIHYKRLFNESG-VRVVKEAF  237 (254)
T ss_dssp             EEEBC--CCE--------E---------------------EET-TTTEEEBCHHHHHHHHHHHT-CCEEEEEE
T ss_pred             EecCCCCCcc--------e---------------------ecc-cCCceeCCHHHHHHHHHHcC-CEEEEEEe
Confidence            7533221100        0                     011 12445789999999999995 98877654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=8.4e-08  Score=88.90  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=91.2

Q ss_pred             eeEEeeecCCCCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119           58 VFSIADLGCSVGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA  124 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~  124 (360)
                      --+|+|+|||.|..++.+...-             ++..+++....+. ...+.+.+-|..         .         
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-~~~v~~~~~d~~---------~---------  123 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-LRSKRVLLAGWE---------Q---------  123 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-CSCEEEEESCGG---------G---------
T ss_pred             CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-hhhhHHHHhhhh---------c---------
Confidence            4899999999999998876622             3333444333322 223555555531         1         


Q ss_pred             eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119          125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE  204 (360)
Q Consensus       125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E  204 (360)
                                 + +.++|-++|-.++..+..                                    +.+..|++...+-
T Consensus       124 -----------~-~~~fD~i~si~~~eh~~~------------------------------------~~~~~~~~~~~r~  155 (285)
T d1kpga_         124 -----------F-DEPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRL  155 (285)
T ss_dssp             -----------C-CCCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHH
T ss_pred             -----------c-cccccceeeehhhhhcCc------------------------------------hhHHHHHHHHHhh
Confidence                       1 257899999999888433                                    2366799999999


Q ss_pred             hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEEE
Q 018119          205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIEK  283 (360)
Q Consensus       205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~~  283 (360)
                      |+|||+|++...+..............- ....... +..          ....+| -+.||.+++...++..| |+|+.
T Consensus       156 LkpgG~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~-~fi----------~kyiFpgg~lPsl~~~~~~~e~ag-f~v~~  222 (285)
T d1kpga_         156 LPADGVMLLHTITGLHPKEIHERGLPMS-FTFARFL-KFI----------VTEIFPGGRLPSIPMVQECASANG-FTVTR  222 (285)
T ss_dssp             SCTTCEEEEEEEEECCHHHHTTTTCSCH-HHHHHHH-HHH----------HHHTSTTCCCCCHHHHHHHHHTTT-CEEEE
T ss_pred             cCCCCcEEEEEEeccCchhhccccCCcc-hhhhchh-hHH----------HHHhccCCCCCChhhHHHHHHHhc-hhhcc
Confidence            9999999998776432100000000000 1111111 111          112233 24689999999999885 99988


Q ss_pred             EEEe
Q 018119          284 FEPL  287 (360)
Q Consensus       284 ~e~~  287 (360)
                      .+.+
T Consensus       223 ~~~~  226 (285)
T d1kpga_         223 VQSL  226 (285)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            8776

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.95  E-value=6.7e-09  Score=92.01  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCcccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSFy~  133 (360)
                      .-+|+|+|||+|..|+.+....             ..|..+|+--|+.. +.=...+..    .....+...  -+.+. 
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~-------------~~~~~~v~giD~S~-~ml~~A~~~~~~~~~~~~~~~~--~~d~~-  102 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEIL--CNDIR-  102 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTC-------------CCSSCEEEEECSCH-HHHHHHHHHHHTSCCSSCEEEE--CSCTT-
T ss_pred             CCEEEEeccchhhHHHHHHHhh-------------cCCCCceEEeCCCH-HHHHHHHHHhHhhcccchhhhc--cchhh-
Confidence            4689999999999987765321             12456666666642 333333321    111111111  12222 


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                       =+|....|+++|++++||++.                                    .|...+|+.-.+-|+|||.|++
T Consensus       103 -~~~~~~~d~i~~~~~l~~~~~------------------------------------~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         103 -HVEIKNASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -TCCCCSEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             -ccccccceeeEEeeeccccCh------------------------------------hhHHHHHHHHHHhCCCCceeec
Confidence             245668899999999999653                                    2566789999999999999999


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhc----ccCCCcccCCHHHHHHHHHhCCcee
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVD----SFNLPSYFPTPQELKALLKRNASFS  280 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d----~f~~P~y~ps~eE~~~~ie~~g~F~  280 (360)
                      .-..+.+..        ..-..+...+..+....-.++.+..    .+..-.+..+.+|+..++++.| |+
T Consensus       146 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aG-F~  207 (225)
T d1im8a_         146 SEKFRFEDT--------KINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVG-FS  207 (225)
T ss_dssp             EEECCCSSH--------HHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHT-CS
T ss_pred             ccccccccc--------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcC-CC
Confidence            754444321        0112333344444333323333222    1122234568999999999995 86

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1e-09  Score=97.40  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=92.3

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNR  134 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~r  134 (360)
                      .+.-+|+|+|||+|..+..+++.               .+ -+|.--|+.. ..=...+. ++....-.+.-+.+++.+-
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~---------------~~-~~v~~vD~s~-~~l~~ak~~~~~~~~~~~~f~~~d~~~~  121 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLP---------------LF-REVDMVDITE-DFLVQAKTYLGEEGKRVRNYFCCGLQDF  121 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTT---------------TC-SEEEEEESCH-HHHHHHHHHTGGGGGGEEEEEECCGGGC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHh---------------cC-CEEEEeecCH-HHhhcccccccccccccccccccccccc
Confidence            44679999999999988766321               01 2455555532 11111121 1111011112233457777


Q ss_pred             cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .+|++++|+|+|..++|++..                                    .|+..+|+.-++-|+|||.+++.
T Consensus       122 ~~~~~~fD~I~~~~~l~h~~~------------------------------------~~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         122 TPEPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             CCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccccccccccchh------------------------------------hhhhhHHHHHHHhcCCcceEEEE
Confidence            788999999999999999643                                    13556788888999999999998


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      .....+...                              ++ ..-..+.++.+++++++++.| |+|.+.+.
T Consensus       166 ~~~~~~~~~------------------------------~~-~~~~~~~~~~~~~~~l~~~aG-f~ii~~~~  205 (222)
T d2ex4a1         166 DNMAQEGVI------------------------------LD-DVDSSVCRDLDVVRRIICSAG-LSLLAEER  205 (222)
T ss_dssp             EEEBSSSEE------------------------------EE-TTTTEEEEBHHHHHHHHHHTT-CCEEEEEE
T ss_pred             Ecccccccc------------------------------cc-cCCceeeCCHHHHHHHHHHcC-CEEEEEEE
Confidence            543322100                              00 011345679999999999995 99887765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=7.4e-09  Score=90.15  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=64.1

Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +-.--+|++++|+|+|+.+|||+..                                      +..+|+.-++-|+|||+
T Consensus        82 ~~~l~~~~~~fD~I~~~~~l~h~~d--------------------------------------~~~~l~~~~~~L~pgG~  123 (208)
T d1vlma_          82 AENLPLKDESFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGGY  123 (208)
T ss_dssp             TTBCCSCTTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEEE
T ss_pred             ccccccccccccccccccccccccc--------------------------------------cccchhhhhhcCCCCce
Confidence            4445578899999999999999643                                      34477788889999999


Q ss_pred             EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119          211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP  286 (360)
Q Consensus       211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~  286 (360)
                      |++..+...+.          .....        .....    ...+.--.+++|.+|+..++++.| |++.++..
T Consensus       124 l~i~~~~~~~~----------~~~~~--------~~~~~----~~~~~~~~~~~s~~~l~~~l~~~G-f~~i~v~~  176 (208)
T d1vlma_         124 LIVGIVDRESF----------LGREY--------EKNKE----KSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQ  176 (208)
T ss_dssp             EEEEEECSSSH----------HHHHH--------HHTTT----C-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred             EEEEecCCcch----------hHHhh--------hhccc----cccccccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence            99998654321          10111        11111    112223345789999999999995 98766553

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.8e-08  Score=89.04  Aligned_cols=146  Identities=16%  Similarity=0.095  Sum_probs=89.3

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCC-CCcceEeecCCccc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPS-DRQYYAAGVPGSFH  132 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~-~~~~f~~gvpgSFy  132 (360)
                      .-+|+|+|||+|..++.+.+        ++        ..+|+=-|+-. ++-.+.+.    ... ++--|..+   ++.
T Consensus        34 g~~VLDiGCG~G~~~~~la~--------~~--------~~~v~GvD~s~-~~~~~ar~~~~~~gl~~~v~~~~~---d~~   93 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWAR--------DH--------GITGTGIDMSS-LFTAQAKRRAEELGVSERVHFIHN---DAA   93 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHH--------HT--------CCEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEES---CCT
T ss_pred             CCEEEEEcCCCCHHHHHHHH--------hc--------CCEEEEEeccc-chhhHHHHHHHHhhccccchhhhh---HHh
Confidence            36899999999987765422        11        14455555532 22222222    111 11224443   444


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      . ++|++++|+|+|..++||+..                                      +..+|+.-.+-|+|||+++
T Consensus        94 ~-~~~~~~fD~v~~~~~~~~~~d--------------------------------------~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          94 G-YVANEKCDVAACVGATWIAGG--------------------------------------FAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             T-CCCSSCEEEEEEESCGGGTSS--------------------------------------SHHHHHHHTTSEEEEEEEE
T ss_pred             h-ccccCceeEEEEEehhhccCC--------------------------------------HHHHHHHHHHHcCcCcEEE
Confidence            4 578999999999999999654                                      3346777789999999999


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      +...+...... .        +.+...|.               ..-+.-+.+..++...+++.| |++...+..
T Consensus       135 i~~~~~~~~~~-~--------~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~aG-~~~v~~~~~  184 (245)
T d1nkva_         135 IGEPYWRQLPA-T--------EEIAQACG---------------VSSTSDFLTLPGLVGAFDDLG-YDVVEMVLA  184 (245)
T ss_dssp             EEEEEETTCCS-S--------HHHHHTTT---------------CSCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred             EEeccccCCCC-h--------HHHHHHhc---------------cCCCcccCCHHHHHHHHHHcC-CEEEEEEeC
Confidence            98776544311 0        22222221               011222568889999999985 888776655

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.7e-09  Score=93.69  Aligned_cols=96  Identities=14%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             CCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 018119          128 PGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELAS  207 (360)
Q Consensus       128 pgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  207 (360)
                      ++.+...-++..++|+|.|+++|||++..+                                  .|+..+|+.-++-|||
T Consensus       145 ~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~----------------------------------~~~~~~l~~~~~~LkP  190 (263)
T d2g72a1         145 PQPLGAGSPAPLPADALVSAFCLEAVSPDL----------------------------------ASFQRALDHITTLLRP  190 (263)
T ss_dssp             SSTTCSSCSSCSSEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEE
T ss_pred             CCccccCCcCcCccCeeeeHHHHHHHccCH----------------------------------HHHHHHHHHHHHHcCC
Confidence            455666667788999999999999976522                                  2577789999999999


Q ss_pred             CCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          208 GGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       208 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ||.||+......+..                              .+..-.++.|+.+.+|++++++..| |+|..++..
T Consensus       191 GG~li~~~~~~~~~~------------------------------~~~~~~~~~~~~t~e~v~~~l~~aG-f~v~~~~~~  239 (263)
T d2g72a1         191 GGHLLLIGALEESWY------------------------------LAGEARLTVVPVSEEEVREALVRSG-YKVRDLRTY  239 (263)
T ss_dssp             EEEEEEEEEESCCEE------------------------------EETTEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             CCEEEEecccCCccc------------------------------ccCCcccccCCCCHHHHHHHHHHCC-CeEEEEEEe
Confidence            999998865433210                              0111234667889999999999996 999998876


Q ss_pred             c
Q 018119          288 A  288 (360)
Q Consensus       288 ~  288 (360)
                      .
T Consensus       240 ~  240 (263)
T d2g72a1         240 I  240 (263)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.83  E-value=3.5e-08  Score=89.26  Aligned_cols=157  Identities=15%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCC-CCcceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPS-DRQYYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~-~~~~f~~gvpgSFy~  133 (360)
                      .+.-+|+|+|||+|..++.+.+        +       .|..++..-|+|.  --...+ .+.. ...--+.-++|.|+.
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~--------~-------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~rv~~~~~D~~~  141 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEMAG--TVDTARSYLKDEGLSDRVDVVEGDFFE  141 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECTT--HHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             ccCCEEEEeCCCCCHHHHHHHH--------h-------cceeEEEEccCHH--HHHHHHHHHHHhhcccchhhccccchh
Confidence            4456999999999998877643        2       2668888889874  111111 1111 001113345567876


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      . .| .++|+++++++||.++.                                    .+...+|+.-++-|+|||++++
T Consensus       142 ~-~~-~~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkPGG~l~i  183 (253)
T d1tw3a2         142 P-LP-RKADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRILI  183 (253)
T ss_dssp             C-CS-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEEE
T ss_pred             h-cc-cchhheeeccccccCCc------------------------------------hhhHHHHHHHHHhcCCCcEEEE
Confidence            3 44 47999999999997432                                    1234578888899999999988


Q ss_pred             EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      .=..........     .....+.  +.-|+.-|-             ..+|.+|+++++++.| |++.++..+.
T Consensus       184 ~e~~~~~~~~~~-----~~~~~~d--l~~~~~~~g-------------~~rt~~e~~~ll~~AG-f~~~~v~~~~  237 (253)
T d1tw3a2         184 HERDDLHENSFN-----EQFTELD--LRMLVFLGG-------------ALRTREKWDGLAASAG-LVVEEVRQLP  237 (253)
T ss_dssp             EECCBCGGGCCS-----HHHHHHH--HHHHHHHSC-------------CCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EeccCCCCCcch-----hHHHHhh--HHHHhhCCC-------------cCCCHHHHHHHHHHCC-CeEEEEEECC
Confidence            643222211100     1111111  222232221             2478999999999996 9998887764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.80  E-value=4.2e-08  Score=83.25  Aligned_cols=144  Identities=8%  Similarity=-0.011  Sum_probs=87.2

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      +..-+|+|+|||+|.++..+.+            ..|+..+++.++..     ...-.-|+.  .++       ....-|
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~-----~~~~~~~~~--~~~-------~~~~~~   84 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQP-----HITSQGDFK--VYA-------APGIEI   84 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCS-----EEEEETTEE--EEE-------CSSSEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhcccc-----chhhhhhhh--hcc-------ccccce
Confidence            4457999999999999998876            44544444432211     000000000  000       000012


Q ss_pred             EeecCCcccc-ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          124 AAGVPGSFHN-RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       124 ~~gvpgSFy~-rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                      ..+   ++.. ...+..++|+++|+.++||+..                                    .++..+++.-+
T Consensus        85 ~~~---d~~~l~~~~~~~~D~i~~~~~l~~l~~------------------------------------~~~~~~~~~i~  125 (201)
T d1pjza_          85 WCG---DFFALTARDIGHCAAFYDRAAMIALPA------------------------------------DMRERYVQHLE  125 (201)
T ss_dssp             EEE---CCSSSTHHHHHSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred             ecc---cccccccccccceeEEEEEeeeEecch------------------------------------hhhHHHHHHHH
Confidence            111   1221 2244568999999999999554                                    24566788889


Q ss_pred             HHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119          203 QELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       203 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      +-|+|||++++.........                                  ..-|.|..+.+|+++++. . .|+|.
T Consensus       126 ~~LkpgG~l~l~~~~~~~~~----------------------------------~~~p~~~~~~~el~~l~~-~-~~~i~  169 (201)
T d1pjza_         126 ALMPQACSGLLITLEYDQAL----------------------------------LEGPPFSVPQTWLHRVMS-G-NWEVT  169 (201)
T ss_dssp             HHSCSEEEEEEEEESSCSSS----------------------------------SSSCCCCCCHHHHHHTSC-S-SEEEE
T ss_pred             HhcCCCcEEEEEEccccccc----------------------------------CCCccccCCHHHHHHHhC-C-CcEEE
Confidence            99999999988876554321                                  112666778899988775 3 48888


Q ss_pred             EEEEec
Q 018119          283 KFEPLA  288 (360)
Q Consensus       283 ~~e~~~  288 (360)
                      .++..+
T Consensus       170 ~~~~~~  175 (201)
T d1pjza_         170 KVGGQD  175 (201)
T ss_dssp             EEEESS
T ss_pred             EEEEec
Confidence            877653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-07  Score=83.99  Aligned_cols=149  Identities=9%  Similarity=-0.033  Sum_probs=89.6

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      +..-+|+|+|||.|.+++.+.+            ..|+..+++....    + ....+..++.+++..   ... .+.-|
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~----~-~~~~~~~~~~~~~~~---~~~-~~v~~  114 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS----Y-SEEPITEIPGTKVFK---SSS-GNISL  114 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC----E-EEEECTTSTTCEEEE---ETT-SSEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc----c-cccchhcccccceee---ecC-CcEEE
Confidence            3456999999999999999977            3444333332211    1 111111121111110   000 00011


Q ss_pred             EeecCCcccc-ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          124 AAGVPGSFHN-RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       124 ~~gvpgSFy~-rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                      ..+   .++. ...+..++|++++..++|.+..   .                                 +...+++.-+
T Consensus       115 ~~~---d~~~l~~~~~~~fd~i~~~~~l~~~~~---~---------------------------------~r~~~~~~~~  155 (229)
T d2bzga1         115 YCC---SIFDLPRTNIGKFDMIWDRGALVAINP---G---------------------------------DRKCYADTMF  155 (229)
T ss_dssp             EES---CGGGGGGSCCCCEEEEEESSSTTTSCG---G---------------------------------GHHHHHHHHH
T ss_pred             EEc---chhhccccccCceeEEEEEEEEEeccc---h---------------------------------hhHHHHHHHH
Confidence            111   2222 3467789999999999999532   1                                 3445677778


Q ss_pred             HHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119          203 QELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE  282 (360)
Q Consensus       203 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~  282 (360)
                      +-|+|||++++.....+...                                  ..-|.|..+.+|+++++..  .|+|+
T Consensus       156 ~~LkpgG~~~l~~~~~~~~~----------------------------------~~gpp~~~~~~el~~lf~~--~~~i~  199 (229)
T d2bzga1         156 SLLGKKFQYLLCVLSYDPTK----------------------------------HPGPPFYVPHAEIERLFGK--ICNIR  199 (229)
T ss_dssp             HTEEEEEEEEEEEEECCTTT----------------------------------CCCSSCCCCHHHHHHHHTT--TEEEE
T ss_pred             hhcCCcceEEEEEcccCCCC----------------------------------CCCCCCCCCHHHHHHHhcC--CCEEE
Confidence            99999999998876654221                                  1125577899999999964  49999


Q ss_pred             EEEEec
Q 018119          283 KFEPLA  288 (360)
Q Consensus       283 ~~e~~~  288 (360)
                      .+|..+
T Consensus       200 ~le~~~  205 (229)
T d2bzga1         200 CLEKVD  205 (229)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.65  E-value=5.2e-08  Score=84.49  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=64.3

Q ss_pred             eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEee
Q 018119           59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG  126 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~g  126 (360)
                      -+|+|+|||+|.+++.+.+            ..++.+++.....+  .+.+++...|+.                     
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~d~~---------------------   88 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEG--LDNLQTDLVDLN---------------------   88 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CTTEEEEECCTT---------------------
T ss_pred             CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc--ccchhhhheecc---------------------
Confidence            3899999999999998865            33333333333221  122444444442                     


Q ss_pred             cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119          127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA  206 (360)
Q Consensus       127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  206 (360)
                             .+.|++++|+|+|+.++|++..                                    .++..+|+.-++-|+
T Consensus        89 -------~~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~  125 (198)
T d2i6ga1          89 -------TLTFDGEYDFILSTVVMMFLEA------------------------------------QTIPGLIANMQRCTK  125 (198)
T ss_dssp             -------TCCCCCCEEEEEEESCGGGSCT------------------------------------THHHHHHHHHHHTEE
T ss_pred             -------cccccccccEEEEeeeeecCCH------------------------------------HHHHHHHHHHHHHcC
Confidence                   3345689999999999999533                                    135668888899999


Q ss_pred             cCCeEEEEecC
Q 018119          207 SGGLMALIVPC  217 (360)
Q Consensus       207 pGG~lvl~~~g  217 (360)
                      |||++++....
T Consensus       126 pgG~~~~~~~~  136 (198)
T d2i6ga1         126 PGGYNLIVAAM  136 (198)
T ss_dssp             EEEEEEEEEEB
T ss_pred             CCcEEEEEEec
Confidence            99999997654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.60  E-value=1.6e-07  Score=85.21  Aligned_cols=156  Identities=16%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh----hCCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK----SLPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~----~l~~~~~~f~~gvpgSF  131 (360)
                      ++.-+|+|+|||+|..+..+.+        +       .|..++..-|+|.  .-...+    .......  +.-++|.|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~P~~~~~~~Dlp~--~~~~a~~~~~~~~~~~r--i~~~~~d~  140 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIAL--------R-------APHLRGTLVELAG--PAERARRRFADAGLADR--VTVAEGDF  140 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTT--EEEEECCT
T ss_pred             ccCCEEEEECCCCCHHHHHHHH--------h-------hcCcEEEEecChH--HHHHHHHHHhhcCCcce--eeeeeeec
Confidence            3456899999999976666532        2       2678888899984  222222    2221222  33345678


Q ss_pred             ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119          132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM  211 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  211 (360)
                      +.. +|. +.|++++.+.||-++.                                    ++...+|+.-++-|+|||++
T Consensus       141 ~~~-~p~-~~D~v~~~~vLh~~~d------------------------------------~~~~~lL~~i~~~LkpgG~l  182 (256)
T d1qzza2         141 FKP-LPV-TADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRL  182 (256)
T ss_dssp             TSC-CSC-CEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             ccc-ccc-cchhhhccccccccCc------------------------------------HHHHHHHHHHHhhcCCccee
Confidence            864 464 5899999999984222                                    13455788888999999999


Q ss_pred             EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119          212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA  288 (360)
Q Consensus       212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~  288 (360)
                      ++.=.-..+...     ....+..+.+ +.-|+.-|             -..+|.+|+++++++.| |++.+.....
T Consensus       183 lI~d~~~~~~~~-----~~~~~~~~~d-~~ml~~~~-------------g~~rt~~e~~~ll~~AG-f~~~~~~~~~  239 (256)
T d1qzza2         183 LVLDRADVEGDG-----ADRFFSTLLD-LRMLTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTSG  239 (256)
T ss_dssp             EEEECCH------------HHHHHHHH-HHHHHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred             EEEEeccCCCCc-----ccHHHHHHHH-HHHHhhCC-------------CccCCHHHHHHHHHHCC-CceeEEEEeC
Confidence            886322111111     0111111111 11122212             12478999999999995 9998887653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.59  E-value=1.2e-07  Score=83.93  Aligned_cols=151  Identities=14%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCC
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPK  138 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~  138 (360)
                      -+|+|+|||+|..+..+.+.            +     ..|+--|+. .+.-...+.-....--|..+   .+.. +.|+
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~------------g-----~~v~giD~s-~~~i~~a~~~~~~~~~~~~~---~~~~-~~~~   79 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEH------------F-----NDITCVEAS-EEAISHAQGRLKDGITYIHS---RFED-AQLP   79 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTT------------C-----SCEEEEESC-HHHHHHHHHHSCSCEEEEES---CGGG-CCCS
T ss_pred             CcEEEEeCCCcHHHHHHHHc------------C-----CeEEEEeCc-HHHhhhhhcccccccccccc---cccc-cccc
Confidence            47999999999998776331            0     123344432 22333333221111122232   2333 3356


Q ss_pred             CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH-HHHhccCCeEEEEecC
Q 018119          139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR-AQELASGGLMALIVPC  217 (360)
Q Consensus       139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R-a~EL~pGG~lvl~~~g  217 (360)
                      +++|+|++..+|||+..                                      -..+|+.- .+=|+|||.+++.++.
T Consensus        80 ~~fD~I~~~~vleh~~d--------------------------------------~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          80 RRYDNIVLTHVLEHIDD--------------------------------------PVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             SCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccccccccceeEecCC--------------------------------------HHHHHHHHHHHhcCCCceEEEEeCC
Confidence            89999999999999654                                      12244333 3569999999999864


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhh----cccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119          218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQV----DSFNLPSYFPTPQELKALLKRNASFSIEKFEPL  287 (360)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~----d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~  287 (360)
                      ...           ++..+ ..     ..|.+.....    +-..--....+.++++..+++.| |+|.+.+.+
T Consensus       122 ~~~-----------~~~~~-~~-----~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G-f~i~~~~~~  177 (225)
T d2p7ia1         122 ANA-----------VSRQI-AV-----KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGI  177 (225)
T ss_dssp             TTC-----------HHHHH-HH-----HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             ccc-----------HHHHH-HH-----HhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC-CEEEEEEEE
Confidence            331           11111 11     1222221110    00111122348999999999995 999888754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.55  E-value=3.4e-07  Score=82.20  Aligned_cols=99  Identities=16%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             ceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           57 KVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      +.-+|+|+|||+|..+..+..             ..|+..++++...+ ..+.+.+..-|..                  
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~------------------   84 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSY------------------   84 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTT------------------
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchh------------------
Confidence            346899999999998777654             23333333333221 1223444444431                  


Q ss_pred             EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ  203 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~  203 (360)
                              -..+.+++++|+|+|..++||+-..                                  .+|+..+|+.-++
T Consensus        85 --------~~~~~~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~i~~  122 (252)
T d1ri5a_          85 --------GRHMDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIAR  122 (252)
T ss_dssp             --------TSCCCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHH
T ss_pred             --------hhcccccccceEEEEcceeeecCCC----------------------------------HHHHHHHHHHHhc
Confidence                    1122356799999999999995431                                  2467889999999


Q ss_pred             HhccCCeEEEEec
Q 018119          204 ELASGGLMALIVP  216 (360)
Q Consensus       204 EL~pGG~lvl~~~  216 (360)
                      -|+|||+|+++++
T Consensus       123 ~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         123 HLRPGGYFIMTVP  135 (252)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             eeCCCCEEEEEec
Confidence            9999999999874

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=2.6e-07  Score=81.99  Aligned_cols=95  Identities=17%  Similarity=0.354  Sum_probs=63.1

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      .+.-+|+|+|||+|..|+.+.+            .+|+..+++....+   +.+.+...|.                   
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~---~~i~~~~~d~-------------------   97 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDV-------------------   97 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCG-------------------
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc---ccchheehhh-------------------
Confidence            3456999999999998887755            34444444333221   1233333332                   


Q ss_pred             EeecCCccccccCCCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                              .+ +-+++++|+|+|. .++||++.                                    .|+..+|+..+
T Consensus        98 --------~~-l~~~~~fD~I~~~~~~~~~~~~------------------------------------~~~~~~L~~~~  132 (251)
T d1wzna1          98 --------LE-IAFKNEFDAVTMFFSTIMYFDE------------------------------------EDLRKLFSKVA  132 (251)
T ss_dssp             --------GG-CCCCSCEEEEEECSSGGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred             --------hh-cccccccchHhhhhhhhhcCCh------------------------------------HHHHHHHHHHH
Confidence                    22 1224689999986 57888632                                    25677999999


Q ss_pred             HHhccCCeEEEEecC
Q 018119          203 QELASGGLMALIVPC  217 (360)
Q Consensus       203 ~EL~pGG~lvl~~~g  217 (360)
                      +-|+|||++++.+..
T Consensus       133 ~~LkpgG~lii~~~~  147 (251)
T d1wzna1         133 EALKPGGVFITDFPC  147 (251)
T ss_dssp             HHEEEEEEEEEEEEC
T ss_pred             HHcCCCcEEEEEecc
Confidence            999999999998754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.50  E-value=2.3e-06  Score=77.13  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=93.9

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ++.-+|+|+|||+|..++.+++        +       .|++++..-|+|.     +...-....+  +..++|+|++. 
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~-----vi~~~~~~~r--i~~~~gd~~~~-  136 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIIS--------K-------YPLIKGINFDLPQ-----VIENAPPLSG--IEHVGGDMFAS-  136 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-----HHTTCCCCTT--EEEEECCTTTC-
T ss_pred             cCCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEecchh-----hhhccCCCCC--eEEecCCcccc-
Confidence            4567899999999987665532        2       3788999999984     2332222222  34567889975 


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      .|.  -|+++.+..||..+.                                    ++-.+.|+.-++-|+|||++++.=
T Consensus       137 ~p~--~D~~~l~~vLh~~~d------------------------------------e~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         137 VPQ--GDAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             CCC--EEEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc--ceEEEEehhhhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            573  499999999996332                                    123457888889999999988874


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          216 PCLPDGISPGECSVLASADLLGDCLMDMAK-MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      .-.++.....  ........+ +. .-|+. .|.              .+|.+|+++++++.| |+..++.
T Consensus       179 ~v~~~~~~~~--~~~~~~~~~-d~-~m~~~~~g~--------------ert~~e~~~ll~~AG-F~~v~v~  230 (244)
T d1fp1d2         179 FILPEEPNTS--EESKLVSTL-DN-LMFITVGGR--------------ERTEKQYEKLSKLSG-FSKFQVA  230 (244)
T ss_dssp             EEECSSCCSS--HHHHHHHHH-HH-HHHHHHSCC--------------CEEHHHHHHHHHHTT-CSEEEEE
T ss_pred             EEecCCCCCc--hHHHHHHHH-HH-HHHhhCCCc--------------CCCHHHHHHHHHHcC-CCceEEE
Confidence            3333221100  000010111 11 11222 232              478999999999996 9876654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.44  E-value=2.3e-07  Score=85.13  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchH---HHHhhCCCCCcceEeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFN---ALYKSLPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn---~lF~~l~~~~~~f~~gvpgSFy  132 (360)
                      .++.+|+|+|||+|..+..+...        +      ++..+|+--|+..+=..   ..++.++. +.-|..+   .+.
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~--------~------~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~---d~~   87 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPL--------L------PEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEG---DAT   87 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTT--------S------CTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEES---CTT
T ss_pred             CCcCEEEEecCcCCHHHHHHHHh--------C------CCCCEEEEEecchhHhhhhhcccccccc-ccccccc---ccc
Confidence            56799999999999887665321        0      11234555555321111   11222221 1123332   344


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      .--+ ++++|+|+|+.++||++.                                      ...+|+.-++-|+|||+++
T Consensus        88 ~~~~-~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~li  128 (281)
T d2gh1a1          88 EIEL-NDKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGKII  128 (281)
T ss_dssp             TCCC-SSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEEEE
T ss_pred             cccc-cCCceEEEEehhhhcCCC--------------------------------------HHHHHHHHHHHcCcCcEEE
Confidence            3333 468999999999999654                                      3346777778999999999


Q ss_pred             EEec
Q 018119          213 LIVP  216 (360)
Q Consensus       213 l~~~  216 (360)
                      +.-+
T Consensus       129 i~~~  132 (281)
T d2gh1a1         129 CFEP  132 (281)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=1.5e-07  Score=82.82  Aligned_cols=100  Identities=14%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      ++..+|+|+|||+|..+..+.+.                 -.+|+-.|+-. +.-...+.-  ....++.   +....--
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~giD~s~-~~l~~a~~~--~~~~~~~---~~~~~l~   97 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER-----------------GFEVVLVDPSK-EMLEVAREK--GVKNVVE---AKAEDLP   97 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-----------------TCEEEEEESCH-HHHHHHHHH--TCSCEEE---CCTTSCC
T ss_pred             CCCCEEEEECCCCchhccccccc-----------------ceEEEEeeccc-ccccccccc--ccccccc---ccccccc
Confidence            34568999999999999876331                 13444445431 111112211  1112322   2345545


Q ss_pred             CCCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      ||++++|+|+|. .++||+..                                      ...+|+.-.+-|+|||.+++.
T Consensus        98 ~~~~~fD~ii~~~~~~~~~~d--------------------------------------~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1          98 FPSGAFEAVLALGDVLSYVEN--------------------------------------KDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             SCTTCEEEEEECSSHHHHCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccceeeecchhhhhhh--------------------------------------HHHHHHHHHhhcCcCcEEEEE
Confidence            889999999986 57899543                                      344677777899999999998


Q ss_pred             ec
Q 018119          215 VP  216 (360)
Q Consensus       215 ~~  216 (360)
                      +.
T Consensus       140 ~~  141 (246)
T d2avna1         140 VD  141 (246)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.29  E-value=5.9e-07  Score=79.94  Aligned_cols=95  Identities=19%  Similarity=0.341  Sum_probs=62.8

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY  123 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f  123 (360)
                      +++-+|+|+|||+|..|+.+..            .+++..+++....+   ..++++..|.                   
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~---~~v~~~~~d~-------------------   93 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG---LKPRLACQDI-------------------   93 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT---CCCEEECCCG-------------------
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC---ccceeeccch-------------------
Confidence            3456899999999999887754            23333333332221   1244444333                   


Q ss_pred             EeecCCccccccCCCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 018119          124 AAGVPGSFHNRLFPKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARA  202 (360)
Q Consensus       124 ~~gvpgSFy~rlfP~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra  202 (360)
                              .. +-+++++|+|+|. .++||+..                                   .+|+.++|+.-+
T Consensus        94 --------~~-~~~~~~fD~i~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~  129 (246)
T d1y8ca_          94 --------SN-LNINRKFDLITCCLDSTNYIID-----------------------------------SDDLKKYFKAVS  129 (246)
T ss_dssp             --------GG-CCCSCCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHH
T ss_pred             --------hh-hcccccccccceeeeeeeccCC-----------------------------------HHHHHHHHHHHH
Confidence                    11 1124689999986 67888554                                   246888999999


Q ss_pred             HHhccCCeEEEEec
Q 018119          203 QELASGGLMALIVP  216 (360)
Q Consensus       203 ~EL~pGG~lvl~~~  216 (360)
                      +-|+|||.|++.+.
T Consensus       130 ~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         130 NHLKEGGVFIFDIN  143 (246)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             HhCCCCeEEEEEeC
Confidence            99999999998764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=2.1e-06  Score=78.03  Aligned_cols=78  Identities=22%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      .+..+|+|+|||+|..+..+.+.               .|+.+++=.|+-..--...-+..+  +--|..   |+...--
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~---------------~~~~~~~giD~s~~~~~~a~~~~~--~~~~~~---~d~~~l~  142 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADA---------------LPEITTFGLDVSKVAIKAAAKRYP--QVTFCV---ASSHRLP  142 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHT---------------CTTSEEEEEESCHHHHHHHHHHCT--TSEEEE---CCTTSCS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH---------------CCCCEEEEecchHhhhhhhhcccc--ccccee---eehhhcc
Confidence            56789999999999998776431               134566655653211111111222  122333   3466677


Q ss_pred             CCCCceeEEEeccccccc
Q 018119          136 FPKASINFFHCSYGLQWL  153 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWL  153 (360)
                      ||++|+|+|++..++||+
T Consensus       143 ~~~~sfD~v~~~~~~~~~  160 (268)
T d1p91a_         143 FSDTSMDAIIRIYAPCKA  160 (268)
T ss_dssp             BCTTCEEEEEEESCCCCH
T ss_pred             CCCCCEEEEeecCCHHHH
Confidence            899999999998887773

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.15  E-value=2e-05  Score=70.70  Aligned_cols=147  Identities=17%  Similarity=0.158  Sum_probs=93.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      .+.-+|+|+|||+|..++.++        ++       .|++++..-|||.     +....+...+  +..++|.|+.. 
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~-----vi~~~~~~~r--v~~~~gD~f~~-  135 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIIC--------ET-------FPKLKCIVFDRPQ-----VVENLSGSNN--LTYVGGDMFTS-  135 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCCBTT--EEEEECCTTTC-
T ss_pred             cCceEEEEecCCccHHHHHHH--------Hh-------CCCCeEEEecCHH-----HHHhCcccCc--eEEEecCcccC-
Confidence            445689999999998766542        22       3779999999983     3444443333  44567889975 


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CeEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG---GLMA  212 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG---G~lv  212 (360)
                      .|  ..|+++....||..+.                                    ++-.++|+.-++.|+||   |+++
T Consensus       136 ~p--~aD~~~l~~vLHdw~d------------------------------------~~~~~iL~~~~~al~pgg~~~~ll  177 (244)
T d1fp2a2         136 IP--NADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGKVT  177 (244)
T ss_dssp             CC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred             CC--CCcEEEEEeecccCCh------------------------------------HHHHHHHHHHHHHcCcccCCcEEE
Confidence            35  5699999999995332                                    23455888889999999   6665


Q ss_pred             EEecCCCCCCCCCCCchhhHHHHHHHHHHHH---HHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          213 LIVPCLPDGISPGECSVLASADLLGDCLMDM---AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~m---v~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      +.=.-.++...   ...   ... ...+.+|   +-.|.              .||.+|+++++++.| |++.++.
T Consensus       178 i~e~~~~~~~~---~~~---~~~-~~~~~dl~m~~~~G~--------------ert~~e~~~ll~~AG-f~~~~i~  231 (244)
T d1fp2a2         178 IIDMVIDKKKD---ENQ---VTQ-IKLLMDVNMACLNGK--------------ERNEEEWKKLFIEAG-FQHYKIS  231 (244)
T ss_dssp             EEECEECTTTS---CHH---HHH-HHHHHHHHGGGGTCC--------------CEEHHHHHHHHHHTT-CCEEEEE
T ss_pred             EEEeecCCCCC---Cch---HHH-HHHHHHHHHHhCCCc--------------CCCHHHHHHHHHHcC-CceEEEE
Confidence            55222222111   000   011 1122222   22232              579999999999996 9887764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=5.4e-06  Score=75.71  Aligned_cols=51  Identities=16%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             cCCCCceeEEEec-ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          135 LFPKASINFFHCS-YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       135 lfP~~S~h~~~Ss-~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      +.+.+++|+|++. .+++++..   ...+                            ..|...+|+.-++-|+|||+|++
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~---~~~~----------------------------~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPD---SKGD----------------------------QSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCC---TTSS----------------------------SHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCC---cccC----------------------------hHHHHHHHHHHHHHcCcCcEEEE
Confidence            4456789998875 58888543   2111                            13677899999999999999999


Q ss_pred             Eec
Q 018119          214 IVP  216 (360)
Q Consensus       214 ~~~  216 (360)
                      .+.
T Consensus       173 ~~~  175 (292)
T d1xvaa_         173 DHR  175 (292)
T ss_dssp             EEE
T ss_pred             eec
Confidence            874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=4.9e-06  Score=73.20  Aligned_cols=79  Identities=11%  Similarity=0.087  Sum_probs=45.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCcc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSF  131 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSF  131 (360)
                      ....+|+|+|||+|..|..+... +             .+.-.|+-.|.-. +.-...+.    ..-.+..+..   |..
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~-~-------------~~~g~V~~id~~~-~~~~~a~~~~~~~~~~n~~~~~---~d~  135 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRV-V-------------GEKGLVVSVEYSR-KICEIAKRNVERLGIENVIFVC---GDG  135 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-H-------------CTTCEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEE---SCG
T ss_pred             cccceEEEecCccchhHHHHHHH-h-------------CCCCcEEEeecch-hhHHHhhhhHhhhccccccccc---Cch
Confidence            34579999999999999866432 2             1223444444321 11111111    1111222333   345


Q ss_pred             ccccCCCCceeEEEecccccc
Q 018119          132 HNRLFPKASINFFHCSYGLQW  152 (360)
Q Consensus       132 y~rlfP~~S~h~~~Ss~alHW  152 (360)
                      ..-+++.+++|.+++.+++++
T Consensus       136 ~~~~~~~~~fD~I~~~~~~~~  156 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVTVGVDE  156 (213)
T ss_dssp             GGCCGGGCCEEEEEECSBBSC
T ss_pred             HHccccccchhhhhhhccHHH
Confidence            555667788999999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.06  E-value=6.4e-05  Score=67.05  Aligned_cols=149  Identities=21%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl  135 (360)
                      .+.-+|+|+|||+|..++.+++        +       .|..++..-|||.-     ........+  +..++|.|+.. 
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v-----i~~~~~~~r--~~~~~~d~~~~-  136 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVS--------K-------YPTIKGINFDLPHV-----IEDAPSYPG--VEHVGGDMFVS-  136 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEEECTTT-----TTTCCCCTT--EEEEECCTTTC-
T ss_pred             cCCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEcccHHh-----hhhcccCCc--eEEeccccccc-
Confidence            3456899999999988776642        2       37789999999962     111111112  44567788875 


Q ss_pred             CCCCceeEEEeccccc-ccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119          136 FPKASINFFHCSYGLQ-WLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI  214 (360)
Q Consensus       136 fP~~S~h~~~Ss~alH-WLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~  214 (360)
                      .|..  |+.+-.+.|| | +                                    .+|...+|+.-++-|+|||++++.
T Consensus       137 ~P~a--d~~~l~~vlh~~-~------------------------------------d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         137 IPKA--DAVFMKWICHDW-S------------------------------------DEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             CCCC--SCEECSSSSTTS-C------------------------------------HHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             CCCc--ceEEEEEEeecC-C------------------------------------HHHHHHHHHHHHHhcCCCceEEEE
Confidence            5754  4444455555 4 1                                    124566888899999999998887


Q ss_pred             ecCCCCCCCCCCCchhhHHHHHHHHHHHHHH--cCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119          215 VPCLPDGISPGECSVLASADLLGDCLMDMAK--MGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE  285 (360)
Q Consensus       215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~--eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e  285 (360)
                      =.-.++....   ......... .-+.-|+.  .|.              .+|.+|+++++++.| |+..++.
T Consensus       178 d~~~~~~~~~---~~~~~~~~~-~d~~ml~~~~~g~--------------ert~~e~~~ll~~AG-f~~vkv~  231 (243)
T d1kyza2         178 ECILPVAPDS---SLATKGVVH-IDVIMLAHNPGGK--------------ERTQKEFEDLAKGAG-FQGFKVH  231 (243)
T ss_dssp             ECEECSSCCC---CHHHHHHHH-HHHHHHHHCSSCC--------------CEEHHHHHHHHHHHC-CSCEEEE
T ss_pred             EEEecCCCCC---chhhHHHHH-HHHHHHhhCCCCC--------------cCCHHHHHHHHHHcC-CCcEEEE
Confidence            3322211110   011111111 11222332  232              578999999999995 9877765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=6e-06  Score=76.98  Aligned_cols=98  Identities=20%  Similarity=0.301  Sum_probs=63.4

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCc-ceEeecCCcccc
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQ-YYAAGVPGSFHN  133 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~-~f~~gvpgSFy~  133 (360)
                      -+|+|+|||+|..|+.+.+.            +    .-+|+-.|..  ..-.+.+..    ..... .++.   |....
T Consensus        40 ~~VLDlGcGtG~ls~~aa~~------------G----a~~V~avd~s--~~~~~a~~~~~~~~~~~~i~~i~---~~~~~   98 (328)
T d1g6q1_          40 KIVLDVGCGTGILSMFAAKH------------G----AKHVIGVDMS--SIIEMAKELVELNGFSDKITLLR---GKLED   98 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHT------------C----CSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEE---SCTTT
T ss_pred             CEEEEeCCCCCHHHHHHHHh------------C----CCEEEEEeCC--HHHHHHHHHHHHhCccccceEEE---eehhh
Confidence            58999999999887766431            1    1256666653  222222221    11111 2333   34556


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      --+|++++|+++|....|.+...                                   .++..++.+|.+-|+|||+|+
T Consensus        99 l~~~~~~~D~i~se~~~~~~~~e-----------------------------------~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          99 VHLPFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCCSSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCcccceeEEEEEecceeeccc-----------------------------------hhHHHHHHHHHhccCCCeEEE
Confidence            66899999999999888875441                                   246778999999999999985

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=6e-06  Score=71.06  Aligned_cols=47  Identities=6%  Similarity=0.013  Sum_probs=33.9

Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      ++. -+|++++|+|+|+..+|+..+                                     .+..+|+.-.+-|+|||+
T Consensus       111 ~~~-~~~~~~fD~Ii~~~p~~~~~~-------------------------------------~~~~~l~~~~~~LkpgG~  152 (194)
T d1dusa_         111 LYE-NVKDRKYNKIITNPPIRAGKE-------------------------------------VLHRIIEEGKELLKDNGE  152 (194)
T ss_dssp             TTT-TCTTSCEEEEEECCCSTTCHH-------------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred             hhh-hhccCCceEEEEcccEEecch-------------------------------------hhhhHHHHHHHhcCcCcE
Confidence            444 457789999999887776211                                     134567777788999999


Q ss_pred             EEEEe
Q 018119          211 MALIV  215 (360)
Q Consensus       211 lvl~~  215 (360)
                      |++..
T Consensus       153 l~i~~  157 (194)
T d1dusa_         153 IWVVI  157 (194)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98865

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=1.8e-05  Score=69.31  Aligned_cols=110  Identities=10%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC---CCCCcceEeecCCccccccC
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL---PSDRQYYAAGVPGSFHNRLF  136 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~rlf  136 (360)
                      .|+|+|||+|.+++.+...               .|+..++-.|+-.+=.....+..   .-.+-.|..|-...+ ...|
T Consensus        32 lvLeIGcG~G~~~~~lA~~---------------~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l-~~~~   95 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMAKQ---------------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF   95 (204)
T ss_dssp             EEEEECCTTSHHHHHHHHH---------------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC
T ss_pred             eEEEEEecCcHHHHHHHHh---------------CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh-hccc
Confidence            5899999999998877431               25566666666433222222211   111222333332222 3568


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |++++|.++..+...|..+.- . .         .++.                   ...||+.-++-|||||.|++..
T Consensus        96 ~~~~~d~v~i~fp~P~~k~~h-~-k---------~Rl~-------------------~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          96 EPGEVKRVYLNFSDPWPKKRH-E-K---------RRLT-------------------YSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CTTSCCEEEEESCCCCCSGGG-G-G---------GSTT-------------------SHHHHHHHHHHHTTSCEEEEEE
T ss_pred             Cchhhhccccccccccchhhh-c-c---------hhhh-------------------HHHHHHHHHHhCCCCcEEEEEE
Confidence            999999999999999955411 0 0         0111                   1357888889999999998864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.80  E-value=3e-05  Score=71.78  Aligned_cols=100  Identities=19%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCcccccc
Q 018119           59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHNRL  135 (360)
Q Consensus        59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~rl  135 (360)
                      -+|+|+|||+|..|+.+.+.            |   + -+|+--|... .....-+...   -...  +.-+-|....--
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~------------G---a-~~V~avd~s~-~~~~a~~~~~~n~~~~~--v~~~~~~~~~~~   95 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKA------------G---A-RKVIGIECSS-ISDYAVKIVKANKLDHV--VTIIKGKVEEVE   95 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHT------------T---C-SEEEEEECST-THHHHHHHHHHTTCTTT--EEEEESCTTTCC
T ss_pred             CEEEEEecCCcHHHHHHHHh------------C---C-CEEEEEcCcH-HHhhhhhHHHHhCCccc--cceEeccHHHcc
Confidence            47999999999877665321            1   1 3567677542 2222111111   1111  222234566677


Q ss_pred             CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                      +|.+++|+++|....|.+-.                                   +.++..+|.+|.+-|+|||+++
T Consensus        96 ~~~~~~D~ivs~~~~~~l~~-----------------------------------e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          96 LPVEKVDIIISEWMGYCLFY-----------------------------------ESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CSSSCEEEEEECCCBBTBTB-----------------------------------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceeEEEeeeeeeeeecc-----------------------------------HHHHHHHHHHHHhcCCCCeEEE
Confidence            89999999999888777443                                   1247779999999999999986

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.75  E-value=3.8e-05  Score=68.32  Aligned_cols=107  Identities=11%  Similarity=0.031  Sum_probs=62.5

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC---CchHHHHhhCCCCCcceEeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS---NDFNALYKSLPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~---NDFn~lF~~l~~~~~~f~~gvpgSFy  132 (360)
                      ....+|+|+|||+|..+..+.+ +.              |.-.|+=-|...   .+...+....  .....+.+......
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~-~~--------------~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVAD-IA--------------DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQ  135 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHH-HT--------------TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGG
T ss_pred             CCCCEEEEeCEEcCHHHHHHHH-hC--------------CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCc
Confidence            4468999999999988877654 22              234555555432   1222221111  12233333322222


Q ss_pred             cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119          133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA  212 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  212 (360)
                        ..++.+.++.+++..+||..+                                      ...+++.-..-|+|||+++
T Consensus       136 --~~~~~~~~v~~i~~~~~~~~~--------------------------------------~~~~l~~~~r~LKpgG~~~  175 (230)
T d1g8sa_         136 --EYANIVEKVDVIYEDVAQPNQ--------------------------------------AEILIKNAKWFLKKGGYGM  175 (230)
T ss_dssp             --GGTTTCCCEEEEEECCCSTTH--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             --ccccccceeEEeeccccchHH--------------------------------------HHHHHHHHHHhcccCceEE
Confidence              234466777777777777322                                      3446777778999999999


Q ss_pred             EEecCCC
Q 018119          213 LIVPCLP  219 (360)
Q Consensus       213 l~~~g~~  219 (360)
                      +..-.+.
T Consensus       176 i~~k~~~  182 (230)
T d1g8sa_         176 IAIKARS  182 (230)
T ss_dssp             EEEEGGG
T ss_pred             EEeeccc
Confidence            9876554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5e-05  Score=70.80  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             eeEEeeecCCCCCccHHHHH--------------HHH-------HHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC
Q 018119           58 VFSIADLGCSVGPNTFNAVQ--------------NII-------DSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL  116 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~--------------~ii-------~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l  116 (360)
                      .-+|+|+|||+|..++.+..              ..+       ...+.+++..+...+.+.+...|.-..+|...+   
T Consensus       152 ~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~---  228 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI---  228 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH---
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc---
Confidence            46899999999999987765              111       112223333333345688888888776665522   


Q ss_pred             CCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHH
Q 018119          117 PSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIES  196 (360)
Q Consensus       117 ~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~  196 (360)
                                            ...|+++++..+||    |                                   |+..
T Consensus       229 ----------------------~~advi~~~~~~f~----~-----------------------------------~~~~  247 (328)
T d1nw3a_         229 ----------------------ANTSVIFVNNFAFG----P-----------------------------------EVDH  247 (328)
T ss_dssp             ----------------------HHCSEEEECCTTTC----H-----------------------------------HHHH
T ss_pred             ----------------------CcceEEEEcceecc----h-----------------------------------HHHH
Confidence                                  14578888776676    1                                   3445


Q ss_pred             HHHHHHHHhccCCeEEEE
Q 018119          197 FLLARAQELASGGLMALI  214 (360)
Q Consensus       197 FL~~Ra~EL~pGG~lvl~  214 (360)
                      .|+...+.|||||++|+.
T Consensus       248 ~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         248 QLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHTTCCTTCEEEES
T ss_pred             HHHHHHHhCCCCcEEEEe
Confidence            677778999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.9e-05  Score=67.84  Aligned_cols=27  Identities=11%  Similarity=0.051  Sum_probs=20.6

Q ss_pred             ccccccCCCCceeEEEecccccccCCCCcc
Q 018119          130 SFHNRLFPKASINFFHCSYGLQWLSSTPKE  159 (360)
Q Consensus       130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~  159 (360)
                      ..+.-.++.+++|.+++..++++   +|..
T Consensus       140 D~~~~~~~~~~fD~I~~~~~~~~---ip~~  166 (224)
T d1i1na_         140 DGRMGYAEEAPYDAIHVGAAAPV---VPQA  166 (224)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSS---CCHH
T ss_pred             ecccccchhhhhhhhhhhcchhh---cCHH
Confidence            34555667789999999999987   6643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00013  Score=67.06  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh
Q 018119           36 AIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS  115 (360)
Q Consensus        36 ~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~  115 (360)
                      ....+||......       -+.-+|+|+|||+|..++.+.+.            |   + -+|+-.|...  --...+.
T Consensus        21 ~~y~~ai~~~~~~-------~~~~~VLDiGcG~G~lsl~aa~~------------G---a-~~V~aid~s~--~~~~a~~   75 (311)
T d2fyta1          21 ESYRDFIYQNPHI-------FKDKVVLDVGCGTGILSMFAAKA------------G---A-KKVLGVDQSE--ILYQAMD   75 (311)
T ss_dssp             HHHHHHHHHCGGG-------TTTCEEEEETCTTSHHHHHHHHT------------T---C-SEEEEEESST--HHHHHHH
T ss_pred             HHHHHHHHhcccc-------CCcCEEEEECCCCCHHHHHHHHc------------C---C-CEEEEEeCHH--HHHHHHH
Confidence            3445667653321       23458999999999877765431            1   1 3566666532  2211111


Q ss_pred             C----CCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHH
Q 018119          116 L----PSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESA  191 (360)
Q Consensus       116 l----~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~  191 (360)
                      .    .....+.  -+.|...+--+|..++|+++|....|-+..              .                     
T Consensus        76 ~~~~~~~~~~i~--~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~--------------e---------------------  118 (311)
T d2fyta1          76 IIRLNKLEDTIT--LIKGKIEEVHLPVEKVDVIISEWMGYFLLF--------------E---------------------  118 (311)
T ss_dssp             HHHHTTCTTTEE--EEESCTTTSCCSCSCEEEEEECCCBTTBTT--------------T---------------------
T ss_pred             HHHHhCCCccce--EEEeeHHHhcCccccceEEEEeeeeeeccc--------------c---------------------
Confidence            1    1111111  122345555578899999999776665332              1                     


Q ss_pred             hhHHHHHHHHHHHhccCCeEEE
Q 018119          192 KGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       192 ~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      ..+..++.+|.+-|+|||+++.
T Consensus       119 ~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         119 SMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccHHHHHHHHhcCCCCcEEec
Confidence            1256688899999999999973

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.68  E-value=7.4e-05  Score=65.16  Aligned_cols=110  Identities=10%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCc-ceEeecCCccccccC
Q 018119           60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQ-YYAAGVPGSFHNRLF  136 (360)
Q Consensus        60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~-~f~~gvpgSFy~rlf  136 (360)
                      .|+|+|||+|.+++.+...               .|+..++=.|+-.+=.....+...  .-.+ .|..+..--+ .+.|
T Consensus        34 lvLdIGcG~G~~~~~lA~~---------------~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l-~~~~   97 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAKQ---------------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF   97 (204)
T ss_dssp             EEEEESCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS
T ss_pred             eEEEEeccCCHHHHHHHHH---------------CCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH-hhhc
Confidence            5899999999998887441               244555555543222222211111  0112 2333332223 3578


Q ss_pred             CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119          137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      |+.|+|.++.++.-.|-.+.-...           |+.                   -..||+.-++-|+|||.+.+..
T Consensus        98 ~~~~~~~i~i~fPdPw~K~~h~kr-----------Rl~-------------------~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          98 EDGEIDRLYLNFSDPWPKKRHEKR-----------RLT-------------------YKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGG-----------STT-------------------SHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cCCceehhcccccccccchhhhhh-----------hhh-------------------HHHHHHHHHHhCCCCcEEEEEE
Confidence            999999999999999955421100           110                   1458888889999999998864

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.62  E-value=6.4e-05  Score=66.62  Aligned_cols=20  Identities=20%  Similarity=0.219  Sum_probs=16.6

Q ss_pred             ceeEEeeecCCCCCccHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ...+|+|+|||+|..|..+.
T Consensus        70 ~g~~VLdIG~GsGy~ta~La   89 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIA   89 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHH
T ss_pred             ccceEEEecCCCCHHHHHHH
Confidence            35699999999999997654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.62  E-value=7.4e-05  Score=63.58  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=17.9

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ...-+|+|+|||+|..|+.+..
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~   53 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAG   53 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHT
T ss_pred             CCCCEEEEEECCeEcccccccc
Confidence            3456899999999999987654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=5.8e-05  Score=68.10  Aligned_cols=19  Identities=26%  Similarity=0.212  Sum_probs=15.7

Q ss_pred             eeEEeeecCCCCCccHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~   76 (360)
                      .-+|+|+|||+|..++.+.
T Consensus       121 g~~VLDiGcGsG~l~i~aa  139 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAE  139 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHH
T ss_pred             cCEEEEcccchhHHHHHHH
Confidence            3699999999999887653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.44  E-value=0.00013  Score=65.65  Aligned_cols=22  Identities=14%  Similarity=0.225  Sum_probs=18.5

Q ss_pred             eeEEeeecCCCCCccHHHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQNI   79 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~i   79 (360)
                      -.+|+|+|||+|..|+.+...+
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v  107 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYAL  107 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH
T ss_pred             cCEEEEeeeeCcHHHHHHHHHh
Confidence            4799999999999998876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00016  Score=63.41  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHHhccCCeEEE
Q 018119          193 GIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       193 D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      |...||+.-.+-|+|||+|++
T Consensus       141 ~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         141 QFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             HHHHHHHTHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEEE
Confidence            566688888899999999876

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.22  E-value=0.00048  Score=60.37  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=16.8

Q ss_pred             ceeEEeeecCCCCCccHHHH
Q 018119           57 KVFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~   76 (360)
                      ..-+|+|+|||+|..|..+.
T Consensus        78 ~g~~VLeIGsGsGY~taila   97 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALIS   97 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHH
T ss_pred             ccceEEEecCCCChhHHHHH
Confidence            35799999999999998654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.21  E-value=0.00018  Score=62.69  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhccCCeEEEEecCC
Q 018119          194 IESFLLARAQELASGGLMALIVPCL  218 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~~g~  218 (360)
                      ...||+.-.+-|+|||++++..-.+
T Consensus       139 ~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         139 IEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHHHHHHHHhccCCeEEEEEEcc
Confidence            3457777788999999999987544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.18  E-value=0.0009  Score=59.00  Aligned_cols=107  Identities=11%  Similarity=0.048  Sum_probs=59.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC---CchHHHHhhCCCCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS---NDFNALYKSLPSDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~---NDFn~lF~~l~~~~~~f~~gvpgSFy~  133 (360)
                      .-.+|+|+|||+|..|..+.+ ++             -|.=.||=-|.-.   .|.....+..  .....+.+.-+.-..
T Consensus        73 pG~~VLDlGaGsG~~t~~la~-~V-------------G~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSD-IV-------------GWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE  136 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHH-HH-------------CTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG
T ss_pred             CCCEEEEeccCCCHHHHHHHH-Hh-------------CCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCccc
Confidence            358999999999999988755 33             0223444444432   1111111111  111233333333332


Q ss_pred             ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                      -.++..++|++++..+.++                                        +-..+++.-.+-|+|||++++
T Consensus       137 ~~~~~~~vD~i~~d~~~~~----------------------------------------~~~~~l~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         137 YRALVPKVDVIFEDVAQPT----------------------------------------QAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             GTTTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccceEEEEEEccccc----------------------------------------hHHHHHHHHHHhcccCCeEEE
Confidence            2334468998886532211                                        123467777789999999999


Q ss_pred             EecCCC
Q 018119          214 IVPCLP  219 (360)
Q Consensus       214 ~~~g~~  219 (360)
                      ..-++.
T Consensus       177 ~~ka~~  182 (227)
T d1g8aa_         177 AVKSRS  182 (227)
T ss_dssp             EEEGGG
T ss_pred             EEECCc
Confidence            876554

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00045  Score=66.22  Aligned_cols=20  Identities=30%  Similarity=0.315  Sum_probs=17.3

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|..++.+..
T Consensus       217 gd~fLDLGCG~G~~vl~aA~  236 (406)
T d1u2za_         217 GDTFMDLGSGVGNCVVQAAL  236 (406)
T ss_dssp             TCEEEEESCTTSHHHHHHHH
T ss_pred             CCEEEeCCCCCcHHHHHHHH
Confidence            46899999999999988765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.0019  Score=58.15  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=59.0

Q ss_pred             eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C------CCCCcceEeecCCc
Q 018119           58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L------PSDRQYYAAGVPGS  130 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l------~~~~~~f~~gvpgS  130 (360)
                      -.+|+|.|||+|..|+.+...+=              |+-+|+=-|.- -|+-...+. +      ...+--|..   +.
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vg--------------p~G~V~~~d~~-~~~~~~Ar~n~~~~~~~~~~nv~~~~---~d  158 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVG--------------PAGQVISYEQR-ADHAEHARRNVSGCYGQPPDNWRLVV---SD  158 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHC--------------TTSEEEEECSC-HHHHHHHHHHHHHHHTSCCTTEEEEC---SC
T ss_pred             CCEEEecCcCCcHHHHHHHHhhC--------------CCcEEEEecCC-HHHHHHHHHhhhhhccCCCceEEEEe---cc
Confidence            57999999999999998866441              33444444443 233333221 0      001112333   33


Q ss_pred             cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                      +.+.-+|++++|.||..        +|..-.                                   +|..-++-|||||+
T Consensus       159 ~~~~~~~~~~fDaV~ld--------lp~P~~-----------------------------------~l~~~~~~LkpGG~  195 (264)
T d1i9ga_         159 LADSELPDGSVDRAVLD--------MLAPWE-----------------------------------VLDAVSRLLVAGGV  195 (264)
T ss_dssp             GGGCCCCTTCEEEEEEE--------SSCGGG-----------------------------------GHHHHHHHEEEEEE
T ss_pred             cccccccCCCcceEEEe--------cCCHHH-----------------------------------HHHHHHhccCCCCE
Confidence            55667899999999852        343211                                   35555689999999


Q ss_pred             EEEEe
Q 018119          211 MALIV  215 (360)
Q Consensus       211 lvl~~  215 (360)
                      +++..
T Consensus       196 lv~~~  200 (264)
T d1i9ga_         196 LMVYV  200 (264)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0015  Score=59.29  Aligned_cols=74  Identities=8%  Similarity=0.168  Sum_probs=41.8

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCcccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~  133 (360)
                      .+..+|+|+|||+|.-++.+...               .|..+|+..|.-..=.+.-=++..  .-.++  .-+-|+++.
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~---------------~p~~~v~avDis~~Al~~A~~Na~~~~~~~v--~~~~~d~~~  169 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASE---------------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNI--HILQSDWFS  169 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHH---------------CTTSEEEEECSSHHHHHHHHHHHHHHTCCSE--EEECCSTTG
T ss_pred             ccccceeeeehhhhHHHHHHHhh---------------CCcceeeeccchhHHHhHHHHHHHHhCcccc--eeeeccccc
Confidence            45688999999999988877541               245677777764211111111110  00121  122234554


Q ss_pred             ccCCCCceeEEEec
Q 018119          134 RLFPKASINFFHCS  147 (360)
Q Consensus       134 rlfP~~S~h~~~Ss  147 (360)
                      . +|.+.+|+++|+
T Consensus       170 ~-~~~~~fDlIvsN  182 (274)
T d2b3ta1         170 A-LAGQQFAMIVSN  182 (274)
T ss_dssp             G-GTTCCEEEEEEC
T ss_pred             c-cCCCceeEEEec
Confidence            3 456799999997

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.0039  Score=56.04  Aligned_cols=22  Identities=18%  Similarity=0.093  Sum_probs=18.4

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      ..-.+|+|+|||+|..|+.+..
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~  123 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLAR  123 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHH
Confidence            3458999999999999987754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.40  E-value=0.0041  Score=52.93  Aligned_cols=112  Identities=16%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh------------CCCC--Cc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS------------LPSD--RQ  121 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~------------l~~~--~~  121 (360)
                      .+++||.+.|||+|-=...+.-.+-++    ...   ....++++-.|.-.   ..|-+.            +++.  ..
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~----~~~---~~~~~~I~atDi~~---~~l~~A~~g~y~~~~~~~~~~~~~~~   92 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADA----LGM---APGRWKVFASDIDT---EVLEKARSGIYRLSELKTLSPQQLQR   92 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHH----HCS---CTTSEEEEEEESCH---HHHHHHHHTEEEGGGGTTSCHHHHHH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHh----hhh---cCCceEEEeecCCh---HHhhHhhcCcccHHHHhhhhHHHHhh
Confidence            568999999999997655554333332    111   12458888888732   333221            1110  13


Q ss_pred             ceEeecCCc---------------------cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCH
Q 018119          122 YYAAGVPGS---------------------FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPN  180 (360)
Q Consensus       122 ~f~~gvpgS---------------------Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~  180 (360)
                      ||.-...+.                     ......|.+.+|+|+|-+.|+.++..                        
T Consensus        93 yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~------------------------  148 (193)
T d1af7a2          93 YFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT------------------------  148 (193)
T ss_dssp             HEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH------------------------
T ss_pred             ceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH------------------------
Confidence            443332211                     11122345789999999999986641                        


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119          181 EVVEAYSAESAKGIESFLLARAQELASGGLMAL  213 (360)
Q Consensus       181 ~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl  213 (360)
                                  ...+.|+.=++-|+|||.|++
T Consensus       149 ------------~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         149 ------------TQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             ------------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             ------------HHHHHHHHHHHHhCCCcEEEE
Confidence                        123456677789999998764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.011  Score=54.54  Aligned_cols=22  Identities=9%  Similarity=0.131  Sum_probs=18.9

Q ss_pred             eeEEeeecCCCCCccHHHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQNI   79 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~~i   79 (360)
                      ..+|+|+|||+|..|+.+...+
T Consensus        99 G~rVLE~GtGsG~lt~~LAr~v  120 (324)
T d2b25a1          99 GDTVLEAGSGSGGMSLFLSKAV  120 (324)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEecccccHHHHHHHHHh
Confidence            4799999999999999887643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.0024  Score=55.97  Aligned_cols=19  Identities=26%  Similarity=0.100  Sum_probs=16.9

Q ss_pred             ceeEEeeecCCCCCccHHH
Q 018119           57 KVFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~   75 (360)
                      +.-+|+|+|||+|..|..+
T Consensus        80 ~g~~VLeIGtGsGY~ta~l   98 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACF   98 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHH
Confidence            4589999999999999877

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.87  E-value=0.083  Score=48.08  Aligned_cols=28  Identities=11%  Similarity=0.125  Sum_probs=22.1

Q ss_pred             HHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119          190 SAKGIESFLLARAQELASGGLMALIVPC  217 (360)
Q Consensus       190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  217 (360)
                      ..+|...++..-.+=|+|||+|++....
T Consensus       238 ~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         238 GLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            4456677888888889999999998643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.14  Score=46.51  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=22.3

Q ss_pred             HHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          189 ESAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ...+|+..++..-.+-|+|||.|++...
T Consensus       235 ~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         235 RAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3455677788888999999999988754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.058  Score=47.45  Aligned_cols=22  Identities=14%  Similarity=-0.139  Sum_probs=19.3

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+..+|+|+|||+|.-++.+..
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~   81 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGA   81 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHH
T ss_pred             cccceEEEeCCCchHHHHHHHH
Confidence            4578999999999999998866

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.53  E-value=0.047  Score=49.37  Aligned_cols=125  Identities=14%  Similarity=0.079  Sum_probs=65.3

Q ss_pred             CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh---CCCCCcceEeecCCccc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS---LPSDRQYYAAGVPGSFH  132 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~---l~~~~~~f~~gvpgSFy  132 (360)
                      .+..+|+|.|||+|...+.++..+-    ++      ..++.+++-.|.-..=. .+.+.   +......+..+   .+.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~----~~------~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~~~~~~~---d~~  181 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLE----LK------GDVDVHASGVDVDDLLI-SLALVGADLQRQKMTLLHQ---DGL  181 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHH----TT------SSCEEEEEEEESCHHHH-HHHHHHHHHHTCCCEEEES---CTT
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHH----hc------cCccceEEEecccHHHH-HHHHHHHHHhhhhhhhhcc---ccc
Confidence            4578999999999977666655442    11      23457777777632111 11111   11111112211   122


Q ss_pred             cccCCCCceeEEEec--ccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119          133 NRLFPKASINFFHCS--YGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL  210 (360)
Q Consensus       133 ~rlfP~~S~h~~~Ss--~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~  210 (360)
                       ...|...+|+|+++  |..+|....    ..+.......|..                  .-...|+..-.+-|+|||+
T Consensus       182 -~~~~~~~fD~vi~NPPy~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~Fi~~~~~~Lk~~G~  238 (328)
T d2f8la1         182 -ANLLVDPVDVVISDLPVGYYPDDEN----AKTFELCREEGHS------------------FAHFLFIEQGMRYTKPGGY  238 (328)
T ss_dssp             -SCCCCCCEEEEEEECCCSEESCHHH----HTTSTTCCSSSCE------------------EHHHHHHHHHHHTEEEEEE
T ss_pred             -cccccccccccccCCCCCCCccchh----hhhcchhcccCcc------------------hHHHHHHHHHHHhcCCCCc
Confidence             34567789999998  333332110    0000000011110                  0123488888899999999


Q ss_pred             EEEEecC
Q 018119          211 MALIVPC  217 (360)
Q Consensus       211 lvl~~~g  217 (360)
                      +++.++.
T Consensus       239 ~~~I~p~  245 (328)
T d2f8la1         239 LFFLVPD  245 (328)
T ss_dssp             EEEEEEG
T ss_pred             eEEEecC
Confidence            9999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.95  E-value=0.034  Score=47.19  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhccCCeEEEEe
Q 018119          194 IESFLLARAQELASGGLMALIV  215 (360)
Q Consensus       194 ~~~FL~~Ra~EL~pGG~lvl~~  215 (360)
                      ...+|..+..-|+|||+|++..
T Consensus       120 ~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2         120 LKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCeeeeec
Confidence            5677999999999999998875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.44  E-value=0.41  Score=39.60  Aligned_cols=22  Identities=32%  Similarity=0.671  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhccCCeEEEEec
Q 018119          195 ESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       195 ~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ..|+..-.+-|++||++++.++
T Consensus       124 ~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1         124 GAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCCceEEEEe
Confidence            4577777888999999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.77  E-value=0.32  Score=42.71  Aligned_cols=20  Identities=10%  Similarity=0.061  Sum_probs=17.2

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .-+|+|+|||+|+.|+.+.+
T Consensus       108 g~~VlD~~aG~G~~~l~~a~  127 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAV  127 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHH
T ss_pred             ccEEEECcceEcHHHHHHHH
Confidence            47899999999999988743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.67  E-value=1  Score=40.42  Aligned_cols=22  Identities=14%  Similarity=0.163  Sum_probs=18.7

Q ss_pred             CceeEEeeecCCCCCccHHHHH
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      .+..+|+|++|++|..|+.+..
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~  152 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAA  152 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHH
T ss_pred             cCCCeEEEecCCCcHHHHHHHh
Confidence            3457999999999999998866

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=89.52  E-value=0.76  Score=41.36  Aligned_cols=27  Identities=15%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             HHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119          190 SAKGIESFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      ..+|+...++.-.+=|+|||.|+++..
T Consensus       238 ~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         238 VSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            345666678877788999999998764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=88.36  E-value=1.1  Score=39.34  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=38.0

Q ss_pred             ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCcccc
Q 018119           57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHN  133 (360)
Q Consensus        57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~  133 (360)
                      +..+|+|+|||+|.-++.+..                .|..+|+..|.-..=...-=++..   -...+++  .-++++.
T Consensus       110 ~~~~vld~g~GsG~i~~~la~----------------~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i--~~~~~~~  171 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAK----------------FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFV--RKGEFLE  171 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHH----------------HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE--EESSTTG
T ss_pred             cccEEEEeeeeeehhhhhhhh----------------cccceeeechhhhhHHHHHHHHHHHcCCCceeEE--eeccccc
Confidence            356899999999986655421                034677777764322222111111   1112222  1234444


Q ss_pred             ccCC-CCceeEEEec
Q 018119          134 RLFP-KASINFFHCS  147 (360)
Q Consensus       134 rlfP-~~S~h~~~Ss  147 (360)
                      -+-. .+.+|+++|+
T Consensus       172 ~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         172 PFKEKFASIEMILSN  186 (271)
T ss_dssp             GGGGGTTTCCEEEEC
T ss_pred             ccccccCcccEEEEc
Confidence            3221 2589999997

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.50  E-value=0.31  Score=38.91  Aligned_cols=20  Identities=25%  Similarity=0.120  Sum_probs=17.1

Q ss_pred             eeEEeeecCCCCCccHHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAVQ   77 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~~   77 (360)
                      --+|+|+|||+|..++.+++
T Consensus        15 g~~vlDl~~GtG~~~iea~~   34 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVS   34 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHHH
Confidence            46899999999998887765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.44  E-value=0.4  Score=40.21  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=15.6

Q ss_pred             eeEEeeecCCCCCccHHHH
Q 018119           58 VFSIADLGCSVGPNTFNAV   76 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~~   76 (360)
                      .-+|+|+|||+|..++.++
T Consensus        47 g~~vLDlg~GtG~l~i~a~   65 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGAL   65 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHH
T ss_pred             CCEEEECcCcchHHHHHHH
Confidence            3589999999998877654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=82.72  E-value=0.77  Score=39.51  Aligned_cols=49  Identities=22%  Similarity=0.290  Sum_probs=36.5

Q ss_pred             CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCc
Q 018119           56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSND  108 (360)
Q Consensus        56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ND  108 (360)
                      .+.-+|+++|||.|..|..+++            .+++.+++++..    .+.++++..|.=.-|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~----~~n~~i~~~D~l~~~   80 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD----HDNFQVLNKDILQFK   80 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT----CCSEEEECCCGGGCC
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc----ccchhhhhhhhhhcc
Confidence            3467899999999999999987            566666666542    356888888875443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=82.49  E-value=0.21  Score=42.21  Aligned_cols=18  Identities=22%  Similarity=0.152  Sum_probs=14.6

Q ss_pred             eeEEeeecCCCCCccHHH
Q 018119           58 VFSIADLGCSVGPNTFNA   75 (360)
Q Consensus        58 ~~~IaDlGCs~G~Nt~~~   75 (360)
                      --+|+|+|||+|..++.+
T Consensus        49 Gk~VLDlGcGtG~l~i~a   66 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGS   66 (197)
T ss_dssp             TSEEEEETCTTCHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHH
Confidence            368999999999777654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=81.39  E-value=5.4  Score=36.56  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             HHHHHHHHHhccCCeEEEEec
Q 018119          196 SFLLARAQELASGGLMALIVP  216 (360)
Q Consensus       196 ~FL~~Ra~EL~pGG~lvl~~~  216 (360)
                      .||.+-.+-|++||++++.++
T Consensus       279 ~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         279 NFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEEEec
Confidence            489999999999999999986