Citrus Sinensis ID: 018144
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TP48 | 376 | Adipocyte plasma membrane | yes | no | 0.911 | 0.872 | 0.295 | 4e-33 | |
| Q3T0E5 | 412 | Adipocyte plasma membrane | yes | no | 0.9 | 0.786 | 0.284 | 2e-32 | |
| Q9D7N9 | 415 | Adipocyte plasma membrane | yes | no | 0.955 | 0.828 | 0.283 | 4e-32 | |
| Q5ZIF1 | 415 | Adipocyte plasma membrane | yes | no | 0.972 | 0.843 | 0.281 | 4e-31 | |
| B5X3B2 | 416 | Adipocyte plasma membrane | N/A | no | 0.861 | 0.745 | 0.291 | 7e-30 | |
| Q9HDC9 | 416 | Adipocyte plasma membrane | yes | no | 0.955 | 0.826 | 0.275 | 1e-28 | |
| Q803F5 | 415 | Adipocyte plasma membrane | no | no | 0.597 | 0.518 | 0.305 | 3e-24 | |
| P94111 | 335 | Strictosidine synthase 1 | no | no | 0.475 | 0.510 | 0.280 | 2e-15 | |
| P92976 | 329 | Strictosidine synthase 3 | no | no | 0.422 | 0.462 | 0.305 | 9e-15 | |
| P18417 | 352 | Strictosidine synthase OS | N/A | no | 0.438 | 0.448 | 0.327 | 8e-11 |
| >sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 181/376 (48%), Gaps = 48/376 (12%)
Query: 28 SFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVLSA-----TQLQDFIKVGEGSVNH 80
+F L V L LL ++ SPI P +P + T+L+ ++ E +N
Sbjct: 2 TFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNG 61
Query: 81 PEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDS----------------------- 117
PE + ++ V++T T DG + +L++G S
Sbjct: 62 PE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPN 120
Query: 118 -HLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSK 170
L + D GL +V+ + V+ LS + G K+ F ND+ DG +YFT SSSK
Sbjct: 121 GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSK 180
Query: 171 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230
+ +Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+V E+ R
Sbjct: 181 WQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMAR 240
Query: 231 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKL 286
R+ ++ G KG + F EN+PG PDNI + G +W+A + A + L+
Sbjct: 241 IRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPF 300
Query: 287 IKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNH 343
IK ++ KLFSQ + ++ V++ G R+L DP GQ++++V+ + D +
Sbjct: 301 IKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGY 357
Query: 344 LYVISLTSNFIGKVQL 359
LY+ S S FI ++ L
Sbjct: 358 LYLGSFRSPFICRLSL 373
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Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Rattus norvegicus (taxid: 10116) |
| >sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 48/372 (12%)
Query: 30 GFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA-----TQLQDFIKVGEGSVNHPEDA 84
FL + L+ L ++ SPI P +P + T+LQ ++ E + PE
Sbjct: 47 AFLTIPLLGAL--VLLDSPIDPEPLSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESI 104
Query: 85 SMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDS------------------------HLI 120
+ + V++T T DG + +L++G S L
Sbjct: 105 A-NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLF 163
Query: 121 ICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPH 174
+ D GL +V+ + V+ LS + G K+ F ND+ DG +YFT SSSK+
Sbjct: 164 VVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRR 223
Query: 175 EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 234
+Y L ++EG G+LL+YD + ++ D F NGV LS ED+V+V E R R++
Sbjct: 224 DYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRF 283
Query: 235 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHV 290
++ G KG + F ENLPG PDNI + G +W+++ + A + L+ +K V
Sbjct: 284 YVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKV 343
Query: 291 LAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347
+ KLFSQ + ++ +++ GT +R+L DP GQ++++V+ + HLY+
Sbjct: 344 IF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLG 400
Query: 348 SLTSNFIGKVQL 359
S + ++ +++L
Sbjct: 401 SFRAPYLCRLRL 412
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Bos taurus (taxid: 9913) |
| >sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 51/395 (12%)
Query: 9 PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVL---- 62
PE + S ++F +F L V L LL ++ SPI P +P +
Sbjct: 25 PEVKEGSSFSGRVF---RMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVL 81
Query: 63 -SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDS---- 117
T+L+ ++ E ++ PE + ++ V++T T DG + +L++G S
Sbjct: 82 HPNTKLRQAERLFENQLSGPE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCK 140
Query: 118 --------------------HLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 152
L + D GL +V+ + V+ LS + G K+ F N
Sbjct: 141 TRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 200
Query: 153 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211
D+ DG +YFT SSSK+ +Y L ++E G+LL+YD + ++ D F NG
Sbjct: 201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNG 260
Query: 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271
V LS +ED+V+V E+ R R+ ++ G KG + F EN+PG PDNI + G +W+A
Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAA 320
Query: 272 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 324
+ A + L+ IK ++ K+FSQ + ++ V++ G R+L
Sbjct: 321 TIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 377
Query: 325 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
DP GQ++++V+ + D +LY+ S S FI ++ L
Sbjct: 378 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412
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Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation. Mus musculus (taxid: 10090) |
| >sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 191/402 (47%), Gaps = 52/402 (12%)
Query: 4 TRKTEPETSKKGRT-SSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPA 60
T + + +K+G SSK+F +F L L LL ++ PI P + +P
Sbjct: 19 TEDSPAQEAKEGSAYSSKVF---RVTFLTLAASLAVPLLGATVLLDCPIDPQPISLKEPP 75
Query: 61 VLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFI 115
+L+ +LQ ++ E + PE + ++ V++T T DG I +++DG I
Sbjct: 76 LLTGVLEPNNKLQKAERLWENQLVGPE-SIVNIGDVLFTGTADGKILKIEDGEVQTVARI 134
Query: 116 ------------------------DSHLIICDNANGLHKVSEDGVENFL-----SYVNGS 146
++ L + D GL++V+ E + + + G
Sbjct: 135 GHGPCGTPEDEPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQ 194
Query: 147 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 205
KL F ND+ DG +YFT SSSK+ ++ ++EG G+LL+YD + ++ G
Sbjct: 195 KLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVG 254
Query: 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265
F NGV LS ED+V+V E+ R R+Y++ G KG + F EN+PG PDNI L+ G
Sbjct: 255 LRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGG 314
Query: 266 FWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFIT---LGGGAHLIHVAEDGT 318
+W+A+ + + L+ IK ++ KL SQ L + ++ ++E G+
Sbjct: 315 YWVAMPVVRPNPGFSMLDFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGS 371
Query: 319 IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360
R+ DPTG + +V+ + + +LY+ S S FI ++ L
Sbjct: 372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413
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Gallus gallus (taxid: 9031) |
| >sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 172/357 (48%), Gaps = 47/357 (13%)
Query: 47 SPISPVLDEVPQPAVLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWI 101
SPI P L + +P ++S +L++ ++ E + PE + + +IYT T DG I
Sbjct: 62 SPIHPELLSLSEPPLMSGCYEPNFKLREAQRLFEDQLVGPESIA-NFGDLIYTGTADGKI 120
Query: 102 KRLQ---------------DGTWVNWKFI----------DSHLIICDNANGLHKVSE--D 134
+++ DG+ + L + D GL KV+
Sbjct: 121 VKIEGKSITVIARLGKPPCDGSREQEPSCGRPLGIRVGPNGTLFVADAYLGLFKVNPVTG 180
Query: 135 GVENFLS---YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLL 190
V N +S V G +L F ND+ DG +YFT SSS++ +Y I+E G++L
Sbjct: 181 EVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVL 240
Query: 191 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN 250
+YD + T++ + FANG+ L DE+ V+V E+ R R+ + G KG ++TF +N
Sbjct: 241 EYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDN 300
Query: 251 LPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGG 306
LPG PDNI + G +W+A+ + + L+ IK ++ KLFSQ + +
Sbjct: 301 LPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLMKF 357
Query: 307 GAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360
+I + E G +R+ DP G + ++V+ + D HLY+ S S ++ K+ LS
Sbjct: 358 VPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414
|
Salmo salar (taxid: 8030) |
| >sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 51/395 (12%)
Query: 9 PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVLSA-- 64
PE S ++F +F L V L LL ++ SPI P +P +L
Sbjct: 26 PEAKDGSSFSGRVF---RVTFLMLAVSLTVPLLGAMMLLESPIDPQPLSFKEPPLLLGVL 82
Query: 65 ---TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDS---- 117
T+L+ ++ E + PE + + V++T T DG + +L++G S
Sbjct: 83 HPNTKLRQAERLFENQLVGPESIAHIGD-VMFTGTADGRVVKLENGEIETIARFGSGPCK 141
Query: 118 --------------------HLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 152
L + D GL +V+ + V+ LS + G + F N
Sbjct: 142 TRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVN 201
Query: 153 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211
D+ DG +YFT SSSK+ +Y L ++EG G+LL+YD + ++ D F NG
Sbjct: 202 DLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNG 261
Query: 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271
V LS ED+V+V E+ R R+ ++ G KG + F EN+PG PDNI + G +W+ +
Sbjct: 262 VQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMS 321
Query: 272 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 324
+ + L+ IK ++ KLFSQ + ++ +++ G R+L
Sbjct: 322 TIRPNPGFSMLDFLSERPWIKRMIF---KLFSQETVMKFVPRYSLVLELSDSGAFRRSLH 378
Query: 325 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
DP G + ++++ + D HLY+ S S F+ ++ L
Sbjct: 379 DPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 11/226 (4%)
Query: 143 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201
+ G +L F ND+ DG +YFT SSS++ ++ I+E G++L+YD + +
Sbjct: 191 IAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNV 250
Query: 202 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261
+ + F NG+ L DE+ V+V E+ R ++ + G KG ++TF ENLPG PDNI +
Sbjct: 251 MMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRS 310
Query: 262 PDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLG---GGAHLIHVA 314
G +W+A+ + + L+ +K ++ KLFSQ L + ++ +
Sbjct: 311 SSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIF---KLFSQDTLLKFVPRYSLVVELQ 367
Query: 315 EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360
DGT +R+ DP G + ++ + + HLY+ S S ++ K+ LS
Sbjct: 368 SDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413
|
Danio rerio (taxid: 7955) |
| >sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 11/182 (6%)
Query: 119 LIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSKYLPHE 175
L + D GLH +S G V+G +F + + V+ + G +YFT SS++ P +
Sbjct: 111 LYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQ 170
Query: 176 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 235
+ + G+L KYDPS+ + T++ +G + G A+S D +V+V + K ++YW
Sbjct: 171 VLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYW 230
Query: 236 LKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIA------IIKLDARRMKILNSSKLIK 288
+KG + G E F ++ PDNI + G FW+A I+ + +K+ ++ ++++
Sbjct: 231 IKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSNGEVLQ 289
Query: 289 HV 290
+
Sbjct: 290 TI 291
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 119 LIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSKYLPHE 175
L + D A GLH + G + V G F + + V+ + G +YFT SS + P +
Sbjct: 113 LYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRD 172
Query: 176 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 235
+ G+ KYDPS + T++ +G + G A+S D +V+V + K ++YW
Sbjct: 173 VLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYW 232
Query: 236 LKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIAII 271
+KG + G E F ++ PDNI + G FW+A +
Sbjct: 233 IKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 110 VNWKFIDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFT- 165
+++ + +S + I D L V ++G + V G ++ V V+ G +YFT
Sbjct: 111 ISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTD 170
Query: 166 VSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 224
VSS E +I+ G+L+KYDPS+ TTL+ + G +S D +VVV
Sbjct: 171 VSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVA 230
Query: 225 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269
E R KYWL+G +KG E F +P P NI DG FW++
Sbjct: 231 EFLSNRIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVS 273
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Catharanthus roseus (taxid: 4058) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 255550417 | 356 | Adipocyte plasma membrane-associated pro | 0.911 | 0.921 | 0.538 | 1e-102 | |
| 225444700 | 368 | PREDICTED: adipocyte plasma membrane-ass | 0.947 | 0.926 | 0.524 | 1e-101 | |
| 297738547 | 461 | unnamed protein product [Vitis vinifera] | 0.966 | 0.754 | 0.501 | 1e-101 | |
| 225444698 | 650 | PREDICTED: adipocyte plasma membrane-ass | 0.966 | 0.535 | 0.501 | 1e-101 | |
| 225444696 | 365 | PREDICTED: adipocyte plasma membrane-ass | 0.905 | 0.893 | 0.523 | 1e-100 | |
| 297738546 | 382 | unnamed protein product [Vitis vinifera] | 0.905 | 0.853 | 0.523 | 1e-99 | |
| 357450079 | 372 | Adipocyte plasma membrane-associated pro | 0.913 | 0.884 | 0.514 | 2e-98 | |
| 388499476 | 372 | unknown [Medicago truncatula] | 0.913 | 0.884 | 0.514 | 4e-98 | |
| 357450077 | 352 | Adipocyte plasma membrane-associated pro | 0.913 | 0.934 | 0.504 | 5e-96 | |
| 388492006 | 352 | unknown [Medicago truncatula] | 0.913 | 0.934 | 0.498 | 4e-95 |
| >gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/342 (53%), Positives = 250/342 (73%), Gaps = 14/342 (4%)
Query: 32 LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSAT-QLQDFIKVGEGSVNHPEDASMDKNG 90
++VCL+AF+ QI YFSPISP L ++P P L QLQ+ IK+GEG + PED MDK+G
Sbjct: 12 VVVCLLAFIFQIYYFSPISPDLLQLPAPFFLPPNKQLQEVIKLGEGFIQGPEDVCMDKDG 71
Query: 91 VIYTATRDGWIKRL-QDGTWVNWKFIDSH------------LIICDNANGLHKVSEDGVE 137
V+YTA RD WIKR+ ++G+W NWK IDS LI+CD GL KV+EDGV
Sbjct: 72 VLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDADTGLLKVTEDGVT 131
Query: 138 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN 197
S VNGSK++FA+D +E+SDG++YF+V S+K+ H + LD+LE +PHGQLLKYDP+SN
Sbjct: 132 VLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLKYDPTSN 191
Query: 198 ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 257
T+++ DG F NGVALS +EDY+V CESWKFRC+K+WLKGE KGK ET +NLPGAPDN
Sbjct: 192 QTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKTETLIDNLPGAPDN 251
Query: 258 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG 317
INLAPDG+FWI ++++ A ++ +++SK KH++A++PKL + A +++VA DG
Sbjct: 252 INLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVNVAADG 311
Query: 318 TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
I R DP G+++SFVTS ++ D HLY+ SL +NF+GK+ L
Sbjct: 312 KITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 251/364 (68%), Gaps = 23/364 (6%)
Query: 15 GRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA------TQLQ 68
G SK + C SF +L ++A LQI +FSPISP D + P V +A +LQ
Sbjct: 6 GFRPSKQHLQTCSSF--VLASILASTLQIYFFSPISP--DPLHLPPVSAAINLPTNNKLQ 61
Query: 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSH--------- 118
+ K+GEG +N PED D+ G++YTATRDGWIKRL ++G+W +WK I +
Sbjct: 62 EVTKIGEGFLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTAR 121
Query: 119 ---LIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 175
+ +CD GL KV EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+ H
Sbjct: 122 AGGIFVCDAQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHH 181
Query: 176 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 235
+ LD+LE KPHGQLLKYDP N T+++ D F NGVALS+DED++VVCE+WKFRC KYW
Sbjct: 182 WYLDLLEAKPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYW 241
Query: 236 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295
LKGERKG+ ETF +NLP PDNINLAPDG+FWIA+IKL + + +++SK +KH LA +P
Sbjct: 242 LKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFP 301
Query: 296 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 355
KLF A ++ VA DG I+ DP G++MSFVTS L+ ++HLY+ SL +NFIG
Sbjct: 302 KLFQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIG 361
Query: 356 KVQL 359
K+ L
Sbjct: 362 KLPL 365
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 250/367 (68%), Gaps = 19/367 (5%)
Query: 11 TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
T G SK + AC SF L +AF LQI +FSPISP +P + ++ +
Sbjct: 95 TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 152
Query: 67 LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSH------- 118
LQ+ K+GEG ++ PED D G++YTATRDGWIKRL ++G+W +W+ I
Sbjct: 153 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 212
Query: 119 -----LIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 173
+++CD GL KV EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+
Sbjct: 213 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 272
Query: 174 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 233
H++ LD+LE KPHGQLLKYDP N T+++ D FANGVALS+DED++VVCE+WKFRC K
Sbjct: 273 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 332
Query: 234 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 293
YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L M +++SK KH++A
Sbjct: 333 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 392
Query: 294 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 353
+PKL + A ++ V DG +++ DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 393 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 452
Query: 354 IGKVQLS 360
IGK+ L+
Sbjct: 453 IGKLPLT 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 250/367 (68%), Gaps = 19/367 (5%)
Query: 11 TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
T G SK + AC SF L +AF LQI +FSPISP +P + ++ +
Sbjct: 284 TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 341
Query: 67 LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSH------- 118
LQ+ K+GEG ++ PED D G++YTATRDGWIKRL ++G+W +W+ I
Sbjct: 342 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 401
Query: 119 -----LIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 173
+++CD GL KV EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+
Sbjct: 402 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 461
Query: 174 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 233
H++ LD+LE KPHGQLLKYDP N T+++ D FANGVALS+DED++VVCE+WKFRC K
Sbjct: 462 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 521
Query: 234 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 293
YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L M +++SK KH++A
Sbjct: 522 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 581
Query: 294 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 353
+PKL + A ++ V DG +++ DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 582 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 641
Query: 354 IGKVQLS 360
IGK+ L+
Sbjct: 642 IGKLPLT 648
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 249/344 (72%), Gaps = 18/344 (5%)
Query: 32 LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
+L C++A LQI FSPISP L ++PQP A+L+ +LQ+ K+GEG ++ PED D
Sbjct: 21 ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 80
Query: 89 NGVIYTATRDGWIKRL-QDGTWVNWKFI------------DSHLIICDNANGLHKVSEDG 135
G++YTATRDGWIKRL ++G+W +W+ I +I+CD GL KV EDG
Sbjct: 81 EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 140
Query: 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195
V S+VNGSK++FANDV+EA+DGS+YF+V+S++++ + LD+LE KPHGQLLKYDP
Sbjct: 141 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 198
Query: 196 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 255
N T+++ D FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLPG P
Sbjct: 199 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 258
Query: 256 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 315
DN+NLAPDG+FWIA+IK+ + + +++SK +KH+LA +PKLF A ++ VA
Sbjct: 259 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 318
Query: 316 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
DG II DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 319 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 249/344 (72%), Gaps = 18/344 (5%)
Query: 32 LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
+L C++A LQI FSPISP L ++PQP A+L+ +LQ+ K+GEG ++ PED D
Sbjct: 38 ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 97
Query: 89 NGVIYTATRDGWIKRL-QDGTWVNWKFI------------DSHLIICDNANGLHKVSEDG 135
G++YTATRDGWIKRL ++G+W +W+ I +I+CD GL KV EDG
Sbjct: 98 EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 157
Query: 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195
V S+VNGSK++FANDV+EA+DGS+YF+V+S++++ + LD+LE KPHGQLLKYDP
Sbjct: 158 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 215
Query: 196 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 255
N T+++ D FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLPG P
Sbjct: 216 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 275
Query: 256 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 315
DN+NLAPDG+FWIA+IK+ + + +++SK +KH+LA +PKLF A ++ VA
Sbjct: 276 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 335
Query: 316 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
DG II DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 336 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 248/346 (71%), Gaps = 17/346 (4%)
Query: 31 FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
+L L+A +Q+ YFSPI PV+ E+P A + QLQ+ IK+GEG + PED +
Sbjct: 23 LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82
Query: 87 DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSH------------LIICDNANGLHKVSE 133
DKNGV+YTATRDGWIKR+ ++ W NWK IDS LI+CD + GL KV+E
Sbjct: 83 DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142
Query: 134 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193
DG LS VNGS+L FA+DV+EASDG++YF+V S+K+ H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202
Query: 194 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG 253
P+ N T +V D FANGVALS+DEDYVVVCE+WKFRC ++WLKG GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIENLPG 262
Query: 254 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 313
PDNINLAPDG+FWIA+++L ++R+ +++S + KH+LA++P+L + + A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322
Query: 314 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
+G IIR D G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 248/346 (71%), Gaps = 17/346 (4%)
Query: 31 FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
+L L+A +Q+ YFSPI PV+ E+P A + QLQ+ IK+GEG + PED +
Sbjct: 23 LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82
Query: 87 DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSH------------LIICDNANGLHKVSE 133
DKNGV+YTATRDGWIKR+ ++ W NWK IDS LI+CD + GL KV+E
Sbjct: 83 DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142
Query: 134 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193
DG LS VNGS+L FA+DV+EASDG++YF+V S+K+ H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202
Query: 194 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG 253
P+ N T +V D FANGVALS+DEDYVVVCE+WKFRC ++WLKG GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIENLPG 262
Query: 254 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 313
PDNINLAPDG+FWIA+++L ++R+ +++S + KH+LA++P+L + + A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322
Query: 314 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
+G IIR D G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 240/343 (69%), Gaps = 14/343 (4%)
Query: 31 FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
+L L+A +Q+ YFSPI PV E+P + QLQ IK+GEG + PED +DK+
Sbjct: 7 LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66
Query: 90 GVIYTATRDGWIKRL-QDGTWVNWKFIDSH------------LIICDNANGLHKVSEDGV 136
GV+YTATRDGWIKR+ ++ W NWK IDS LI+CD GL KV+EDG
Sbjct: 67 GVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126
Query: 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196
LS VNGS+L FA+D++EASDG++YF+V S+K+ H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186
Query: 197 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD 256
N T +V D FANGVALS+DEDY+VVCE+WKFRC K+WLKG KGK E F ENLP PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246
Query: 257 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 316
NINLAPDG+FWIA+I++ + RM +++SK+ KH++A +P+L + ++ A ++ V +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTKSAMVVKVTTE 306
Query: 317 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
G II+ D G+ ++FVTS ++ +++LY+ SL ++F+GK L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 240/343 (69%), Gaps = 14/343 (4%)
Query: 31 FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
+L L+A +Q+ YFSPI PV E+P + QLQ IK+GEG + PED +DK+
Sbjct: 7 LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66
Query: 90 GVIYTATRDGWIKRL-QDGTWVNWKFIDSH------------LIICDNANGLHKVSEDGV 136
GV+YTATRDGWIKR+ ++ W NWK +DS LI+CD GL KV+EDG
Sbjct: 67 GVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126
Query: 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196
LS VNGS+L FA+D++EASDG++YF+V S+K+ H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186
Query: 197 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD 256
N T +V D FANGVALS+DEDY+VVCE+WKFRC K+WLKG KGK E F ENLP PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246
Query: 257 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 316
NINLAPDG+FWIA+I++ + RM +++SK+ K+++A +P+L + ++ A ++ V +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTKSAMVVKVTTE 306
Query: 317 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359
G II+ D G+ ++FVTS ++ +++LY+ SL ++F+GK L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2081830 | 370 | SSL4 "strictosidine synthase-l | 0.661 | 0.643 | 0.327 | 3.6e-42 | |
| TAIR|locus:2081860 | 371 | AT3G51440 [Arabidopsis thalian | 0.661 | 0.641 | 0.348 | 9.5e-42 | |
| TAIR|locus:2081845 | 371 | YLS2 "YELLOW-LEAF-SPECIFIC GEN | 0.661 | 0.641 | 0.327 | 6.6e-41 | |
| TAIR|locus:2081875 | 371 | AT3G51450 [Arabidopsis thalian | 0.661 | 0.641 | 0.323 | 3.1e-37 | |
| RGD|1308874 | 376 | Apmap "adipocyte plasma membra | 0.661 | 0.632 | 0.338 | 2.7e-36 | |
| UNIPROTKB|F1LLW3 | 386 | RGD1308874 "Protein RGD1308874 | 0.661 | 0.616 | 0.338 | 2.7e-36 | |
| UNIPROTKB|Q3T0E5 | 412 | APMAP "Adipocyte plasma membra | 0.661 | 0.577 | 0.326 | 1.2e-35 | |
| MGI|MGI:1919131 | 415 | Apmap "adipocyte plasma membra | 0.661 | 0.573 | 0.330 | 1.9e-35 | |
| UNIPROTKB|E2RPE9 | 415 | APMAP "Uncharacterized protein | 0.661 | 0.573 | 0.326 | 3.1e-35 | |
| UNIPROTKB|Q5ZIF1 | 415 | APMAP "Adipocyte plasma membra | 0.661 | 0.573 | 0.330 | 1e-34 |
| TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 81/247 (32%), Positives = 134/247 (54%)
Query: 115 IDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 172
+ +I+ D GL +S+ G E +G + + + V A +G LYFT +SSKY
Sbjct: 122 LHGEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKYD 181
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+++ D LEGKPHG+++ +DP++ T ++ YFANG+++S D+ + V CE+ RC
Sbjct: 182 FYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCS 241
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292
KY++ ER +E F + LPG PDNI DG +WIA+I K+ ++ ++
Sbjct: 242 KYYISEER---VEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIY 298
Query: 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352
K + +++ A ++ V DG I D S +TSG+++ NHLY SL +
Sbjct: 299 MAAKYGVELLSIKNAA-VLQVDLDGNPIAMYHDHP---FSHITSGVKIGNHLYFGSLLHS 354
Query: 353 FIGKVQL 359
+I ++ L
Sbjct: 355 YITRLDL 361
|
|
| TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 86/247 (34%), Positives = 135/247 (54%)
Query: 115 IDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 172
I +I+ D GL +S DG E +G + + + V A +G LYFT S KY
Sbjct: 122 IHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYN 181
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
H++ DILEGKPHG+L+ +DP++ +T ++ YFANGV+LS D+ ++V CE+ RC
Sbjct: 182 LHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCS 241
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292
KY++ G G++E F + LPG PDNI DG +WIA+ K+ ++ + A
Sbjct: 242 KYYING---GRVELFIQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITA 298
Query: 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352
K + + + A ++ V DG I D Q +S +T+G+++ N+LY SL +
Sbjct: 299 MAAKYGYEPMFMEN-AGVLQVDLDGNPIAYYHD---QALSHITTGVKIGNYLYCGSLWHS 354
Query: 353 FIGKVQL 359
I ++ L
Sbjct: 355 HILRLDL 361
|
|
| TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 81/247 (32%), Positives = 136/247 (55%)
Query: 115 IDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 172
+ +I+ D GL +S DG E G K + + V A +G LYFT +S KY
Sbjct: 122 VHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKYT 181
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
H+ DILEGKPHG+L+ +DP++ +T ++ YFANGV++S D+ +++ CE+ RC
Sbjct: 182 LHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRCS 241
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292
KY++ ER +E F + LPG PDNI DG +WIA++ + ++ ++ + A
Sbjct: 242 KYYINEER---VEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITA 298
Query: 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352
K + + + A ++ V DG I D Q +S +T+G+++ N+LY ++ +
Sbjct: 299 IAAKYGVELMFMKN-AGVLQVDLDGNPIAYYHD---QRLSHITTGIKIGNYLYCGNILHS 354
Query: 353 FIGKVQL 359
+I ++ L
Sbjct: 355 YIIRLDL 361
|
|
| TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 80/247 (32%), Positives = 129/247 (52%)
Query: 115 IDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 172
I +I+ D GL +S DG E +G K + + V A +G LYFT +S KY
Sbjct: 122 IHGEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKYT 181
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
++ LD+LEGKP G+LL +DP++ +T ++ YFANG+ +S D+ +++ CE+ RC
Sbjct: 182 LNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRCS 241
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292
KY++ ER +E F ++LPG PDNI DG +WIA+ I ++ + A
Sbjct: 242 KYYISEER---VEVFTQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLTA 298
Query: 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352
K + + A ++ V DG I DP +S + + ++ +LY SL+ +
Sbjct: 299 MVAK-YGVDLMFMENAGVLQVDLDGNPIAYYHDPK---LSHIATCDKIGKYLYCGSLSQS 354
Query: 353 FIGKVQL 359
I ++ L
Sbjct: 355 HILRLDL 361
|
|
| RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 86/254 (33%), Positives = 136/254 (53%)
Query: 119 LIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYL 172
L + D GL +V+ V+ LS + G K+ F ND+ DG +YFT SSSK+
Sbjct: 123 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQ 182
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R
Sbjct: 183 RRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIR 242
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIK 288
+ ++ G KG + F EN+PG PDNI + G +W+A + A + L+ IK
Sbjct: 243 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 302
Query: 289 HVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
++ KLFSQ + ++ V++ G R+L DP GQ++++V+ + D +LY
Sbjct: 303 RMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLY 359
Query: 346 VISLTSNFIGKVQL 359
+ S S FI ++ L
Sbjct: 360 LGSFRSPFICRLSL 373
|
|
| UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 86/254 (33%), Positives = 136/254 (53%)
Query: 119 LIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYL 172
L + D GL +V+ V+ LS + G K+ F ND+ DG +YFT SSSK+
Sbjct: 133 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQ 192
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R
Sbjct: 193 RRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIR 252
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIK 288
+ ++ G KG + F EN+PG PDNI + G +W+A + A + L+ IK
Sbjct: 253 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 312
Query: 289 HVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
++ KLFSQ + ++ V++ G R+L DP GQ++++V+ + D +LY
Sbjct: 313 RMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLY 369
Query: 346 VISLTSNFIGKVQL 359
+ S S FI ++ L
Sbjct: 370 LGSFRSPFICRLSL 383
|
|
| UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 338 (124.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 83/254 (32%), Positives = 139/254 (54%)
Query: 119 LIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYL 172
L + D GL +V+ + V+ LS + G K+ F ND+ DG +YFT SSSK+
Sbjct: 162 LFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQ 221
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+Y L ++EG G+LL+YD + ++ D F NGV LS ED+V+V E R R
Sbjct: 222 RRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIR 281
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIK 288
++++ G KG + F ENLPG PDNI + G +W+++ + A + L+ +K
Sbjct: 282 RFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLK 341
Query: 289 HVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
V+ KLFSQ + ++ +++ GT +R+L DP GQ++++V+ + HLY
Sbjct: 342 KVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLY 398
Query: 346 VISLTSNFIGKVQL 359
+ S + ++ +++L
Sbjct: 399 LGSFRAPYLCRLRL 412
|
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| MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 84/254 (33%), Positives = 135/254 (53%)
Query: 119 LIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYL 172
L + D GL +V+ V+ LS + G K+ F ND+ DG +YFT SSSK+
Sbjct: 162 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQ 221
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+Y L ++E G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R
Sbjct: 222 RRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIR 281
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIK 288
+ ++ G KG + F EN+PG PDNI + G +W+A + A + L+ IK
Sbjct: 282 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 341
Query: 289 HVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
++ K+FSQ + ++ V++ G R+L DP GQ++++V+ + D +LY
Sbjct: 342 RMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLY 398
Query: 346 VISLTSNFIGKVQL 359
+ S S FI ++ L
Sbjct: 399 LGSFRSPFICRLSL 412
|
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| UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 83/254 (32%), Positives = 137/254 (53%)
Query: 119 LIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDGS-LYFTVSSSKYL 172
L + D GL +V+ + V+ +S + G K+ F ND+ DG +YFT SSSK+
Sbjct: 162 LFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKKIYFTDSSSKWQ 221
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
+Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R
Sbjct: 222 RRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFVLVAETTMARIR 281
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIK 288
++++ G KG + F ENLPG PDNI + G +W+ + + + + L+ IK
Sbjct: 282 RFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSMLDFLSERPYIK 341
Query: 289 HVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
++ KLFSQ + ++ ++ G R+L DPTGQ+ S+V+ + + HLY
Sbjct: 342 RMIF---KLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYVSEVHEYNGHLY 398
Query: 346 VISLTSNFIGKVQL 359
+ S + F+ ++ L
Sbjct: 399 LGSFRAPFLCRLSL 412
|
|
| UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 84/254 (33%), Positives = 138/254 (54%)
Query: 119 LIICDNANGLHKVSED-GVENFL----SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL 172
L + D GL++V+ G L + + G KL F ND+ DG +YFT SSSK+
Sbjct: 162 LFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQ 221
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
++ ++EG G+LL+YD + ++ G F NGV LS ED+V+V E+ R R
Sbjct: 222 RRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIR 281
Query: 233 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA--IIKLDA--RRMKILNSSKLIK 288
+Y++ G KG + F EN+PG PDNI L+ G +W+A +++ + + L+ IK
Sbjct: 282 RYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIK 341
Query: 289 HVLAAYPKLFSQ-FIT--LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
++ KL SQ +T L + ++ ++E G+ R+ DPTG + +V+ + + +LY
Sbjct: 342 RMIF---KLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLY 398
Query: 346 VISLTSNFIGKVQL 359
+ S S FI ++ L
Sbjct: 399 LGSFRSPFICRLNL 412
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016422001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| pfam03088 | 89 | pfam03088, Str_synth, Strictosidine synthase | 4e-27 | |
| COG3386 | 307 | COG3386, COG3386, Gluconolactonase [Carbohydrate t | 3e-22 | |
| pfam08450 | 245 | pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re | 4e-10 | |
| pfam01731 | 86 | pfam01731, Arylesterase, Arylesterase | 0.001 |
| >gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-27
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 155 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 214
V+ G LYFT SSS+Y + +LEG G+L+KYDPS+ +T ++ YF NG+AL
Sbjct: 5 VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64
Query: 215 SRDEDYVVVCESWKFRCRKYWLKGE 239
S D +V+ CE+ R KYW+KG
Sbjct: 65 SPDGSFVLFCETPMKRISKYWIKGP 89
|
Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89 |
| >gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 3e-22
Identities = 54/234 (23%), Positives = 80/234 (34%), Gaps = 37/234 (15%)
Query: 56 VPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK 113
P L +GEG V P+ +++ G I RL G +
Sbjct: 13 TAAPVTLLDKGAT----LGEGPVWDPDR-----GALLWVDILGGRIHRLDPETGKKRVFP 63
Query: 114 FIDSH-LIICDNANGLHKVSEDGVENF-----------LSYVNGSKLRFANDVVEASDGS 161
+A G E GV +G L ND V DG
Sbjct: 64 SPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR 123
Query: 162 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221
++F + L E +P G L + DP + L+ D NG+A S D +
Sbjct: 124 IWFG------DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL 177
Query: 222 VVCESWKFRCRKYWL------KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269
V ++ R +Y L G R+G + + PG PD + + DG W+A
Sbjct: 178 YVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDADGNLWVA 229
|
Length = 307 |
| >gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203
+ RF ND DG +F DI G G L + DP + V
Sbjct: 81 DEPLNRF-NDGKVDPDGRFWFGT---------MGFDIAPGGEPGALYRLDPDGKVE-RVL 129
Query: 204 DGFYFANGVALSRDEDYVVVCESWKFRCRKY--WLKGERKGKLETFA--ENLPGAPDNIN 259
DG +NG+A S D + +S R + G FA ++ G PD +
Sbjct: 130 DGITISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMA 189
Query: 260 LAPDGTFWIAI 270
+ +G W+A
Sbjct: 190 VDAEGNVWVAR 200
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This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245 |
| >gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211
ND+V S Y T P L++ G ++ Y PS VA GF FANG
Sbjct: 1 NDIVAVGPDSFYATNDHYFGDPFLQNLEMYLGLIWTGVVYYSPSEVKV--VASGFSFANG 58
Query: 212 VALSRDEDYVVVCES 226
+ S D+ Y+ V S
Sbjct: 59 INYSPDKKYIYVASS 73
|
This family consists of arylesterases (Also known as serum paraoxonase) EC:3.1.1.2. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity. Human arylesterase (PON1) is associated with HDL and may protect against LDL oxidation. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 100.0 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.96 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.95 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 99.85 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.82 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.76 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.7 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 99.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.54 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.44 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.27 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.24 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 99.13 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 99.09 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.02 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.99 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.94 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.94 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.93 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.91 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.87 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.86 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.86 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.78 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.7 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 98.69 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 98.64 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.61 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.39 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.36 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.33 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.26 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.26 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.24 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.21 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.19 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.16 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.09 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.09 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.08 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.07 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.04 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.04 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.03 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.02 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.91 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.82 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.78 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.72 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.7 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.67 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.66 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.64 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.6 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.6 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.47 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.46 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.44 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.43 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.42 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.4 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.4 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.37 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.37 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.3 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.29 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.25 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.22 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.21 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.15 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.11 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.07 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.07 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.06 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.06 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.06 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.05 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 96.96 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.93 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.86 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 96.85 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 96.83 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.8 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.79 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 96.79 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.79 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.75 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 96.7 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 96.62 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.6 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.58 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.49 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 96.45 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.45 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 96.34 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.34 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.31 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 96.24 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 96.13 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.13 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.98 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 95.94 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.93 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 95.92 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 95.82 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.74 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.63 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.56 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 95.5 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.4 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 95.28 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.24 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.24 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.17 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.12 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.07 | |
| PTZ00421 | 493 | coronin; Provisional | 95.06 | |
| PTZ00420 | 568 | coronin; Provisional | 95.05 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 94.98 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 94.8 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 94.72 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 94.55 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.52 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.47 | |
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 94.27 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 94.19 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 94.15 | |
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 94.05 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 94.02 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 93.99 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 93.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 93.62 | |
| PTZ00421 | 493 | coronin; Provisional | 93.49 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 93.42 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.15 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 93.14 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 93.01 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.0 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 92.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 92.83 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 92.78 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 92.6 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 92.54 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 92.44 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 92.42 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 92.31 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 92.27 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 91.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 91.86 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.74 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 91.74 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.71 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 91.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 91.63 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 91.63 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.24 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 91.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 91.08 | |
| PTZ00420 | 568 | coronin; Provisional | 90.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 90.71 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.62 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 90.43 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 90.36 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 90.16 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 90.16 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 90.06 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 90.03 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 89.99 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.96 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.71 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 89.09 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 88.9 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 88.49 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 88.31 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 88.21 | |
| PF11763 | 123 | DIPSY: Cell-wall adhesin ligand-binding C-terminal | 88.12 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 88.01 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 87.63 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 87.56 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.49 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 87.39 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 86.83 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 86.74 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 86.11 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 85.84 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 85.62 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 85.45 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 85.14 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 84.91 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 84.8 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 84.75 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 84.69 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 84.65 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 83.57 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 83.36 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.26 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 83.26 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 83.04 | |
| PRK10115 | 686 | protease 2; Provisional | 82.57 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 82.45 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 82.43 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 82.24 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 81.55 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 80.75 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 80.66 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 80.3 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.28 |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=348.06 Aligned_cols=299 Identities=31% Similarity=0.550 Sum_probs=255.3
Q ss_pred ccchhcccceEecCCCCC-CcceEEEcCCCCEEEEecCCeEEEEEC-C--------------------eeeEEE--ecCC
Q 018144 62 LSATQLQDFIKVGEGSVN-HPEDASMDKNGVIYTATRDGWIKRLQD-G--------------------TWVNWK--FIDS 117 (360)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~-~Pe~i~~d~~G~l~v~~~~G~I~~~~~-g--------------------~~~~~~--~~~g 117 (360)
.+++.+...+.+..+... +|+.++.|.+-.+|.|...|.|-+.+. . +.-.++ ..+|
T Consensus 48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~gg 127 (376)
T KOG1520|consen 48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGG 127 (376)
T ss_pred ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCC
Confidence 556656666655544454 444444443334788888898877651 0 000111 2245
Q ss_pred eEEEEeCCCcEEEEcC-CC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 118 HLIICDNANGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 118 ~L~v~~~~~gl~~~~~-~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.|||||++.|++.++. .| .+.+++..++.++.+.|+++++++|.|||||+|++|+++++.+++++++++||+++||+.
T Consensus 128 dL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~ 207 (376)
T KOG1520|consen 128 DLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS 207 (376)
T ss_pred eEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCc
Confidence 8999999999999994 55 777788889999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch
Q 018144 196 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA 275 (360)
Q Consensus 196 tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~ 275 (360)
|+..+++.+++.+|||+++++|++++++||+...||.||+++|++.++.++|++++||+||||..+++|++||++...|+
T Consensus 208 tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~ 287 (376)
T KOG1520|consen 208 TKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS 287 (376)
T ss_pred ccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hHHHHhhcchhHHHHHHhCCcccccccc----CCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 276 RRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
...+++.++|++|+++.++|........ ..++..|.+.|.+|+++++++|++|.....++.+.|++|+||+||+..
T Consensus 288 ~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~ 367 (376)
T KOG1520|consen 288 TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFN 367 (376)
T ss_pred hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCc
Confidence 9999999999999999999766543221 223477888889999999999999998888999999999999999999
Q ss_pred CeEEEEeCC
Q 018144 352 NFIGKVQLS 360 (360)
Q Consensus 352 ~~i~~~~l~ 360 (360)
++|++++|.
T Consensus 368 p~i~~lkl~ 376 (376)
T KOG1520|consen 368 PYIARLKLP 376 (376)
T ss_pred ceeEEEecC
Confidence 999999984
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=206.75 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=170.0
Q ss_pred cceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeEEE---------e-cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccC
Q 018144 81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWK---------F-IDSHLIICDNANGLHKVS-EDG-VENFLSYVN 144 (360)
Q Consensus 81 Pe~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~~~---------~-~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~ 144 (360)
||++++|+ +|.||+.+ .++.|++++ +++.+.+. . .+|+|||++. .++..++ .++ ++.+.....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccC
Confidence 79999997 99999999 789999999 44433221 2 4789999985 5677778 778 777766543
Q ss_pred Cc-cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 145 GS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 145 ~~-~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
+. .+..||++++|++|+|||||+...... ....|+|++++++ ++++.+..++..||||++++|++.||+
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEE
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheee
Confidence 43 678999999999999999997632110 0011789999998 888888888999999999999999999
Q ss_pred EeCCCCEEEEEEecCC--cCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 224 CESWKFRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~--~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
+++..++|++|+++.. .....+.+.+. ..+.|||+++|.+|+|||+.+.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------------------------- 203 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------------------------- 203 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------------------------
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------------------------
Confidence 9999999999999743 24455555432 2346999999999999999987
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--C-CEEEEEeC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISL 349 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~Lylgs~ 349 (360)
.+.|.+++++|+++..+..|.. .++++++. + ++|||.+-
T Consensus 204 -------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 -------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred -------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 4799999999999999988732 57888885 3 78999874
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=201.04 Aligned_cols=237 Identities=27% Similarity=0.413 Sum_probs=176.9
Q ss_pred hhcccceEecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEEe-----------cCCeEEEEeCCCcEEE
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-----------IDSHLIICDNANGLHK 130 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~~-----------~~g~L~v~~~~~gl~~ 130 (360)
..+.....+++++++.|+ .+.||+.+ .+++|.+++ +|+.+.+.. .+|+|+++. .|+..
T Consensus 18 ~~~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~ 89 (307)
T COG3386 18 TLLDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRL 89 (307)
T ss_pred eEeecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEE
Confidence 445556667777776664 66677777 889999999 576665543 356677765 45555
Q ss_pred Ec-CCC-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-C
Q 018144 131 VS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F 206 (360)
Q Consensus 131 ~~-~~g-~-~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l 206 (360)
++ +++ . +.+++..++.+.+.+|++.++++|.+||+|.+. +. ....+..+.|.||++||. ++++.+..+ +
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~ 162 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD-GGVVRLLDDDL 162 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC-CCEEEeecCcE
Confidence 66 555 5 777777777778999999999999999999873 11 222344567899999996 555555555 9
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEec---CCcCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLK---GERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 282 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~---g~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~ 282 (360)
..||||++||||+.+|+++|..++|++|+.+ +...+. ..++.+..+|.|||+++|.+|+||++....
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------- 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------- 233 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------
Confidence 9999999999999999999999999999987 332222 123344567999999999999999643331
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeCCCCe
Q 018144 283 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSNF 353 (360)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~~~~~ 353 (360)
.++|.+++|+|+.+..+..|.. .+++..+.+ ++||+.+...+.
T Consensus 234 ------------------------g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 234 ------------------------GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ------------------------CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence 2489999999999999998863 466667765 889999987743
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=142.76 Aligned_cols=88 Identities=52% Similarity=0.965 Sum_probs=74.6
Q ss_pred ccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 152 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 152 n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
|+++++++ |.|||||+|++|.++++..+++++.++|+|++|||.|++++++.+++.+||||++++|+++++|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 018144 231 CRKYWLKGE 239 (360)
Q Consensus 231 i~~~~~~g~ 239 (360)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=146.59 Aligned_cols=227 Identities=17% Similarity=0.137 Sum_probs=169.6
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEE------------ecCCeEEEEeCCCcEEEEc-CCC-
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK------------FIDSHLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~------------~~~g~L~v~~~~~gl~~~~-~~g- 135 (360)
.+...-.+|..++.++||.+|++. ..|.|-++| +|+++.+. .++|..||++...+|.+++ ++.
T Consensus 56 fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e 135 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLE 135 (353)
T ss_pred eccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccc
Confidence 443334799999999999999988 677889999 78776542 3578899999888999999 677
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVAL 214 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~ 214 (360)
++.+.-..+.. -...|...+|++|++|||-.. |---++||.++.++++.. ....|+||+.
T Consensus 136 vt~f~lp~~~a-~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 136 VTRFPLPLEHA-DANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred eEEeecccccC-CCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEE
Confidence 77764322111 123567789999999998532 333488998888877643 4567999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~ 292 (360)
.+||+ +|+++-.++.|.++|+.. +..+++... +..-...|-.|+.|++|+++++
T Consensus 197 tpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg-------------------- 252 (353)
T COG4257 197 TPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-------------------- 252 (353)
T ss_pred CCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccC--------------------
Confidence 99997 888887788899998743 344444311 1112345778999999999987
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEEe
Q 018144 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~ 358 (360)
.+.+.+|||.-+.-..|..|.-. ....++..++ |++|+.....++|.|++
T Consensus 253 --------------~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 253 --------------TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred --------------CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence 47899999988877788777643 3455566665 99999999999999986
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-16 Score=161.80 Aligned_cols=234 Identities=19% Similarity=0.278 Sum_probs=164.9
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCeeeEE-------------------------Ee--cCCeEEEEeCC
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNW-------------------------KF--IDSHLIICDNA 125 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~~~~-------------------------~~--~~g~L~v~~~~ 125 (360)
.++..|.++++|. +|.||+++ .+++|.+++ +|+.... .. .++.|||+|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4578999999996 68899999 788999998 6643211 11 13459999987
Q ss_pred C-cEEEEc-CCC-eEEEeec------cCC------ccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 126 N-GLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 126 ~-gl~~~~-~~g-~~~l~~~------~~~------~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
+ .+.+++ .++ ++.++.. ..+ ..++.|.++++++ +|.+||+|.. +++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence 4 566788 667 6666421 111 1256899999998 7799999865 4567
Q ss_pred EEEcCCCCeEEEEe---------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcce----------
Q 018144 190 LKYDPSSNITTLVA---------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL---------- 244 (360)
Q Consensus 190 ~~~d~~tg~~~~~~---------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~---------- 244 (360)
+++|+.++.+..+. ..+..|+||++++|++.+||+++.+++|.+|++++......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 77777666554332 12567999999999999999999999999999864321100
Q ss_pred -eeecc-------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 018144 245 -ETFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 316 (360)
Q Consensus 245 -~~~~~-------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 316 (360)
..+.+ ..-..|.++++|++|++||+... .+.|.++|++
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~ 833 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPA 833 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECC
Confidence 00000 01125899999999999999987 3688999987
Q ss_pred CcEEEEEeCC------CC----CcccceeeEEEE-CCEEEEEeCCCCeEEEEeCC
Q 018144 317 GTIIRNLVDP------TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 317 g~~~~~~~~~------~g----~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l~ 360 (360)
+..+..+... +| ..++.+.++..+ +|+||+++..+++|.+++++
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6554443211 11 124567777776 58999999999999999863
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-15 Score=126.61 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=166.1
Q ss_pred ccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEE---------------ecCCeEEEEeCCCcEE-
Q 018144 68 QDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK---------------FIDSHLIICDNANGLH- 129 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~---------------~~~g~L~v~~~~~gl~- 129 (360)
.++++++.+.-..|..|.+++||..|+.+....|.|++ +.+++.|. +..|+||.... .|.+
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yG 171 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYG 171 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccce
Confidence 56677777777899999999999999998666899998 66666553 23578888553 3333
Q ss_pred EEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--C
Q 018144 130 KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G 205 (360)
Q Consensus 130 ~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~ 205 (360)
++| ..+ ++++... .| ..|++|++.+||.+|++.- ..+.|.++||.++..+++.. .
T Consensus 172 rLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~ 230 (353)
T COG4257 172 RLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNA 230 (353)
T ss_pred ecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCc
Confidence 566 455 6666433 22 4699999999999999732 24579999998886665532 2
Q ss_pred -CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC---CCceeEEcCCCCEEEEEecCchhHHHHh
Q 018144 206 -FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPDGTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 206 -l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g---~pd~i~~d~~G~lwva~~~~~~~~~~~~ 281 (360)
-....+|-.++.|. +|+++.++.++++|++.... ...+. +|+ .|+.+.+|..|++|.+...
T Consensus 231 ~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eyp--LPgs~arpys~rVD~~grVW~sea~--------- 295 (353)
T COG4257 231 LKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYP--LPGSKARPYSMRVDRHGRVWLSEAD--------- 295 (353)
T ss_pred ccccccccccCccCc-EEEeccCCceeeEeCccccc---ceeee--CCCCCCCcceeeeccCCcEEeeccc---------
Confidence 12334577788886 99999999999999985432 22231 333 6899999999999998887
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|.+||+....+.+|..+... ...+..+ .|.+|++...-+.+.+++
T Consensus 296 -------------------------agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 296 -------------------------AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred -------------------------cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence 47899999999999999876542 2233333 489999999999888775
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=113.13 Aligned_cols=221 Identities=17% Similarity=0.190 Sum_probs=141.5
Q ss_pred ceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeE----------EEe--cCC-eEEEEeCCCc--EEEEc-CCC-eEEEe
Q 018144 82 EDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVN----------WKF--IDS-HLIICDNANG--LHKVS-EDG-VENFL 140 (360)
Q Consensus 82 e~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~----------~~~--~~g-~L~v~~~~~g--l~~~~-~~g-~~~l~ 140 (360)
|++.+|. .+.||..+ ..|.|.|+| ..++.. +.. .++ ..++...+.. +...+ ... ..++.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~ 97 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYR 97 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeee
Confidence 3334553 45555555 889999987 333221 111 121 2455554443 33333 122 23332
Q ss_pred e---ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC
Q 018144 141 S---YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 217 (360)
Q Consensus 141 ~---~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d 217 (360)
+ ..+....+..|+--+||+|+.|....+.. -+.+|- ..|.|++.-+ .++++.+...+..+||++++.|
T Consensus 98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~-------~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d 168 (310)
T KOG4499|consen 98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADF-------GDDLEP-IGGELYSWLA-GHQVELIWNCVGISNGLAWDSD 168 (310)
T ss_pred eccccCchHHhcccccCccCCCCceeeeeeccc-------cccccc-cccEEEEecc-CCCceeeehhccCCcccccccc
Confidence 2 22233345678889999999988643310 011221 1345665554 4888888888999999999999
Q ss_pred CCEEEEEeCCCCEEEEEE--ecCCcCcceeeeccC------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 018144 218 EDYVVVCESWKFRCRKYW--LKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~--~~g~~~~~~~~~~~~------~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
.+.+|+.++.+..|..|+ ..++...+.+++.+. .+-.|||+++|.+|+|||+++.
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----------------- 231 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----------------- 231 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------
Confidence 999999999999996655 444434333333221 2237999999999999999998
Q ss_pred HHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeC
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 349 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~ 349 (360)
.+.|+++|| .|+++..+.-|. ..+|++.+.+ +.||+...
T Consensus 232 -----------------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 -----------------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred -----------------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 479999998 699998887764 4688888875 45777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=136.94 Aligned_cols=177 Identities=17% Similarity=0.285 Sum_probs=122.3
Q ss_pred CCCcceEEEcCCC-CEEEEe-cCCeEEEEE--CCeeeEE---------------------------E-e-cCCeEEEEeC
Q 018144 78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNW---------------------------K-F-IDSHLIICDN 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G-~l~v~~-~~G~I~~~~--~g~~~~~---------------------------~-~-~~g~L~v~~~ 124 (360)
+..|.+|++|++| .||+++ .++.|.+++ ++.++.+ . . .++.|||++.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 5679999999865 589998 567788887 4443322 1 1 2578999987
Q ss_pred C-CcEEEEc-CCC-eEEEeec-----cC-----CccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 125 A-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 125 ~-~gl~~~~-~~g-~~~l~~~-----~~-----~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
. +.+++++ .++ ...+... .. ...+..|++|+++++|. |||+|.. +++|.
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~Ir 765 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSIR 765 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeEE
Confidence 6 4577777 566 5544311 01 12356799999999985 9999864 46788
Q ss_pred EEcCCCCeEEEEeC----------------------CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceee--
Q 018144 191 KYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET-- 246 (360)
Q Consensus 191 ~~d~~tg~~~~~~~----------------------~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~-- 246 (360)
++|++++....+.. .+..|.|++++++|+ +||+++.+++|.+|+.++......-.
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 88887665432210 144789999999997 99999999999999986543211100
Q ss_pred ---ecc-----CCCCCCceeEEcCCCCEEEEEec
Q 018144 247 ---FAE-----NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 247 ---~~~-----~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.+ ..-..|.++++|++|++||+...
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 000 01125999999999999999876
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=110.86 Aligned_cols=178 Identities=25% Similarity=0.314 Sum_probs=122.8
Q ss_pred cCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCCCCCccceecccccCCccEEE
Q 018144 115 IDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 115 ~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d-~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
.+|+||+.|.. +.|++++ .++ .+.+.. ..|++++++ ++|.+|+++.. ++.
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~~g~l~v~~~~-------------------~~~ 63 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRPDGRLYVADSG-------------------GIA 63 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECTTSEEEEEETT-------------------CEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEccCCEEEEEEcC-------------------ceE
Confidence 47899999976 5688999 455 443321 128899999 88999998643 456
Q ss_pred EEcCCCCeEEEEeC------CCcCcceEEEecCCCEEEEEeCCC--------CEEEEEEecCCcCcceeeeccCCCCCCc
Q 018144 191 KYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPD 256 (360)
Q Consensus 191 ~~d~~tg~~~~~~~------~l~~pngia~~~dg~~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~pd 256 (360)
.+|+++++++.+.. .+..||.++++++|+ +|++++.. ++|++++.++ +.+...+.+ ..|+
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~-~~pN 137 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADGL-GFPN 137 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEEE-SSEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEEecCc-cccc
Confidence 66988898876543 467899999999997 99998764 5699999763 233333332 3699
Q ss_pred eeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCc-E--EEEEeCCCCCc
Q 018144 257 NINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGT-I--IRNLVDPTGQL 330 (360)
Q Consensus 257 ~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~-~--~~~~~~~~g~~ 330 (360)
+|+++++|+ ||++... .+.|++++. ++. + .+.+.+..+.
T Consensus 138 Gi~~s~dg~~lyv~ds~----------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 182 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF----------------------------------NGRIWRFDLDADGGELSNRRVFIDFPGG- 182 (246)
T ss_dssp EEEEETTSSEEEEEETT----------------------------------TTEEEEEEEETTTCCEEEEEEEEE-SSS-
T ss_pred ceEECCcchheeecccc----------------------------------cceeEEEeccccccceeeeeeEEEcCCC-
Confidence 999999995 8888765 357888875 343 2 1233322221
Q ss_pred ccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 331 MSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 331 ~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
...+-++..+ +|+||++...++.|.+++-
T Consensus 183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 1346667776 5999999999999999864
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-10 Score=106.69 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=105.4
Q ss_pred CCCCcceEEEcCCCCEEEEec------------CC-eEEEEE----CCee---eEEE----------e-cCCeEEEEeCC
Q 018144 77 SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGTW---VNWK----------F-IDSHLIICDNA 125 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~------------~G-~I~~~~----~g~~---~~~~----------~-~~g~L~v~~~~ 125 (360)
.+..|+.|++|++|+||+++. .+ +|++++ +|+. +.+. . .+| |||++.
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~- 89 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP- 89 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC-
Confidence 478999999999999999962 23 899987 3432 3332 1 245 999874
Q ss_pred CcEEEEc-C--C----C-eEEEeeccCCc---cccccccEEEcCCCcEEEEeCCCCCC--CccceecccccCCccEEEEE
Q 018144 126 NGLHKVS-E--D----G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYL--PHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 126 ~gl~~~~-~--~----g-~~~l~~~~~~~---~~~~~n~l~~d~dG~l~vtd~~~~~~--~~~~~~~~~~~~~~g~l~~~ 192 (360)
..|+++. . + + .+.+.+..... ....++++++++||.|||++.+.... ......+.......|++++|
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4588773 2 2 2 34555544332 24568999999999999998752110 00000011112234789999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 234 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~ 234 (360)
+|++++++.+..++.+|+|++++++|+ +|+++.......++
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 999999999999999999999999997 78888765544444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-09 Score=96.00 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=139.2
Q ss_pred hhcccceEecCCCCCCcceEEEcCCCC-EEEEe-cCCeEEEEE---CCeeeEE------------E-ec-CCeEEEEeCC
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNW------------K-FI-DSHLIICDNA 125 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~---~g~~~~~------------~-~~-~g~L~v~~~~ 125 (360)
..|.....+..+ .+|..++++++|. ||+++ .++.|..++ +|+.+.. . .+ +..||++...
T Consensus 23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC
Confidence 344444555432 5789999999875 78887 577786555 4543211 1 11 3358887764
Q ss_pred C-cEEEEc--CCC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeE
Q 018144 126 N-GLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT 199 (360)
Q Consensus 126 ~-gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~ 199 (360)
. .+..++ .+| .........+ ...|..++++++| .+|+++.. .+.|..||.++ +.+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l 161 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL 161 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence 3 455555 345 3221111122 1357888999998 57787643 45677776643 333
Q ss_pred EE------EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeec---cC--CCCCCceeEEcCCCC-
Q 018144 200 TL------VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFA---EN--LPGAPDNINLAPDGT- 265 (360)
Q Consensus 200 ~~------~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~---~~--~~g~pd~i~~d~~G~- 265 (360)
.. .......|+++++++||+++|+++...+.|..|+++.. +......+. .. .+..+..+.++++|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 21 11223568999999999999999988899999998632 211111111 00 112344688999996
Q ss_pred EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-CCCCcccceeeEEE--ECC
Q 018144 266 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDN 342 (360)
Q Consensus 266 lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g 342 (360)
+|++..... .-.++.++.++........ +.|. .+..+.. ++.
T Consensus 242 lyv~~~~~~--------------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~ 286 (330)
T PRK11028 242 LYACDRTAS--------------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGK 286 (330)
T ss_pred EEEecCCCC--------------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCC
Confidence 888754311 1245666666643332221 1121 2233333 357
Q ss_pred EEEEEeCCCCeEEEEeC
Q 018144 343 HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 343 ~Lylgs~~~~~i~~~~l 359 (360)
+||+++-.++.|.++.+
T Consensus 287 ~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 287 YLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEEEEccCCcEEEEEE
Confidence 89999988899998875
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-09 Score=97.00 Aligned_cols=241 Identities=19% Similarity=0.255 Sum_probs=144.8
Q ss_pred hhcccceEecCCCCCCcceEEEcCC-CCEEEEec----CCeEEEEE---C-CeeeEEE-------------e--cCCeEE
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKN-GVIYTATR----DGWIKRLQ---D-GTWVNWK-------------F--IDSHLI 120 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~-G~l~v~~~----~G~I~~~~---~-g~~~~~~-------------~--~~g~L~ 120 (360)
..|.....+.. ...|..++++++ ..||+.+. .|.|..+. + |+.+.+. . .+..||
T Consensus 25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~ 102 (345)
T PF10282_consen 25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLY 102 (345)
T ss_dssp TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEE
T ss_pred CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEE
Confidence 44544444433 479999999875 46888875 46776555 4 6544321 1 245599
Q ss_pred EEeCCCcEE-EEc--CCC-eEEEeecc-------C--CccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCc
Q 018144 121 ICDNANGLH-KVS--EDG-VENFLSYV-------N--GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 121 v~~~~~gl~-~~~--~~g-~~~l~~~~-------~--~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
++.+..|-+ .++ .+| +....... . ......|..+.+++||+ +|++|-+ .
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~ 165 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------A 165 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------T
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------C
Confidence 998776533 333 557 43321110 0 11234678899999985 9998754 3
Q ss_pred cEEEEEcC--CCCeEEE----EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC--CcCcceeeecc---CCCC--
Q 018144 187 GQLLKYDP--SSNITTL----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAE---NLPG-- 253 (360)
Q Consensus 187 g~l~~~d~--~tg~~~~----~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g--~~~~~~~~~~~---~~~g-- 253 (360)
.+|+.|+. .+++++. .......|..+++++|++++|++....+.|..|+.+. ......+.... ...+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 45555554 4333533 2244568999999999999999999999999998872 22222222211 1111
Q ss_pred CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCC-CCCc
Q 018144 254 APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDP-TGQL 330 (360)
Q Consensus 254 ~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~-~g~~ 330 (360)
.|.+|++++||+ +||+..... .=.++.+|++ |++...-..+ .|.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~~G~- 292 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPTGGK- 292 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEESSS-
T ss_pred CceeEEEecCCCEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeCCCC-
Confidence 477899999996 888876511 1245666554 5543322222 232
Q ss_pred ccceeeEEE--ECCEEEEEeCCCCeEEEEeC
Q 018144 331 MSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 331 ~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l 359 (360)
.+..+.. ++..||+++..++.|.++++
T Consensus 293 --~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 293 --FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp --SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred --CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 4566666 45889999999999999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-08 Score=91.48 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=99.6
Q ss_pred ccccccEEEcCC------CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc--------------
Q 018144 148 LRFANDVVEASD------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-------------- 207 (360)
Q Consensus 148 ~~~~n~l~~d~d------G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~-------------- 207 (360)
..+.+++++|.. +.+||||++ .++|+.||..+++...+.....
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~ 122 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGE 122 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTE
T ss_pred ccccceEEEEccCCCCcceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCc
Confidence 357889999862 579999986 3478899988887766543211
Q ss_pred ------CcceEEEec---CCCEEEEEeCCCCEEEEEEec---CCcC-------cceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 208 ------FANGVALSR---DEDYVVVCESWKFRCRKYWLK---GERK-------GKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 208 ------~pngia~~~---dg~~l~v~~t~~~~i~~~~~~---g~~~-------~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
...|+++++ |++.||+.-..+.+++++..+ .+.. ...+.+.+ ..+..++++.|++|+||+
T Consensus 123 ~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~~G~ly~ 201 (287)
T PF03022_consen 123 SFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDPNGNLYF 201 (287)
T ss_dssp EEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEETTTEEEE
T ss_pred eEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECCCCcEEE
Confidence 135788866 888999999888899998753 1111 12233332 223568999999999999
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-----cEEEEEeCCCCCcccceeeEEEEC--
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD-- 341 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~-- 341 (360)
+... .+.|.+.++++ +....++++.. +.++.++..++
T Consensus 202 ~~~~----------------------------------~~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~ 245 (287)
T PF03022_consen 202 TDVE----------------------------------QNAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEG 245 (287)
T ss_dssp EECC----------------------------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--
T ss_pred ecCC----------------------------------CCeEEEEeCCCCcCccchheeEEcCce--eeccceeeecccc
Confidence 9987 46999999988 44445566653 46778887766
Q ss_pred -CEEEEEeCC
Q 018144 342 -NHLYVISLT 350 (360)
Q Consensus 342 -g~Lylgs~~ 350 (360)
|+||+.+..
T Consensus 246 ~g~L~v~snr 255 (287)
T PF03022_consen 246 DGYLWVLSNR 255 (287)
T ss_dssp TS-EEEEE-S
T ss_pred CceEEEEECc
Confidence 999998743
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=100.84 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=82.0
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEE-------------ecCCeEEEEeCCCcEEEEcCCC--eEEEeecc
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK-------------FIDSHLIICDNANGLHKVSEDG--VENFLSYV 143 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~-------------~~~g~L~v~~~~~gl~~~~~~g--~~~l~~~~ 143 (360)
-..+..|.+|.+|+|+.+| +++|+ .|+..... +..|+|||++ ++|++..++.| +.-..
T Consensus 167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~--- 241 (671)
T COG3292 167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG--- 241 (671)
T ss_pred ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC---
Confidence 3457889999999999887 88888 55433221 2368999987 67899888545 22221
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE----eCCCcCcceEEEecCCC
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDED 219 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~----~~~l~~pngia~~~dg~ 219 (360)
...+...+.-+..|.+|++||. +.+ ++.++......+... ..+....|++..+.||+
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiG------------------Ten-Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs 302 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIG------------------TEN-GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS 302 (671)
T ss_pred CCCcchheeeeecccCCCEEEe------------------ecc-cceeEecCCCCccccccccCCccccccceeeccCCC
Confidence 1122234566778999999994 333 355555443333221 12334558888999997
Q ss_pred EEEEEeCCCCEEEEEEe
Q 018144 220 YVVVCESWKFRCRKYWL 236 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~ 236 (360)
||+.... ++++|..
T Consensus 303 -LWv~t~~--giv~~~~ 316 (671)
T COG3292 303 -LWVGTYG--GIVRYLT 316 (671)
T ss_pred -EeeeccC--ceEEEec
Confidence 8777653 4666653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-07 Score=85.08 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=117.0
Q ss_pred cCCeEEEEeCC----CcEEEEc--CC-C-eEEEeecc-CCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccC
Q 018144 115 IDSHLIICDNA----NGLHKVS--ED-G-VENFLSYV-NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 115 ~~g~L~v~~~~----~gl~~~~--~~-g-~~~l~~~~-~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
.+..||+++.. .++..+. ++ | ++.+.... .+ ..|-.++++++|+ ||+++-.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~~~~g~~l~vany~---------------- 107 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAVDPDGRFLYVANYG---------------- 107 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEECTTSSEEEEEETT----------------
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEEecCCCEEEEEEcc----------------
Confidence 35679998863 3565555 44 7 66654322 23 3577899999995 8887532
Q ss_pred CccEE--EEEcCCCCeEEEEe--------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc--Ccceee
Q 018144 185 PHGQL--LKYDPSSNITTLVA--------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLET 246 (360)
Q Consensus 185 ~~g~l--~~~d~~tg~~~~~~--------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~--~~~~~~ 246 (360)
.|.+ +.++.+ |++.... .....|+.+.++|||+++|+++.+..+|+.|+.+... +.....
T Consensus 108 -~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 108 -GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp -TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred -CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 3444 444433 5543321 1245788999999999999999999999999997543 222222
Q ss_pred eccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcE--EEE
Q 018144 247 FAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTI--IRN 322 (360)
Q Consensus 247 ~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~--~~~ 322 (360)
+.-.....|..++++++|+ +||..... ..-.++.++ .+|+. +..
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--------------------------------~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELS--------------------------------NTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTT--------------------------------TEEEEEEEETTTTEEEEEEE
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCC--------------------------------CcEEEEeecccCCceeEEEE
Confidence 2112223589999999985 78876541 112445556 34532 222
Q ss_pred EeC-CCCCc-ccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 323 LVD-PTGQL-MSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 323 ~~~-~~g~~-~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
+.. +.+.. ....+.+... +..||+++-..+.|+++++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 322 12211 1256666666 4789999999999999987
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-07 Score=85.52 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=84.9
Q ss_pred CCeEEEEeCC-CcEEEEc--CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 116 DSHLIICDNA-NGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
+..||++... .++..++ .+| ++.......+ ..|..++++++|+ +|+++.. .+.|.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~ 105 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYN-----------------ANCVS 105 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcC-----------------CCeEE
Confidence 3458888754 5676565 456 5443221111 2478999999996 7776421 35666
Q ss_pred EEcCCC-CeE---EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcc--eeeeccCCCCCCceeEEcCC
Q 018144 191 KYDPSS-NIT---TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGK--LETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 191 ~~d~~t-g~~---~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~--~~~~~~~~~g~pd~i~~d~~ 263 (360)
.|+.++ +.. .....+...|++++++||++++|+++...+.|..|+++.. .... ...........|..++++++
T Consensus 106 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred EEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 665532 322 1112345678999999999999999999899999998642 1110 00111012235889999999
Q ss_pred CC-EEEEEec
Q 018144 264 GT-FWIAIIK 272 (360)
Q Consensus 264 G~-lwva~~~ 272 (360)
|+ +|+++..
T Consensus 186 g~~lyv~~~~ 195 (330)
T PRK11028 186 QQYAYCVNEL 195 (330)
T ss_pred CCEEEEEecC
Confidence 96 7787653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-06 Score=79.42 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=143.6
Q ss_pred CCCcceEEEcCCC-CEEEEec---CCeE--EEEE--CCeeeEEE--------------ecCC-eEEEEeCCCcEEEEc--
Q 018144 78 VNHPEDASMDKNG-VIYTATR---DGWI--KRLQ--DGTWVNWK--------------FIDS-HLIICDNANGLHKVS-- 132 (360)
Q Consensus 78 ~~~Pe~i~~d~~G-~l~v~~~---~G~I--~~~~--~g~~~~~~--------------~~~g-~L~v~~~~~gl~~~~-- 132 (360)
+..|.-+++++++ .||++.. .|+| |++| +|+.+.+. +.+| -++++.+..|.+.+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence 6789999999876 8999873 4666 4555 36654322 1234 477787776666554
Q ss_pred -CCC-eEEEee----ccCC--cc--ccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 133 -EDG-VENFLS----YVNG--SK--LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 133 -~~g-~~~l~~----~~~~--~~--~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
.+| +..... ...+ .+ ...+....++++| .|+++|-+ ..+++.|+.+.|+++.
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTP 181 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCcccc
Confidence 456 433221 1111 11 1235667789999 57776643 3577777777777755
Q ss_pred Ee----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec--cCCCC-C-----CceeEEcCCCC-EEE
Q 018144 202 VA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPG-A-----PDNINLAPDGT-FWI 268 (360)
Q Consensus 202 ~~----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~~~~g-~-----pd~i~~d~~G~-lwv 268 (360)
.. .....|.-|+|.|++++.|+..--++.|..+..++. .+.++.+- ..+|. + -..|.++++|+ ||+
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa 260 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA 260 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence 32 345678999999999999999888899988887753 23333221 01111 1 22377899997 555
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE--eCCCCCcccceeeEEEECCEEEE
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL--VDPTGQLMSFVTSGLQVDNHLYV 346 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~--~~~~g~~~~~~t~~~~~~g~Lyl 346 (360)
+.-+- +.=.+++++++|..++.+ ....|. .+.--.+...++.|++
T Consensus 261 sNRg~--------------------------------dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Lia 307 (346)
T COG2706 261 SNRGH--------------------------------DSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIA 307 (346)
T ss_pred ecCCC--------------------------------CeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEE
Confidence 44331 123678899987655544 223332 2222223344678999
Q ss_pred EeCCCCeEEEEeCC
Q 018144 347 ISLTSNFIGKVQLS 360 (360)
Q Consensus 347 gs~~~~~i~~~~l~ 360 (360)
++-.++.|.++..+
T Consensus 308 a~q~sd~i~vf~~d 321 (346)
T COG2706 308 ANQKSDNITVFERD 321 (346)
T ss_pred EccCCCcEEEEEEc
Confidence 99999999988754
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-08 Score=93.23 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=109.4
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCc-cEEEEEcCCC--C---eEEEEeCCCcCcceEEEecCCCEE
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSS--N---ITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~t--g---~~~~~~~~l~~pngia~~~dg~~l 221 (360)
+..|.+|++|++|+|||++... |.. ........ ++|++++..+ | +.+.+.+++..|+|+++.++| |
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~-y~~-----~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGIT-YSR-----PAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCc-CCC-----CCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E
Confidence 4679999999999999998641 111 00011122 3888887532 3 346677889999999999887 9
Q ss_pred EEEeCCCCEEEEEE-ecCC-cC-cceeeeccCCC-------CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 222 VVCESWKFRCRKYW-LKGE-RK-GKLETFAENLP-------GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 222 ~v~~t~~~~i~~~~-~~g~-~~-~~~~~~~~~~~-------g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
||++. .+|++|. .++. +. +..+++.+..+ ..+.++++++||+||++.....+... ..|.
T Consensus 85 yV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~----~~~~----- 153 (367)
T TIGR02604 85 YVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV----TRPG----- 153 (367)
T ss_pred EEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee----ccCC-----
Confidence 99875 4698884 4332 12 24444433321 23778999999999998764211000 0000
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeE
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFI 354 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i 354 (360)
.+. .......+.+++++++|..++.+.. | +..+.++..+ +|+||++.......
T Consensus 154 --~~~----~~~~~~~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~ 207 (367)
T TIGR02604 154 --TSD----ESRQGLGGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPL 207 (367)
T ss_pred --Ccc----CcccccCceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCce
Confidence 000 0001224789999999988887764 3 2345556665 58999887654433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.3e-07 Score=80.26 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=118.5
Q ss_pred hhcccceEecCCCCCCcceEEEcCCC-CEEEEe-cCCeEEEEE---CCeeeEE----E--------------------ec
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNW----K--------------------FI 115 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G-~l~v~~-~~G~I~~~~---~g~~~~~----~--------------------~~ 115 (360)
++|+........ ...|..+++|++| .++++. ..|.|.++. +|..... . .+
T Consensus 76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 455444443322 3677999999998 567777 566665544 5532211 0 12
Q ss_pred CC-eEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 116 DS-HLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 116 ~g-~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
++ .|+++|-+ ..++.|+ .+| ++.... ..-.+-..|..|++.++|. .|+.. |....=-++
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v~ 218 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDVL 218 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEEE
Confidence 33 58888866 4677777 677 544321 1112335799999999995 67643 112222467
Q ss_pred EEcCCCCeEEEEeC------CC---cCcceEEEecCCCEEEEEeCCCCEEEEEEec--CCcCcceeeeccCCCC-CCcee
Q 018144 191 KYDPSSNITTLVAD------GF---YFANGVALSRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFAENLPG-APDNI 258 (360)
Q Consensus 191 ~~d~~tg~~~~~~~------~l---~~pngia~~~dg~~l~v~~t~~~~i~~~~~~--g~~~~~~~~~~~~~~g-~pd~i 258 (360)
.||+..|+++.+.. ++ .....|.+++||++||+++.+.+.|..|.++ +.++...+.. ...| .|..+
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F 296 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDF 296 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccc
Confidence 78887788776532 22 2344688999999999999998888877765 3333222222 1233 49999
Q ss_pred EEcCCCCEEEEEec
Q 018144 259 NLAPDGTFWIAIIK 272 (360)
Q Consensus 259 ~~d~~G~lwva~~~ 272 (360)
.+++.|++.++...
T Consensus 297 ~i~~~g~~Liaa~q 310 (346)
T COG2706 297 NINPSGRFLIAANQ 310 (346)
T ss_pred eeCCCCCEEEEEcc
Confidence 99999998877665
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-06 Score=76.91 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=129.0
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCeeeE-E---------E-ec-CCeEEEEeCC-CcEEEEc-CCC--eEE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN-W---------K-FI-DSHLIICDNA-NGLHKVS-EDG--VEN 138 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~~~-~---------~-~~-~g~L~v~~~~-~gl~~~~-~~g--~~~ 138 (360)
.+|.+++++++|. +|++. .++.|..++ +++... + . .+ ++.+|++... +.+..++ .++ +..
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 4578899998886 56655 678888888 443321 1 1 12 2346666543 3455566 443 222
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
+.. + ..+.+++++++|.++++... ....+..+|..+++..........|+.+++++|+
T Consensus 111 ~~~---~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 111 IPV---G---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred eeC---C---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 211 1 23678999999987765321 1124556787766654322223467889999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcC-cceeeeccC---CCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 219 DYVVVCESWKFRCRKYWLKGERK-GKLETFAEN---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~---~~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
+.++++....+.|..|+.+..+. .....-... ....|.+++++++|+. |++...
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--------------------- 227 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--------------------- 227 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC---------------------
Confidence 98888766667899999864321 111100000 1113667889999974 676543
Q ss_pred CCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 294 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.+..+|. ++++...+.. +. .+.++... +..||+++-..+.|.+++++
T Consensus 228 -------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 -------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred -------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 135666775 4565544432 11 23444443 46788777667788887753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=82.56 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=136.3
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEecC-CeEEEEECCe-e----e----E--------------------------EEe
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT-W----V----N--------------------------WKF 114 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~~-G~I~~~~~g~-~----~----~--------------------------~~~ 114 (360)
+.+..+ +..|..++..++|.+.+.... |.+..+.+|. . + . +..
T Consensus 60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~ 138 (399)
T COG2133 60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISE 138 (399)
T ss_pred cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEe
Confidence 344455 899999999999955555544 7665554221 0 0 0 111
Q ss_pred cCCeEEEEeCCCcEEEEc-CCC----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceec-----ccccC
Q 018144 115 IDSHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD-----ILEGK 184 (360)
Q Consensus 115 ~~g~L~v~~~~~gl~~~~-~~g----~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~-----~~~~~ 184 (360)
.++.+|+++. ..+.+++ .+. .+.+....++....+-..|++++||+||++-.+........... +++-.
T Consensus 139 ~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~ 217 (399)
T COG2133 139 PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRID 217 (399)
T ss_pred ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeec
Confidence 2333454442 2344555 211 23333444443356777899999999999976641111000000 01111
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEE------EEEEecCCcCcceeee-c---------
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC------RKYWLKGERKGKLETF-A--------- 248 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i------~~~~~~g~~~~~~~~~-~--------- 248 (360)
...++..|+.+...+++..++.+|.|++++|....||+++.+...+ .++. .|...+..-.+ .
T Consensus 218 -~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~-~G~nYGWP~~~~G~~~~g~~~~ 295 (399)
T COG2133 218 -RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIR-PGKNYGWPYAYFGQNYDGRAIP 295 (399)
T ss_pred -cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccc-cCCccCCceeccCcccCccccC
Confidence 1234455555555566778899999999999855699999876333 2211 11111100000 0
Q ss_pred c--C-----CC-------CCCceeEEcC-C------CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 249 E--N-----LP-------GAPDNINLAP-D------GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 249 ~--~-----~~-------g~pd~i~~d~-~------G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
+ . .| -.|.||++-. + |.++|+... .
T Consensus 296 ~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg----------------------------------s 341 (399)
T COG2133 296 DGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG----------------------------------S 341 (399)
T ss_pred CCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec----------------------------------c
Confidence 0 0 00 1256666642 2 567777766 2
Q ss_pred eEEEEECCCCc---EEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCC-eEEEEeC
Q 018144 308 AHLIHVAEDGT---IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN-FIGKVQL 359 (360)
Q Consensus 308 ~~v~~~~~~g~---~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~-~i~~~~l 359 (360)
-.+.+.+++|+ ..+.+-..+.. ..+-.+... ||.||+.+..++ .|.|+..
T Consensus 342 w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV~v~~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 342 WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDVAVAPDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred eeEEEeccCCCcceEEEEEEecCCC--CcccceEECCCCeEEEeecCCCCeEEEecC
Confidence 35778888877 33333221211 346666665 799999999855 9999865
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=86.69 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=108.3
Q ss_pred ceEecCCCCCCcceEEEcCCC-CEEEEecCCeEEEEE--CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEeeccCCc
Q 018144 70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGS 146 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G-~l~v~~~~G~I~~~~--~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~~~~ 146 (360)
...++...+.+||.+.+|+.| --|++-.+|+|.++. ...+..+.... .+....+. ...+ .+. ...
T Consensus 45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~----~s~~~~~~---~~~~--~~~---~e~ 112 (376)
T KOG1520|consen 45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTK----DSTNRSQC---CDPG--SFE---TEP 112 (376)
T ss_pred cccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecc----cccccccc---CCCc--cee---ccc
Confidence 355666668999999999744 578888899988886 22233332211 00000000 0000 000 111
Q ss_pred cccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----CCcCcceEEEecCCCE
Q 018144 147 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDY 220 (360)
Q Consensus 147 ~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----~l~~pngia~~~dg~~ 220 (360)
.-..|-+|+++..| ++||+|+. -+|+.++++++..+.+.+ .+.+.|++.++++| .
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~ 173 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-V 173 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-e
Confidence 12468899999888 99999975 369999999777655443 25688999999966 5
Q ss_pred EEEEeCCC-----------------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~-----------------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|++|++. +|+++||+.. ...+++.+++. +|+|+++.+|+.+.+-+..
T Consensus 174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAET 238 (376)
T ss_pred EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEee
Confidence 99998763 4777787633 34456665554 6999999999986665443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-07 Score=85.38 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=94.8
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEEE-CCee-eEE-----------------Eec-----CCeEEEEeCC--------
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNW-----------------KFI-----DSHLIICDNA-------- 125 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~-~~~-----------------~~~-----~g~L~v~~~~-------- 125 (360)
|..|.+|++.++|.+|++...|+|++++ +|.. ..+ +.. ++.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4689999999999999999999999999 7754 211 111 3678887652
Q ss_pred -CcEEEEc--CC-C----eEEEeeccCC--ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 126 -NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 126 -~gl~~~~--~~-g----~~~l~~~~~~--~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
..|.++. .. . .+.+...... ........|++++||.||++-..... .....+ .....|.|+|++++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~d 156 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEETT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEeccc
Confidence 2466665 22 1 2233222221 22345567999999999999765322 111111 12235889999986
Q ss_pred CC-------------eEEEEeCCCcCcceEEEecCCCEEEEEeCCC---CEEEEEE
Q 018144 196 SN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWK---FRCRKYW 235 (360)
Q Consensus 196 tg-------------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~---~~i~~~~ 235 (360)
.. ..+.+..++..|.++++++....||+++.+. ..|.++.
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec
Confidence 32 2355677899999999999933599998764 3566554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-06 Score=80.94 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCcceEEEcCCC-CEEEEec-CCeEEEEE--CCeeeEE-------------EecCCeEEEEeCC-CcEEEEc-CCCeEEE
Q 018144 79 NHPEDASMDKNG-VIYTATR-DGWIKRLQ--DGTWVNW-------------KFIDSHLIICDNA-NGLHKVS-EDGVENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~-~G~I~~~~--~g~~~~~-------------~~~~g~L~v~~~~-~gl~~~~-~~g~~~l 139 (360)
..|..++++++| .+|+... ...+..++ ...++.+ ...+.++|+.+.. +.+..++ ... +.+
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence 489999999887 8888873 33455554 2222211 1123458887755 4566666 322 111
Q ss_pred eeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
....-+ ..|.+++++++| .+|++|... .++.+..+|..++++.........|.+++++++|
T Consensus 110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g 171 (381)
T COG3391 110 GSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG 171 (381)
T ss_pred eEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence 111112 268999999998 899998741 2468999999888776654334468999999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcc-eeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~-~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+.+|+++...++|..++.++..... ...........|.++.++++|+ +|++...
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 9999999889999999976543321 0000011233699999999997 9998876
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-07 Score=92.64 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=142.4
Q ss_pred CCCCcceEEEcCCCCEEEEecCCeEEEEE-CCeeeEEE----------------ecCCeEEEEeCC-CcEEEEc---C--
Q 018144 77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWK----------------FIDSHLIICDNA-NGLHKVS---E-- 133 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~~~~----------------~~~g~L~v~~~~-~gl~~~~---~-- 133 (360)
.+..|-.++..+||.||+|+.+ -|-|+. +|++..+. ..+|.|||++.. +.++++. +
T Consensus 363 ~L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eeeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccc
Confidence 3678999999999999999965 377777 77654331 237999999976 5788876 1
Q ss_pred -CC-eEEEeec----------------cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 134 -DG-VENFLSY----------------VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 134 -~g-~~~l~~~----------------~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.+ .++++-. .....+.+|.+|++|.+|.+||+|+. +|-++|.+
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~ 502 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT 502 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence 12 5555411 01234679999999999999999864 34444432
Q ss_pred CCeEEEEe--------------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc---Ccce--------
Q 018144 196 SNITTLVA--------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER---KGKL-------- 244 (360)
Q Consensus 196 tg~~~~~~--------------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~---~~~~-------- 244 (360)
|.+..+. -.+..|..++++|=.+.|||.++. -|++++.+..- .+..
T Consensus 503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--vvlrit~~~rV~Ii~GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--VVLRITVVHRVRIILGRPTHCDLANA 579 (1899)
T ss_pred -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc--eEEEEccCccEEEEcCCccccccCCC
Confidence 3332221 124578899999955569999974 57777754320 0100
Q ss_pred eeeccC-----CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 018144 245 ETFAEN-----LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI 319 (360)
Q Consensus 245 ~~~~~~-----~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~ 319 (360)
..+... ..-.+..|++..+|-|||+....|. -+.|-++..||++
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rr-------------------------------iNrvr~~~tdg~i 628 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRR-------------------------------INRVRKLSTDGTI 628 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchh-------------------------------hhheEEeccCceE
Confidence 000000 0014678999999999999877421 1345555556633
Q ss_pred EEEEe------------------CCC----CCcccceeeEEEE-CCEEEEEeCCCCeEEEE
Q 018144 320 IRNLV------------------DPT----GQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 357 (360)
Q Consensus 320 ~~~~~------------------~~~----g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~ 357 (360)
. .+. ..+ ...++.+++++.. +|++|++...+-+|..+
T Consensus 629 ~-ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 629 S-ILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred E-EecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 2 121 000 0124556666666 69999999988877543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=87.16 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=106.4
Q ss_pred cEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEE
Q 018144 153 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 231 (360)
Q Consensus 153 ~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i 231 (360)
+-..+++. .||++|-. .++|+++|+.+|+.+.+.....++++..++.++. |++++.+ +
T Consensus 29 gP~w~~~~~~L~w~DI~-----------------~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~g---~ 87 (307)
T COG3386 29 GPVWDPDRGALLWVDIL-----------------GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEHG---V 87 (307)
T ss_pred CccCcCCCCEEEEEeCC-----------------CCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEccc---c
Confidence 33444544 58887743 6799999999898888877777789999998874 8888875 4
Q ss_pred EEEEecCCcCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 232 RKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 232 ~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
.+++.+... ..+.+.+. ....|+...+|++|++|+++... . + .......+.
T Consensus 88 ~~~~~~~~~--~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~-------------------~~~~~~~~~ 142 (307)
T COG3386 88 RLLDPDTGG--KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D-------------------LGKSEERPT 142 (307)
T ss_pred EEEeccCCc--eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c-------------------cCccccCCc
Confidence 455543211 11333322 22368889999999999998772 0 0 000013345
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEE--ECCEEEEEeCCCCeEEEEeCC
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l~ 360 (360)
+.|++++++|.+++.+.+. +....++.. ++..||+..-..++|.+++++
T Consensus 143 G~lyr~~p~g~~~~l~~~~----~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDD----LTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCc----EEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 7899999998887766541 112233444 346899999999999999874
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-06 Score=88.66 Aligned_cols=186 Identities=16% Similarity=0.231 Sum_probs=119.3
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE--CC-----eeeEEE--------------------------------ecC
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ--DG-----TWVNWK--------------------------------FID 116 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~--~g-----~~~~~~--------------------------------~~~ 116 (360)
...---||+++ +|.||+++ ..-+|+|+. .+ .++.++ +..
T Consensus 406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~ 485 (1899)
T KOG4659|consen 406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKM 485 (1899)
T ss_pred ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccC
Confidence 34555689998 99999999 456899986 22 222221 113
Q ss_pred CeEEEEeCCCcEEEEcCCC-eEEEeec---------------cCCccccccccEEEcC-CCcEEEEeCCCCCCCccceec
Q 018144 117 SHLIICDNANGLHKVSEDG-VENFLSY---------------VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD 179 (360)
Q Consensus 117 g~L~v~~~~~gl~~~~~~g-~~~l~~~---------------~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~ 179 (360)
|.||.+| +..|-++|.+| +..+... .....+.+|.+++++| |+.+||-|.
T Consensus 486 g~lYfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~------------ 552 (1899)
T KOG4659|consen 486 GNLYFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT------------ 552 (1899)
T ss_pred CcEEEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec------------
Confidence 5699988 44577888888 6665311 1123567999999998 778999764
Q ss_pred ccccCCccEEEEEcCCCCeEEEEeC---------------------CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 180 ILEGKPHGQLLKYDPSSNITTLVAD---------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 180 ~~~~~~~g~l~~~d~~tg~~~~~~~---------------------~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+-|+++++. +++..+.. .+-.+..|+++++|. |||+|+.+.+|.|+..-+
T Consensus 553 -------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 553 -------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS 623 (1899)
T ss_pred -------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence 345666654 44433211 123467899999995 999999987777654311
Q ss_pred CcCcceeeecc-------------------------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 239 ERKGKLETFAE-------------------------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 239 ~~~~~~~~~~~-------------------------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
..++..+++. ..-..|..+++.+||.++||..+. -.+|++.++
T Consensus 624 -tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~Vs~~ 691 (1899)
T KOG4659|consen 624 -TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKVSAR 691 (1899)
T ss_pred -cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhhhhc
Confidence 0011111110 011247789999999999998763 346788777
Q ss_pred CCcc
Q 018144 294 YPKL 297 (360)
Q Consensus 294 ~~~~ 297 (360)
.|..
T Consensus 692 ~~~~ 695 (1899)
T KOG4659|consen 692 MAKY 695 (1899)
T ss_pred cccc
Confidence 6653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-05 Score=69.97 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=74.7
Q ss_pred CeEEEEeCC-CcEEEEc-CCC-eE-EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 117 SHLIICDNA-NGLHKVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~-~~g-~~-~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
..+|++... +.+..++ .++ .. .+.. + ..+..++++++|+ +|++.. ..+.|..
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~ 99 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPS---G---PDPELFALHPNGKILYIANE-----------------DDNLVTV 99 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccC---C---CCccEEEECCCCCEEEEEcC-----------------CCCeEEE
Confidence 347776544 4466667 555 32 2211 1 1245778899886 666532 2467888
Q ss_pred EcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 018144 192 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 270 (360)
+|..+++..........++++++++||+.++++......+..++.+..+. ..... ....|..+.++++|. +|++.
T Consensus 100 ~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 100 IDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence 99876654333332345789999999997777765544566666543211 11111 223467788999997 44554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=69.25 Aligned_cols=82 Identities=33% Similarity=0.521 Sum_probs=62.2
Q ss_pred ccEEEcCCCcEEEEeCCCCCCCccce--ecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 152 NDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 152 n~l~~d~dG~l~vtd~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
|||+.-....+|+|+.+.. .+.+. .+.+.+.+.+.|+.||+ ++.+...+++.+||||++++|++.|||++...+
T Consensus 1 NDIvavG~~sFy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEECcCcEEEECchhh--CcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 4666656678999987632 11221 22333456788999998 467788899999999999999999999999999
Q ss_pred EEEEEEec
Q 018144 230 RCRKYWLK 237 (360)
Q Consensus 230 ~i~~~~~~ 237 (360)
.|..|..+
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99998753
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=87.53 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-C-cCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l-~~pngia~~~dg~~l~v~~t~ 227 (360)
.+..+++|.+|++|+. ++. ++++||+.+++.-.+... + ...|.+..+-+|+ |||....
T Consensus 166 ~V~aLv~D~~g~lWvg------------------T~d-GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdq 225 (671)
T COG3292 166 PVVALVFDANGRLWVG------------------TPD-GLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQ 225 (671)
T ss_pred cceeeeeeccCcEEEe------------------cCC-cceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEecc
Confidence 5667889999999994 333 699999988776554332 2 2345666777776 7777653
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCce----eEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~----i~~d~~G~lwva~~~ 272 (360)
++++++..|.... . ..+.+|++ +..|.+|++|+++..
T Consensus 226 --Gv~~~e~~G~~~s---n---~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 226 --GVYLQEAEGWRAS---N---WGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred --ceEEEchhhcccc---c---cCCCCcchheeeeecccCCCEEEeecc
Confidence 4888887653221 1 22335655 335999999999986
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-05 Score=75.08 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE-C-CeeeE------------EEecCCeEEEEeCC---CcEEEEc-CCC-eE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ-D-GTWVN------------WKFIDSHLIICDNA---NGLHKVS-EDG-VE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~-~-g~~~~------------~~~~~g~L~v~~~~---~gl~~~~-~~g-~~ 137 (360)
..|.++++.+.|. +|+.+ .++.|..++ . .+... +...++.+||++.. +-+..++ .++ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 7899999998776 99988 568888887 2 21111 11235689999984 3466677 444 22
Q ss_pred EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-----EeCCCcCcce
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANG 211 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-----~~~~l~~png 211 (360)
.. ...+ ..|.+++++++|+ +|++|.. .+.|..+|.++..+.. .......|.+
T Consensus 154 ~~--~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~ 211 (381)
T COG3391 154 AT--IPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG 211 (381)
T ss_pred EE--EecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCce
Confidence 21 1122 1468999999997 9999743 5689999987655543 1234568999
Q ss_pred EEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 212 VALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+++++||+.+|+++... +.+.+++...........-. ... .|.++.++++|. +|++...
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecC
Confidence 99999999999999987 58999987543222211111 122 588999999996 5555433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-05 Score=69.23 Aligned_cols=180 Identities=12% Similarity=0.157 Sum_probs=95.9
Q ss_pred CCCCCcceEEEcCC-CCEEEEe-cCCeEEEEE-CCeee------------EEEec-CCeEEEEeC-CCcEEEEc--C-CC
Q 018144 76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV------------NWKFI-DSHLIICDN-ANGLHKVS--E-DG 135 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~-G~l~v~~-~~G~I~~~~-~g~~~------------~~~~~-~g~L~v~~~-~~gl~~~~--~-~g 135 (360)
+....+.+|+++++ +.||+.. ..+.|+.++ +|++. .++.. ++.+.+.+. .+.++.++ . +.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 44556999999984 7799776 778899999 77542 22222 345555553 34566666 2 22
Q ss_pred -e-----EEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcC--CCCeEEEEe---
Q 018144 136 -V-----ENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--- 203 (360)
Q Consensus 136 -~-----~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~tg~~~~~~--- 203 (360)
. +.+.............+|+.|+.+ ++|++- |.. -.+|+.++. .........
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---------------E~~-P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---------------ERK-PKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---------------ESS-SEEEEEEESTT-SS--EEEE-HH
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---------------CCC-ChhhEEEccccCccceeeccccc
Confidence 2 112212222223457899999875 688752 122 246777764 222222211
Q ss_pred -----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCC------CCCceeEEcCCCCEEEEEec
Q 018144 204 -----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 204 -----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~------g~pd~i~~d~~G~lwva~~~ 272 (360)
.....+.+++++|..+.||+-+....+|..++.+|.......... ... .-|.||++|++|+|||..-.
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~-g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR-GFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-TGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-cccCcccccCCccEEEECCCCCEEEEcCC
Confidence 123468899999988889999988899999998775333222221 111 13889999999999998754
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00089 Score=63.74 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred EEcCCCCEEEEecCCeEEEEE--CCeeeE-----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcccc
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVN-----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 149 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~--~g~~~~-----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~ 149 (360)
+++ ++.+|+++.+|.|+.+| +|+..- ....++.+|+++....++.+| .+| ...- ....+....
T Consensus 62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~~~ 139 (377)
T TIGR03300 62 AVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR-AKLSSEVLS 139 (377)
T ss_pred EEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee-eccCceeec
Confidence 444 67999999999999999 675320 112367899988777899999 678 4322 122221111
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC------cceEEEecCCCEEEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYVVV 223 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~------pngia~~~dg~~l~v 223 (360)
.| .+ .++.+|+.. ..|.|+.+|+++|+.......... .....+. ++ .+|+
T Consensus 140 ~p---~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~ 195 (377)
T TIGR03300 140 PP---LV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLV 195 (377)
T ss_pred CC---EE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEE
Confidence 11 22 356788742 357899999988876543221110 0111222 33 4665
Q ss_pred EeCCCCEEEEEEecC
Q 018144 224 CESWKFRCRKYWLKG 238 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g 238 (360)
.. ..++++.+++..
T Consensus 196 ~~-~~g~v~ald~~t 209 (377)
T TIGR03300 196 GF-AGGKLVALDLQT 209 (377)
T ss_pred EC-CCCEEEEEEccC
Confidence 54 356899998753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00054 Score=64.07 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=69.7
Q ss_pred EEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeec---cC--CCC-CCce---eEEcCCC-CEEEEEecCchhHHHHh
Q 018144 213 ALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA---EN--LPG-APDN---INLAPDG-TFWIAIIKLDARRMKIL 281 (360)
Q Consensus 213 a~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~---~~--~~g-~pd~---i~~d~~G-~lwva~~~~~~~~~~~~ 281 (360)
.+.+ ||+.+|++.. +.|+.+++.+........+. .. ..+ .|.+ ++++++| ++||++.+.. ++-
T Consensus 200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~----~~t 273 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA----KWT 273 (352)
T ss_pred ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc----ccc
Confidence 3455 8887877766 78999997654333322221 11 011 3555 9999877 6999765421 000
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEE--ECC-EEEEEeCCCCeEEEE
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ--VDN-HLYVISLTSNFIGKV 357 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~--~~g-~Lylgs~~~~~i~~~ 357 (360)
+ ..+.+.|..+|. .++++..+.... .+.++.. ++. .||+.+-.++.|.++
T Consensus 274 h---------------------k~~~~~V~ViD~~t~kvi~~i~vG~-----~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 274 H---------------------KTASRFLFVVDAKTGKRLRKIELGH-----EIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred c---------------------cCCCCEEEEEECCCCeEEEEEeCCC-----ceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 0 112357899996 577777776532 2434444 346 788888888889988
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
+.
T Consensus 328 D~ 329 (352)
T TIGR02658 328 DA 329 (352)
T ss_pred EC
Confidence 75
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-05 Score=73.70 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=100.5
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEec-CCeEEEEE-C-CeeeE------E------------E--------ecCCeEEE
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ-D-GTWVN------W------------K--------FIDSHLII 121 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~-g~~~~------~------------~--------~~~g~L~v 121 (360)
+.+..+ |..|++|++.++|.+|++.. .|+|++++ + +..+. + + ..++.||+
T Consensus 23 ~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 23 KVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 455555 89999999999999999997 69999998 3 32111 0 0 01235788
Q ss_pred EeC----------CCcEEEEc-C-C-C----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCC--CCCcccee---c
Q 018144 122 CDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK--YLPHEYCL---D 179 (360)
Q Consensus 122 ~~~----------~~gl~~~~-~-~-g----~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~--~~~~~~~~---~ 179 (360)
+-. ...|.++. . . . .+.+....+....+.-..|++++||.|||+..... ........ .
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhc
Confidence 641 23466665 2 1 1 23333322222234456789999999999875431 10000000 0
Q ss_pred -------c---cccCCccEEEEEcCCCCe------------EEEEeCCCcCcceEEEecCCCEEEEEeCCC---CEEEEE
Q 018144 180 -------I---LEGKPHGQLLKYDPSSNI------------TTLVADGFYFANGVALSRDEDYVVVCESWK---FRCRKY 234 (360)
Q Consensus 180 -------~---~~~~~~g~l~~~d~~tg~------------~~~~~~~l~~pngia~~~dg~~l~v~~t~~---~~i~~~ 234 (360)
. -.....|.|+|+|++ |+ .+.+..++..|.|++++++|+ ||++|.+. ..|.++
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~D-GsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN~I 259 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLD-GSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELNII 259 (454)
T ss_pred cccccccccccCcccCceEEEEEcCC-CCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEEEe
Confidence 0 011245889999987 43 356777899999999999875 99999765 456665
Q ss_pred E
Q 018144 235 W 235 (360)
Q Consensus 235 ~ 235 (360)
.
T Consensus 260 ~ 260 (454)
T TIGR03606 260 V 260 (454)
T ss_pred c
Confidence 4
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-05 Score=66.21 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCeEEEEeC--C--------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 186 HGQLLKYDPSSNITTLVAD--G--------------FYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~--~--------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
...|+++||.||++....+ + ...-||||++++++.+||+.-.=.+++.+.+
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 4589999999999876432 0 1246999999999999999765456766654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00029 Score=63.61 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=110.3
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEE---E----CCeee---------------------EEEecCCeEEEEeCC-CcE
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTWV---------------------NWKFIDSHLIICDNA-NGL 128 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~---~----~g~~~---------------------~~~~~~g~L~v~~~~-~gl 128 (360)
+..|.+++..+ +.||+++.. .|+++ + .++.. .+...++.+|+.+.. .-+
T Consensus 48 F~r~MGl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~~~~~l~fVNT~fSCL 125 (335)
T TIGR03032 48 FPRPMGLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLALGAGRLLFVNTLFSCL 125 (335)
T ss_pred cCccceeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheeecCCcEEEEECcceeE
Confidence 67888998874 579998854 47777 2 11100 111223445544433 344
Q ss_pred EEEcCCC-eEE-----EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 129 HKVSEDG-VEN-----FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 129 ~~~~~~g-~~~-----l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
..++++- +.. +.+......--..|+++.....--|+|--+..-....|. +.+..|+++ +|-.+++ .+
T Consensus 126 atl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv~s~e--vl 198 (335)
T TIGR03032 126 ATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDIPSGE--VV 198 (335)
T ss_pred EEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEeCCCC--EE
Confidence 4555333 222 112111111135789999765468887543222223333 233455655 6666564 46
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCc
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD 274 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~ 274 (360)
.+++.+|.+-.+. ||+ ||+++++.+++.++|.+. +..+... ..||+|.|+.+. |+ ++|++..+|
T Consensus 199 ~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 199 ASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred EcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 7899999999987 454 999999999999999752 4555665 578999999998 64 678888876
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00022 Score=68.40 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=107.6
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E------E---EecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccc--ccc
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N------W---KFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL--RFA 151 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~------~---~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~--~~~ 151 (360)
++.+|+++.+|.++.+| +|+.. . . ...++.+|+++....++.+| ++| ...-.. .....+ ...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCC
Confidence 67899999889999999 67421 0 0 12367889887666799999 788 332211 111100 000
Q ss_pred ccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcce---------EEEec--CCCE
Q 018144 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY 220 (360)
Q Consensus 152 n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~png---------ia~~~--dg~~ 220 (360)
..-+++ +|.+|+.. ..|.++.+|.++|+...... ...|.+ +..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~~------------------~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVGG------------------DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEEc------------------CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence 111232 45677742 35788999988887543211 111110 10111 2346
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
+|++.. .+.++.++.+..+ ..+..... .+..+.. .+|++|++...
T Consensus 259 vy~~~~-~g~l~ald~~tG~----~~W~~~~~-~~~~~~~-~~~~vy~~~~~---------------------------- 303 (394)
T PRK11138 259 VYALAY-NGNLVALDLRSGQ----IVWKREYG-SVNDFAV-DGGRIYLVDQN---------------------------- 303 (394)
T ss_pred EEEEEc-CCeEEEEECCCCC----EEEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence 888775 4689999975432 12321111 1223333 35689998765
Q ss_pred cccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 301 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
+.++.+|. +|+++.......+. ..++.+..+|+||+++..+
T Consensus 304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G 345 (394)
T PRK11138 304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG 345 (394)
T ss_pred -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC
Confidence 67888886 57765544332222 2233344577788776544
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=70.29 Aligned_cols=109 Identities=21% Similarity=0.314 Sum_probs=71.4
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-------C-CCcCcceEEEecCC-
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-------D-GFYFANGVALSRDE- 218 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-------~-~l~~pngia~~~dg- 218 (360)
+..|.+|++.+||++|||.. ..|+|+++++.++..+.+. . +.....||+++||=
T Consensus 29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 45799999999999999742 2488999987655433221 1 23456799999762
Q ss_pred -----CEEEEEeCC---------CCEEEEEEecCC--cCcceeeeccCCCCC----CceeEEcCCCCEEEEEecC
Q 018144 219 -----DYVVVCESW---------KFRCRKYWLKGE--RKGKLETFAENLPGA----PDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 219 -----~~l~v~~t~---------~~~i~~~~~~g~--~~~~~~~~~~~~~g~----pd~i~~d~~G~lwva~~~~ 273 (360)
..+|++-+. ..+|.|+.++.. .....+.+....|.. -..|++++||.|||++...
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 468888522 468999987532 233233333333321 2358899999999998764
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0039 Score=55.82 Aligned_cols=222 Identities=13% Similarity=0.173 Sum_probs=134.1
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE-------------EEecCCeEEEEeC--CCcEEEEc-C-CC-e
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN-------------WKFIDSHLIICDN--ANGLHKVS-E-DG-V 136 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~-------------~~~~~g~L~v~~~--~~gl~~~~-~-~g-~ 136 (360)
-..+.+|.++.+|...+++ .+..|.-++ +|+... |......+.-++. +.-|..++ . +. +
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 3578899999999887775 677787787 664332 2222333333332 12344444 2 33 4
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
+.+ .|.. ..++.|.+.|.+..+++-+ .+..|..+|..+.+...+. .+..+.-+|+||
T Consensus 94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp 150 (311)
T KOG1446|consen 94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDP 150 (311)
T ss_pred EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECC
Confidence 433 2322 3588999999889999633 3456777776544443332 244566788999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC--CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG--APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g--~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
+|- ++.+...+..|..||+.--..+-++.|.-+.+. --.+|.+.++|. |.+++..
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------------------- 208 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------------------- 208 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------------
Confidence 984 666666666888899753223444444322111 134688899996 6666654
Q ss_pred CCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 294 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
+.++.+|. +|.+...+...... ....-++.+. +++..+++....+|.++.+
T Consensus 209 --------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 --------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred --------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 57788884 89988888654332 1122444453 6777777777778877765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00062 Score=65.34 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=112.3
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE-----------------ecCCeEEEEeCCCcEEEEc-CCC-eEEEee--ccCC
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK-----------------FIDSHLIICDNANGLHKVS-EDG-VENFLS--YVNG 145 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~-----------------~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~--~~~~ 145 (360)
++.+|+++.+|.|+.+| +|+.. |. ..++.+|++.....++.++ .+| ...-.. ...+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 56777877788888888 66432 11 1245678877666788888 677 322111 0000
Q ss_pred -cc---cccc-ccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 146 -SK---LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 146 -~~---~~~~-n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. +... ..-.+ .+|.+|+++ ..|.++.+|..+|+..... .+..+..++. +++.
T Consensus 239 ~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~-~~~~~~~~~~--~~~~ 296 (394)
T PRK11138 239 ATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKR-EYGSVNDFAV--DGGR 296 (394)
T ss_pred ccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEee-cCCCccCcEE--ECCE
Confidence 00 0000 11122 257888853 2478999999988764322 2333333443 3446
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccC-CC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
+|+... .++|+.++.+..+ ..+... .. .......+ .+|.+|++...
T Consensus 297 vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~-------------------------- 344 (394)
T PRK11138 297 IYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE-------------------------- 344 (394)
T ss_pred EEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECCEEEEEeCC--------------------------
Confidence 888875 5689999985432 122111 11 11111222 36789998765
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
+.|+.+|+ +|+++..+....+. ..+..+..+++||+++..+.
T Consensus 345 ---------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G~ 387 (394)
T PRK11138 345 ---------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDGT 387 (394)
T ss_pred ---------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCce
Confidence 67888986 79988877653221 23344456889999987664
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=72.28 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=94.7
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-EEEe-------CCCcCcceEEEecC---
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVA-------DGFYFANGVALSRD--- 217 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-~~~~-------~~l~~pngia~~~d--- 217 (360)
+.|..|++.+||++||++ ..|+|++++.+ +.. ..+. .+.....|++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 457899999999999974 35899999844 554 2221 12345679999994
Q ss_pred CCEEEEEeCCC--------CEEEEEEecCC--cCcceeeeccCCCC------CCceeEEcCCCCEEEEEecCchhHHHHh
Q 018144 218 EDYVVVCESWK--------FRCRKYWLKGE--RKGKLETFAENLPG------APDNINLAPDGTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 218 g~~l~v~~t~~--------~~i~~~~~~g~--~~~~~~~~~~~~~g------~pd~i~~d~~G~lwva~~~~~~~~~~~~ 281 (360)
+..+|++.+.. .+|.|+..+.. .....+.+....+. ....|.+++||.|||+.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 44799988743 47889887654 22333333222221 12348899999999998764330 00
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-------------EEEeCCCCCcccceeeEEEE-C-CEEEE
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-------------RNLVDPTGQLMSFVTSGLQV-D-NHLYV 346 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-------------~~~~~~~g~~~~~~t~~~~~-~-g~Lyl 346 (360)
.+. .....+.|+|++++|++- +.|.. | +..+..+.++ . |+||.
T Consensus 140 ~~~------------------~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 140 AQD------------------PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp GCS------------------TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred ccc------------------cccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence 000 122357899999998731 11211 2 2334566666 4 89999
Q ss_pred EeCCCC
Q 018144 347 ISLTSN 352 (360)
Q Consensus 347 gs~~~~ 352 (360)
+....+
T Consensus 198 ~d~G~~ 203 (331)
T PF07995_consen 198 ADNGPD 203 (331)
T ss_dssp EEE-SS
T ss_pred EccCCC
Confidence 986543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=68.07 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=85.4
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC---------CCCE
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES---------WKFR 230 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t---------~~~~ 230 (360)
.++|++|.... +. .++|+.+|.+++++.-.......|+++ +++||+.+|++++ ....
T Consensus 13 ~~v~V~d~~~~------------~~-~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGHF------------AA-TTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCccc------------cc-CceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence 47999886511 11 278999999988876655566789997 9999999999999 7788
Q ss_pred EEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 231 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
|..||....+... ++-.... ...|..+++++||+ +||+...+
T Consensus 79 V~v~D~~t~~~~~-~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p------------------------------- 126 (352)
T TIGR02658 79 VEVIDPQTHLPIA-DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP------------------------------- 126 (352)
T ss_pred EEEEECccCcEEe-EEccCCCchhhccCccceEEECCCCCEEEEecCCC-------------------------------
Confidence 9999975432111 1110001 11466899999995 99988653
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCCC
Q 018144 305 GGGAHLIHVAE-DGTIIRNLVDPTGQ 329 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~~~~~~~~~~g~ 329 (360)
.+.|..+|. .++++..+..|++.
T Consensus 127 --~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 127 --SPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred --CCEEEEEECCCCcEEEEEeCCCCc
Confidence 357788884 67777777776653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00059 Score=62.40 Aligned_cols=173 Identities=16% Similarity=0.243 Sum_probs=99.7
Q ss_pred ceEEEcCCCCEEEEecC-----C--------eEEEEE--CCee-eEEE----------------ec-------CCeEEEE
Q 018144 82 EDASMDKNGVIYTATRD-----G--------WIKRLQ--DGTW-VNWK----------------FI-------DSHLIIC 122 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~-----G--------~I~~~~--~g~~-~~~~----------------~~-------~g~L~v~ 122 (360)
-++.+|+.|.||+-+.+ + +|+.+| ++++ +.+. .. ++.+||+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 46889999999998732 1 788888 5543 2211 11 1569999
Q ss_pred eCC-CcEEEEc-CCC-eEE-Eeecc-----------CCcccc---ccccEEEcC---CC-cEEEEeCCCCCCCccceecc
Q 018144 123 DNA-NGLHKVS-EDG-VEN-FLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLDI 180 (360)
Q Consensus 123 ~~~-~gl~~~~-~~g-~~~-l~~~~-----------~~~~~~---~~n~l~~d~---dG-~l~vtd~~~~~~~~~~~~~~ 180 (360)
|.. .||+.+| .+| ... +.... .+..+. .+.+++..+ +| .||+.--
T Consensus 84 D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------------- 150 (287)
T PF03022_consen 84 DSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------------- 150 (287)
T ss_dssp ETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-------------
T ss_pred CCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC-------------
Confidence 987 6999999 777 433 32111 111121 133445433 43 4666421
Q ss_pred cccCCccEEEEEcCC---CC----------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc-Ccceee
Q 018144 181 LEGKPHGQLLKYDPS---SN----------ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLET 246 (360)
Q Consensus 181 ~~~~~~g~l~~~d~~---tg----------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~-~~~~~~ 246 (360)
....+|++..+ +. +++.+..-.....|++++++|. ||+++...+.|.+++.+++. ..+.++
T Consensus 151 ----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~ 225 (287)
T PF03022_consen 151 ----SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEI 225 (287)
T ss_dssp ----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEE
T ss_pred ----CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchhe
Confidence 12246665421 00 1122221124567999999885 99999999999999987642 224445
Q ss_pred eccCC--CCCCceeEEcC--CCCEEEEEec
Q 018144 247 FAENL--PGAPDNINLAP--DGTFWIAIIK 272 (360)
Q Consensus 247 ~~~~~--~g~pd~i~~d~--~G~lwva~~~ 272 (360)
+.... --.||++.+++ +|.||+.+..
T Consensus 226 l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 226 LAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eEEcCceeeccceeeeccccCceEEEEECc
Confidence 54322 23799999999 9999998865
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00082 Score=64.01 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=72.8
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCC-CCceeEEcC
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPG-APDNINLAP 262 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g-~pd~i~~d~ 262 (360)
..|.++.+|.++|+...... .......++ +++.+|++.. .+.|+.++.+..+. .+.. ...+ ......+ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~-~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDA-DGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECC-CCeEEEEECCCCcE----EEccccccCCccccCEE-E
Confidence 35789999998887654332 222333333 3446888864 57899999753321 1111 1111 1111222 2
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD 341 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~ 341 (360)
++.+|++... +.|+.+|+ +|+++..+....+. ..++.+..+
T Consensus 320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~ 361 (377)
T TIGR03300 320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG 361 (377)
T ss_pred CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence 4678888755 68899997 59998887754421 233345667
Q ss_pred CEEEEEeCCCCeE
Q 018144 342 NHLYVISLTSNFI 354 (360)
Q Consensus 342 g~Lylgs~~~~~i 354 (360)
++||+++..+.-.
T Consensus 362 ~~l~v~~~dG~l~ 374 (377)
T TIGR03300 362 DGLLVQTRDGDLY 374 (377)
T ss_pred CEEEEEeCCceEE
Confidence 8899999876543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.8e-05 Score=74.10 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred eEecCCCCCCcceEEEcC-CCCEEEEec-CCeEEEEE-CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEe-eccCCc
Q 018144 71 IKVGEGSVNHPEDASMDK-NGVIYTATR-DGWIKRLQ-DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFL-SYVNGS 146 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~-~G~l~v~~~-~G~I~~~~-~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~-~~~~~~ 146 (360)
++|....|..||+||+|- .-++|.++. ..+|-.-. +|+.+ ++|. +.
T Consensus 1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~r--------------------------kvLf~td---- 1109 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSER--------------------------KVLFYTD---- 1109 (1289)
T ss_pred ceeecccCCCccceeeeeccceeeeeccccchhheeecCCcee--------------------------eEEEeec----
Confidence 455556688999999984 456776663 22222111 22211 1111 11
Q ss_pred cccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE--EEeCCCcCcceEEEecCCCEEEE
Q 018144 147 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 147 ~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~--~~~~~l~~pngia~~~dg~~l~v 223 (360)
+-.|.+|++|+ .|+||.||.... +-.|-+.+.+ |+-. .+.+++..|||+.+++..+.|-|
T Consensus 1110 -LVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mD-G~NrRilin~DigLPNGLtfdpfs~~LCW 1172 (1289)
T KOG1214|consen 1110 -LVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMD-GENRRILINTDIGLPNGLTFDPFSKLLCW 1172 (1289)
T ss_pred -ccCcceEEeecccCceeecccccc---------------CCcceeeccC-CccceEEeecccCCCCCceeCcccceeeE
Confidence 12477888987 569999986532 1123333333 2222 23467889999999999999999
Q ss_pred EeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 224 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+++|+..+.++|. +...++. ++. +|-+|.-+.+. +|-..+.
T Consensus 1173 vDAGt~rleC~~p~g~--gRR~i~~-~Lq-YPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1173 VDAGTKRLECTLPDGT--GRRVIQN-NLQ-YPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred EecCCcceeEecCCCC--cchhhhh-ccc-Cceeeeecccc-ceeeccc
Confidence 9999999999988763 3343432 333 68888888775 8888886
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=58.19 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=97.6
Q ss_pred CCeEEEEeC-CCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDN-ANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~-~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.++||...- ...++.++.+| ++.+. ..+ +.-+.+|+.-.+|.+.+++-. .++|+.+
T Consensus 33 ~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er-----------------~~~L~~~ 91 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER-----------------DQRLYIF 91 (248)
T ss_dssp TTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-----------------TTEEEEE
T ss_pred CCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-----------------CCcEEEE
Confidence 577885443 35677788666 44432 222 345788998888888886532 3455554
Q ss_pred cC--CCCeE-----EEEeCCC-----cCcceEEEecCCCEEEEEeCCC-CEEEEEEe--cCCcCcce--eeec-c-CCCC
Q 018144 193 DP--SSNIT-----TLVADGF-----YFANGVALSRDEDYVVVCESWK-FRCRKYWL--KGERKGKL--ETFA-E-NLPG 253 (360)
Q Consensus 193 d~--~tg~~-----~~~~~~l-----~~pngia~~~dg~~l~v~~t~~-~~i~~~~~--~g~~~~~~--~~~~-~-~~~g 253 (360)
+. .+... +.+.-++ ..--|+|+++.++.||++.-.. .+|+.++. .+...... ..+. . ..-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 43 32222 1122122 1235999999887788775433 35666654 11111000 0000 0 0112
Q ss_pred CCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCC----
Q 018144 254 APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG---- 328 (360)
Q Consensus 254 ~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g---- 328 (360)
-|.++.+|+ .|++||-... ...|+.+|.+|+++..+.-..|
T Consensus 172 d~S~l~~~p~t~~lliLS~e----------------------------------s~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDE----------------------------------SRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp ---EEEEETTTTEEEEEETT----------------------------------TTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred cccceEEcCCCCeEEEEECC----------------------------------CCeEEEECCCCCEEEEEEeCCcccCc
Confidence 378899986 5689987665 3489999999999988876654
Q ss_pred -CcccceeeEEEEC-CEEEEEeCCCCeEEEE
Q 018144 329 -QLMSFVTSGLQVD-NHLYVISLTSNFIGKV 357 (360)
Q Consensus 329 -~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~ 357 (360)
..+..+-+++.+. |+|||.|= .|..-++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred ccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 2356788898885 99999984 6666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0027 Score=56.00 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=93.1
Q ss_pred EEcCCCCEEEEecCCeEEEEE--CCeeeE-E----------EecCCeEEEEeCCCcEEEEc-CCC-eEEE-ee-ccCCcc
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVN-W----------KFIDSHLIICDNANGLHKVS-EDG-VENF-LS-YVNGSK 147 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~--~g~~~~-~----------~~~~g~L~v~~~~~gl~~~~-~~g-~~~l-~~-~~~~~~ 147 (360)
....++.+|+++.++.|+.++ +|+..- + ...++.+|++...+.++.++ .+| ...- .. ..+...
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 454588999999999999999 775321 1 12367899988767899999 888 4332 12 111111
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc------------ceEEEe
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA------------NGVALS 215 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p------------ngia~~ 215 (360)
........++ ++.+|+.. ..+.|+.+|+++|+....... ..+ ++-.+.
T Consensus 112 ~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 112 VRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp TB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEEC
T ss_pred cccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEE
Confidence 2223334444 45678753 247899999999987543222 221 133333
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.++ .+|++...+ ++..++....+ ..+... ...+.......++.+|++..
T Consensus 172 ~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 172 SDG-RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp CTT-EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred ECC-EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence 345 688887654 46667765432 123212 22233334456678999883
|
... |
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00038 Score=69.38 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=106.7
Q ss_pred ccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 148 LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 148 ~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
+..|.+|++|--+ ++|.||+-. ..=.+..+|.+ .+...+.++|..|.+|++++-+..|||+++
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred CCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccc
Confidence 5689999999766 799998751 01135666633 111224578999999999998878999998
Q ss_pred CC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC--EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 227 WK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 227 ~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
.+ -+|-+.+++|+ +.+++....-++|+|+.+|+.-. -||-...
T Consensus 1131 nRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------ 1177 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------ 1177 (1289)
T ss_pred cccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecCC------------------------------
Confidence 65 36777888773 45677766678999999998775 5764332
Q ss_pred cCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 303 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 303 ~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.++-.+.++|.--+.+.. + +..+-++..+++++|...+..|+|.-+.+
T Consensus 1178 -----~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1178 -----KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -----cceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 356677777654333321 2 23445567777789999999999877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0067 Score=53.49 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=119.9
Q ss_pred eEEEcCCC-CEEEEecCCeEEEEE-CC--eeeEE----------Ee-cCCeEEEEeC-CCcEEEEc-CCC--eEEEeecc
Q 018144 83 DASMDKNG-VIYTATRDGWIKRLQ-DG--TWVNW----------KF-IDSHLIICDN-ANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 83 ~i~~d~~G-~l~v~~~~G~I~~~~-~g--~~~~~----------~~-~~g~L~v~~~-~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.+.+.+++ .+++++.+|.|..++ .. ....+ .. .++.++++.. .+.+..++ .++ ...+. ..
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 134 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GH 134 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cC
Confidence 66777776 677777888888887 32 11111 11 2345555554 44566666 444 22221 11
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVV 222 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~ 222 (360)
...+..+.+++++.+.++-. ..+.|..+|..+++....... ......++++++++.++
T Consensus 135 ----~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 135 ----TDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred ----CCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEE
Confidence 12467888888887666422 246788888765554332222 23567899999998777
Q ss_pred EEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 223 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
++.. .+.|..|+....+ ....+. ........+.+++++.+.++...
T Consensus 194 ~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------ 239 (289)
T cd00200 194 SSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGSE------------------------------ 239 (289)
T ss_pred EecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEcC------------------------------
Confidence 7765 6778888875321 111121 12234567888888877777652
Q ss_pred cCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEEC--CEEEEEeCCCCeEEE
Q 018144 303 TLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD--NHLYVISLTSNFIGK 356 (360)
Q Consensus 303 ~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~--g~Lylgs~~~~~i~~ 356 (360)
.+.+..++.+ ++....+.... ..+..+.... ..|+.++. ...|..
T Consensus 240 ----~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-d~~i~i 287 (289)
T cd00200 240 ----DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSA-DGTIRI 287 (289)
T ss_pred ----CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecC-CCeEEe
Confidence 2466667753 66666665322 2466666654 44555443 444544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0054 Score=60.94 Aligned_cols=171 Identities=16% Similarity=0.274 Sum_probs=101.6
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCe-eeEE----------Ee-cCCeEEEEeCCCc-EEEEc-CCC--eEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNW----------KF-IDSHLIICDNANG-LHKVS-EDG--VEN 138 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~-~~~~----------~~-~~g~L~v~~~~~g-l~~~~-~~g--~~~ 138 (360)
...-.++++.+||.+.++. .||+|-.++ .|. +..| .+ ..|+..++..-.| +-.+| ... +++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 3445577888899776554 899998888 441 1111 11 1344444443444 44455 333 666
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRD 217 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~d 217 (360)
+..+.+ .....+++|+.|.|.++-+.. .=.|+.++.+||++.-+..+...| .+++++++
T Consensus 430 ft~P~p----~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 430 FTSPEP----IQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ecCCCc----eeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 533221 235688999999988863321 125888999999887666665555 68999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
++ ++++.+....|.++++=.. .++.+.+. ...-.-++.+.++| .+-|++..
T Consensus 490 ~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 490 GS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence 98 5566666677777765322 22333332 11123355666666 46676655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00037 Score=66.13 Aligned_cols=150 Identities=18% Similarity=0.136 Sum_probs=88.6
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
..+.+.+||+ +|+++ ..|.|..+|..++++.........|.|+++++||+++|++....+.
T Consensus 40 ~~~~~s~Dgr~~yv~~------------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN------------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp EEEE-TT-SSEEEEEE------------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred eEEEecCCCCEEEEEc------------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCc
Confidence 4567789995 88863 2478999999988876555555679999999999999999988889
Q ss_pred EEEEEecCCcCcceeeecc-CC-----CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 231 CRKYWLKGERKGKLETFAE-NL-----PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~-~~-----~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
+..+|.+.- .....+.. .. ...+.+|...+....||.....
T Consensus 102 v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------------------------- 148 (369)
T PF02239_consen 102 VSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------------------------- 148 (369)
T ss_dssp EEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------------------------------
T ss_pred eeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------------------------------
Confidence 999986432 22222211 01 1122355556666767755431
Q ss_pred CCceEEEEECC-CCc--EEEEEeCCCCCcccceeeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 018144 305 GGGAHLIHVAE-DGT--IIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~--~~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. +.+ ....+.. |. ....+..+ + .+++++....|.|+++++
T Consensus 149 --~~~I~vVdy~d~~~~~~~~i~~--g~---~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 149 --TGEIWVVDYSDPKNLKVTTIKV--GR---FPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp --TTEEEEEETTTSSCEEEEEEE----T---TEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred --CCeEEEEEeccccccceeeecc--cc---cccccccCcccceeeecccccceeEEEee
Confidence 346777763 222 2223332 22 33444444 3 568888888999988875
|
... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.008 Score=53.00 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=92.7
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCee-e----------EEEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-V----------NWKF-IDS-HLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-~----------~~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
.-.++.+.+++. |++++.+|.|..++ +++. . .+.. .++ .|+++...+.+..++ .++ ...+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 345667777654 45555788887776 3321 1 1111 223 455555455566666 443 33332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~ 219 (360)
.. . ..+..+.+.+++.+.++.. ..+.+..+|..+++...... .......+++++++.
T Consensus 91 ~~-~----~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 91 GH-T----SYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cc-C----CcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 11 1 2466778888887777532 25678889887665544333 223467899999887
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.++.+. ..+.|..|++...+. ...+. ........+.++++|+ ++++..
T Consensus 149 ~l~~~~-~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 149 FVASSS-QDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEEc-CCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecC
Confidence 554443 356788888753221 11221 2222456788888884 555543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0041 Score=59.07 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCeEEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
+..+||++.+..+..+| .++ +..+.. | ..+.++++++||+ +|+++. ..+.+..
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v 104 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKV---G---GNPRGIAVSPDGKYVYVANY-----------------EPGTVSV 104 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEEEEEEE--TTTEEEEEEE-----------------ETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEec---C---CCcceEEEcCCCCEEEEEec-----------------CCCceeE
Confidence 34599998777788888 555 444422 2 3478999999995 777642 2467888
Q ss_pred EcCCCCeEEEEeCCC--------cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 192 YDPSSNITTLVADGF--------YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l--------~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
+|.+|.+........ ....+|..++.+..++++-...++|+.++....+.-....+ ....+|.+..+|++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPD 182 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TT
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--cccccccccccCcc
Confidence 998877654432111 12357777888877777777778999998764321111111 12346889999999
Q ss_pred CCEEEE-Eec
Q 018144 264 GTFWIA-IIK 272 (360)
Q Consensus 264 G~lwva-~~~ 272 (360)
|+++++ ...
T Consensus 183 gry~~va~~~ 192 (369)
T PF02239_consen 183 GRYFLVAANG 192 (369)
T ss_dssp SSEEEEEEGG
T ss_pred cceeeecccc
Confidence 986554 443
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0095 Score=52.44 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=99.1
Q ss_pred cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 115 IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 115 ~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.++++|+++....++.++ .+| ...-... ++. +..+ . .-.++.+|+.. ..++|+.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~--~-~~~~~~v~v~~------------------~~~~l~~~ 91 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA--P-VVDGGRVYVGT------------------SDGSLYAL 91 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG--E-EEETTEEEEEE------------------TTSEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce--e-eeccccccccc------------------ceeeeEec
Confidence 688999998888999999 688 3332222 221 1111 2 33567888853 24589999
Q ss_pred cCCCCeEEEEe-C-C---CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC-C--------Ccee
Q 018144 193 DPSSNITTLVA-D-G---FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-A--------PDNI 258 (360)
Q Consensus 193 d~~tg~~~~~~-~-~---l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g-~--------pd~i 258 (360)
|..+|+..... . . ...........+++.+|+... .+.|+.++++..+.-...... ..++ . ....
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSP 169 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEE
T ss_pred ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccce
Confidence 98888876542 1 1 111112222223666887776 568999997633221111111 1010 0 0112
Q ss_pred EEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeE
Q 018144 259 NLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSG 337 (360)
Q Consensus 259 ~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~ 337 (360)
.++ +|.+|++... +.++.+|. .|+.+. ..+.+. .....
T Consensus 170 ~~~-~~~v~~~~~~-----------------------------------g~~~~~d~~tg~~~w--~~~~~~---~~~~~ 208 (238)
T PF13360_consen 170 VIS-DGRVYVSSGD-----------------------------------GRVVAVDLATGEKLW--SKPISG---IYSLP 208 (238)
T ss_dssp ECC-TTEEEEECCT-----------------------------------SSEEEEETTTTEEEE--EECSS----ECECE
T ss_pred EEE-CCEEEEEcCC-----------------------------------CeEEEEECCCCCEEE--EecCCC---ccCCc
Confidence 223 4588887765 33666674 566443 222211 12224
Q ss_pred EEECCEEEEEeCCCCeEEEEeCC
Q 018144 338 LQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 338 ~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
...++.||+++ ....|..+++.
T Consensus 209 ~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 209 SVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp ECCCTEEEEEE-TTTEEEEEETT
T ss_pred eeeCCEEEEEe-CCCEEEEEECC
Confidence 56679999999 78888888753
|
... |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=55.97 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=102.5
Q ss_pred ceEEEcCCC-CEEEEecCCeEEEEE--CCe------------eeEEEecC-CeEEEEeCCCcEEEEc-C-CCeEEE-eec
Q 018144 82 EDASMDKNG-VIYTATRDGWIKRLQ--DGT------------WVNWKFID-SHLIICDNANGLHKVS-E-DGVENF-LSY 142 (360)
Q Consensus 82 e~i~~d~~G-~l~v~~~~G~I~~~~--~g~------------~~~~~~~~-g~L~v~~~~~gl~~~~-~-~g~~~l-~~~ 142 (360)
.++++.++| +||.++.+|.|..++ .|. +..+...+ +.|+.+.++.-+.+++ . ++++.- .-.
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 345555544 688999999999988 331 22233334 7788888887777776 3 332211 111
Q ss_pred cCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEE
Q 018144 143 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l 221 (360)
.. ..|-++++.++|. +.++. ...|..+...++ +... .-...+.++|+++|++.+
T Consensus 404 lg----~QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 404 LG----SQPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVSPDGSEV 458 (603)
T ss_pred cC----CCceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ceee-ccccccceEEEcCCCCEE
Confidence 11 3577999998874 44432 234555543322 2222 233568899999999877
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-|... .++|..|.++|....+..... ...+-+..++..+||.+.++...
T Consensus 459 aVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 459 AVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 66665 457999999886443322222 35567889999999988887665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0068 Score=54.21 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=99.1
Q ss_pred CCCcceEEEcCC-CCEEEEe-cCCeEEEEE-CCeee------------EEEecCCeEEEE-eCC-CcEEEEc--CCC-eE
Q 018144 78 VNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV------------NWKFIDSHLIIC-DNA-NGLHKVS--EDG-VE 137 (360)
Q Consensus 78 ~~~Pe~i~~d~~-G~l~v~~-~~G~I~~~~-~g~~~------------~~~~~~g~L~v~-~~~-~gl~~~~--~~g-~~ 137 (360)
...-.++.++++ ..||..+ ..-.|..++ +|++- .++..++..|+. +.. +.++.+. .+. +.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345667788874 4566555 344677777 66532 222234444543 322 3455554 332 22
Q ss_pred EEee-----ccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-------
Q 018144 138 NFLS-----YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------- 204 (360)
Q Consensus 138 ~l~~-----~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~------- 204 (360)
.... ...........+++.|+.+ ++||+- |..+ -+|+.++........-..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------------Er~P-~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------------ERNP-IGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEE---------------ccCC-cEEEEEecCCcccccccccCccccc
Confidence 2111 1111223456799999865 788852 2223 367777643222211100
Q ss_pred C--CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC------CCceeEEcCCCCEEEEEec
Q 018144 205 G--FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG------APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 ~--l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g------~pd~i~~d~~G~lwva~~~ 272 (360)
+ +....|+.+++..+.|+|-+.-...|..++.+|...+.... .....| -+.||+.|.+|+|||....
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 0 22356888888766788877777889999988764322221 111112 3789999999999998765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.012 Score=57.38 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=102.6
Q ss_pred EEEcCCCC-EEE-EecCC--eEEEEE--CCeeeEE------------EecCCeEEEEeCCC---cEEEEc-CCC-eEEEe
Q 018144 84 ASMDKNGV-IYT-ATRDG--WIKRLQ--DGTWVNW------------KFIDSHLIICDNAN---GLHKVS-EDG-VENFL 140 (360)
Q Consensus 84 i~~d~~G~-l~v-~~~~G--~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~---gl~~~~-~~g-~~~l~ 140 (360)
..+.+||. |++ ...+| .|+.++ +|+.+.+ ...+..|+++.... .|+.++ .++ .+.+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence 35667774 433 33333 588887 4443222 11233465543222 377777 555 55443
Q ss_pred eccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
... ......++++||. |+++-.. .....|+++|.++++.+.+........+.+++|||+
T Consensus 303 ~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 303 RHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred cCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCC
Confidence 211 1234567888885 5554211 112469999998888766543323334578999999
Q ss_pred EEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 220 YVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 220 ~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
.++++.... ..|+++++++.. .+.+... .......++++|. |+.+....
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~----------------------- 414 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ----------------------- 414 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC-----------------------
Confidence 888876533 367888876542 2222211 1112235778886 44433321
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCC
Q 018144 297 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 328 (360)
....++.++.+|+....+..+.|
T Consensus 415 ---------g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 415 ---------GKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred ---------CceEEEEEECCCCceEECcCCCC
Confidence 12357778888887776655444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0079 Score=53.56 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=102.2
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~~~dg~~l~v~~t 226 (360)
.+..++.+..+|.+|-+... | ...+|.++|++||++... ...-.|..|+++..| .+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 35678888888999998654 1 234799999999987542 344568899999855 5999988
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 306 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 306 (360)
..+..++||.+. ......+. .++-.=|++.|.+ .||+++..
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg~-~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDGK-RLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECSS-CEEEE-SS----------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCCC-EEEEECCc----------------------------------
Confidence 889999999753 22333332 2232346776643 79998875
Q ss_pred ceEEEEECCC-CcEEEEEeCC-CCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 307 GAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 307 ~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
..+..+||+ -+....+... +|.+......+...+|.||.--+..++|.+++.
T Consensus 149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 588899985 4555554432 456666777777789999999999999999974
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.02 Score=55.74 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=102.0
Q ss_pred EEcCCCC-EEEEe-cC--CeEEEEE--CCeeeEEE-----------ecCC-eEEEEeCCC---cEEEEc-CCC-eEEEee
Q 018144 85 SMDKNGV-IYTAT-RD--GWIKRLQ--DGTWVNWK-----------FIDS-HLIICDNAN---GLHKVS-EDG-VENFLS 141 (360)
Q Consensus 85 ~~d~~G~-l~v~~-~~--G~I~~~~--~g~~~~~~-----------~~~g-~L~v~~~~~---gl~~~~-~~g-~~~l~~ 141 (360)
++.++|. |++.+ .+ ..|++++ +|+.+.+. .++| .|++..... .|+.++ .++ .+.+..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 4556664 44444 22 3588877 44432221 1233 454432222 477777 555 554422
Q ss_pred ccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
. .+ .....++++||+ |+++... .....|+.+|.++++.+.+..........+++|||+.
T Consensus 290 ~-~~----~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 290 H-FG----IDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred C-CC----CccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 1 11 123567888885 5554211 0123589999877777655433233446899999998
Q ss_pred EEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 221 VVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 221 l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
++++...+ ..|+.+++++.. ...+... .......+.+||+. +.+...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~------------------------- 399 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATRE------------------------- 399 (433)
T ss_pred EEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEec-------------------------
Confidence 88775432 368888876532 2233211 12234578889973 333322
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEeCCCC
Q 018144 298 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 328 (360)
.....|+.++.+|...+.+..+.|
T Consensus 400 -------~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 400 -------GGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred -------CCceEEEEEECCCCceEEcccCCC
Confidence 113578888988877766654444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.029 Score=54.86 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.|+.++ .+| .+.+.. ..+ ......+++||+ |+++-.. .....|+.+|.++++.+.+.
T Consensus 243 ~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~---------------~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 243 EIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK---------------DGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred EEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC---------------CCCeEEEEEECCCCCeEECc
Confidence 477777 556 544432 122 123567889996 7664211 11236999999888877665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.........++++||+.++++... ...|+++++++.+. +.+... ........+++||+.
T Consensus 303 ~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 303 RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSITPDGRS 363 (448)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeECCCCCE
Confidence 444445667899999988776542 34688888765332 222111 112233567888863
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.055 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=68.0
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ......+.+||+ |.++-+. .....|+.+|.++++.+.+.
T Consensus 227 ~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 227 RVYLLDLETGQRELVGN-FPG----MTFAPRFSPDGRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred EEEEEECCCCcEEEeec-CCC----cccCcEECCCCCEEEEEEec---------------CCCceEEEEECCCCceEEcc
Confidence 577777 566 544432 222 233567889995 5554211 11346999999888877665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.........+++|||+.++++... ...|++++.++.... .+.. ..+......+.++|+.
T Consensus 287 ~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~---~lt~-~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR---RISF-GGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE---Eeec-CCCcccCeEECCCCCE
Confidence 443345568899999977766532 347888888764322 2211 1222234567777753
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.051 Score=50.94 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=41.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCC-cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l-~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
.|.|++=+......+.+..+. ...+++++.+++. +++... .+.+++-.-++.+ +.+...........++.+.++|
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~-~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSS-RGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeC-CceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCC
Confidence 356776554323444433322 2346788888875 333332 3456654222211 1222211111235567777888
Q ss_pred CEEEEEec
Q 018144 265 TFWIAIIK 272 (360)
Q Consensus 265 ~lwva~~~ 272 (360)
++|+....
T Consensus 227 ~~~~vg~~ 234 (334)
T PRK13684 227 NLWMLARG 234 (334)
T ss_pred CEEEEecC
Confidence 88886544
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=65.68 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=49.1
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCc--c-----ceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEec
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPH--E-----YCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSR 216 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~--~-----~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~ 216 (360)
..+..|+.|++|++|+|||.......... . ..+.+....... +...++.+++++.+... -....|++++|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 45778999999999999998754321110 0 000000001111 55567777888776543 34567999999
Q ss_pred CCCEEEEEe
Q 018144 217 DEDYVVVCE 225 (360)
Q Consensus 217 dg~~l~v~~ 225 (360)
|++.||+.-
T Consensus 512 Dg~tlFvni 520 (524)
T PF05787_consen 512 DGRTLFVNI 520 (524)
T ss_pred CCCEEEEEE
Confidence 999998863
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.044 Score=53.14 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=85.7
Q ss_pred eEEEcCCCC-E-EEEecC--CeEEEEE--CCeeeEE------------EecCCeEEEEeCCC---cEEEEc-CCC-eEEE
Q 018144 83 DASMDKNGV-I-YTATRD--GWIKRLQ--DGTWVNW------------KFIDSHLIICDNAN---GLHKVS-EDG-VENF 139 (360)
Q Consensus 83 ~i~~d~~G~-l-~v~~~~--G~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~---gl~~~~-~~g-~~~l 139 (360)
+..+.+||. | |+...+ ..|+.++ +|+.+.+ ...+..|++..... .|+.++ .++ .+.+
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 346666764 4 444333 3578777 4533222 11233454433222 477777 555 5544
Q ss_pred eeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
... .+ ......+++||. |+++... .....|+.+|..+++.+.+..........+++|||
T Consensus 283 t~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 283 TNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADG 342 (430)
T ss_pred ccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 321 11 123456778884 6664211 11236999998878776654332233456799999
Q ss_pred CEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 219 DYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 219 ~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
+.++++.... ..|+.+++++.. .+.+... .......++++|...+
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLI 389 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEE
Confidence 9888876533 357888876532 2333221 1223446788886433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.08 Score=51.42 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=68.8
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ....+.+++||+ |+++... .....|+.+|.++++.+.+.
T Consensus 224 ~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 224 ALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred EEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcC---------------CCCcEEEEEECCCCCEEEcc
Confidence 466666 555 444432 111 133578999995 6664221 11235999999888887765
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
.........+++|||+.++++... ...|+++++++... +.+.. ..+......+.+||+..+
T Consensus 284 ~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt~-~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 284 DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRITW-EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEeec-CCCCccCEEECCCCCEEE
Confidence 544455678999999977555432 24788888765432 22211 112234566788886433
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.019 Score=54.52 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=78.3
Q ss_pred EcCCCCEEEEecCCeEEEEE--CCeee----E----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcc
Q 018144 86 MDKNGVIYTATRDGWIKRLQ--DGTWV----N----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 147 (360)
Q Consensus 86 ~d~~G~l~v~~~~G~I~~~~--~g~~~----~----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~ 147 (360)
.+.+|.+|+++.+|.|+.++ +|+.. . ....+|+||+++...-++.+| .+| ...... ..+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~- 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS- 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC-
Confidence 56689999999999999998 45421 0 012368899998766688999 488 443322 1221
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----CCcCcceEEEecCCCEEE
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDYVV 222 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----~l~~pngia~~~dg~~l~ 222 (360)
...... .+-.+|.+|+.. ..+.++.+|.++|+.....+ .+....... ..++ .+|
T Consensus 143 ~~~~~~-~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy 201 (370)
T COG1520 143 PYYASP-PVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVY 201 (370)
T ss_pred eEEecC-cEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eEE
Confidence 111222 344678899852 24689999999887754311 112222222 3344 477
Q ss_pred EEeCC-CCEEEEEEec
Q 018144 223 VCESW-KFRCRKYWLK 237 (360)
Q Consensus 223 v~~t~-~~~i~~~~~~ 237 (360)
+.... ...++.+++.
T Consensus 202 ~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 202 VGSDGYDGILYALNAE 217 (370)
T ss_pred EecCCCcceEEEEEcc
Confidence 77653 3478888884
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00018 Score=40.95 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=24.7
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEE
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKY 234 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~ 234 (360)
+..|.|++++++|+ +||+|+.+++|.+|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 45799999998885 99999999999876
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.018 Score=57.32 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=61.3
Q ss_pred cEEEEEcCCC-----CeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc------Ccce-eeeccCCCC-
Q 018144 187 GQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKL-ETFAENLPG- 253 (360)
Q Consensus 187 g~l~~~d~~t-----g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~------~~~~-~~~~~~~~g- 253 (360)
++|..+|..+ .++......-..|.|++++|||+++|++....+.+..+|....+ +.-. .+..+..-|
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888876 34555555667899999999999999999988999999975321 1101 112221112
Q ss_pred CCceeEEcCCCCEEEEEec
Q 018144 254 APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~ 272 (360)
.|-...+|.+|+.|++++-
T Consensus 376 GPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CcceEEECCCCCEEEeEee
Confidence 4778899999999999874
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.09 Score=51.02 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=71.7
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC--C
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--F 229 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~--~ 229 (360)
...+++||+ |+++... ...-.|+.++.++++.+.+..........+++|||+.++++...+ .
T Consensus 288 ~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 456888885 5553211 012368888877676655432222334578999999887665433 3
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 308 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 308 (360)
.|+.+++++.. ...+... .......+.+||+ |+.+.... ...
T Consensus 353 ~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~--------------------------------g~~ 395 (427)
T PRK02889 353 KLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG--------------------------------GRS 395 (427)
T ss_pred EEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC--------------------------------CCE
Confidence 68888876532 2222211 1234567888886 33333321 124
Q ss_pred EEEEECCCCcEEEEEeCCCC
Q 018144 309 HLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 309 ~v~~~~~~g~~~~~~~~~~g 328 (360)
.++.++.+|+....+..+.|
T Consensus 396 ~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 396 VLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred EEEEEECCCCceEEeecCCC
Confidence 67778888887776655555
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.057 Score=52.56 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=56.8
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
.....+.+||+ |.++... .....|+.+|..+++.+.+...-......+++|||+.++++...
T Consensus 204 v~~p~wSpDG~~lay~s~~---------------~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYA---------------NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred eEeeEECCCCCEEEEEEec---------------CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 44567889995 4443211 12357999999888776554322233567899999987666432
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.+++++... ..+. ..++......+++||+
T Consensus 269 ~~~Iy~~d~~~~~~---~~Lt-~~~~~~~~~~~spDG~ 302 (435)
T PRK05137 269 NTDIYTMDLRSGTT---TRLT-DSPAIDTSPSYSPDGS 302 (435)
T ss_pred CceEEEEECCCCce---EEcc-CCCCccCceeEcCCCC
Confidence 34688888865432 2222 1222333456677775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.048 Score=53.93 Aligned_cols=127 Identities=11% Similarity=0.025 Sum_probs=69.6
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEe-----------------CCCCEEEEEEecCCcCcceee
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE-----------------SWKFRCRKYWLKGERKGKLET 246 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~-----------------t~~~~i~~~~~~g~~~~~~~~ 246 (360)
...|.++.+|..+|+........ -.+++.++ +.+|+.. ...++|+.+|.+..+.-....
T Consensus 308 ~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 308 PKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred CCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 34678999999999875432111 12344444 3466642 124578888875332111111
Q ss_pred eccCC----CCCC--ceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE
Q 018144 247 FAENL----PGAP--DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI 319 (360)
Q Consensus 247 ~~~~~----~g~p--d~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~ 319 (360)
..... .+.| .+-..-.++.+|++... +.|+.+|. +|++
T Consensus 384 ~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~d-----------------------------------G~l~ald~~tG~~ 428 (488)
T cd00216 384 EGTIRDSWNIGFPHWGGSLATAGNLVFAGAAD-----------------------------------GYFRAFDATTGKE 428 (488)
T ss_pred CCccccccccCCcccCcceEecCCeEEEECCC-----------------------------------CeEEEEECCCCce
Confidence 11000 0011 11122334678888754 68999995 7999
Q ss_pred EEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 320 IRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 320 ~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
+..++.+.+.. ..+ .+...+|++|+++..+
T Consensus 429 lW~~~~~~~~~-a~P-~~~~~~g~~yv~~~~g 458 (488)
T cd00216 429 LWKFRTPSGIQ-ATP-MTYEVNGKQYVGVMVG 458 (488)
T ss_pred eeEEECCCCce-EcC-EEEEeCCEEEEEEEec
Confidence 98887755431 111 1234578999998765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.1 Score=50.75 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred CeEEEEeCCC---cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 117 SHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 117 g~L~v~~~~~---gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
..|+.+.... .++.++ .+| .+.+.. ..+ ......+++||. |+++-+. .....|+
T Consensus 216 ~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~---------------~g~~~Iy 275 (433)
T PRK04922 216 KKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR---------------DGNPEIY 275 (433)
T ss_pred CEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC---------------CCCceEE
Confidence 3455444332 377777 566 544432 222 123568899995 6664221 1124699
Q ss_pred EEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 191 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 191 ~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.+|.++++.+.+..........++++||+.++++... ...|+.++.++.+. +.+. ..........+.++|+.
T Consensus 276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASVSPDGKK 349 (433)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEECCCCCE
Confidence 9999888877654433334567899999977766532 23588888765322 2221 11123345677888863
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.1 Score=50.42 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=71.9
Q ss_pred EEEEeCC---CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 119 LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 119 L~v~~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+|+.... ..|+.++ .+| .+.+.. ..+. .....+.+|| .|.++-+. .....|+.+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~ 262 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSKDGSKLLLTMAP---------------KGQPDIYLY 262 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECCCCCEEEEEEcc---------------CCCcEEEEE
Confidence 6654433 2488888 677 666543 2221 1123578898 46665321 123579999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
|.++++.+.+...-..-....++|||+.++++... ...|+++++++.... .+... +. .+..++++|...+
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia 334 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE---QVVFH--GK-NNSSVSTYKNYIV 334 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE---eCccC--CC-cCceECCCCCEEE
Confidence 98888777654332222345799999888877643 237999998764322 11111 11 1347788887444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.15 Score=50.52 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=114.4
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE-------------E----EecCCeEEEEeC---------CCcEEEEc-CCC-eEE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN-------------W----KFIDSHLIICDN---------ANGLHKVS-EDG-VEN 138 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~-------------~----~~~~g~L~v~~~---------~~gl~~~~-~~g-~~~ 138 (360)
++.+|+++.+|.|+.+| +|+..- + ...++.+|+++. ...++.+| .+| ...
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 38999999999999999 674320 0 112456777653 24578899 778 333
Q ss_pred EeeccCCcc--cc---------------ccccEEEcC-CCcEEEEeCCCCCCCccceec--ccccCCccEEEEEcCCCCe
Q 018144 139 FLSYVNGSK--LR---------------FANDVVEAS-DGSLYFTVSSSKYLPHEYCLD--ILEGKPHGQLLKYDPSSNI 198 (360)
Q Consensus 139 l~~~~~~~~--~~---------------~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tg~ 198 (360)
-........ .. .-...++|+ .|.+|+........ .+... .......+.|+.+|.+||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~--~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPW--NWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCC--ccCCccCCCCCCceeeEEEEcCCCCC
Confidence 221111000 00 001345664 56899975431000 00000 0001123589999999998
Q ss_pred EEEEeCCC-------cCcceEEEe----cCCC---EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 199 TTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 199 ~~~~~~~l-------~~pngia~~----~dg~---~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
........ ..+....+. -+|+ .+|+.. ..++++.++.+..+. .+..... -.++..++ +
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcE----eeEeEee--ccccccCC-c
Confidence 76543211 111111221 2333 355544 457899999854322 1111110 11234444 6
Q ss_pred CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC------cccceeeE
Q 018144 265 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ------LMSFVTSG 337 (360)
Q Consensus 265 ~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~------~~~~~t~~ 337 (360)
.+|++....... ++............+.|..+|. +|+++......... .....+.+
T Consensus 340 ~vyv~~~~~~~~-----------------~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 340 LVYLGAFHIPLG-----------------LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred eEEEcccccccc-----------------CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 788865321000 0000000001223578999995 79988776554110 00112334
Q ss_pred EEECCEEEEEeCCC
Q 018144 338 LQVDNHLYVISLTS 351 (360)
Q Consensus 338 ~~~~g~Lylgs~~~ 351 (360)
...++.||+++..+
T Consensus 403 ~~~g~~v~~g~~dG 416 (488)
T cd00216 403 ATAGNLVFAGAADG 416 (488)
T ss_pred EecCCeEEEECCCC
Confidence 55667888887533
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0015 Score=63.21 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=78.1
Q ss_pred ccceEecCCCCCCcceEEEcC-CCCEEEEecCCe-EEEEE---------CCeeeEEEecCCeEEEEeCC-CcEEEEcCCC
Q 018144 68 QDFIKVGEGSVNHPEDASMDK-NGVIYTATRDGW-IKRLQ---------DGTWVNWKFIDSHLIICDNA-NGLHKVSEDG 135 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~-~G~l~v~~~~G~-I~~~~---------~g~~~~~~~~~g~L~v~~~~-~gl~~~~~~g 135 (360)
..+..++.-++.+||.|++.+ .|.+|+...+++ --. + -|.+..|....+. .-++.. =-++....+.
T Consensus 406 ~AA~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d-~t~~~ftWdlF~~aG~~ 483 (616)
T COG3211 406 LAADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGD-HTDTKFTWDLFVEAGNP 483 (616)
T ss_pred HHHHHhCCccccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCC-ccCccceeeeeeecCCc
Confidence 445667777899999999997 678999874332 100 0 0111111111110 000000 0011111000
Q ss_pred --eEE-EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcc
Q 018144 136 --VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFAN 210 (360)
Q Consensus 136 --~~~-l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pn 210 (360)
.+. ........-+..|++|++|+.|+|||....+.-..++.. .+ ...+..=++++++++.+..+ -+.-.
T Consensus 484 ~~~~~~~~~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~t 557 (616)
T COG3211 484 SVLEGGASANINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEFT 557 (616)
T ss_pred cccccccccCcccccccCCCceEECCCCCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCcceee
Confidence 000 001111233678999999999999997654211111100 01 11344445677777766543 23567
Q ss_pred eEEEecCCCEEEEEeC
Q 018144 211 GVALSRDEDYVVVCES 226 (360)
Q Consensus 211 gia~~~dg~~l~v~~t 226 (360)
|.+++||++.+||.-.
T Consensus 558 G~~FspD~~TlFV~vQ 573 (616)
T COG3211 558 GPCFSPDGKTLFVNVQ 573 (616)
T ss_pred cceeCCCCceEEEEec
Confidence 9999999999998854
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0046 Score=59.96 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=18.1
Q ss_pred CCceeEEcCCCCEEEEEecC
Q 018144 254 APDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~~ 273 (360)
.||||++|+.|+|||.+-+.
T Consensus 501 ~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 501 SPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred CCCceEECCCCCEEEEecCC
Confidence 59999999999999998763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.14 Score=49.76 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=88.6
Q ss_pred eEEEcCCCC-E-EEEec--CCeEEEEE--CCeeeEEE-----------ecCC-eEEEEeCCC---cEEEEc-CCC-eEEE
Q 018144 83 DASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWK-----------FIDS-HLIICDNAN---GLHKVS-EDG-VENF 139 (360)
Q Consensus 83 ~i~~d~~G~-l-~v~~~--~G~I~~~~--~g~~~~~~-----------~~~g-~L~v~~~~~---gl~~~~-~~g-~~~l 139 (360)
+.++.+||. | |+... +..|+.++ +|+.+.+. .++| .|++..... .|+.++ +++ .+.+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence 446777774 3 33322 23577777 44333221 1233 455543222 477778 566 5555
Q ss_pred eeccCCccccccccEEEcCCCc-EEEE-eCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~-l~vt-d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d 217 (360)
.... .......+.+||+ |+++ |.. ..-.|+.+|.++++.+.+..........+++||
T Consensus 283 t~~~-----~~~~~~~wSPDG~~I~f~s~~~----------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 283 TDGR-----SNNTEPTWFPDSQNLAYTSDQA----------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred cCCC-----CCcCceEECCCCCEEEEEeCCC----------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 3221 1234668889996 5443 211 123689999887777665433334456889999
Q ss_pred CCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 218 EDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 218 g~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
|+.++++... ...|+.+++++.. .+.+... ..-.+..+.+||...+.
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEE
Confidence 9988776543 2457788876532 2333221 11224567888974443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0071 Score=52.33 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=52.3
Q ss_pred CeEEEEeCCC-cE--EEEc-CCC-e---EEEeeccC--CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCc
Q 018144 117 SHLIICDNAN-GL--HKVS-EDG-V---ENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 117 g~L~v~~~~~-gl--~~~~-~~g-~---~~l~~~~~--~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
..+|+.|..+ -+ +.+| ++| + +.+.+.-. ...-..|+++++|.+|+|||+.-+ .
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g 232 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------G 232 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------C
Confidence 3467666543 45 4445 566 2 22322111 111247999999999999998533 5
Q ss_pred cEEEEEcCCCCeEEEE-eCCCcCcceEEEecC-CCEEEEEe
Q 018144 187 GQLLKYDPSSNITTLV-ADGFYFANGVALSRD-EDYVVVCE 225 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~-~~~l~~pngia~~~d-g~~l~v~~ 225 (360)
++|+++||.||+.-.. .-........|+.-. =+.+|++.
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 7899999999976432 112223344555322 23455553
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.012 Score=58.43 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=86.5
Q ss_pred CCCCCCcceEEE---cC-CCCEEEEe--cCCeEEEEE-CCeeeE-------EEecCCeEEEEeCCC-c-EEEEc---CCC
Q 018144 75 EGSVNHPEDASM---DK-NGVIYTAT--RDGWIKRLQ-DGTWVN-------WKFIDSHLIICDNAN-G-LHKVS---EDG 135 (360)
Q Consensus 75 ~~~~~~Pe~i~~---d~-~G~l~v~~--~~G~I~~~~-~g~~~~-------~~~~~g~L~v~~~~~-g-l~~~~---~~g 135 (360)
.|+ ..=|.+++ ++ ...+|+++ .++.|||+- +..... -...+|+||++.... + +-.+. .++
T Consensus 241 lGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~~~~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~~ 319 (524)
T PF05787_consen 241 LGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDRAANRDLLDEGTLYAAKFNQDGTGEWVPLGHGQG 319 (524)
T ss_pred ccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCcccchhhhhhhCCEeceEEECCCCcEEEEECCCccc
Confidence 344 35566777 54 45789998 467899996 433210 113478999987552 2 22222 111
Q ss_pred -eE---------------EEe-eccCCccccccccEEEcC-CCcEEEEeCCCC-CCCcccee-cccccCCccEEEEEcCC
Q 018144 136 -VE---------------NFL-SYVNGSKLRFANDVVEAS-DGSLYFTVSSSK-YLPHEYCL-DILEGKPHGQLLKYDPS 195 (360)
Q Consensus 136 -~~---------------~l~-~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~-~~~~~~~~-~~~~~~~~g~l~~~d~~ 195 (360)
++ ..+ .......+..|.++.+++ +|.+||+-+... ........ ........|.|+++++.
T Consensus 320 ~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~ 399 (524)
T PF05787_consen 320 GLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD 399 (524)
T ss_pred ccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc
Confidence 10 011 111224678899999987 479999976532 10000000 01123346899999987
Q ss_pred CC-------eEEEEeC------------------CCcCcceEEEecCCCEEEEEeCCCC
Q 018144 196 SN-------ITTLVAD------------------GFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 196 tg-------~~~~~~~------------------~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+ +++.+.. .+..|-.|+++++|+ ||+++-...
T Consensus 400 ~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 400 GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred CCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 55 3333221 255788999999998 777765443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.031 Score=47.61 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=31.6
Q ss_pred ccEEEEEcCCCCeEEEEeC-------------CCcCcceEEEecCCCEEEEEeC
Q 018144 186 HGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~-------------~l~~pngia~~~dg~~l~v~~t 226 (360)
+.+|.|++|++|++....+ ....+||||.+++++.+|++.-
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 3579999999999876432 1236799999999988988854
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.025 Score=53.22 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCEEEEe-cCCeEEEEE-CCeeeEEEe--------------cCCe---EEEEeCC----C--cEEEEc-CCC-eEEEe
Q 018144 88 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKF--------------IDSH---LIICDNA----N--GLHKVS-EDG-VENFL 140 (360)
Q Consensus 88 ~~G~l~v~~-~~G~I~~~~-~g~~~~~~~--------------~~g~---L~v~~~~----~--gl~~~~-~~g-~~~l~ 140 (360)
+...+++++ .+++++.|+ +|+...... -+|+ |.+++.. + .+++++ .++ ++.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 355677777 778899999 775332110 0222 4444322 2 366677 466 65553
Q ss_pred eccC--CccccccccEEEc---CCCcEEEEeCCCCCCCccceecccccCCccEE--EEEc-CCCCeEEE----EeCCCcC
Q 018144 141 SYVN--GSKLRFANDVVEA---SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYD-PSSNITTL----VADGFYF 208 (360)
Q Consensus 141 ~~~~--~~~~~~~n~l~~d---~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l--~~~d-~~tg~~~~----~~~~l~~ 208 (360)
.... ...+..++++|.- .+|.+|+--. ...|.+ |++. ...|.+.- -......
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~----------------~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ 209 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVN----------------GKDGRVEQYELTDDGDGKVSATLVREFKVGSQ 209 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE----------------ETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEe----------------cCCceEEEEEEEeCCCCcEeeEEEEEecCCCc
Confidence 2110 1123457788874 3577776321 123433 3332 23343211 1123457
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
+.|++.|.....||++|-. ..|++|+.+..
T Consensus 210 ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~ 239 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEED-VGIWRYDAEPE 239 (381)
T ss_dssp EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred ceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence 8999999988899999985 68999998743
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=49.61 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=57.7
Q ss_pred ccEEEcCCCc-EEE-EeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 152 NDVVEASDGS-LYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 152 n~l~~d~dG~-l~v-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
....+++||+ |.+ ++.. ....|+.+|.++++.+.+...-......+++|||+.++++...
T Consensus 202 ~~p~wSpDG~~la~~s~~~----------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQ----------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred eeeeECCCCCEEEEEEcCC----------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 4557888985 544 3211 1246999999888776654322233458899999988765432
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEE
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 269 (360)
...|+++++++... +.+. ...+......+++||. |++.
T Consensus 266 ~~~Iy~~d~~~~~~---~~lt-~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 266 NPEIYVMDLASRQL---SRVT-NHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred CceEEEEECCCCCe---EEcc-cCCCCcCCeEECCCCCEEEEE
Confidence 34799999875432 2222 1222333456677775 4444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.059 Score=50.87 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=126.2
Q ss_pred ceEEEcCCCCE-EEEecCCeEEEEE-CCee----eEEE-----------ecCC--eEEEEeCCCcEEEEc-CCC-eEEEe
Q 018144 82 EDASMDKNGVI-YTATRDGWIKRLQ-DGTW----VNWK-----------FIDS--HLIICDNANGLHKVS-EDG-VENFL 140 (360)
Q Consensus 82 e~i~~d~~G~l-~v~~~~G~I~~~~-~g~~----~~~~-----------~~~g--~L~v~~~~~gl~~~~-~~g-~~~l~ 140 (360)
.+|-+.+.-.| .++.-+|.+..+. +|+. +.+. .+.| +++.+....=++.+| .++ ++.+.
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 45666665444 4555666544444 5532 2211 1234 355544444466677 666 55543
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. .+....+..-..+.+++++.... + ..|.|+.+...|+++..-..--....+++|+.|++.
T Consensus 297 ~~-~g~e~~~~e~FeVShd~~fia~~----------------G-~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 297 PP-YGVEEKSMERFEVSHDSNFIAIA----------------G-NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred CC-CCcccchhheeEecCCCCeEEEc----------------c-cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 22 22222355667788888754432 1 256788887777665322222234567899999998
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc--------hhHHHHhhcchh-HHHHH
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD--------ARRMKILNSSKL-IKHVL 291 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~--------~~~~~~~~~~~~-~r~~~ 291 (360)
||++... +.|+.+++... .-...|.+...-.-..++...+|. |+|+...+ +.+ +....|. ++.++
T Consensus 359 l~~~~~~-GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~--~~s~~PkPik~~d 432 (514)
T KOG2055|consen 359 LLASGGT-GEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSC--FASTNPKPIKTVD 432 (514)
T ss_pred EEEEcCC-ceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchh--hccCCCCchhhhh
Confidence 8877654 58999998643 223344433222234466667776 55543321 111 1222222 22221
Q ss_pred ---HhCCcc-------ccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 292 ---AAYPKL-------FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 292 ---~~~~~~-------~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
..+-.+ +--+-.......+-.+. |.-.++.+|..+. ..+..++++.+. +|.|-+|+-.+ ++..++
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n-~~vg~vtc~aFSP~sG~lAvGNe~g-rv~l~k 510 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN-TKVGHVTCMAFSPNSGYLAVGNEAG-RVHLFK 510 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC-CcccceEEEEecCCCceEEeecCCC-ceeeEe
Confidence 111000 00000011112222222 3444555555553 447888999886 48888887643 444444
Q ss_pred C
Q 018144 359 L 359 (360)
Q Consensus 359 l 359 (360)
|
T Consensus 511 L 511 (514)
T KOG2055|consen 511 L 511 (514)
T ss_pred e
Confidence 3
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.28 Score=50.28 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE---C-CeeeE----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ---D-GTWVN----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~---~-g~~~~----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
.|=..|++|++|...+.+ .+|.|.+++ + ...+. +....+++..++..+-+.++. +.+ ...+..
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~ 93 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA 93 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceee
Confidence 455678999988654444 788888887 2 12222 222334455555444444444 333 221111
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~ 220 (360)
.+. ..+++++++.+|+..+.- ...-.|-.++..+...+....+...| -++.++|++++
T Consensus 94 Rft----lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 94 RFT----LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eee----ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 111 125788999999866532 22234555665544444444555444 48899999986
Q ss_pred EEEEeCCCCEEEEEEecCC
Q 018144 221 VVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~ 239 (360)
|-++. .++.|..|+++..
T Consensus 153 LAvss-~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 153 LAVSS-CDGKVQIWDLQDG 170 (933)
T ss_pred EEEEe-cCceEEEEEcccc
Confidence 65555 4678999998643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.21 Score=48.31 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=104.5
Q ss_pred EEcCCCC--EEEEe-c--CCeEEEEE--CCeeeEEEe-----------cCC-eEEEEeCC---CcEEEEc-CCC-eEEEe
Q 018144 85 SMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKF-----------IDS-HLIICDNA---NGLHKVS-EDG-VENFL 140 (360)
Q Consensus 85 ~~d~~G~--l~v~~-~--~G~I~~~~--~g~~~~~~~-----------~~g-~L~v~~~~---~gl~~~~-~~g-~~~l~ 140 (360)
.+.++|. +|+.+ . +..||.++ +|+.+.+.. ++| .|.+.... ..++.++ .++ .+.+.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT 273 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT 273 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc
Confidence 4556764 56554 3 34688888 554433321 133 34433221 2477777 555 55543
Q ss_pred eccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
.. .+. -....+.+|| .|+|+... ...-.|+++|.++++.+.+..... .+ ..++|||+
T Consensus 274 ~~-~~~----d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~ 331 (419)
T PRK04043 274 NY-PGI----DVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKN 331 (419)
T ss_pred cC-CCc----cCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCC
Confidence 21 110 1123688999 58776432 112379999999888866543211 13 48999999
Q ss_pred EEEEEeCCC--------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHH
Q 018144 220 YVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 220 ~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
.+.++.... ..|+.+++++.. .+.+... +.-....+.+||. |+.+....
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~----------------- 389 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLG----------------- 389 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccC-----------------
Confidence 777765432 478888886542 2333221 1222366788886 44443321
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 329 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~ 329 (360)
....+..++.+|.....+....|.
T Consensus 390 ---------------~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 390 ---------------NQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred ---------------CcEEEEEEecCCCeeEEeecCCCc
Confidence 135688889999877777655553
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.072 Score=48.16 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred ceEEEec--CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-CCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 210 NGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 210 ngia~~~--dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
.|+|+.. .+++||.++..+++|-+||-+-.+......|.+. +|. .|-||.- -.|+|||.-........|
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d----- 214 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRND----- 214 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccc-----
Confidence 4677664 3679999999999999997542222111223322 221 3666643 347899976541100000
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE-------ECCEEEEEeCCCCeEEEE
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-------VDNHLYVISLTSNFIGKV 357 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-------~~g~Lylgs~~~~~i~~~ 357 (360)
- ......|.|-.||.+|+.++.+.+... ++.+-+++. -.|.|.||++...+|..+
T Consensus 215 ---------------~-v~G~G~G~VdvFd~~G~l~~r~as~g~--LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF 276 (336)
T TIGR03118 215 ---------------E-VAGAGLGYVNVFTLNGQLLRRVASSGR--LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY 276 (336)
T ss_pred ---------------c-ccCCCcceEEEEcCCCcEEEEeccCCc--ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence 0 012335789999999999999865333 455555544 138899999999999888
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
+.
T Consensus 277 D~ 278 (336)
T TIGR03118 277 DP 278 (336)
T ss_pred cC
Confidence 73
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.054 Score=51.44 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=59.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
.|-.||..+++++++..++.....+.+++||+.+.+++. +..|+.++++.. +.+..-....++..++...+++ -|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence 688888888998988888988999999999998877775 578999999753 3333322334556667777765 56
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
+|-.-
T Consensus 458 iAYaf 462 (668)
T COG4946 458 IAYAF 462 (668)
T ss_pred EEEec
Confidence 76544
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.033 Score=52.81 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=44.4
Q ss_pred CcceEEEecCC------CEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEEcCCCCEEEEEec
Q 018144 208 FANGVALSRDE------DYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 208 ~pngia~~~dg------~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-|.|++|.... +.++|+....-.+.+.++++...-..+.+.. ...+.|-++++++||.|++++..
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 46788887431 2489998877678887777652222222222 23378999999999999999876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.26 Score=47.37 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
..|+.+|.++++.+.+..........++++||+.++++.... .+|+.+++++. ..+.+.. ........+.++|
T Consensus 302 ~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg 376 (417)
T TIGR02800 302 PQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNG 376 (417)
T ss_pred ceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCC
Confidence 369999988777766554444556788999999888876543 37888887652 2233321 1122344677777
Q ss_pred C-EEEEE
Q 018144 265 T-FWIAI 270 (360)
Q Consensus 265 ~-lwva~ 270 (360)
+ |+.+.
T Consensus 377 ~~l~~~~ 383 (417)
T TIGR02800 377 RMILYAT 383 (417)
T ss_pred CEEEEEE
Confidence 5 44443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.14 Score=46.64 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=89.8
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.-++++||+ ||.|.... ....|.|-.||.. ..+.+ +....-.|.-+.+.+||+.|.|++-+-
T Consensus 55 Hg~fs~dG~~LytTEnd~-------------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDY-------------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CEEEcCCCCEEEEecccc-------------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 446888996 55553321 1235788899987 33433 334455799999999999899986431
Q ss_pred C-----------------EEEEEEec-CCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 229 F-----------------RCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 229 ~-----------------~i~~~~~~-g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
. .|..+|.. |....+.+.-.+...-..--++++.+|.+|++......+
T Consensus 121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------------- 186 (305)
T PF07433_consen 121 ETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------------- 186 (305)
T ss_pred ccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC--------------
Confidence 0 12222211 111111110000000013347789999999998752100
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCC---CcccceeeEEEEC--CEEEEEeCCCCeEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG---QLMSFVTSGLQVD--NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g---~~~~~~t~~~~~~--g~Lylgs~~~~~i~~~~l 359 (360)
......|.... .|+.+..+.-++. ...+++.+|..+. +.+.+++-.++.+.+++.
T Consensus 187 -------------~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 187 -------------GDAPPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred -------------CccCCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 00112333444 3333555544432 1235677777753 467788888998888864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.19 Score=44.41 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=79.5
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CC-eeeEE------------EecCCeEEEEeCCCcEEEEc-C-CC
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG-TWVNW------------KFIDSHLIICDNANGLHKVS-E-DG 135 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g-~~~~~------------~~~~g~L~v~~~~~gl~~~~-~-~g 135 (360)
+-++++++--.+ + +..+.+|+.+|++|.++ +| +...+ ...+|-||.+++++..+.+| . .+
T Consensus 50 ilg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 50 ILGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred hhCceeeeeeEE-E--CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 444444444333 2 34577888888898888 55 22211 23467799999888899999 3 34
Q ss_pred eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--C----CCcC
Q 018144 136 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D----GFYF 208 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~----~l~~ 208 (360)
-++.....|..+..| ++++ +|.||++. ..|.|++.+++++..+.+- + -+..
T Consensus 127 -cVykskcgG~~f~sP---~i~~g~~sly~a~------------------t~G~vlavt~~~~~~~~~w~~~~~~PiF~s 184 (354)
T KOG4649|consen 127 -CVYKSKCGGGTFVSP---VIAPGDGSLYAAI------------------TAGAVLAVTKNPYSSTEFWAATRFGPIFAS 184 (354)
T ss_pred -eEEecccCCceeccc---eecCCCceEEEEe------------------ccceEEEEccCCCCcceehhhhcCCccccC
Confidence 112223334333333 5666 88999964 3478999998877544321 1 1112
Q ss_pred c----ceEEE-ecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 209 A----NGVAL-SRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 209 p----ngia~-~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
| ..+.+ .-||..+-+.+ .+..|+|+..+|+
T Consensus 185 plcv~~sv~i~~VdG~l~~f~~-sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 185 PLCVGSSVIITTVDGVLTSFDE-SGRQVWRPATKGP 219 (354)
T ss_pred ceeccceEEEEEeccEEEEEcC-CCcEEEeecCCCc
Confidence 2 22222 23665443443 4467788776654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.14 Score=48.17 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=102.2
Q ss_pred EEEeCCCcEEEEc--CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 120 IICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 120 ~v~~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
+++..+.|.+.|. ++| +........+ -.....++.+||.|+.+ +..+|.|-.||.+
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgt-----------------gt~d~~vkiwdlk 377 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGT-----------------GTPDGVVKIWDLK 377 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEec-----------------cCCCceEEEEEcC
Confidence 3333456677666 566 3333222111 12446688899998886 5567777778876
Q ss_pred CCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 018144 196 SNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 274 (360)
Q Consensus 196 tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~ 274 (360)
.+....-..+ -.-...|+|+.+| ++.++......|..+|+. +...+..+.-....-...+.+|..|.+.+....
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-- 452 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-- 452 (506)
T ss_pred CccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEeh--hhcccceeeccccccceeEEEcCCCCeEEeecc--
Confidence 4432111122 1223578999888 566776666678888874 333444443111112456889999976654432
Q ss_pred hhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC---CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 275 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE---DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 275 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~---~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
.-.|+.+.. +.+.+..+++-.| ..+++.+.+..-|+++-..
T Consensus 453 --------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 453 --------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred --------------------------------eeEEEEEecccccceeeehhhhccc----ccceeeecccceEEeeccc
Confidence 125666664 3344555555444 3567777777788887777
Q ss_pred CeEEEE
Q 018144 352 NFIGKV 357 (360)
Q Consensus 352 ~~i~~~ 357 (360)
+++.++
T Consensus 497 d~~l~~ 502 (506)
T KOG0289|consen 497 DAILRL 502 (506)
T ss_pred hhheEE
Confidence 777554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.15 Score=50.80 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E--------------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeec
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N--------------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~--------------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~ 142 (360)
+|.||+++.+|.|+.+| +|+.. . ....++++|+++.+..++.+| .+| ...-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~- 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK- 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc-
Confidence 78999999889999999 67421 0 011247899998888899999 788 322111
Q ss_pred cCCcc--ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 143 VNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 143 ~~~~~--~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
..... ......-.+ .+|.||+..++..+ ...|.|+.+|.+||+...
T Consensus 148 ~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 148 NGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred cccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence 11100 000011122 25788886543221 124678888888887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.049 Score=49.61 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred cCCccEEEEEcCCCCeEEEEeC---CCcCcceEEEecCCCEEEEEeC----CCCEEEEEEecCCcCcceeeeccCCCCCC
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCES----WKFRCRKYWLKGERKGKLETFAENLPGAP 255 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~---~l~~pngia~~~dg~~l~v~~t----~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 255 (360)
.++.-.++++|+.+++...... +-.|----++++||+.||.+|. +.+.|-+||... .......|...-- -|
T Consensus 24 RRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GI-GP 101 (305)
T PF07433_consen 24 RRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGI-GP 101 (305)
T ss_pred eCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCc-Ch
Confidence 3455568889999888765432 1122223458999999999965 456788888762 2223333332222 48
Q ss_pred ceeEEcCCC-CEEEEEecCchhHHHHhhcchhH-HH-HHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcc
Q 018144 256 DNINLAPDG-TFWIAIIKLDARRMKILNSSKLI-KH-VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLM 331 (360)
Q Consensus 256 d~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~-r~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~ 331 (360)
..+.+.+|| +|.||+.+. ...|.. |+ +.. ..-...+..+| .+|++++...-|.....
T Consensus 102 Hel~l~pDG~tLvVANGGI--------~Thpd~GR~kLNl-----------~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 102 HELLLMPDGETLVVANGGI--------ETHPDSGRAKLNL-----------DTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred hhEEEcCCCCEEEEEcCCC--------ccCcccCceecCh-----------hhcCCceEEEecCCCceeeeeecCccccc
Confidence 999999999 899998873 233322 11 110 11123456674 57888877655443212
Q ss_pred cceeeEEEE-CCEEEEEe
Q 018144 332 SFVTSGLQV-DNHLYVIS 348 (360)
Q Consensus 332 ~~~t~~~~~-~g~Lylgs 348 (360)
..+--+... +|.+|++-
T Consensus 163 lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred cceeeEEecCCCcEEEEE
Confidence 223333333 47777764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.25 Score=45.44 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=59.8
Q ss_pred ecCCeEEEEeCCCcEEEEc-CCC--eEEEe--eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccE
Q 018144 114 FIDSHLIICDNANGLHKVS-EDG--VENFL--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 114 ~~~g~L~v~~~~~gl~~~~-~~g--~~~l~--~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
..+...||+.. .|++... ..| .+.+. ...++. +..+....++.+++.. ..|.
T Consensus 69 f~~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~~~~~~l~~------------------~~G~ 125 (302)
T PF14870_consen 69 FDGNEGWIVGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALGDGSAELAG------------------DRGA 125 (302)
T ss_dssp EETTEEEEEEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEE------------------TT--
T ss_pred ecCCceEEEcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcCCCcEEEEc------------------CCCc
Confidence 34566787653 4555555 444 44432 223332 3344444555655532 2356
Q ss_pred EEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 189 LLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 189 l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
||+=.-.....+.+..+ ...-+.+..++||+++.|+. .+.+++-.-.|+. ..+.+.........+|.++++|++|
T Consensus 126 iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~--~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS--RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLW 201 (302)
T ss_dssp EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EE
T ss_pred EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--cccEEEEecCCCc--cceEEccCccceehhceecCCCCEE
Confidence 77655433344443332 23445667788997555554 3446654433321 1222222223356788999999999
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
+...+
T Consensus 202 ~~~~G 206 (302)
T PF14870_consen 202 MLARG 206 (302)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 98755
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.31 Score=47.26 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=56.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC--C
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--W 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--~ 227 (360)
....++.+||+ |+++... .....|+.+|..+++...+...-......+++|||+.++++.. +
T Consensus 198 v~~p~wSPDG~~la~~s~~---------------~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFE---------------SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred cccceEcCCCCEEEEEEcc---------------CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 34567889995 5553211 1124699999988877655432223456889999998876533 3
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.++.++... +.+. ...+......+++||.
T Consensus 263 ~~~Iy~~d~~~~~~---~~lt-~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 263 NSQIYTVNADGSGL---RRLT-QSSGIDTEPFFSPDGR 296 (427)
T ss_pred CceEEEEECCCCCc---EECC-CCCCCCcCeEEcCCCC
Confidence 34688888765332 2222 1222333456788886
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0039 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=33.0
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
..++..|+|+++++.++.+|++++....|.+.+++|.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4567899999999999999999999999999998763
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.31 Score=44.50 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=90.7
Q ss_pred EEecCCeEEEEeCCCcEEEE---c---CC----C-eEE-Ee---eccCCccccccccEEEcCCCcEEEEeCCCCCCCccc
Q 018144 112 WKFIDSHLIICDNANGLHKV---S---ED----G-VEN-FL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 176 (360)
Q Consensus 112 ~~~~~g~L~v~~~~~gl~~~---~---~~----g-~~~-l~---~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~ 176 (360)
+...+++||+++.. .|+++ + +. + ... +. ....|. -.+.+|++ .++.+||.++.
T Consensus 54 l~~~~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd--idiHdia~-~~~~l~fVNT~-------- 121 (335)
T TIGR03032 54 LAVSPQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD--IDAHDLAL-GAGRLLFVNTL-------- 121 (335)
T ss_pred eeeeCCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccC--cchhheee-cCCcEEEEECc--------
Confidence 44467889998854 47777 2 11 1 111 11 111121 24678888 67789987643
Q ss_pred eecccccCCccEEEEEcCCCCeEEEE----------eCCCcCcceEEEecCCCEEEEEeCCCC---EEEE---------E
Q 018144 177 CLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFANGVALSRDEDYVVVCESWKF---RCRK---------Y 234 (360)
Q Consensus 177 ~~~~~~~~~~g~l~~~d~~tg~~~~~----------~~~l~~pngia~~~dg~~l~v~~t~~~---~i~~---------~ 234 (360)
-.-|..+++. ..+... .++-++-||+|+. ||+--||+.-+.. .-+| +
T Consensus 122 ---------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vi 190 (335)
T TIGR03032 122 ---------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVI 190 (335)
T ss_pred ---------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEE
Confidence 2335556653 222221 1233567999995 5667887754321 1111 2
Q ss_pred EecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 018144 235 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA 314 (360)
Q Consensus 235 ~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~ 314 (360)
|+. .-+++.+.+. +|..-.. .+|+||+.... .+.|.++|
T Consensus 191 dv~-----s~evl~~GLs-mPhSPRW-hdgrLwvldsg----------------------------------tGev~~vD 229 (335)
T TIGR03032 191 DIP-----SGEVVASGLS-MPHSPRW-YQGKLWLLNSG----------------------------------RGELGYVD 229 (335)
T ss_pred EeC-----CCCEEEcCcc-CCcCCcE-eCCeEEEEECC----------------------------------CCEEEEEc
Confidence 221 1123332221 3444333 25899999987 57999999
Q ss_pred CC-CcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 315 ED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 315 ~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
++ |+......-| | .+.++...++.+++|
T Consensus 230 ~~~G~~e~Va~vp-G----~~rGL~f~G~llvVg 258 (335)
T TIGR03032 230 PQAGKFQPVAFLP-G----FTRGLAFAGDFAFVG 258 (335)
T ss_pred CCCCcEEEEEECC-C----CCcccceeCCEEEEE
Confidence 97 8765555443 2 355566665555554
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.21 Score=47.18 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred EEEEEcCCCCeEEEEe-------CCCcCcceEEEec---CCC-EEEEEeCCCCEEEEEEecCCcCc-----ceeeeccCC
Q 018144 188 QLLKYDPSSNITTLVA-------DGFYFANGVALSR---DED-YVVVCESWKFRCRKYWLKGERKG-----KLETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~-------~~l~~pngia~~~---dg~-~l~v~~t~~~~i~~~~~~g~~~~-----~~~~~~~~~ 251 (360)
++|++|++++.++.+. ..+..+.|+|+-. +|+ +.++.. ..+.+..|.+.....+ ..+.|. .
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~ 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFK--V 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE---
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEec--C
Confidence 6899999888776543 2345688999853 354 333334 3466777766421111 122332 3
Q ss_pred CCCCceeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CC-cEEEEE--eC
Q 018144 252 PGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DG-TIIRNL--VD 325 (360)
Q Consensus 252 ~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g-~~~~~~--~~ 325 (360)
+.-+.++++| +.|.||++... .+|++|+. ++ ..-+.+ ..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~ 251 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASAD 251 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBS
T ss_pred CCcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeeccc
Confidence 4457889997 57789999876 48999864 32 221222 12
Q ss_pred CCCCcccceeeEEEE-----CCEEEEEeCCCCeEEEEeC
Q 018144 326 PTGQLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 326 ~~g~~~~~~t~~~~~-----~g~Lylgs~~~~~i~~~~l 359 (360)
..+. ...+.++... .|+|.++|-.++...+++.
T Consensus 252 g~~l-~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 252 GDGL-VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp SSSB--S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred cccc-ccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 2222 3445554432 2789999999999999875
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=36.49 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRL 104 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~ 104 (360)
+..|.+|++|++|+||+++ .+.+|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999999 66677654
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.5 Score=45.38 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=67.7
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ....+++++||. |+++... .....|+.+|..+++.+.+.
T Consensus 215 ~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spDg~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 215 EIYVQDLATGQREKVAS-FPG----MNGAPAFSPDGSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred EEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEECC---------------CCCccEEEEECCCCCEEECC
Confidence 466777 566 544422 222 233567889985 7665321 11236999998877766654
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
.........++++||+.++++... ...|+.++.++.+. ..+. ..........++++|+..+.
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV---RRLT-FRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEee-cCCCCccCeEECCCCCEEEE
Confidence 433233456889999877665432 33788888765332 2221 11123445677888864443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.45 Score=44.54 Aligned_cols=109 Identities=7% Similarity=-0.046 Sum_probs=55.4
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEE-ecCCcCcceeeeccCCC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYW-LKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~-~~g~~~~~~~~~~~~~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
...+++++.++++ +|+.... + ..++. .++...-+......... .....+.+.+++.+|++...
T Consensus 215 ~~l~~i~~~~~g~-~~~vg~~-G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~------------ 279 (334)
T PRK13684 215 RRLQSMGFQPDGN-LWMLARG-G-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN------------ 279 (334)
T ss_pred ccceeeeEcCCCC-EEEEecC-C-EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC------------
Confidence 4567888888887 4444433 2 34442 33321111000000000 01235667778899997654
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCCeE
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFI 354 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~~i 354 (360)
+.+++-...|+..+....+.+.. .....+.. ++++.|+.+..+--|
T Consensus 280 -----------------------G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 280 -----------------------GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred -----------------------CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceEEECCCceEE
Confidence 45665445566555443333332 23444444 468888887765443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.066 Score=50.34 Aligned_cols=125 Identities=15% Similarity=0.034 Sum_probs=66.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCC-cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC--ceeEEcC
Q 018144 186 HGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLAP 262 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l-~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p--d~i~~d~ 262 (360)
...++.+|.++++.+++.++- ....|..++++.+.+|.... +.+|.+++++..+ +..++. ...+.- .....+.
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE---TTEEEEEEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEE-CCcccccccceeeCC
Confidence 346999999999999887643 23447888898888766554 3589999987643 223332 111111 2344578
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCC
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP 326 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~ 326 (360)
++...++....+. ...-+.++...++++. ..+..+|++++- .|+....+.+.
T Consensus 135 d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 135 DCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp TSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEES
T ss_pred CccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecC
Confidence 8999888765332 2222345666777665 334578899985 46655555443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.55 Score=45.34 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=52.6
Q ss_pred cCCccEEEEEcCCCCeEEEEeC--CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEE
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~--~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~ 260 (360)
+...|.|..++..+|....+.. ......+++.+..+. ++.+.. ...|.++++.+......+.+ .+..-|-++++
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~-Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav 413 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGW-DDTLRVISLKDNGYTKSEVV--KLGSQPKGLAV 413 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEec-CCeEEEEecccCccccccee--ecCCCceeEEE
Confidence 4456788888877665544431 123456777776554 766665 46788888765433333332 23335789999
Q ss_pred cCCCCEEE-EEec
Q 018144 261 APDGTFWI-AIIK 272 (360)
Q Consensus 261 d~~G~lwv-a~~~ 272 (360)
.++|.+-+ ++..
T Consensus 414 ~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 414 LSDGGTAVVACIS 426 (603)
T ss_pred cCCCCEEEEEecC
Confidence 99885444 4443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.34 Score=42.87 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCeee--EE--------E-ecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV--NW--------K-FIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~--~~--------~-~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.|--+.-|..-.+|+|++.+.+..+| +|+.. .+ + ..++.+.++-...+++.++ ++| ...+...
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-
Confidence 45555666677889999888888888 66422 11 0 1244466666667788787 777 3333211
Q ss_pred CCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEec-CCCE
Q 018144 144 NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSR-DEDY 220 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~-dg~~ 220 (360)
+.. .... ..|.+| -||.+ +.++..+.+|+.+.....-. -+...-.+-++++ ++ .
T Consensus 93 ~~v---k~~a-~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~-s 149 (354)
T KOG4649|consen 93 ETV---KVRA-QCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG-S 149 (354)
T ss_pred hhh---ccce-EEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCc-e
Confidence 110 0111 455555 68884 34567888998754332111 1111223345666 55 5
Q ss_pred EEEEeCCCCEEEEEEecC
Q 018144 221 VVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g 238 (360)
||++.+. +++.+...+.
T Consensus 150 ly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 150 LYAAITA-GAVLAVTKNP 166 (354)
T ss_pred EEEEecc-ceEEEEccCC
Confidence 9999885 6788887654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.58 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=19.3
Q ss_pred ceEEEcCCCCEEEEecCCeEEEEE
Q 018144 82 EDASMDKNGVIYTATRDGWIKRLQ 105 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~G~I~~~~ 105 (360)
-++++.++|.+..|+.+|.|+.++
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEe
Confidence 367777888888888888888887
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.052 Score=50.10 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE---------
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--------- 230 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~--------- 230 (360)
.++||.|... .+. .++++.||.+++++.=..+....+| +++++|++.+|++++.-.|
T Consensus 3 ~rvyV~D~~~------------~~~-~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVF------------FHM-TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GG------------GGS-SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCcc------------ccc-cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 5789988641 122 3699999999888755444444555 7789999999999875222
Q ss_pred EEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCC-CEEEEEecC
Q 018144 231 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIKL 273 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G-~lwva~~~~ 273 (360)
|..||.+.-. -..++..... -..+..+.+..|| .++|-+..+
T Consensus 69 v~~~D~~TL~-~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 69 VEIWDTQTLS-PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEETTTTE-EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred EEEEecCcCc-ccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 3445543211 1122221111 1246778888777 488887774
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.59 Score=45.37 Aligned_cols=74 Identities=20% Similarity=0.100 Sum_probs=45.8
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC-
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK- 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~- 228 (360)
.....+++||+ |.++.. ......|+.+|..+++.+.+...-.....++++|||+.|+++....
T Consensus 206 v~~p~wSPDG~~la~~s~---------------~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSF---------------ENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred cccceEcCCCCEEEEEEe---------------cCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC
Confidence 45678899995 433211 0113468899988776655533222334689999999887765322
Q ss_pred -CEEEEEEecCC
Q 018144 229 -FRCRKYWLKGE 239 (360)
Q Consensus 229 -~~i~~~~~~g~ 239 (360)
..|+.+++++.
T Consensus 271 ~~~Iy~~d~~~~ 282 (429)
T PRK01742 271 VLNIYVMGANGG 282 (429)
T ss_pred cEEEEEEECCCC
Confidence 35777777653
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=43.00 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=51.7
Q ss_pred ceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccce
Q 018144 256 DNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV 334 (360)
Q Consensus 256 d~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~ 334 (360)
+++.++++ |.+|++....+-...+ ++..++. ..+.|+++++||..+..+++.+ | +.++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~------~~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~--L~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRD------WVYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--G--LYFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTG------HHHHHHH-----------T---EEEEEEETTTTEEEEEEE--E--ESSE
T ss_pred CceeEecCCCEEEEEeCccccCccc------eeeeeec-----------CCCCcCEEEEECCCCeEEEehh--C--CCcc
Confidence 46889988 9999998864422111 1222222 4447999999999888777764 4 3466
Q ss_pred eeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 335 TSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 335 t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+++.. +..|.++.....+|.|+=|
T Consensus 60 NGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 667665 3679999999999999865
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.46 Score=44.83 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=65.7
Q ss_pred eEEEEE--CCeeeEEEe-------------cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcE
Q 018144 100 WIKRLQ--DGTWVNWKF-------------IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL 162 (360)
Q Consensus 100 ~I~~~~--~g~~~~~~~-------------~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l 162 (360)
.+|.+| +++.+-+.. .+..||.....+.|.+++ .++ .+.+....++- ..--...+++|++.
T Consensus 61 nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~--~g~gt~v~n~d~t~ 138 (386)
T PF14583_consen 61 NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW--KGYGTWVANSDCTK 138 (386)
T ss_dssp EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE--EEEEEEEE-TTSSE
T ss_pred ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc--ccccceeeCCCccE
Confidence 577777 555544332 122343333456788888 666 54443322221 11112234667777
Q ss_pred EEEeCCCCCC-----CccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC-CCEEEEEeCC-----CCEE
Q 018144 163 YFTVSSSKYL-----PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD-EDYVVVCESW-----KFRC 231 (360)
Q Consensus 163 ~vtd~~~~~~-----~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d-g~~l~v~~t~-----~~~i 231 (360)
++.....+-. .-....++++..+..+|+.+|.+||+.+++...-..-+-+.++|. ...+-+|.-+ ..||
T Consensus 139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 6654321111 011234567778889999999999999887765555555666653 2334444322 2367
Q ss_pred EEEEecCC
Q 018144 232 RKYWLKGE 239 (360)
Q Consensus 232 ~~~~~~g~ 239 (360)
+.++.+|.
T Consensus 219 W~i~~dg~ 226 (386)
T PF14583_consen 219 WTINTDGS 226 (386)
T ss_dssp EEEETTS-
T ss_pred EEEEcCCC
Confidence 77776653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.55 Score=46.89 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=28.2
Q ss_pred CceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 306 GGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 306 ~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
..+.+..+|. +|+++..+..+.+. ...+. ....+|++|+....+
T Consensus 480 ~~G~l~a~D~~TGe~lw~~~~g~~~-~a~P~-ty~~~G~qYv~~~~G 524 (527)
T TIGR03075 480 LEGYFKAFDAKTGEELWKFKTGSGI-VGPPV-TYEQDGKQYVAVLSG 524 (527)
T ss_pred CCCeEEEEECCCCCEeEEEeCCCCc-eecCE-EEEeCCEEEEEEEec
Confidence 3578889985 69998888765432 22121 124589999986543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.27 Score=45.66 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred cceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CCee-----------eEEEe-------------c-------
Q 018144 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-----------VNWKF-------------I------- 115 (360)
Q Consensus 69 ~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~-----------~~~~~-------------~------- 115 (360)
.......|-...-.|+....+|.||.|+.|+.|-.++ +|.. ..+.. .
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 3344445556667788888899999999999887776 5521 01100 0
Q ss_pred ------------------CCeEEEEeCCCcEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccc
Q 018144 116 ------------------DSHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 176 (360)
Q Consensus 116 ------------------~g~L~v~~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~ 176 (360)
+.+|.-+.-+.-++..++.. .+.+ +...+. ...+|.+.+.|||+...+-+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi-~rmtgH-q~lVn~V~fSPd~r~IASaS--------- 386 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI-TRMTGH-QALVNHVSFSPDGRYIASAS--------- 386 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch-hhhhch-hhheeeEEECCCccEEEEee---------
Confidence 01222222223343333211 1111 011111 24689999999987555422
Q ss_pred eecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC
Q 018144 177 CLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 255 (360)
Q Consensus 177 ~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 255 (360)
.+..|-.+|..+|++-....+ ..-.+-++++.|-+ |+|+.+....|..++....+ +...+||.-
T Consensus 387 --------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~ 451 (480)
T KOG0271|consen 387 --------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHA 451 (480)
T ss_pred --------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCC
Confidence 234566777777876433332 34567899999985 88888877788888764322 233577776
Q ss_pred ceeE-E--cCCCCEEEEEe
Q 018144 256 DNIN-L--APDGTFWIAII 271 (360)
Q Consensus 256 d~i~-~--d~~G~lwva~~ 271 (360)
|.+. + .+||..-++..
T Consensus 452 DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred ceEEEEEecCCCceeecCC
Confidence 7644 3 57887766543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.53 Score=45.27 Aligned_cols=137 Identities=11% Similarity=0.063 Sum_probs=79.2
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE-CCeeeEEEe------------cCCeEEEEeCCCcEEEEc-CCC--e
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKF------------IDSHLIICDNANGLHKVS-EDG--V 136 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~~~~~------------~~g~L~v~~~~~gl~~~~-~~g--~ 136 (360)
+|+. ...|+.|+.... .||+|+..+.|++=+ .+.+..... +...+++.....+.+++= ... .
T Consensus 325 lPe~-~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~w 402 (626)
T KOG2106|consen 325 LPEQ-FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEW 402 (626)
T ss_pred Cchh-cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeE
Confidence 4443 456677776644 499999777777665 332221111 122234433233333322 222 1
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
+.+. + .....+.+++.|.+-+ ++..|+.+.+|.++..+..+......-+.+.++|
T Consensus 403 t~~~---~----d~~~~~~fhpsg~va~------------------Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp 457 (626)
T KOG2106|consen 403 TKII---E----DPAECADFHPSGVVAV------------------GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP 457 (626)
T ss_pred EEEe---c----CceeEeeccCcceEEE------------------eeccceEEEEecccceeEEEEecCCceEEEEEcC
Confidence 1111 1 1234567788886655 4557899999988766655555555667899999
Q ss_pred CCCEEEEEeCCCCEEEEEEec
Q 018144 217 DEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~ 237 (360)
||.++-+... .+.|+.|..+
T Consensus 458 ~G~~lAvgs~-d~~iyiy~Vs 477 (626)
T KOG2106|consen 458 DGAFLAVGSH-DNHIYIYRVS 477 (626)
T ss_pred CCCEEEEecC-CCeEEEEEEC
Confidence 9997766655 5667777665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.97 Score=43.89 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=55.7
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.|+.++ .+| .+.+.. ..+ ....+++.+||+ |.++-.. ...-.|+.+|.++++.+.+.
T Consensus 229 ~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 229 QLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK---------------DGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred EEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec---------------CCcEEEEEEECCCCCeEeec
Confidence 377777 566 444432 222 123578899996 5554211 01125888998878776665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecC
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKG 238 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g 238 (360)
.........+++|||+.++++... ...|+.++.++
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 444455678999999977766532 34667766654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.31 Score=45.52 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=64.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-E--eCCC-------------cCcceEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-V--ADGF-------------YFANGVA 213 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~--~~~l-------------~~pngia 213 (360)
-+.+|++.++|.+||++-... ......+|++++++ |++.. + ...+ ...-+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 467889989999999875410 00012579999987 65522 2 1111 1223799
Q ss_pred EecCCCEEEEEeCCC---------------CEEEEEEecCC--cCcceeeeccC-----CCCCCceeEEcCCCCEEEEEe
Q 018144 214 LSRDEDYVVVCESWK---------------FRCRKYWLKGE--RKGKLETFAEN-----LPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~---------------~~i~~~~~~g~--~~~~~~~~~~~-----~~g~pd~i~~d~~G~lwva~~ 271 (360)
+++||+.||++.... -+|++|+.... ...++..-.+. ....+..+..-++|+++|-.-
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999777764332 36778887531 12222221221 112355677777888888654
Q ss_pred c
Q 018144 272 K 272 (360)
Q Consensus 272 ~ 272 (360)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 3
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.36 Score=45.06 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=44.0
Q ss_pred CcceEEEecCCCEEEEEeCCC------CEEEEEEecCCcCcceeeeccC-----------CCCCCceeEEcCCCC-EEEE
Q 018144 208 FANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKLETFAEN-----------LPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~------~~i~~~~~~g~~~~~~~~~~~~-----------~~g~pd~i~~d~~G~-lwva 269 (360)
.+-||++.++|. +||++-.. .+|++|+.+|.......+-... ......++++.++|+ ||++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 456899977776 88888788 8999999886543322111100 111245699999998 9999
Q ss_pred EecC
Q 018144 270 IIKL 273 (360)
Q Consensus 270 ~~~~ 273 (360)
+..+
T Consensus 165 ~E~~ 168 (326)
T PF13449_consen 165 MESP 168 (326)
T ss_pred ECcc
Confidence 8763
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.27 Score=44.30 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=76.6
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE---CCeeeEE--------------------E--ecCCeEEEEeC
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVNW--------------------K--FIDSHLIICDN 124 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~---~g~~~~~--------------------~--~~~g~L~v~~~ 124 (360)
.++|...+..||+|.+-.+|..-+++ .++.++.+. ++.+... + ..+++||++-.
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 45666668999999988777666666 677787776 3221111 0 12345777664
Q ss_pred CC--cEEEEc--CCCeEE-EeeccC---CccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 125 AN--GLHKVS--EDGVEN-FLSYVN---GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 125 ~~--gl~~~~--~~g~~~-l~~~~~---~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.+ +|+.++ ++.... ...... +.-+..+.++.+++ .|+++| +.++ ...|..+|.+
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV----------------LS~E-Sr~l~Evd~~ 263 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV----------------LSDE-SRRLLEVDLS 263 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE----------------EecC-CceEEEEecC
Confidence 43 566665 112111 100000 00112233344442 233333 2222 3467777765
Q ss_pred CCeE-EE---------EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 196 SNIT-TL---------VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 196 tg~~-~~---------~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
|++ .. +....+++.||+.+.+|. ||+++-- +..++|..
T Consensus 264 -G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 264 -GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEP-NLFYRFTP 311 (316)
T ss_pred -CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecC-Ccceeccc
Confidence 443 22 112456789999999998 5555442 45777764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.17 Score=44.30 Aligned_cols=119 Identities=12% Similarity=0.131 Sum_probs=69.5
Q ss_pred CcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 126 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 126 ~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
+.+...| .+| ++.+... ..++.+-+..+|+|..+- ..++|..+|+++-.+-.-
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEe------------------cCceeEEeccccccceee
Confidence 4555566 677 4444221 246778889999865431 134677788764332221
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.+--...+...+.|+.. .||+.-....+++||.+... +...+....+|-...+.+.++|.+|.+-.
T Consensus 221 ~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccC
Confidence 12223345566888874 89998878899999986431 22233223445445566777777776543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.09 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++...+||..+.+... +.+++-+-+|... .+......+....++.++.+|.+|++...
T Consensus 242 ~~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 242 STVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred eeEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 34566788874444443 3466655444321 11111122233457778889999998765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.69 Score=40.66 Aligned_cols=169 Identities=15% Similarity=0.145 Sum_probs=91.2
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE-CC-e----------eeEE--EecCCeEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ-DG-T----------WVNW--KFIDSHLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g-~----------~~~~--~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
..-..+.+..+|. +|.|++||.+...| .. . +..+ ....+.|+++|....+...| .+. ...+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 3345566666775 46677888666555 21 0 1111 12356799988766677777 433 33332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCc----CcceEE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFY----FANGVA 213 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~----~pngia 213 (360)
.+. + .++..+++++||...++ ....|..|+++.-+++..... ..+. +.--..
T Consensus 164 Pe~-~---~~i~sl~v~~dgsml~a-----------------~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 164 PED-D---TSIQSLTVMPDGSMLAA-----------------ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred CCC-C---cceeeEEEcCCCcEEEE-----------------ecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 221 1 45778999999987774 233567777776433221111 1111 122345
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++||+++|- +-+....+..++.++-.. .+...+...+-.=+.++..||.+.|...
T Consensus 223 lSPd~k~la-t~ssdktv~iwn~~~~~k--le~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 223 LSPDVKYLA-TCSSDKTVKIWNTDDFFK--LELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred ECCCCcEEE-eecCCceEEEEecCCcee--eEEEeecCCceEEeeeeccCccEEEecC
Confidence 899998554 444556777777665311 1111111112233567788887666543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.57 Score=45.91 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=65.7
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcC-CCCeE-EEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNIT-TLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~tg~~-~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
..++++++.++|.+.++ +..+..|..+|. +.+.. +.+..-....+.++++++++ ++++.+
T Consensus 204 ~~v~~~~fs~d~~~l~s-----------------~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs 265 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLS-----------------GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGS 265 (456)
T ss_pred cceeeeEECCCCcEEEE-----------------ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEec
Confidence 46889999999986665 223455666665 43343 33433345678999999995 777877
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
..+.|..+++.+. ...+.+. .......++++.++|++.++..
T Consensus 266 ~D~tvriWd~~~~--~~~~~l~-~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 266 DDGTVRIWDVRTG--ECVRKLK-GHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred CCCcEEEEeccCC--eEEEeee-ccCCceEEEEECCCCCEEEEcC
Confidence 7778888887542 1222332 2223356678999998666554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.8 Score=43.80 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=73.5
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
...+.++..+||.+.+| +..+|.|-.+|..+|-..+.. +......++.++..|+ .+++.+-
T Consensus 351 ~~i~~l~YSpDgq~iaT-----------------G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIAT-----------------GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred cceeeEEECCCCcEEEe-----------------ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 45788899999999887 445788889998777555433 3445667899999998 6667777
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.++|..+|++. ...++.|....|---..+++|+.|.+-++..
T Consensus 413 DGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 413 DGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 88999999863 3455566433333345688899998877654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.64 Score=47.75 Aligned_cols=156 Identities=12% Similarity=0.160 Sum_probs=85.6
Q ss_pred CCEEEEecCCeEEEEE--CCeee----EEE-------e-cCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccc
Q 018144 90 GVIYTATRDGWIKRLQ--DGTWV----NWK-------F-IDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFAN 152 (360)
Q Consensus 90 G~l~v~~~~G~I~~~~--~g~~~----~~~-------~-~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n 152 (360)
+.+.+++.++.|.++. .+... .|. . .+|.+.++... .++-.++ .++ .+......++ .+-
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl 142 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVL 142 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC----cee
Confidence 3566667888888887 33221 221 1 24444444333 4555555 444 2222222232 255
Q ss_pred cEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc---------CcceEEEecCCCEEEE
Q 018144 153 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---------FANGVALSRDEDYVVV 223 (360)
Q Consensus 153 ~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~---------~pngia~~~dg~~l~v 223 (360)
+|..+++|++..+ ...+|.|..||.+++.+....+++. .-+-++++|++..|.+
T Consensus 143 ~l~~~p~~~fLAv-----------------ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAV-----------------SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEE-----------------EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 7889999987764 3357889999988776655443321 1235789999665666
Q ss_pred EeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 224 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
.-. .+.|..|+.++-.. .+..-.+.....-..+.+++.|.+..
T Consensus 206 ~~~-d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred ecc-CCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEe
Confidence 654 46788898765321 11111111111134456677774433
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.21 Score=47.47 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=80.3
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC---cCcceEEEecCCCEEEEEeCCCCEE
Q 018144 155 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCESWKFRC 231 (360)
Q Consensus 155 ~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l---~~pngia~~~dg~~l~v~~t~~~~i 231 (360)
.++.+|++|+. ...|.|+.+|+++++........ ...++-.+..||+ +|+.+..+ .+
T Consensus 64 ~~~~dg~v~~~------------------~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~ 123 (370)
T COG1520 64 PADGDGTVYVG------------------TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KL 123 (370)
T ss_pred cEeeCCeEEEe------------------cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eE
Confidence 36788999994 23568999999988754311111 2333333444886 88888754 78
Q ss_pred EEEEe-cCCcCcceeeeccCCCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 018144 232 RKYWL-KGERKGKLETFAENLPG--APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 308 (360)
Q Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 308 (360)
++++. +|...-.. ..++ .-.+-.+-.+|.+|+.+.. +
T Consensus 124 y~ld~~~G~~~W~~-----~~~~~~~~~~~~v~~~~~v~~~s~~-----------------------------------g 163 (370)
T COG1520 124 YALDASTGTLVWSR-----NVGGSPYYASPPVVGDGTVYVGTDD-----------------------------------G 163 (370)
T ss_pred EEEECCCCcEEEEE-----ecCCCeEEecCcEEcCcEEEEecCC-----------------------------------C
Confidence 99998 44322111 1121 0112234557888888633 5
Q ss_pred EEEEECCC-CcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 309 HLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 309 ~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
.++.++.+ |+....+..+.+............++.+|+++..
T Consensus 164 ~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~ 206 (370)
T COG1520 164 HLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG 206 (370)
T ss_pred eEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC
Confidence 89999986 9888776654321112222233567888888763
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.8 Score=42.08 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEE--EEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRK--YWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~--~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
..|+.++.++|+.+.+...-......+++|||+.|.++... ...++. ++++....+....+.....+......+++
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 47999999888776654422233457899999878776632 234554 34432211222222211112223456677
Q ss_pred CCC
Q 018144 263 DGT 265 (360)
Q Consensus 263 ~G~ 265 (360)
||.
T Consensus 291 DG~ 293 (428)
T PRK01029 291 DGT 293 (428)
T ss_pred CCC
Confidence 775
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.32 Score=44.74 Aligned_cols=123 Identities=12% Similarity=0.193 Sum_probs=72.6
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC------------cCcceEEEe--
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------YFANGVALS-- 215 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l------------~~pngia~~-- 215 (360)
.+|.|..+++|++.|| .+....|+++|+++|++.....+- ..-+...+-
T Consensus 145 HiNsV~~~~~G~yLiS-----------------~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 145 HINSVDKDDDGDYLIS-----------------SRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE 207 (299)
T ss_pred EeeeeeecCCccEEEE-----------------ecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence 5789999999998886 233568999999999887654322 222233333
Q ss_pred --cCCCEEEEEeC----------CCCEEEEEEecCCcCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHH
Q 018144 216 --RDEDYVVVCES----------WKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMK 279 (360)
Q Consensus 216 --~dg~~l~v~~t----------~~~~i~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~lwva~~~~~~~~~~ 279 (360)
.++. +-+-+. +.++++.++...........+.+. ......++..=++||+.|+-..
T Consensus 208 ~~~~~~-IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~------- 279 (299)
T PF14269_consen 208 SNDDGT-ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN------- 279 (299)
T ss_pred CCCCCE-EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence 2332 333332 345677777653322222222200 1112334555567888888765
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEe
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV 324 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ 324 (360)
.+.+.+++++|+++..++
T Consensus 280 ---------------------------~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 280 ---------------------------NGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred ---------------------------CceEEEECCCCCEEEEEE
Confidence 478999999999876654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.2 Score=39.83 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred CCeEEEEeCCCcEE-EEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNANGLH-KVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~~gl~-~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
+|...++....|.+ ..| .+| .+.|.-.. ..+-.+++++|.+-.+| +.....+..
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-----~dVlsva~s~dn~qivS-----------------GSrDkTikl 131 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHT-----KDVLSVAFSTDNRQIVS-----------------GSRDKTIKL 131 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecC-----CceEEEEecCCCceeec-----------------CCCcceeee
Confidence 55555444333444 445 565 33332111 23567889999887786 334456777
Q ss_pred EcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEeCCCCEEEE-EEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 192 YDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWKFRCRK-YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 192 ~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~t~~~~i~~-~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
+|..++..-...++ -...+.+.|+|.....++...+-.+..+ +++++-+.. ..+. ...++.+-+.+.+||.+-.
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~-gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--TTFI-GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh--hccc-cccccEEEEEECCCCCEEe
Confidence 77653222122222 3457889999986435555554445544 444432221 1222 2345677788999999888
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
+-.. .+.++..|- +|+-+..+.. +..+.++.+...+.|+.
T Consensus 209 sGgk----------------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 209 SGGK----------------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLC 249 (315)
T ss_pred cCCC----------------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEe
Confidence 6333 355566663 5666665543 34577888888999999
Q ss_pred eCCCCeEEEEeCC
Q 018144 348 SLTSNFIGKVQLS 360 (360)
Q Consensus 348 s~~~~~i~~~~l~ 360 (360)
-..+..|.+++++
T Consensus 250 ~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 250 AATATSIKIWDLE 262 (315)
T ss_pred eccCCceEEEecc
Confidence 9999999988875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.1 Score=41.98 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=66.9
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
..++.+++.++|++.++ +...+.|..+|..+++......+ -...+++++++|++.++.+ +.
T Consensus 247 ~~v~~~~f~p~g~~i~S-----------------gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~ 308 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVS-----------------GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SY 308 (456)
T ss_pred CceEEEEecCCCCEEEE-----------------ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CC
Confidence 35789999999988886 33466788888887777654443 3466889999999855555 55
Q ss_pred CCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC-EEEEEe
Q 018144 228 KFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.+.|..+|.......-...+... .+..-..+.++++|. +|++..
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 77788888765432101111111 111125577788886 444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=3.3 Score=43.65 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=73.6
Q ss_pred cceEEEcCCCCEE-EEecCCeEEEEE-CC-----ee--------------eEEE--ecCC-eEEEEeCCCcEEEEc-CCC
Q 018144 81 PEDASMDKNGVIY-TATRDGWIKRLQ-DG-----TW--------------VNWK--FIDS-HLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 81 Pe~i~~d~~G~l~-v~~~~G~I~~~~-~g-----~~--------------~~~~--~~~g-~L~v~~~~~gl~~~~-~~g 135 (360)
-.+++++++|.+. ++..+|.|..++ +. .. ..+. ...+ .|..++.++-+..++ .++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 3567888888765 445788887776 21 00 0011 1122 333333333344445 444
Q ss_pred --eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceE
Q 018144 136 --VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 212 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngi 212 (360)
+..+. ... ..+..+++.+ +|.+.+| +...+.|..+|..+++.............+
T Consensus 566 ~~~~~~~-~H~----~~V~~l~~~p~~~~~L~S-----------------gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 566 QLVTEMK-EHE----KRVWSIDYSSADPTLLAS-----------------GSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred eEEEEec-CCC----CCEEEEEEcCCCCCEEEE-----------------EcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 22221 111 2467888885 6777775 233567888887766543332222344566
Q ss_pred EEe-cCCCEEEEEeCCCCEEEEEEecC
Q 018144 213 ALS-RDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 213 a~~-~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.+. +++. ++++.+..+.|..|++..
T Consensus 624 ~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 624 QFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 674 4566 445555667899998753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.1 Score=38.36 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=61.2
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
+.+++..|+|+ +.+.. +.....+..||.+...+..+. -...|.|.++|+|+++.++..+
T Consensus 62 I~~~~WsP~g~~favi~----------------g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~ 123 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIY----------------GSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL 123 (194)
T ss_pred eEEEEECcCCCEEEEEE----------------ccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence 78899999996 43431 111235777777633333332 3456889999999988888754
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.|..+|.+. .+.+..........+..+++|+..++...
T Consensus 124 ~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 124 NGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 34577777642 22222222223567888999987776543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.44 Score=45.77 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=81.8
Q ss_pred ccEEEEEcCCCCeEEEEeCCC--cCc--ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCce---e
Q 018144 186 HGQLLKYDPSSNITTLVADGF--YFA--NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---I 258 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l--~~p--ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~---i 258 (360)
...|-.+|..+-..+. ...+ ..| ..+++++|.+.. ++-...+.|.++|+..+ ++...+.|++|| |
T Consensus 486 astlsiWDLAapTpri-kaeltssapaCyALa~spDakvc-FsccsdGnI~vwDLhnq------~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRI-KAELTSSAPACYALAISPDAKVC-FSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCI 557 (705)
T ss_pred cceeeeeeccCCCcch-hhhcCCcchhhhhhhcCCcccee-eeeccCCcEEEEEcccc------eeeecccCCCCCceeE
Confidence 3456677765333322 1122 123 457789999844 44445567888998543 222356677777 5
Q ss_pred EEcCCC-CEEEEEecCchhHHHHhhcchhHHH----HHHhC---CccccccccCCCceEEEEECCCCcEEEEEeCCCCCc
Q 018144 259 NLAPDG-TFWIAIIKLDARRMKILNSSKLIKH----VLAAY---PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 330 (360)
Q Consensus 259 ~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~----~~~~~---~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~ 330 (360)
.+..+| +||.+-.....+++|+-..+....+ .|++| |. -.|+-.....+.|..+...+.....++..+
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~kyqlhlhe--- 633 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPEKYQLHLHE--- 633 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCC-ccceeeecccCcEEEEecCCccceeecccc---
Confidence 567889 7999977766667776544433222 12222 11 112211222233333333333222222211
Q ss_pred ccceeeEEEEC-CEEEEEeCCCCeEEE
Q 018144 331 MSFVTSGLQVD-NHLYVISLTSNFIGK 356 (360)
Q Consensus 331 ~~~~t~~~~~~-g~Lylgs~~~~~i~~ 356 (360)
+.+-++.+.- |+.|+.+=..|++..
T Consensus 634 -ScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 634 -SCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred -cEEEEEEecccCceeeecCchhhhhh
Confidence 2344555554 777777666666543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.8 Score=39.11 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=85.3
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC---CCeEEEEe---CCCcCcceEEEecCCCEEEEE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS---SNITTLVA---DGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---tg~~~~~~---~~l~~pngia~~~dg~~l~v~ 224 (360)
..-.+.|++|-++.+- ...+.|-.||.. .|-.+.+. .....-+.+.+++||+.++++
T Consensus 143 ~pi~AfDp~GLifA~~-----------------~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALA-----------------NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred CcceeECCCCcEEEEe-----------------cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 3456889999777642 223356666652 12222222 124456799999999988888
Q ss_pred eCCCCEEEEEEe-cCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccccc
Q 018144 225 ESWKFRCRKYWL-KGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 303 (360)
Q Consensus 225 ~t~~~~i~~~~~-~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 303 (360)
... +.++.+|. +|.....++... +....|-..++.+||.+.++...
T Consensus 206 T~~-s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~------------------------------- 252 (311)
T KOG1446|consen 206 TNA-SFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSD------------------------------- 252 (311)
T ss_pred eCC-CcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecC-------------------------------
Confidence 764 56777764 444333333332 22235666778899988887765
Q ss_pred CCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCC
Q 018144 304 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 304 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
.|.|..++ ..|+.+..+..+.+. .++.+.+...+.-+.+...+
T Consensus 253 ---dg~i~vw~~~tg~~v~~~~~~~~~---~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 253 ---DGTIHVWNLETGKKVAVLRGPNGG---PVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred ---CCcEEEEEcCCCcEeeEecCCCCC---CccccccCCceeeeeecCce
Confidence 24555555 478888888776432 34444444455444444333
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.6 Score=40.21 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=82.9
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC--c--CcceEEEecCCCEEEEEeC
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--Y--FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l--~--~pngia~~~dg~~l~v~~t 226 (360)
...++.++|. ..++-+. .-.+|.||..+.+++.+.... . .-.-..+++|++++.+...
T Consensus 261 ~~a~f~p~G~~~i~~s~r-----------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGR-----------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred ceeeecCCCceEEEeccc-----------------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc
Confidence 4457788897 5554222 235888999888776653221 1 2234678899986655544
Q ss_pred CCCEEEEEEecCC-cCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 227 WKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 227 ~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
.+.|..+..... .++. + ..+|...+++++++|. ||+...
T Consensus 324 -~G~I~lLhakT~eli~s---~--KieG~v~~~~fsSdsk~l~~~~~--------------------------------- 364 (514)
T KOG2055|consen 324 -NGHIHLLHAKTKELITS---F--KIEGVVSDFTFSSDSKELLASGG--------------------------------- 364 (514)
T ss_pred -CceEEeehhhhhhhhhe---e--eeccEEeeEEEecCCcEEEEEcC---------------------------------
Confidence 456777664321 1221 2 2455677888999986 555543
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 305 GGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
.|.|+.+|- .-.++..+.|..+. .-++++.. ++.++..+-....+-+++
T Consensus 365 --~GeV~v~nl~~~~~~~rf~D~G~v---~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 365 --TGEVYVWNLRQNSCLHRFVDDGSV---HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred --CceEEEEecCCcceEEEEeecCcc---ceeeeeecCCCceEEeccCcceEEEec
Confidence 367888874 34677777775542 23334332 444333333344444443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.96 Score=41.12 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCcceEEEecC-CCEEEEE
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALSRD-EDYVVVC 224 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~pngia~~~d-g~~l~v~ 224 (360)
.++|...+.+||+-.++-++ +|.|-.++.+|++....... -...|.+-+-|. -..++||
T Consensus 349 Syvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 46888889999987776443 57788888766554222111 112345554443 3467788
Q ss_pred eCCCCEEEEEEecCC
Q 018144 225 ESWKFRCRKYWLKGE 239 (360)
Q Consensus 225 ~t~~~~i~~~~~~g~ 239 (360)
+.+ +.|+..++.|+
T Consensus 412 Nrs-ntv~imn~qGQ 425 (508)
T KOG0275|consen 412 NRS-NTVYIMNMQGQ 425 (508)
T ss_pred cCC-CeEEEEeccce
Confidence 764 67888888775
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.24 E-value=3 Score=40.01 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCEEEEe-cCCeEEEEE-C-C--eee--EE-------------------EecCCeEEEEeCC-------CcEEEEcCCC
Q 018144 89 NGVIYTAT-RDGWIKRLQ-D-G--TWV--NW-------------------KFIDSHLIICDNA-------NGLHKVSEDG 135 (360)
Q Consensus 89 ~G~l~v~~-~~G~I~~~~-~-g--~~~--~~-------------------~~~~g~L~v~~~~-------~gl~~~~~~g 135 (360)
...||+.. ..++||.+| . . +.+ .+ ...+|+++|+..+ .|++.+|.+.
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56788888 889999999 2 2 111 11 1236778886532 3677887443
Q ss_pred eEEEee-ccCCccccccccEEEcCCCcEEEEeCCCCCCCcc------ceecccccCCccEEEEEcCCCCeEEEEeCC---
Q 018144 136 VENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE------YCLDILEGKPHGQLLKYDPSSNITTLVADG--- 205 (360)
Q Consensus 136 ~~~l~~-~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~------~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--- 205 (360)
+++... ..+.....+-+|+...+..++-||.. |+... ...++..+....+|..+|-.+.+..+..+-
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 222211 11222235678888889889888753 22211 112333344456799999988877664421
Q ss_pred CcCcceEEE--ecCCCEEEEEeCCCCEEEEEEec-CCcCcceeeecc------------CC-------CCCCceeEEcCC
Q 018144 206 FYFANGVAL--SRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAE------------NL-------PGAPDNINLAPD 263 (360)
Q Consensus 206 l~~pngia~--~~dg~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~------------~~-------~g~pd~i~~d~~ 263 (360)
...|--|.+ +|+...=||.-.....|++|..+ +.. -..+..++ .. |+++..|.++-|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 122333443 34455555555556678887663 211 11111100 11 567889999877
Q ss_pred C-CEEEEEec
Q 018144 264 G-TFWIAIIK 272 (360)
Q Consensus 264 G-~lwva~~~ 272 (360)
. .|||+++.
T Consensus 323 DrfLYvs~W~ 332 (461)
T PF05694_consen 323 DRFLYVSNWL 332 (461)
T ss_dssp S-EEEEEETT
T ss_pred CCEEEEEccc
Confidence 7 59999997
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.5 Score=42.14 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=76.7
Q ss_pred EEcCCCCEE-EEe-cCCeEEEEE-CCeeeE-----------------EEecCCeEEEEe-CCCcEEEEc-CCC-eEEEee
Q 018144 85 SMDKNGVIY-TAT-RDGWIKRLQ-DGTWVN-----------------WKFIDSHLIICD-NANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 85 ~~d~~G~l~-v~~-~~G~I~~~~-~g~~~~-----------------~~~~~g~L~v~~-~~~gl~~~~-~~g-~~~l~~ 141 (360)
++.++|++. +++ .+=+|||++ ++.+.. +...+..++++. ...-+..++ .+. .+.+..
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~ 468 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKS 468 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhc
Confidence 445677765 444 566888888 553321 112233444444 223455555 333 333322
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC-cceEEEec-CCC
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSR-DED 219 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~-pngia~~~-dg~ 219 (360)
......-..+.-|++.++|+-..+ ....|.|+.|+.++++.+.+...+.. ...+++.| +.+
T Consensus 469 ~~~~~~~~~I~~l~~SsdG~yiaa-----------------~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 469 IQSQAKCPSISRLVVSSDGNYIAA-----------------ISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred cccccCCCcceeEEEcCCCCEEEE-----------------EeccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 211122346778899999973332 11357899999998888776544433 23455664 444
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 018144 220 YVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g 238 (360)
.+.++.+ ++.++-|+++.
T Consensus 532 ~lvvats-~nQv~efdi~~ 549 (691)
T KOG2048|consen 532 RLVVATS-NNQVFEFDIEA 549 (691)
T ss_pred cEEEEec-CCeEEEEecch
Confidence 5666655 67899999853
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.6 Score=43.81 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=95.2
Q ss_pred CCcceEEEcCCC-CEEEEe---cC-CeEEEEE-CC--eeeEE--------EecCCeEEEEeCCCcEEEEc-CC----CeE
Q 018144 79 NHPEDASMDKNG-VIYTAT---RD-GWIKRLQ-DG--TWVNW--------KFIDSHLIICDNANGLHKVS-ED----GVE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~---~~-G~I~~~~-~g--~~~~~--------~~~~g~L~v~~~~~gl~~~~-~~----g~~ 137 (360)
..|..+.++++| .+|+++ .. +.+..++ +. ....+ ...+...||+ .+.+..+| .+ +..
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~ 312 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSA 312 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcc
Confidence 388889999866 567775 22 3444554 11 11111 1123346662 45688888 55 311
Q ss_pred EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe------------EEEEeC
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------TTLVAD 204 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~------------~~~~~~ 204 (360)
.+..-..+ ..|.++.+++||. +|++... .+.+-.||.++.+ +.....
T Consensus 313 v~~yIPVG---KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 313 LTRYVPVP---KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred eEEEEECC---CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 21111112 4699999999995 7776432 3446666654322 111112
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC---cCcc-eeeeccC-----CCC---CCceeEEcCCCCEEEEEec
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE---RKGK-LETFAEN-----LPG---APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~---~~~~-~~~~~~~-----~~g---~pd~i~~d~~G~lwva~~~ 272 (360)
-...|-..+++.+|+ .|++-.....|.+++++.. ..+. ...+.+. .+| .+-+-..+++|...+++..
T Consensus 373 vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 373 LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 234688899999996 9999888888999987531 0000 0111111 222 1223334889988888765
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.18 Score=45.51 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=61.5
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
.+|++.+.|...|.++- ...+.|-.+|-..-..+. +.........|.+.|.|++|.+..
T Consensus 174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 47888999998998863 234556666653222211 222334457899999999776664
Q ss_pred CCCEEEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCCCEEEEEec
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G~lwva~~~ 272 (360)
....+..||++ +++.|.... .+....+...+.|++||....
T Consensus 236 dHp~~rlYdv~-----T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVN-----TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEecc-----ceeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 45566777764 344443221 223344667899999997665
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.6 Score=38.36 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=59.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+++|++.|.|.|-++-.. ++.+-.+|.-+|+.-....--..+.-+.+++.|+..++... +
T Consensus 129 ~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~ 189 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--N 189 (362)
T ss_pred ccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--c
Confidence 4899999999999887543 23344455544544322222234555889999997777754 5
Q ss_pred EEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 018144 230 RCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|-.|.++..+ ++... .+..+-++.++..+.+.||...
T Consensus 190 ~i~i~q~d~A~-----v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 190 KIDIYQLDNAS-----VFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEEecccHh-----HhhhhhccccceeeeecCCceEEEecCC
Confidence 67777654322 22111 2223456666777778877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=4 Score=40.43 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=57.2
Q ss_pred ccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--------EEEeCCCcCcceEEEecCCCE
Q 018144 150 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--------TLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 150 ~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--------~~~~~~l~~pngia~~~dg~~ 220 (360)
.++++++++ ++++.+| +..++.|..+|..++.. ..+.........++++|++..
T Consensus 77 ~V~~v~fsP~d~~~LaS-----------------gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFT-----------------ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred CEEEEEEcCCCCCEEEE-----------------EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC
Confidence 467888887 6766664 22356666666543321 112112234567899998644
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++++....+.|..+|++... ....+. ........+.+.++|++.++..
T Consensus 140 iLaSgs~DgtVrIWDl~tg~--~~~~l~-~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGK--AVEVIK-CHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred EEEEEeCCCEEEEEECCCCe--EEEEEc-CCCCceEEEEEECCCCEEEEec
Confidence 55565556778888875422 112221 2222345677788887665543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=4.4 Score=40.81 Aligned_cols=102 Identities=8% Similarity=0.066 Sum_probs=59.4
Q ss_pred ccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE---------EEEeCCCcCcceEEEecCCC
Q 018144 150 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---------TLVADGFYFANGVALSRDED 219 (360)
Q Consensus 150 ~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~---------~~~~~~l~~pngia~~~dg~ 219 (360)
.+.++++.++ +++.+| +...+.|..+|..++.. ..+.......+.++++|++.
T Consensus 76 ~V~~lafsP~~~~lLAS-----------------gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 76 SILDLQFNPCFSEILAS-----------------GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred CEEEEEEcCCCCCEEEE-----------------EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence 4667778775 566654 22345666666543211 11111123467899999987
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.++++....+.|..+|+..... ...+ ..+.....+.++++|++.++...
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~--~~~i--~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKR--AFQI--NMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcE--EEEE--ecCCcEEEEEECCCCCEEEEEec
Confidence 6666666667788888754321 1111 12234567888999998876543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.2 Score=43.04 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=34.8
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC----CCceeEEcCCCCEEE
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG----APDNINLAPDGTFWI 268 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g----~pd~i~~d~~G~lwv 268 (360)
+..+|.|+.+..+.+-+..+.+..++.+.. ..+.+++.....+ .|.-.+++++|++..
T Consensus 272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred eccccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 445677776666666666666666666543 3455666433211 356677899998733
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.7 Score=37.90 Aligned_cols=59 Identities=25% Similarity=0.190 Sum_probs=35.9
Q ss_pred EEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCcCcceEEEecCCCEEEEEeC
Q 018144 154 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 154 l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~~pngia~~~dg~~l~v~~t 226 (360)
=++.+||. ||.|.... ....|-|-.||.. ..+.... +-.-.|.-+.+.+||+.+.+++-
T Consensus 119 Gvfs~dG~~LYATEndf-------------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDF-------------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCC-------------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 35889995 67765331 1123456667654 3333322 22346888999999998877754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=4.3 Score=39.46 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCC--CCeEEEEeCCCcCcceEEEecCCCEEEEEeCC-
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESW- 227 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~- 227 (360)
....+++||+ |+++... ...-.|+.++.+ +++.+.+..........+++|||+.++++...
T Consensus 284 ~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 3468899996 5554211 012257777653 23344443332334567899999988776543
Q ss_pred -CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 -KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 -~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.+++++.+ .+.+.. .++...+....+||+
T Consensus 349 g~~~I~v~dl~~g~---~~~Lt~-~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 349 GVRQICVYDLATGR---DYQLTT-SPENKESPSWAIDSL 383 (428)
T ss_pred CCcEEEEEECCCCC---eEEccC-CCCCccceEECCCCC
Confidence 3478899986543 233322 122345677888886
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3 Score=37.34 Aligned_cols=167 Identities=11% Similarity=0.140 Sum_probs=88.4
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-EEE----------e-cCCeEEEEe-CCCcEEEEcCCC--eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWK----------F-IDSHLIICD-NANGLHKVSEDG--VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~~~----------~-~~g~L~v~~-~~~gl~~~~~~g--~~~l~~~ 142 (360)
-++++..++|+..++. .|+.+...| .|+.. .|. + .+.+-.|.. .++-+...+--| .-.+...
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 3455666788776655 777777677 44322 111 1 123333322 223333333212 1111111
Q ss_pred cCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCE
Q 018144 143 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~ 220 (360)
+. -..++.+.+.|.. +.+|... ..++.|-.+|..+-++.... ......|-++++|||.
T Consensus 146 --~~-~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs- 205 (315)
T KOG0279|consen 146 --SH-REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS- 205 (315)
T ss_pred --CC-cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCCC-
Confidence 11 2577788888864 4444332 23556777887655554322 2345678899999997
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+..+.--.+.++-+|++..+ ....+. .......+++.++ ++|+....
T Consensus 206 lcasGgkdg~~~LwdL~~~k--~lysl~--a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGK--NLYSLE--AFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred EEecCCCCceEEEEEccCCc--eeEecc--CCCeEeeEEecCC-ceeEeecc
Confidence 76665555677888876422 122221 1112455777776 68886654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.64 E-value=3.4 Score=37.67 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=53.0
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEE------cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINL------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~------d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
.+-|-+|+++|.....+..-. .+. .|=+|++ .-.|.|.|+..+
T Consensus 221 ~G~VdvFd~~G~l~~r~as~g-~LN-aPWG~a~APa~FG~~sg~lLVGNFG----------------------------- 269 (336)
T TIGR03118 221 LGYVNVFTLNGQLLRRVASSG-RLN-APWGLAIAPESFGSLSGALLVGNFG----------------------------- 269 (336)
T ss_pred cceEEEEcCCCcEEEEeccCC-ccc-CCceeeeChhhhCCCCCCeEEeecC-----------------------------
Confidence 346777887775333221110 122 4778887 236789999988
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCCCCCcc--cceeeEEEEC-------CEEEEE
Q 018144 302 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLM--SFVTSGLQVD-------NHLYVI 347 (360)
Q Consensus 302 ~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~--~~~t~~~~~~-------g~Lylg 347 (360)
.|.|..||+ .|+.+-.+.+++|.++ ...-++.+.+ +.||++
T Consensus 270 -----DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFa 320 (336)
T TIGR03118 270 -----DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFT 320 (336)
T ss_pred -----CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEE
Confidence 589999998 4888888888888633 2234444432 357775
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.2 Score=42.78 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred EEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 119 LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
+.+++....++.++ .+| .+.+-.... ..+.++++.++++ |++ |.+ .++--...|-.||..+
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~----~lItdf~~~~nsr-~iA-----Yaf-------P~gy~tq~Iklydm~~ 478 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDFDWHPNSR-WIA-----YAF-------PEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEeccccc----ceeEEEEEcCCce-eEE-----Eec-------CcceeeeeEEEEecCC
Confidence 55555445677777 677 554422211 2355667777665 443 111 1222234567778776
Q ss_pred CeEEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 197 NITTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 197 g~~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
++.-.+.+....-..-|+++|++.||.-..
T Consensus 479 ~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 666555444445556789999999998754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=4.7 Score=38.70 Aligned_cols=108 Identities=9% Similarity=-0.043 Sum_probs=59.2
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCc--ceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
.-.++.+.+|+. +|++... +.+++-.-.+..-. +....... ......++.+..++++|++...
T Consensus 282 ~l~~v~~~~dg~-l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------ 347 (398)
T PLN00033 282 RIQNMGWRADGG-LWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------ 347 (398)
T ss_pred ceeeeeEcCCCC-EEEEeCC-ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC------------
Confidence 346778888887 5555443 45665443332110 12221111 1112455777888999998765
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCe
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNF 353 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~ 353 (360)
|.+++-...|+..+.....++. ......+.+. +++.|+.+..+--
T Consensus 348 -----------------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 348 -----------------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred -----------------------CcEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcEE
Confidence 4566655667765544322332 1234466654 5899999877653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.4 Score=37.38 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=74.7
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeE---Ec
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN---LA 261 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~---~d 261 (360)
..+.|-.+|-.||+...-..--..++.+.+++||+++-++.. ..|.-++.+ ..+..+.+ .+|.|+. +.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g--ssV~Fwdak--sf~~lKs~-----k~P~nV~SASL~ 233 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG--SSVKFWDAK--SFGLLKSY-----KMPCNVESASLH 233 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC--ceeEEeccc--cccceeec-----cCcccccccccc
Confidence 345666777777765443333456788999999986655543 446555543 22222222 1455654 56
Q ss_pred CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE
Q 018144 262 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV 340 (360)
Q Consensus 262 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~ 340 (360)
++.++||+-.. ...+++||- .|+.+..+.. |. +..+.++.+.
T Consensus 234 P~k~~fVaGge----------------------------------d~~~~kfDy~TgeEi~~~nk--gh-~gpVhcVrFS 276 (334)
T KOG0278|consen 234 PKKEFFVAGGE----------------------------------DFKVYKFDYNTGEEIGSYNK--GH-FGPVHCVRFS 276 (334)
T ss_pred CCCceEEecCc----------------------------------ceEEEEEeccCCceeeeccc--CC-CCceEEEEEC
Confidence 77789997655 467888884 4666666522 22 3456666665
Q ss_pred -CCEEEEEeCCCCeEEE
Q 018144 341 -DNHLYVISLTSNFIGK 356 (360)
Q Consensus 341 -~g~Lylgs~~~~~i~~ 356 (360)
+|.+|..+.....|..
T Consensus 277 PdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRL 293 (334)
T ss_pred CCCceeeccCCCceEEE
Confidence 4777766655555443
|
|
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.055 Score=29.31 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.3
Q ss_pred CcceEEEcCCCCEEEEec
Q 018144 80 HPEDASMDKNGVIYTATR 97 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~ 97 (360)
.-.+|+.|++|+||+|+.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 345899999999999985
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.97 Score=43.18 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=71.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+.++.+..+|.-++|-+. ...|-.+|.+||++..-...-..|+.+.+.||+..++++.....
T Consensus 260 ~Vrd~~~s~~g~~fLS~sf-----------------D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASF-----------------DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred hhhhhhccccCCeeeeeec-----------------ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCC
Confidence 3567888889987776433 45677789999998776666678999999999966888888889
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|..+|+...++- ..+. ..-+....|.+=++|.-+|++..
T Consensus 323 ki~~wDiRs~kvv--qeYd-~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 323 KIRQWDIRSGKVV--QEYD-RHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred cEEEEeccchHHH--HHHH-hhhhheeeeEEccCCceEeeecc
Confidence 9999998643311 1111 12223445666666777777655
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.2 Score=43.57 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCeee--------------EEEe-cCCeEEEEeCCCcEEEEc--CCCeEEE
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV--------------NWKF-IDSHLIICDNANGLHKVS--EDGVENF 139 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~--------------~~~~-~~g~L~v~~~~~gl~~~~--~~g~~~l 139 (360)
.-.+++++.=|+ .++|...|.|-+++ .|-.+ .++. .-+++.|+....|++.|- .++. .+
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~ 528 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LK 528 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-ee
Confidence 445677776454 56777999999998 55221 1111 134577777778888776 2221 11
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg 218 (360)
.+.--+ ..+..+.-...-.+.+. ....-.|..||..|.++..... .....+.+++++||
T Consensus 529 ~~l~l~---~~~~~iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 529 KSLRLG---SSITGIVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred eeeccC---CCcceeeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 110001 11222211111111110 1112357778876555433222 23457889999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
++| ++......|..+|+-.. .-...+. .+..+.++.+.++|.+....
T Consensus 589 rWl-isasmD~tIr~wDlpt~--~lID~~~--vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 589 RWL-ISASMDSTIRTWDLPTG--TLIDGLL--VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred cEE-EEeecCCcEEEEeccCc--ceeeeEe--cCCcceeeEECCCCCEEEEE
Confidence 855 44445567888887422 1122222 11124455555555544433
|
|
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.058 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.2
Q ss_pred CceeEEcCCCCEEEEEe
Q 018144 255 PDNINLAPDGTFWIAII 271 (360)
Q Consensus 255 pd~i~~d~~G~lwva~~ 271 (360)
...|..|++|+||+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34588899999999985
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.55 Score=41.06 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=56.9
Q ss_pred chhcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE---CCe-------ee------------EEEecCCeEEE
Q 018144 64 ATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WV------------NWKFIDSHLII 121 (360)
Q Consensus 64 ~~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~---~g~-------~~------------~~~~~~g~L~v 121 (360)
++.+...++|+.+....=..|++|+.|.||.-+.+|.|+|.. ++. .+ .+...+|.||+
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~ 145 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYA 145 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEE
T ss_pred ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEE
Confidence 344466688888733333489999999999999999999886 221 11 23345667777
Q ss_pred EeCCCcEEEEc-CCC--eEEE--eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 122 CDNANGLHKVS-EDG--VENF--LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 122 ~~~~~gl~~~~-~~g--~~~l--~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
-+.+..+++.. +++ -+.+ ...+.+........|...++|+||..+ .+|.|+|+.+.+
T Consensus 146 i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~~~p~ 207 (229)
T PF14517_consen 146 ITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRGRPPQ 207 (229)
T ss_dssp EETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEES---
T ss_pred EcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEEeccCCcc
Confidence 66444366553 221 1100 011111122335567788999999864 257899887654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.8 Score=36.75 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=90.3
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE--CCee-eEEE-----------ecCCeEEEEeC-CCcEEEEc-CCC-eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWK-----------FIDSHLIICDN-ANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~-~~~~-----------~~~g~L~v~~~-~~gl~~~~-~~g-~~~l~~~ 142 (360)
-.++++.++|+..+++ .+..|..+| .|.. ..+. ..+.+..|+.. ...-+.++ .++ -+.|+..
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC
Confidence 3578899999877665 677777777 5532 1121 12333343332 22222233 233 3334333
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCE
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDY 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~ 220 (360)
.++.....+....+|+.|+..++ ++..|.+..||..|-+...-. +.......|-++..|++
T Consensus 148 ~d~dln~sas~~~fdr~g~yIit-----------------GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIIT-----------------GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF 210 (405)
T ss_pred CccccccccccccccCCCCEEEE-----------------ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence 33322223444467888865554 566789999998765443211 11234456778888874
Q ss_pred EEEEeCCCCEEEEEEecC----CcCcceee---eccCCCCC-CceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWKFRCRKYWLKG----ERKGKLET---FAENLPGA-PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g----~~~~~~~~---~~~~~~g~-pd~i~~d~~G~lwva~~~ 272 (360)
+ +.++...-|..|+.+. ++.+..+. +-+..... =.+++++.+|.+-+|...
T Consensus 211 l-iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 211 L-IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred E-EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 4 5555544555676531 11222221 11101111 135788999977776654
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.2 Score=36.34 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=75.3
Q ss_pred hcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE---CC-----------------eee-EEEecCCeEEEEeC
Q 018144 66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DG-----------------TWV-NWKFIDSHLIICDN 124 (360)
Q Consensus 66 ~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~---~g-----------------~~~-~~~~~~g~L~v~~~ 124 (360)
-+..+.+|+.+ ..+=..|+..++|.||.... +.+|+.. ++ .++ .+....|-||.-+.
T Consensus 22 ~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 22 WSDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred ccchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc
Confidence 35667788775 56677888889999998774 4788882 11 011 12345666776565
Q ss_pred CCcEEEEc--CCC-eEEE---eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE-cCCCC
Q 018144 125 ANGLHKVS--EDG-VENF---LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSN 197 (360)
Q Consensus 125 ~~gl~~~~--~~g-~~~l---~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~tg 197 (360)
...+++.. .++ .... ...+.+..-+....|..+++|.||.-+ +.|++++. .|+.+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCCC
Confidence 44556655 222 1111 111111122345677889999999854 35678877 44322
Q ss_pred e-------EEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 198 I-------TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 198 ~-------~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
. ..+...+-....-|..++++. ||..++ ++.|+|+..
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~ 205 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRP 205 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES-
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCC
Confidence 1 111123334467788889986 777754 578888754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=3.6 Score=38.18 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=82.7
Q ss_pred EEEEEcCCCCeEEEEeCC-CcCcceE-EEecCCCEEEEE---eCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 188 QLLKYDPSSNITTLVADG-FYFANGV-ALSRDEDYVVVC---ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~-l~~pngi-a~~~dg~~l~v~---~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
.+|.||-++-++-...+. -..|+|+ |+++....-|++ .+..+.|..||... ......+. ...+-.-.+++++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAalafs~ 183 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALAFSP 183 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEEECC
Confidence 588888765544322222 2566765 455544322322 44567788888643 22222221 2334456788999
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCCcEEEEEeCCCCCcccceeeEEEE
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNLVDPTGQLMSFVTSGLQV 340 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g~~~~~~~~~~g~~~~~~t~~~~~ 340 (360)
+|++...... .|.|+|+- ++|+.+..|.. |.....+.++.++
T Consensus 184 ~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 184 DGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS 227 (391)
T ss_pred CCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence 9987765544 46777763 68988877764 5545667888887
Q ss_pred C-CEEEEEeCCCCeEEEEeCC
Q 018144 341 D-NHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 341 ~-g~Lylgs~~~~~i~~~~l~ 360 (360)
. ..+...+-....|-+++|+
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCeEEEecCCCeEEEEEec
Confidence 4 6666667788888888875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=8.7 Score=38.08 Aligned_cols=71 Identities=7% Similarity=-0.092 Sum_probs=47.1
Q ss_pred ccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
.+..+++.+++ ++.++ +..++.|..+|..+++......+ ....+.+++++||+ ++++...
T Consensus 127 ~V~~l~f~P~~~~iLaS-----------------gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~ 188 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLAS-----------------AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSK 188 (493)
T ss_pred cEEEEEeCcCCCCEEEE-----------------EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecC
Confidence 45677888765 55554 22356788888877765443332 33467899999998 4455555
Q ss_pred CCEEEEEEecC
Q 018144 228 KFRCRKYWLKG 238 (360)
Q Consensus 228 ~~~i~~~~~~g 238 (360)
.+.|..+|+..
T Consensus 189 Dg~IrIwD~rs 199 (493)
T PTZ00421 189 DKKLNIIDPRD 199 (493)
T ss_pred CCEEEEEECCC
Confidence 67888888753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.2 Score=43.12 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
..+.+|+..|.. .-.+.+...+.....+.++|+.. ...+.+....+..+|... -...++|. ...+-..-+++.+.
T Consensus 514 D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~--G~~VRiF~-GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 514 DQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST--GNSVRIFT-GHKGPVTALAFSPC 588 (707)
T ss_pred CceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCC--CcEEEEec-CCCCceEEEEEcCC
Confidence 345578777753 44445555677778899999986 333444444555555432 23456664 23344566788888
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-C
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-D 341 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~ 341 (360)
|...++... .+.|...| +.|+.+..+-...+ .+.++.+. +
T Consensus 589 Gr~LaSg~e----------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~d 630 (707)
T KOG0263|consen 589 GRYLASGDE----------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRD 630 (707)
T ss_pred CceEeeccc----------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecC
Confidence 854443322 23455555 35555544433332 35556554 5
Q ss_pred CEEEEEeCCCCeEEEEeC
Q 018144 342 NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 342 g~Lylgs~~~~~i~~~~l 359 (360)
|.+.+.+-.++.|...++
T Consensus 631 g~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDL 648 (707)
T ss_pred CCEEEecCCCCeEEEEEc
Confidence 666666666666666654
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.15 E-value=5.2 Score=34.51 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCCCCce-eE--EcC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDN-IN--LAP 262 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~-i~--~d~ 262 (360)
|--+.||++|-+ .+..--..-.|-.+..|++.|+.++- +..+..-|++.- ...+..+-. .|.|-. +. .=-
T Consensus 111 gvaf~~d~~t~~--~lg~~~y~GeGWgLt~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~---~g~pv~~LNELE~V 184 (262)
T COG3823 111 GVAFKYDADTLE--ELGRFSYEGEGWGLTSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTD---DGVPVSKLNELEWV 184 (262)
T ss_pred ceeEEEChHHhh--hhcccccCCcceeeecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEE---CCeecccccceeee
Confidence 455788876432 22222223456667777776776664 455655554321 112222221 122211 11 112
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeC--------CCCCcccc
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVD--------PTGQLMSF 333 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~--------~~g~~~~~ 333 (360)
+|.+|.-.+. ...|.+++|+ |+++..+.- +++...+.
T Consensus 185 dG~lyANVw~----------------------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 185 DGELYANVWQ----------------------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred ccEEEEeeee----------------------------------ecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 4666665554 2478999985 888776642 22222233
Q ss_pred eeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 334 VTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 334 ~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
..+++.. .+++|+.+..=+.+-.+++
T Consensus 231 lNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 231 LNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccceeecCcCCeEEEecCcCceeEEEEe
Confidence 3455554 3799999887776666554
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.14 E-value=7.9 Score=36.64 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
..+.++++.+||.+..|-.. ...|+|+ |..||+...+..+ .....+|+|+|+|- .+.+.+.
T Consensus 304 ~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~ 365 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSS 365 (459)
T ss_pred cccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECCCce-EEeecCC
Confidence 35789999999999886332 1234554 5556766655544 45668999999994 6666666
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+.++|+..... ..... ........+.+++++..++.+..
T Consensus 366 Dnt~kVWDLR~r~~--ly~ip-AH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSE--LYTIP-AHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred CCcEEEeeeccccc--ceecc-cccchhhheEecccCCeEEEEcc
Confidence 67676677643221 11111 12224567788874444444433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.4 Score=40.57 Aligned_cols=132 Identities=12% Similarity=0.179 Sum_probs=74.1
Q ss_pred eEEE-EeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 118 HLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 118 ~L~v-~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
++++ +..+..|..+| ++| ++.+ +.-+..+++|.+-++|.=+|+.+- .+.+..++
T Consensus 313 n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe 370 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWE 370 (503)
T ss_pred cEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEE
Confidence 4554 44445677777 665 2222 112346788888888877776432 23344444
Q ss_pred CCCCeEEEEe-C-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeecc-CCCCCCceeEEcCCCCEEEE
Q 018144 194 PSSNITTLVA-D-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 194 ~~tg~~~~~~-~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva 269 (360)
-.......+. . ....--.+++.|.++ ++.+.+..++|..|..... +....+.|.. ..+|++-.+.+.+||.+.++
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 3322221111 1 112223577889887 8889998899998876432 2222233322 24677778888888876665
Q ss_pred Eec
Q 018144 270 IIK 272 (360)
Q Consensus 270 ~~~ 272 (360)
-..
T Consensus 450 Gds 452 (503)
T KOG0282|consen 450 GDS 452 (503)
T ss_pred ecC
Confidence 443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.44 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEe
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALS 215 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~ 215 (360)
.+.|..+|+.+++..........|.+++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 468999999877765544445678888764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=3.5 Score=40.54 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=81.7
Q ss_pred ceEEEcC-CCCEEEEecCCeEEEEE--CCeee-EEEecCCeEEEEeCC--CcEEEEc-CCC-eEEEe-------------
Q 018144 82 EDASMDK-NGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSHLIICDNA--NGLHKVS-EDG-VENFL------------- 140 (360)
Q Consensus 82 e~i~~d~-~G~l~v~~~~G~I~~~~--~g~~~-~~~~~~g~L~v~~~~--~gl~~~~-~~g-~~~l~------------- 140 (360)
.+|+.+. +-.||++.....|||++ .|++- .+....+.||+++.. +||+... .+| ++.+-
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 3455553 55799888777899999 67543 344444555555533 3555444 344 33221
Q ss_pred eccC---C-ccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCc-ceEE
Q 018144 141 SYVN---G-SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA-NGVA 213 (360)
Q Consensus 141 ~~~~---~-~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~p-ngia 213 (360)
..++ + .....+..+.+..+| ++=| ++..|.++.||..+.+.-...+. ...| .-+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 1111 1 122345556666555 3444 56678999999876554333221 2222 2233
Q ss_pred Eec--CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 214 LSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 214 ~~~--dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+-+ +++.++-++. ++.++|-.. .+..-...+....+.|...+-..|-+++|.-.
T Consensus 279 ~~~~~~q~~v~S~Dk---~~~kiWd~~--~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDK---RILKIWDEC--TGKPMASIEPTSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ccccCCCceEEecch---HHhhhcccc--cCCceeeccccCCcCceeeecCCceEEEecCC
Confidence 321 2334544433 466655321 11111222223333444444445666666654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=7.1 Score=35.28 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=64.4
Q ss_pred cccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
+..|.+.| +++.||+- .....-..+|...+...+.. ..-...|.+.+.|+|. -+++.+..
T Consensus 189 V~slsl~p~~~ntFvSg-----------------~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD 250 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSG-----------------GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDD 250 (343)
T ss_pred EEEEecCCCCCCeEEec-----------------ccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCC
Confidence 45667777 88999973 23444455665555544433 3345689999999996 77777777
Q ss_pred CEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCEEEEEec
Q 018144 229 FRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.....||+... .+..+|. +........+++...|+|..+.+.
T Consensus 251 ~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 251 ATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 77788887532 2233332 112223566889999998777554
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.47 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-EEeCCCcCcceEEEec
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSR 216 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-~~~~~l~~pngia~~~ 216 (360)
|+||.||.+. .-.+.+.+.+....+ .+..++..|+||++++
T Consensus 1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 5789999762 126777766644433 3556799999999874
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=4.6 Score=35.85 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=46.4
Q ss_pred EEEEEcCCCCeEEEEeC-------CCcCcceEEEecCC---C-EEEEEeCCCCEEEEEEecCC---cCcce--eeeccCC
Q 018144 188 QLLKYDPSSNITTLVAD-------GFYFANGVALSRDE---D-YVVVCESWKFRCRKYWLKGE---RKGKL--ETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~-------~l~~pngia~~~dg---~-~l~v~~t~~~~i~~~~~~g~---~~~~~--~~~~~~~ 251 (360)
.+|.+||+++.++.+.+ +...+.|+++..+. . .++|+.. .+.+..|.+-.+ +.+.. +.|. .
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk--~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFK--I 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeee--c
Confidence 46888888777766543 35678899986543 3 3333333 345666665211 22221 2221 2
Q ss_pred CCCCceeEE-cCCCCEEEEEecC
Q 018144 252 PGAPDNINL-APDGTFWIAIIKL 273 (360)
Q Consensus 252 ~g~pd~i~~-d~~G~lwva~~~~ 273 (360)
+.--.|+.. |+-|.|||+....
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred CCcccceeeccccceEEEeeccc
Confidence 223445665 5788999997663
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.54 E-value=9.7 Score=36.09 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCC-cCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF-YFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l-~~pngia~~~dg~~l~v~~t~~ 228 (360)
+-.|...||.+-.+|-+. ..-+...|.+||...... .++ ..+...++.|||.. +|+.+..
T Consensus 272 V~yi~wSPDdryLlaCg~-----------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~d 333 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGF-----------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPD 333 (519)
T ss_pred eEEEEECCCCCeEEecCc-----------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCC
Confidence 445677888876665432 234677788777664432 232 34567889999975 4555556
Q ss_pred CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 229 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
..+...+.+|...+..+-.. .| ....+++..||..-+.
T Consensus 334 r~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYDGKYVLL 371 (519)
T ss_pred CcEEEecCCcchhhcccccc--cc-eeEEEEEcCCCcEEEE
Confidence 78999999987655444322 12 2457888888864433
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.55 Score=29.26 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=29.7
Q ss_pred EEEEEeCCCC-EEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 220 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 220 ~l~v~~t~~~-~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
.+|+++.... .|.+-+++|.. .+++....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999998843 3333333344799999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.7 Score=36.50 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
.+..+|-..++.......-..-+-+.++|+|++..+.+- ...|.-++....+....+ ..+.....++...+++++
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-DDRITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLF 162 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-cccEEEEEecccceeehh----cccceeeeeeecCCCCEE
Confidence 455566554554443333334456889999987766664 467887776432211111 122235567777777788
Q ss_pred EEEec-CchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 018144 268 IAIIK-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR 321 (360)
Q Consensus 268 va~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 321 (360)
+.+.+ +... +..||.|+.+.. +.+....---+.|+|+|+.+.
T Consensus 163 flt~GlG~v~----ILsypsLkpv~s--------i~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 163 FLTNGLGCVE----ILSYPSLKPVQS--------IKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred EEecCCceEE----EEeccccccccc--------cccCCcceEEEEECCCCceEe
Confidence 77766 2222 344555554422 111222223478899998765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=7.6 Score=34.35 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=63.5
Q ss_pred ccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeCCCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
-+|.++..++ ++|+++|.+ |.|..+|........ +.+.......+++.+||+.+ ++-.
T Consensus 126 pVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml-~a~n 186 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML-AAAN 186 (311)
T ss_pred CcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE-EEec
Confidence 4688888875 478887644 667788875443322 33445667889999999855 5555
Q ss_pred CCCEEEEEEecCC-cCcceeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 018144 227 WKFRCRKYWLKGE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 227 ~~~~i~~~~~~g~-~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.++++++++-+. .....+.... ...++.--..+.+++.+.++...
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 5778888887542 2233332211 12234444667888776666544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=3.4 Score=38.39 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
..+..|...+||.+|+|-+. ....+..+|++++....+. .++..-.-+.++|||+.++.+..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~- 258 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC- 258 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-
Confidence 45667777889999997442 2346888999988876665 45555556789999996665554
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
.++++++...+. -+.+.+. ..+|....-+.+++|. |.++..+
T Consensus 259 -davfrlw~e~q~-wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 259 -DAVFRLWQENQS-WTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred -cceeeeehhccc-ceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 358888843321 2222332 2445566677788885 4444443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.97 E-value=13 Score=36.28 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=60.9
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--E----eCCCcCc
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--V----ADGFYFA 209 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~----~~~l~~p 209 (360)
.+++.+...+..--.+..-++++||.++.+ +..+|.|-.++..+..+.. . .......
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa-----------------gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAA-----------------GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhh-----------------cccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 555544333321123455577889887442 3345666666642111111 1 1122345
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCC-CceeEEcCCCCEEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~-pd~i~~d~~G~lwva~~~ 272 (360)
..|+|+.||+.| .+-...+.+..+++...+ .-..++......+ -.+.++.++..|.++-..
T Consensus 368 tsi~FS~dg~~L-lSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 368 TSISFSYDGNYL-LSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eEEEeccccchh-hhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 789999999844 555555667777764321 1111221111112 246788888887775443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=10 Score=37.48 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=58.2
Q ss_pred EEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 119 LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
||++..+.-+|+++ +.| +..+..... ..|.+.+.+-..|..+ ++..|.|-.+||.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~-----------------Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLAC-----------------GTEDGVVEFWDPR 205 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccc-----cceeeeecCccceEEe-----------------cccCceEEEecch
Confidence 88888888899999 788 455543321 3455555555444443 4445666677765
Q ss_pred CCeEEE-E-----------eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 196 SNITTL-V-----------ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 196 tg~~~~-~-----------~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+.+.-. + ......+..+.++.|| .-+.+.+..+.++.||+..
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence 432211 1 0112335678888777 3445566678899999854
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.74 E-value=13 Score=35.73 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=46.7
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCc--ceEEEecCCCEEEEEeCCC----------CEEEEEEecCCcCcceeeeccCCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK----------FRCRKYWLKGERKGKLETFAENLPG 253 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~p--ngia~~~dg~~l~v~~t~~----------~~i~~~~~~g~~~~~~~~~~~~~~g 253 (360)
...|+.+|.++|+... +.+..+ .++++.+|++.+|.+.... .+|+++.+.........+|......
T Consensus 149 ~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred eEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 3468889998886533 222222 2399999988887776433 3467777643322223455433222
Q ss_pred C-CceeEEcCCCCE-EEEEec
Q 018144 254 A-PDNINLAPDGTF-WIAIIK 272 (360)
Q Consensus 254 ~-pd~i~~d~~G~l-wva~~~ 272 (360)
. --++..+.+|++ .|....
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEES
T ss_pred cEEEEEEecCcccEEEEEEEc
Confidence 2 235667888864 444433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.74 E-value=11 Score=35.09 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=65.7
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..-+..+|||...|+ .+.+ +++++=..+.. .+....+-....+.+++|+|++|+++-.+.
T Consensus 241 ~slLkwSPdgd~lfa-----------------At~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFA-----------------ATCD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred eeeEEEcCCCCEEEE-----------------eccc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 445678899987775 2333 34444322122 222333334677889999999999999988
Q ss_pred CEEEEEEecCCcC--------cceeeeccC-----------CCCCCceeEEcCCCCEEEEEecCch
Q 018144 229 FRCRKYWLKGERK--------GKLETFAEN-----------LPGAPDNINLAPDGTFWIAIIKLDA 275 (360)
Q Consensus 229 ~~i~~~~~~g~~~--------~~~~~~~~~-----------~~g~pd~i~~d~~G~lwva~~~~~~ 275 (360)
.+|++...+++.. ......++. .-|-+..++.|+.|...+......+
T Consensus 303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 9999887664311 011122221 1234677999999987777776543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.71 E-value=19 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE--------------------------------------ecCCeEEEEeCCCcE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK--------------------------------------FIDSHLIICDNANGL 128 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~--------------------------------------~~~g~L~v~~~~~gl 128 (360)
+|.||+++.++.|+.+| +|+.. |. ..+++||+++.+..+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 78999999999999999 67421 11 023478888888889
Q ss_pred EEEc-CCC
Q 018144 129 HKVS-EDG 135 (360)
Q Consensus 129 ~~~~-~~g 135 (360)
+.+| ++|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 778
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=13 Score=35.74 Aligned_cols=206 Identities=12% Similarity=0.146 Sum_probs=108.1
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE-CCe--------------eeEEEecCCeEEEEeCCCcEEEEc--CCCeEEEee
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT--------------WVNWKFIDSHLIICDNANGLHKVS--EDGVENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~--------------~~~~~~~~g~L~v~~~~~gl~~~~--~~g~~~l~~ 141 (360)
.-.++.+-+||.|..+. ..|.|-.+| +.+ ...|...++.+++...+.++.++. .++.... +
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~-~ 148 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA-E 148 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE-E
Confidence 44566677789888655 778777777 331 122333567777776677777766 3442121 1
Q ss_pred ccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEEecCC
Q 018144 142 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDE 218 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~~~dg 218 (360)
..+. -.++...++.+ +++|.+| +..+|.|-.||..+...... -.+. -...+.+-|.|
T Consensus 149 -l~~h-tDYVR~g~~~~~~~hivvt-----------------GsYDg~vrl~DtR~~~~~v~elnhg~-pVe~vl~lpsg 208 (487)
T KOG0310|consen 149 -LSGH-TDYVRCGDISPANDHIVVT-----------------GSYDGKVRLWDTRSLTSRVVELNHGC-PVESVLALPSG 208 (487)
T ss_pred -ecCC-cceeEeeccccCCCeEEEe-----------------cCCCceEEEEEeccCCceeEEecCCC-ceeeEEEcCCC
Confidence 1111 02344555544 4567786 33456666677643322221 1222 22345555666
Q ss_pred CEEEEEeCCCCEEEEEEec-CCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 219 DYVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
. ++++. +++.+..+|+- |.+.-. .. .+...-...+++..++. |+-+...
T Consensus 209 s-~iasA-gGn~vkVWDl~~G~qll~--~~-~~H~KtVTcL~l~s~~~rLlS~sLD------------------------ 259 (487)
T KOG0310|consen 209 S-LIASA-GGNSVKVWDLTTGGQLLT--SM-FNHNKTVTCLRLASDSTRLLSGSLD------------------------ 259 (487)
T ss_pred C-EEEEc-CCCeEEEEEecCCceehh--hh-hcccceEEEEEeecCCceEeecccc------------------------
Confidence 5 54444 45678888875 322110 00 11222356777777775 4444333
Q ss_pred cccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCC
Q 018144 297 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLT 350 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~ 350 (360)
+.|-.|+ .+-+++..+.-|.+. .+..+. ++..+++|--+
T Consensus 260 -----------~~VKVfd~t~~Kvv~s~~~~~pv----Lsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 260 -----------RHVKVFDTTNYKVVHSWKYPGPV----LSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred -----------cceEEEEccceEEEEeeecccce----eeEEecCCCceEEEeccc
Confidence 4566666 466777777665542 222233 34667777543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=7.3 Score=39.17 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=45.5
Q ss_pred ccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEe
Q 018144 148 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 148 ~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~ 225 (360)
...++++++.|||. +.++ ...+++.||++.|..-....+ -...+.+|++.||+ .+.+.
T Consensus 12 ~hci~d~afkPDGsqL~lA-------------------Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILA-------------------AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEe-------------------cCCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence 35789999999995 5553 245899999988765443333 33578999999997 55554
Q ss_pred CCCCEEEEEE
Q 018144 226 SWKFRCRKYW 235 (360)
Q Consensus 226 t~~~~i~~~~ 235 (360)
.. .+...+|
T Consensus 72 ~a-DK~VI~W 80 (1081)
T KOG1538|consen 72 SA-DKSVIIW 80 (1081)
T ss_pred CC-ceeEEEe
Confidence 43 3444444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=91.63 E-value=4.5 Score=42.14 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCCCCcceEEEc-CCCCEEEEe--cCCeEEEEE--CCeee-EEEe------------------cCCeEEEEeCCCcEEEE
Q 018144 76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGTWV-NWKF------------------IDSHLIICDNANGLHKV 131 (360)
Q Consensus 76 ~~~~~Pe~i~~d-~~G~l~v~~--~~G~I~~~~--~g~~~-~~~~------------------~~g~L~v~~~~~gl~~~ 131 (360)
|....|..+... .+-++.+-+ ....||++| .|++. .|.. ....-++|-..++++++
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence 334556665444 355666665 346789998 67542 2221 12346888888999999
Q ss_pred c-C-CCeEEEeecc-CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC
Q 018144 132 S-E-DGVENFLSYV-NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 208 (360)
Q Consensus 132 ~-~-~g~~~l~~~~-~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~ 208 (360)
| + .|-+.+.... .-...+....++-+.+|+|-|+ ...|.|-.||.-+.+.+....++..
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavg------------------s~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVG------------------SNKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCceEEEE------------------eCCCcEEeecccchhhhhcCCCCCC
Confidence 9 3 3411111110 0011123456788899999884 3467777788653344444456665
Q ss_pred c-ceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 209 A-NGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 209 p-ngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
| -||.++.||+ ++++.+.. -|..++.
T Consensus 620 pI~~iDvt~DGk-wilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGK-WILATCKT-YLLLIDT 646 (794)
T ss_pred CeeEEEecCCCc-EEEEeecc-eEEEEEE
Confidence 5 5899999998 55555544 4555553
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.24 E-value=8.6 Score=35.82 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=16.0
Q ss_pred CCCCEEEEecCCeEEEEE-CC
Q 018144 88 KNGVIYTATRDGWIKRLQ-DG 107 (360)
Q Consensus 88 ~~G~l~v~~~~G~I~~~~-~g 107 (360)
.++.+|+.+.+|.|+.++ .|
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETT
T ss_pred CCCeEEEEecCCEEEEEeccC
Confidence 356788888999999998 55
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.13 E-value=14 Score=34.85 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCEEEEEeCC----CCEEEEEEec-CCcCcceeeeccCCCCCCc-ee
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-NI 258 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~l~v~~t~----~~~i~~~~~~-g~~~~~~~~~~~~~~g~pd-~i 258 (360)
...|+.++.+++..+.+..+-... .-+.++++++.+|+..+. ...|++++++ +. ..+.+.. .. ... .+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~-~~-~~~~~~ 333 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC-ED-GDHYSA 333 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST-TS-STTEEE
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC-CC-CCceEE
Confidence 457999999877766665554444 346789999889988775 3479999887 42 3333322 22 233 78
Q ss_pred EEcCCCCEEEEEec
Q 018144 259 NLAPDGTFWIAIIK 272 (360)
Q Consensus 259 ~~d~~G~lwva~~~ 272 (360)
.++++|+.++-...
T Consensus 334 ~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 334 SFSPDGKYYVDTYS 347 (353)
T ss_dssp EE-TTSSEEEEEEE
T ss_pred EECCCCCEEEEEEc
Confidence 89999998886654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=91.08 E-value=9 Score=32.72 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=47.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
..|.|..+|+|++.++-.. +...|.|..+|.++.+.... ........++++|||+++..+.+.
T Consensus 102 ~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred CceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccc
Confidence 4678999999987664221 12246788899874443222 223356789999999988777653
Q ss_pred ---CCEEEEEEecCC
Q 018144 228 ---KFRCRKYWLKGE 239 (360)
Q Consensus 228 ---~~~i~~~~~~g~ 239 (360)
.+.+..++..|.
T Consensus 167 ~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 167 LRVDNGFKIWSFQGR 181 (194)
T ss_pred eeccccEEEEEecCe
Confidence 234444555443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=19 Score=36.28 Aligned_cols=71 Identities=1% Similarity=-0.207 Sum_probs=45.9
Q ss_pred ccccEEEcCCCcEE-EEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~-vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++.+++.+++... +| +...+.|..+|..+++.............++++++|+. +++....
T Consensus 127 ~V~sVaf~P~g~~iLaS-----------------gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l-Lat~s~D 188 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCS-----------------SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL-LSGTCVG 188 (568)
T ss_pred cEEEEEECCCCCeEEEE-----------------EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE-EEEEecC
Confidence 46778888888544 33 12356788888876654332222234678999999984 4555556
Q ss_pred CEEEEEEecC
Q 018144 229 FRCRKYWLKG 238 (360)
Q Consensus 229 ~~i~~~~~~g 238 (360)
+.|..||+..
T Consensus 189 ~~IrIwD~Rs 198 (568)
T PTZ00420 189 KHMHIIDPRK 198 (568)
T ss_pred CEEEEEECCC
Confidence 6788888754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=6.8 Score=35.93 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCeEEEEe------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeecc---CCCCCC
Q 018144 187 GQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAE---NLPGAP 255 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~~---~~~g~p 255 (360)
.-|..+|.-||+.+.-. +.+..+..++|++||..||... +..|..|++..+ .-..+.++.. .+.|+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 34667777777765421 2345678999999999777654 457888887532 1111222211 123445
Q ss_pred ceeEEcCC--CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccc
Q 018144 256 DNINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 333 (360)
Q Consensus 256 d~i~~d~~--G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~ 333 (360)
..+++.+. +.+=++.... .-+|++- .++..+..+....| .
T Consensus 211 sc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~~-~~~~pl~llggh~g----G 252 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYND-DGRRPLQLLGGHGG----G 252 (406)
T ss_pred eeeeccCCCCcceeeecccc---------------------------------eeeeEec-CCCCceeeecccCC----C
Confidence 55666543 2455555542 1234332 35567777765444 4
Q ss_pred eeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 334 VTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 334 ~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
+|.+... +++||.|.-..+.|...++
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEee
Confidence 6666554 5889999999999988775
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=21 Score=36.23 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=80.6
Q ss_pred EEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEE
Q 018144 154 VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232 (360)
Q Consensus 154 l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~ 232 (360)
-.+++|| .||+.....+ ...+......+.++.++.+.++... ..-..+..+.+++||+.+.+... ++|+
T Consensus 402 PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~ 471 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVY 471 (591)
T ss_pred ceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEE
Confidence 3678885 6888642210 0001111234567666655555433 11224778999999998877653 4676
Q ss_pred E---EEecCCc--CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 233 K---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 233 ~---~~~~g~~--~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
. ...++.. .+....+...+...+..+..-.++.|.|+.... .
T Consensus 472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~---------------------------------~ 518 (591)
T PRK13616 472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP---------------------------------E 518 (591)
T ss_pred EEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC---------------------------------C
Confidence 5 3322221 111111221222234567777788888775432 2
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
..|++++-+|.....+ +.+.....+..+.-..+.||+++-.
T Consensus 519 ~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~ 559 (591)
T PRK13616 519 HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDAR 559 (591)
T ss_pred CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCC
Confidence 3577888888765432 2333334455555555678887543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=21 Score=35.90 Aligned_cols=171 Identities=11% Similarity=0.017 Sum_probs=88.1
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeE-EEecCCeEEEEe-----------CCCcEEE-Ec-CCC-eEEEe
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSHLIICD-----------NANGLHK-VS-EDG-VENFL 140 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~-~~~~~g~L~v~~-----------~~~gl~~-~~-~~g-~~~l~ 140 (360)
=..=|++++.++|+|+....+|.|..+| +++... ....+|.||-.. .+.|++. ++ ..+ ++.-
T Consensus 69 drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~- 147 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK- 147 (691)
T ss_pred CCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE-
Confidence 3577899999899999888999999998 665432 222244444222 1233322 22 233 2211
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE----eCCCc-----Ccce
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFY-----FANG 211 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~----~~~l~-----~png 211 (360)
..+. ..-..+-.+..+++|.=.++ +..+|.|-.+|..+++.-.+ .+.+. ...+
T Consensus 148 r~l~-rq~sRvLslsw~~~~~~i~~-----------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 148 RSLM-RQKSRVLSLSWNPTGTKIAG-----------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred eecc-cccceEEEEEecCCccEEEe-----------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 1111 11124556777888863332 44456677777765543221 11222 2456
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
+.+-.|+. +.-.| +.+.|..+|.+.... .+.+. .+.+-.-.++++.++ .+.++...
T Consensus 210 v~~Lrd~t-I~sgD-S~G~V~FWd~~~gTL--iqS~~-~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 210 VLFLRDST-IASGD-SAGTVTFWDSIFGTL--IQSHS-CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEeecCc-EEEec-CCceEEEEcccCcch--hhhhh-hhhcceeEEEEcCCCCeEEEccCC
Confidence 66666763 44444 456777666532211 11111 122234457777665 56666655
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=17 Score=34.71 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=37.5
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-...+++|||- ++.+.+..+-|..||++.+. ....|. ...+-...|.+.++| +|+++..
T Consensus 350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~Fp-ght~~vk~i~FsENG-Y~Lat~a 408 (506)
T KOG0289|consen 350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAKFP-GHTGPVKAISFSENG-YWLATAA 408 (506)
T ss_pred eEEeeEcCCce-EEeccCCCceEEEEEcCCcc--ccccCC-CCCCceeEEEeccCc-eEEEEEe
Confidence 35678999994 88888877766777775432 222232 123335568889888 7776654
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.81 Score=27.96 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CC
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG 107 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g 107 (360)
..+..|.++++|. ++.||.++ ..+.|.+.+ +|
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3578999999997 57899988 567888887 65
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=21 Score=36.51 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred cccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
.++..|++.|- .+.+++ |.-+|.+-.++-...++..+.+--.....+++.|||+..+|...
T Consensus 410 dfVTcVaFnPvDDryFiS-----------------GSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~- 471 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFIS-----------------GSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF- 471 (712)
T ss_pred CeeEEEEecccCCCcEee-----------------cccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-
Confidence 36677788774 456664 33344444444333555444333345678999999996666654
Q ss_pred CCEEEEEEecCCc
Q 018144 228 KFRCRKYWLKGER 240 (360)
Q Consensus 228 ~~~i~~~~~~g~~ 240 (360)
.+.+..|+..+.+
T Consensus 472 ~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 472 NGYCRFYDTEGLK 484 (712)
T ss_pred ccEEEEEEccCCe
Confidence 5677888876654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=13 Score=33.07 Aligned_cols=160 Identities=11% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCcceEEEcCCCC-EEEEecCCeEEEEE-CC-ee-e--------------EEEec-CCeEEEEeCCCcEEEEc-CCC--
Q 018144 78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ-DG-TW-V--------------NWKFI-DSHLIICDNANGLHKVS-EDG-- 135 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g-~~-~--------------~~~~~-~g~L~v~~~~~gl~~~~-~~g-- 135 (360)
...-.++++..+|. |-.|+.++.+...+ ++ +. . .|... .+.+..+..++.+...+ ..+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 45556777777664 33444566555444 21 10 0 01111 22344555556666666 444
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 214 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~ 214 (360)
.....+. +. -..++..|+|+ +-+ +.....|.-+|..+.+.....+...+.|-+++
T Consensus 100 ~~~i~~~--~e----ni~i~wsp~g~~~~~------------------~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 100 TARIETK--GE----NINITWSPDGEYIAV------------------GNKDDRITFIDARTYKIVNEEQFKFEVNEISW 155 (313)
T ss_pred EEEeecc--Cc----ceEEEEcCCCCEEEE------------------ecCcccEEEEEecccceeehhcccceeeeeee
Confidence 2222111 11 22456667764 333 22345677777654444333334557888999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCce---eEEcCCCCEEE
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDGTFWI 268 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwv 268 (360)
..+++ +++..++.+.|..+..- .+..... ....|.| |.+|++|+.+.
T Consensus 156 ~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~s----i~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 156 NNSND-LFFLTNGLGCVEILSYP--SLKPVQS----IKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred cCCCC-EEEEecCCceEEEEecc--ccccccc----cccCCcceEEEEECCCCceEe
Confidence 98877 77787777777665431 2222222 2234444 56799997654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.03 E-value=20 Score=34.94 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=40.5
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..||+++|-+..|+|+--...+|+.||...+.....-.+ ..| -..+++.++|.+.++...
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~P--lstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHP--LSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee--cCC--cceeeecCCceEEEeecC
Confidence 369999998888999988888999999854332222122 122 245788888876665443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.99 E-value=11 Score=35.47 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=45.3
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
+-.+.+.++|...+|-++ +..+-.+|+.|........+ -+..-.++++|||+ .+.+..-.+
T Consensus 118 Vl~~~fsp~g~~l~tGsG-----------------D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg 179 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSG-----------------DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDG 179 (480)
T ss_pred EEEEEecCCCceEEecCC-----------------CceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCC
Confidence 345677888887776332 33455566655443332222 34567899999998 667777778
Q ss_pred EEEEEEec
Q 018144 230 RCRKYWLK 237 (360)
Q Consensus 230 ~i~~~~~~ 237 (360)
.|..++++
T Consensus 180 ~I~lwdpk 187 (480)
T KOG0271|consen 180 SIRLWDPK 187 (480)
T ss_pred eEEEecCC
Confidence 89888875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.96 E-value=15 Score=33.44 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=32.9
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC-CcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
....|.|++.|....+ ++--+.++..-+|-+. .++.+.+ ..+.-.....+..+|.||+=.
T Consensus 251 VYaVNsi~FhP~hgtl-vTaGsDGtf~FWDkdar~kLk~s~----~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTL-VTAGSDGTFSFWDKDARTKLKTSE----THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEecceEeecccceE-EEecCCceEEEecchhhhhhhccC----cCCCccceeEecCCCCEEEEE
Confidence 4567999999987655 4443344444444321 1222221 222223456788999988843
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.3 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=27.6
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d 261 (360)
||++.||+++...+.|..+|....+ ....+. ....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i~--vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATIP--VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEEE--CCCCCceEEeC
Confidence 5788999999999999999974321 111111 23467777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.09 E-value=17 Score=32.99 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred EEEcCCCCEEEEe-cCCeEEEEE-CCeeeEE---------------EecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 84 ASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNW---------------KFIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 84 i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~~---------------~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
+.++++|..+++. .|..|+-++ .|.-+.+ ...+..|+-|..++.++.+| ++| .+.+...
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h- 131 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH- 131 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc-
Confidence 3556677776655 566676665 3322221 11234577777778888899 777 3333211
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
..++|.+....-|-..++. +...+.+-.+|..+++.....+.-..-..+++..+++.++.
T Consensus 132 ----~~~vNs~~p~rrg~~lv~S----------------gsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 132 ----TSFVNSLDPSRRGPQLVCS----------------GSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ----cceeeecCccccCCeEEEe----------------cCCCceEEEEeecccchhhccccceeEEEEEecccccceee
Confidence 1356666666666555543 23455666666543333222222222334455444432322
Q ss_pred EeCCCCEEEEEEe
Q 018144 224 CESWKFRCRKYWL 236 (360)
Q Consensus 224 ~~t~~~~i~~~~~ 236 (360)
+ --.+.|..+++
T Consensus 192 g-gIdn~ikvWd~ 203 (338)
T KOG0265|consen 192 G-GIDNDIKVWDL 203 (338)
T ss_pred c-cccCceeeecc
Confidence 2 22334555554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=34 Score=36.11 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=78.8
Q ss_pred ceEEEcC-C-CCEEEEecCCeEEEEE--CCee-e----------EEEe--cCCeEEEEeCCC-cEEEEc-CCC--eEEEe
Q 018144 82 EDASMDK-N-GVIYTATRDGWIKRLQ--DGTW-V----------NWKF--IDSHLIICDNAN-GLHKVS-EDG--VENFL 140 (360)
Q Consensus 82 e~i~~d~-~-G~l~v~~~~G~I~~~~--~g~~-~----------~~~~--~~g~L~v~~~~~-gl~~~~-~~g--~~~l~ 140 (360)
.++++.+ + ..|..++.+|.|..++ +++. . .+.. .++.++++.... .+..++ .++ ...+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 4566654 2 3455556788887777 3321 1 1222 234444433333 344455 444 22221
Q ss_pred eccCCccccccccEEE-cCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--EEEeCCCcCcceEEEecC
Q 018144 141 SYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRD 217 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~-d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--~~~~~~l~~pngia~~~d 217 (360)
. . ..+..+.+ .++|...++ +..+|.|..||..+++. ..+.........+.+. +
T Consensus 616 ~--~----~~v~~v~~~~~~g~~lat-----------------gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~ 671 (793)
T PLN00181 616 T--K----ANICCVQFPSESGRSLAF-----------------GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671 (793)
T ss_pred c--C----CCeEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C
Confidence 1 0 12334455 345665554 33467888898765432 1222112234567775 5
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcC----cceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~----~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++.++ +.+..+.|..+++..... .....+. ........+.++++|.+.++..
T Consensus 672 ~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 672 SSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCEEE-EEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 65444 444556777777642110 1112221 1222344577888887555443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.49 E-value=21 Score=33.29 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=44.9
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE-cCCCC-eEEEEeCCCc--CcceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSN-ITTLVADGFY--FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~tg-~~~~~~~~l~--~pngia~~~dg~~l~v~~t 226 (360)
.-.|+++++|++..| +...|.|+|+ .-.+| ++..+..+.. ....++|++|+++| .+.+
T Consensus 176 lAalafs~~G~llAT-----------------ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~sS 237 (391)
T KOG2110|consen 176 LAALAFSPDGTLLAT-----------------ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL-AASS 237 (391)
T ss_pred eeEEEECCCCCEEEE-----------------eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE-EEec
Confidence 457888899988776 3345776663 32334 4444555543 34578999999844 5555
Q ss_pred CCCEEEEEEec
Q 018144 227 WKFRCRKYWLK 237 (360)
Q Consensus 227 ~~~~i~~~~~~ 237 (360)
.+..|..|.++
T Consensus 238 ~TeTVHiFKL~ 248 (391)
T KOG2110|consen 238 NTETVHIFKLE 248 (391)
T ss_pred CCCeEEEEEec
Confidence 66788888774
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.31 E-value=8.4 Score=39.62 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=74.2
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE-CCeee--EEEe-----------cCCeEEEEeCCCcEEEEc-CCC--eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWV--NWKF-----------IDSHLIICDNANGLHKVS-EDG--VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~--~~~~-----------~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~ 142 (360)
-.+++.|.-+.+.+++ .+|-+..++ +++.- .+.. ..+-+-++..+..|..+| .+. ++.+
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--- 572 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--- 572 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---
Confidence 3567888767676666 566555555 44321 1100 011122222234555665 332 2222
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEE
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~ 222 (360)
.|. .+.++++++++||+-.++ ..-++.|..+|.-|+...--..--.-+-.+.++|.|++|-
T Consensus 573 -~gh-~nritd~~FS~DgrWlis-----------------asmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 573 -WGH-GNRITDMTFSPDGRWLIS-----------------ASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred -hcc-ccceeeeEeCCCCcEEEE-----------------eecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 221 146899999999985443 1234678888877776532211122345688999999887
Q ss_pred EEeCCCCEEEEEE
Q 018144 223 VCESWKFRCRKYW 235 (360)
Q Consensus 223 v~~t~~~~i~~~~ 235 (360)
.+....+.|+-+.
T Consensus 634 T~Hvd~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVDQNGIYLWS 646 (910)
T ss_pred EEEecCceEEEEE
Confidence 7777767777654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.21 E-value=20 Score=32.67 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred EecCCeEEEEeCCCcEEEEc-CC--CeEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 113 KFIDSHLIICDNANGLHKVS-ED--GVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 113 ~~~~g~L~v~~~~~gl~~~~-~~--g~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
...+...|++++..|+..+| .+ .-+.+ ...+-. ....++.+.. ...|++|-. .++
T Consensus 93 ~vse~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt~--gyaygv~vsG-n~aYVadld------------------dgf 150 (370)
T COG5276 93 RVSEEYVYVADWSSGLRIVDISTPDSPTLI-GFLNTD--GYAYGVYVSG-NYAYVADLD------------------DGF 150 (370)
T ss_pred EecccEEEEEcCCCceEEEeccCCCCccee-ccccCC--ceEEEEEecC-CEEEEeecc------------------CcE
Confidence 34467799999999999998 33 22221 111100 2344555542 368898632 356
Q ss_pred EEEcCCCCeEEEEeCCCcCc----ceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 190 LKYDPSSNITTLVADGFYFA----NGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 190 ~~~d~~tg~~~~~~~~l~~p----ngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
+.+|..+-+--++..-...| ..++++ |++-|++... +++..+|...+
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d-~GL~ivDVSnp 201 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRD-GGLTIVDVSNP 201 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeC-CCeEEEEccCC
Confidence 66775443332332222222 456665 5679999874 56888888654
|
|
| >PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins | Back alignment and domain information |
|---|
Probab=88.12 E-value=10 Score=29.14 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=45.1
Q ss_pred CCcceEEEcCCCCEEEEe--cCC--eEEEEECCeeeEEEecCC-----eEEEEeCCCcEEEEc--CCC-eEE-EeeccCC
Q 018144 79 NHPEDASMDKNGVIYTAT--RDG--WIKRLQDGTWVNWKFIDS-----HLIICDNANGLHKVS--EDG-VEN-FLSYVNG 145 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~--~~G--~I~~~~~g~~~~~~~~~g-----~L~v~~~~~gl~~~~--~~g-~~~-l~~~~~~ 145 (360)
..|.-++.+++|+.+.++ ..+ .++.+| ...+.+..+.+ +++..|...--+.+. .+| .+. +. .
T Consensus 4 isPSYvy~~sng~~~ass~g~~~g~nvFyYD-sti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft~~----e 78 (123)
T PF11763_consen 4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYD-STIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFTFV----E 78 (123)
T ss_pred cccceEEEcCCCcEEeeccCCcCceeeEEec-CCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEEEc----c
Confidence 468888999999999887 223 344444 22222222222 133333322233333 344 221 11 1
Q ss_pred ccccccccEEEcCCCcEEEEe
Q 018144 146 SKLRFANDVVEASDGSLYFTV 166 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd 166 (360)
.....|..+.+..+|+||||-
T Consensus 79 ~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 79 SSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred cCCCCcEEEEEecCCcEEEEc
Confidence 123467788999999999974
|
It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media []. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.01 E-value=3.1 Score=38.85 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=63.7
Q ss_pred cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 161 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 161 ~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
-+|+||.. |-.+.-.+.+.+.+..+.|-.||+..++--+.... -..-..+.+.|+|+++|++++. +.|..||..+
T Consensus 202 PvW~tdi~--Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~ 278 (412)
T KOG3881|consen 202 PVWITDIR--FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRG 278 (412)
T ss_pred eeeeccce--ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccC
Confidence 36776643 22221122334556678888999875543222111 1223567889999999999985 5799999876
Q ss_pred CcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 239 ERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 239 ~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.+... .......|.+..|.+.+.+.+...+
T Consensus 279 ~kl~g--~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 279 GKLLG--CGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred ceeec--cccCCccCCcceEEEcCCCceEEee
Confidence 43321 2123455678888888877665544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.63 E-value=16 Score=35.52 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~l~v~~t~~ 228 (360)
..+|++.+-.. |+++-. -+.+|+.||....+...-.. ...| ..+++.++|. .+++.+.+
T Consensus 211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~ 271 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSK 271 (673)
T ss_pred cCcceecCCccceEEEec-----------------ccceEEEeecccccccceee-ecCCcceeeecCCce-EEEeecCC
Confidence 46888988764 555422 24578899875433221111 1223 4689999996 55666678
Q ss_pred CEEEEEEecCC
Q 018144 229 FRCRKYWLKGE 239 (360)
Q Consensus 229 ~~i~~~~~~g~ 239 (360)
++|+.||+.+.
T Consensus 272 G~~i~YD~R~~ 282 (673)
T KOG4378|consen 272 GELIAYDMRST 282 (673)
T ss_pred ceEEEEecccC
Confidence 99999998653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.56 E-value=22 Score=32.30 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=114.4
Q ss_pred ecCCCCCCcceEEEcCCCCE-EEEecCCeEEEEE---CCeeeEEE-----------ecCCeEEEEeCC-Cc--EEEEc-C
Q 018144 73 VGEGSVNHPEDASMDKNGVI-YTATRDGWIKRLQ---DGTWVNWK-----------FIDSHLIICDNA-NG--LHKVS-E 133 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l-~v~~~~G~I~~~~---~g~~~~~~-----------~~~g~L~v~~~~-~g--l~~~~-~ 133 (360)
+..|-+..--++.+..|.+. ..++.||++..+| +.++..+. .+.|....+..- +- +|.+. +
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 33344455556666666554 4455899999998 34443321 134553333322 22 33333 2
Q ss_pred --CCeEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcc
Q 018144 134 --DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFAN 210 (360)
Q Consensus 134 --~g~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pn 210 (360)
+|.........+.. .+.....+-+|++|.- +........+|-++|+......+ ....-
T Consensus 130 d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT------------------~SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHT-GYLSCCRFLDDNHILT------------------GSGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred cccccceeeeeecCcc-ceeEEEEEcCCCceEe------------------cCCCceEEEEEcccceEEEEecCCcccEE
Confidence 33111222222211 1333333444555543 23344567778777766554333 34456
Q ss_pred eEEEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 018144 211 GVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 211 gia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
++.+.| +++ .|++..-...-..+|+..+ .-.+.|..+ ..-.+.+.+=++|.-+++...
T Consensus 191 slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGSD----------------- 249 (343)
T KOG0286|consen 191 SLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGSD----------------- 249 (343)
T ss_pred EEecCCCCCC-eEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecCC-----------------
Confidence 788888 776 7777655444444554321 223344322 222455667777766665443
Q ss_pred HHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEE
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKV 357 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~ 357 (360)
.+....|| ...+.+..|..+. . +..++++.+.- |+|.++.+.....-+.
T Consensus 250 -----------------D~tcRlyDlRaD~~~a~ys~~~-~-~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 250 -----------------DATCRLYDLRADQELAVYSHDS-I-ICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred -----------------CceeEEEeecCCcEEeeeccCc-c-cCCceeEEEcccccEEEeeecCCceeEe
Confidence 23344455 3455666666432 2 34567777764 7777776655444433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.49 E-value=8.8 Score=34.77 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred EEEEEcCCCCeEEEEe---CC-CcCcceEEEecCCCEEEEEeCC----CCEEEEEEecCC--cCcceeeeccCCCCCCce
Q 018144 188 QLLKYDPSSNITTLVA---DG-FYFANGVALSRDEDYVVVCESW----KFRCRKYWLKGE--RKGKLETFAENLPGAPDN 257 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~---~~-l~~pngia~~~dg~~l~v~~t~----~~~i~~~~~~g~--~~~~~~~~~~~~~g~pd~ 257 (360)
..+.+|+++.+..+.. ++ ..+-.|+ +++||..||.+|.. .+-|-.||.... +.+++..+. -.|..
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGv-fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G----iGpHe 166 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGV-FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG----IGPHE 166 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccc-cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC----cCcce
Confidence 3455677655443322 11 2234454 89999999999753 233555665421 222222221 14888
Q ss_pred eEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceee
Q 018144 258 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTS 336 (360)
Q Consensus 258 i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~ 336 (360)
+.+-.||+..+...++ +...|..-+. +-.+. .. ...+..++ .+|++++...-|.......+--
T Consensus 167 v~lm~DGrtlvvanGG-------IethpdfgR~----~lNld----sM-ePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 167 VTLMADGRTLVVANGG-------IETHPDFGRT----ELNLD----SM-EPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred eEEecCCcEEEEeCCc-------eecccccCcc----ccchh----hc-CccEEEEeccccchhhhccCchhhhhcceee
Confidence 9999999766654441 1111111100 00000 01 12445566 6888877655553322223333
Q ss_pred EEEE-CCEEEEEeC
Q 018144 337 GLQV-DNHLYVISL 349 (360)
Q Consensus 337 ~~~~-~g~Lylgs~ 349 (360)
+..+ +|++|+|.-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 3333 588998854
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.39 E-value=27 Score=33.22 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=49.8
Q ss_pred cCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d 261 (360)
+.+.+.++.+|.+......... ..+....+++++||+.++.... ..+|..|+.... .......+.. ....+.+.
T Consensus 330 Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~--~dr~lise~~--~its~~iS 404 (519)
T KOG0293|consen 330 GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREAR--VDRGLISEEQ--PITSFSIS 404 (519)
T ss_pred cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhhh--hhhccccccC--ceeEEEEc
Confidence 5567789999987443332211 1234578999999998877765 456777765421 1111111111 24567788
Q ss_pred CCCCEEEEEec
Q 018144 262 PDGTFWIAIIK 272 (360)
Q Consensus 262 ~~G~lwva~~~ 272 (360)
.+|.+.+....
T Consensus 405 ~d~k~~LvnL~ 415 (519)
T KOG0293|consen 405 KDGKLALVNLQ 415 (519)
T ss_pred CCCcEEEEEcc
Confidence 88887665443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=37 Score=34.23 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCc---ceEEEecCCCEEEEEe
Q 018144 187 GQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCE 225 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~p---ngia~~~dg~~l~v~~ 225 (360)
..+.+|||.+++++.+.. +..+ .+++. -+| .+|+..
T Consensus 367 ~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviG 405 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIG 405 (557)
T ss_pred ceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEe
Confidence 468999999888776432 2222 12222 245 488864
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=86.74 E-value=45 Score=35.06 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE---------E------------------EecCCeEEEEeC----------CCcEE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN---------W------------------KFIDSHLIICDN----------ANGLH 129 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~---------~------------------~~~~g~L~v~~~----------~~gl~ 129 (360)
++.||+++.+|+|+.+| +|+..- + ...++.++|+.. ..-+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 45899999999999999 675331 0 012567888753 12366
Q ss_pred EEc-CCC-eEE-Eeecc--------CCccc--ccc---ccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 130 KVS-EDG-VEN-FLSYV--------NGSKL--RFA---NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 130 ~~~-~~g-~~~-l~~~~--------~~~~~--~~~---n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.+| .+| ... +.... .+... ..+ .-++.|++ |.+|+...+...+.-...+........+.|+.+
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 788 788 332 21110 01000 111 23566654 567775433211100000001112335789999
Q ss_pred cCCCCeEEEE
Q 018144 193 DPSSNITTLV 202 (360)
Q Consensus 193 d~~tg~~~~~ 202 (360)
|.+||+.+..
T Consensus 420 D~~TGk~~W~ 429 (764)
T TIGR03074 420 DATTGKERWV 429 (764)
T ss_pred eCCCCceEEE
Confidence 9999988654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=41 Score=33.97 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCeEEEEeCCCcC---cceEEEecCCCEEEEEeCCC------CEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGFYF---ANGVALSRDEDYVVVCESWK------FRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~---pngia~~~dg~~l~v~~t~~------~~i~~~~~~g 238 (360)
..+.+|||.+++++.+.. +.. ..+++.- +| .+|+..... ..+.+||++.
T Consensus 432 ~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecCC-CCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 469999999998876542 222 2234433 34 488875321 2467888754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=85.84 E-value=16 Score=35.64 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=61.0
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..+.+++.+|-++-|+.- ..|.|..+|..+..+.....+ ......|.+++||..||-.. -.
T Consensus 511 aCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG-lD 572 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG-LD 572 (705)
T ss_pred hhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC-Cc
Confidence 467888999999888632 356788888864433222222 23567789999998666444 45
Q ss_pred CEEEEEEecCC-cCcce----eeeccCCCCCCce--eEEc-CCCCEEEEEec
Q 018144 229 FRCRKYWLKGE-RKGKL----ETFAENLPGAPDN--INLA-PDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~-~~~~~----~~~~~~~~g~pd~--i~~d-~~G~lwva~~~ 272 (360)
+.|..+|+... +..+. ++|. +.-.|.+ +++. +++++||-...
T Consensus 573 ntvRcWDlregrqlqqhdF~SQIfS--Lg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFSSQIFS--LGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred cceeehhhhhhhhhhhhhhhhhhee--cccCCCccceeeecccCcEEEEecC
Confidence 67888887422 21111 1221 2223443 5554 56788885543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.62 E-value=24 Score=34.24 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC--EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
.+++.+|.++++..++.......-.-+++|||+.+.++....+ .|+.+|+.+..... + .+..+.-..=.+.+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---L-t~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---L-TNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---c-ccCCccccCccCCCCC
Confidence 4688889888877666553223334578999998888876543 57777776643211 2 2233332333456777
Q ss_pred C
Q 018144 265 T 265 (360)
Q Consensus 265 ~ 265 (360)
.
T Consensus 294 ~ 294 (425)
T COG0823 294 S 294 (425)
T ss_pred C
Confidence 5
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=25 Score=30.97 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE---CCee-eEEEe------------cCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ---DGTW-VNWKF------------IDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~---~g~~-~~~~~------------~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.+-+..+|+--+++.+.+..|+- .|.. +.+.. ..-.+--|..++-+..+| .+| .+.+...
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH- 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH- 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-
Confidence 34455677766666555555553 3321 11110 111222233345677777 777 4444211
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCcCcceEEEecCCCE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDY 220 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~~pngia~~~dg~~ 220 (360)
...+|.+.+..+-.+.++-+ -...+-.+|=.+..++.+. +.......|.+. + .
T Consensus 101 ----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~-h 156 (307)
T KOG0316|consen 101 ----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--E-H 156 (307)
T ss_pred ----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeEEEec--c-c
Confidence 13578888888888888632 2334455554333333221 112223334333 2 3
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.+++.+..+++..|++.- ++. ..+...-..+.+.+.++|+.-++.
T Consensus 157 eIvaGS~DGtvRtydiR~---G~l--~sDy~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRK---GTL--SSDYFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred EEEeeccCCcEEEEEeec---cee--ehhhcCCcceeEEecCCCCEEEEe
Confidence 667777788899999842 221 112222124567889999865544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=85.14 E-value=48 Score=33.93 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcC-cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~-pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
...|-.+|-.+|....+..+... ...++++|+|++| ++....+.|..+|+.+++. ...+.. ..+..+.+.+..+|
T Consensus 556 D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~-Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKG-HTGTIYSLSFSRDG 631 (707)
T ss_pred CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhc-ccCceeEEEEecCC
Confidence 33455566666666555555433 3578999999755 4444456677777754221 111221 23456678889999
Q ss_pred CEEEEEec
Q 018144 265 TFWIAIIK 272 (360)
Q Consensus 265 ~lwva~~~ 272 (360)
++.++...
T Consensus 632 ~vLasgg~ 639 (707)
T KOG0263|consen 632 NVLASGGA 639 (707)
T ss_pred CEEEecCC
Confidence 98887654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.91 E-value=17 Score=33.98 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
.++|+.||..+++...-..--..+|+|+++| +.+.|++......++-||+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 5678888876554432222234689999999 55788888778889999874
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.80 E-value=31 Score=34.88 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=69.3
Q ss_pred CCCEEEEe-cC-C-----eEEEEE--CCeeeEE------------EecCCeEEEEeCCCc------EEEEcC-CC-eEEE
Q 018144 89 NGVIYTAT-RD-G-----WIKRLQ--DGTWVNW------------KFIDSHLIICDNANG------LHKVSE-DG-VENF 139 (360)
Q Consensus 89 ~G~l~v~~-~~-G-----~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~g------l~~~~~-~g-~~~l 139 (360)
+|.||+.. .+ | .+.++| .++|..+ ...+|.||+.....| +-++|+ +. .+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 66888765 44 2 467777 4444432 123677887554332 445552 22 3332
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~d 217 (360)
+.-.. ...-.++++ -+|.||+.-.... .......+.+|||.+++++....- -..-.|++.- +
T Consensus 412 a~m~~---~r~~~gv~~-~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~ 475 (571)
T KOG4441|consen 412 APMLT---RRSGHGVAV-LGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-N 475 (571)
T ss_pred CCCCc---ceeeeEEEE-ECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEEE-C
Confidence 21111 112223333 5789999633210 011335799999999988765431 1122455544 3
Q ss_pred CCEEEEEeCCC-----CEEEEEEecC
Q 018144 218 EDYVVVCESWK-----FRCRKYWLKG 238 (360)
Q Consensus 218 g~~l~v~~t~~-----~~i~~~~~~g 238 (360)
+ .+|+..... ..+.+||+..
T Consensus 476 ~-~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 476 G-KIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred C-EEEEECCccCCCccceEEEEcCCC
Confidence 3 588886432 2477888754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.75 E-value=30 Score=34.17 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=44.9
Q ss_pred cCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC--CCCEEEEEEecCCcCcceeeeccCCCCCCceeEE
Q 018144 183 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~ 260 (360)
+++.|.++-|+...|+++.....-..++++...-+++.+....+ ...++..+..+. ......+.. .+..+.++++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~-~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWKE-QKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceeeeeecc-CCCccceEEE
Confidence 55677888888877888776554444444332222222222222 223333333321 112223322 2235788999
Q ss_pred cCCCCEEEEEec
Q 018144 261 APDGTFWIAIIK 272 (360)
Q Consensus 261 d~~G~lwva~~~ 272 (360)
.+||.+-+....
T Consensus 153 s~D~~~l~~as~ 164 (541)
T KOG4547|consen 153 SPDGKILLTASR 164 (541)
T ss_pred cCCCCEEEeccc
Confidence 999987765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.69 E-value=39 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
..+-.||...|.+-....--..++.+++||-+..+|+... .+.|+..++.
T Consensus 198 ~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~-~G~I~~~~~~ 247 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE-EGKIFQNLLF 247 (476)
T ss_pred ceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC-cceEEeeehh
Confidence 3455566666654332222335678999999987777665 5678877654
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=84.65 E-value=0.8 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=15.3
Q ss_pred cccccEEEcCCCcEEEE
Q 018144 149 RFANDVVEASDGSLYFT 165 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vt 165 (360)
..+++|++|++|++|++
T Consensus 13 ~~~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVT 29 (38)
T ss_pred eeEEEEEECCCCCEEEE
Confidence 35889999999999997
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.57 E-value=39 Score=31.63 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE-----------EEecCCe--EEEEeCCCcEEEEc-CC-C-eEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN-----------WKFIDSH--LIICDNANGLHKVS-ED-G-VEN 138 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~-----------~~~~~g~--L~v~~~~~gl~~~~-~~-g-~~~ 138 (360)
+.=-+++++|+.+..+++. .|+.|-.+| +|+... +.....+ ||-|..++-+-++| .. . ++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 4446789999875444433 566666667 665332 1122222 44444334444555 32 2 222
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEe
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTV 166 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd 166 (360)
+ .|. +..+..++..|.-.+.+|-
T Consensus 231 Y----hGH-lS~V~~L~lhPTldvl~t~ 253 (460)
T KOG0285|consen 231 Y----HGH-LSGVYCLDLHPTLDVLVTG 253 (460)
T ss_pred h----ccc-cceeEEEeccccceeEEec
Confidence 2 121 2456677777766677763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.36 E-value=39 Score=32.14 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=40.8
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc---CcceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~---~pngia~~~dg~~l~v~~t 226 (360)
.+-+++.|+|....+ +..+|+|+.++..+++++.....-. ..+.+++++-|+.|+-++.
T Consensus 390 wtrvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 456678887764443 5568899999999999987654322 2456778888776665553
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.26 E-value=50 Score=32.62 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcc-eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pn-gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
....+.+|.+ |.++.......... .+...++|.+++... .++..+|..|......+. ......+-..+...++|
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l-~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDL-PGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE---TTEE-B-S-EEE-TTS
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCCEEEeeec-CCcccccccccEECCCC
Confidence 3568889976 87766544322222 266778887554444 679999987752222111 10000123567888999
Q ss_pred CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-----CCC-----------
Q 018144 265 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-----PTG----------- 328 (360)
Q Consensus 265 ~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-----~~g----------- 328 (360)
++.+-......... + . ........|+.+|++|+++..+.- +..
T Consensus 202 n~L~l~~~~~~~~~------~----------~-----~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~ 260 (477)
T PF05935_consen 202 NLLILASETKYVDE------D----------K-----DVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGD 260 (477)
T ss_dssp -EEEEEEETTEE-T------S----------------EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSS
T ss_pred CEEEEEeecccccC------C----------C-----CccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccc
Confidence 87665542110000 0 0 001113579999999999988732 111
Q ss_pred -------CcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 329 -------QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 329 -------~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
.-.-++.++..+ ++.|.+++-..+.|.+++
T Consensus 261 ~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 261 ISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp SS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred cccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 011234555554 489999999999999887
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=83.26 E-value=4.7 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=17.4
Q ss_pred ccccccEEEcCCC-cEEEEeCC
Q 018144 148 LRFANDVVEASDG-SLYFTVSS 168 (360)
Q Consensus 148 ~~~~n~l~~d~dG-~l~vtd~~ 168 (360)
+.+||||.+++++ .||+++..
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred CCCCceEEEcCCCCEEEEEecc
Confidence 4689999999987 69998754
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=83.04 E-value=1.1 Score=27.31 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCceeEEcCCCCEEEEEec
Q 018144 254 APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+|++|++||+||+-..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 4789999999999998654
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=65 Score=33.47 Aligned_cols=51 Identities=6% Similarity=-0.026 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCCeE--EEEeCCCcCcceEEEecCCCEEEEEeCC-----CCEEEEEEecCC
Q 018144 186 HGQLLKYDPSSNIT--TLVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYWLKGE 239 (360)
Q Consensus 186 ~g~l~~~d~~tg~~--~~~~~~l~~pngia~~~dg~~l~v~~t~-----~~~i~~~~~~g~ 239 (360)
.-.|+.+|..+|+. +.+ .+. ..++++.+|++.+|++... ...|+++++...
T Consensus 152 ~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 34688888887752 111 121 2468999999888777442 257888887543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.45 E-value=49 Score=31.93 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=59.1
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
+|-+. -...+..|++....+- ..+ ..|..+..+++|+.+ .+|+|+..+...... +.++|....
T Consensus 191 l~TaS-~D~t~k~wdlS~g~LL--lti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~-----------~~~~~~~~~ 254 (476)
T KOG0646|consen 191 LYTAS-EDRTIKLWDLSLGVLL--LTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNL-----------LFKLSGQSA 254 (476)
T ss_pred EEEec-CCceEEEEEeccceee--EEE--ecCCcceeEEEcccccEEEecCCcceEEeee-----------hhcCCcccc
Confidence 54443 3456667777543211 111 234456778888766 477776653211000 011111000
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
. -..-.+++++..+.++....+. ..+|++... ||.|.+.+.....+.+.+.
T Consensus 255 ~-------v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 255 G-------VNQKGRHEENTQINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred c-------ccccccccccceeeeeccccCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 0 0112334566666666543331 468888775 7999998888888887763
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.43 E-value=37 Score=30.53 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=43.2
Q ss_pred EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 202 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 202 ~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+...-..++...+++-+++++.+.. .+.|.+||...++. ..+. .+....-.++|.+.++..++|....
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe-~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHE-DGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecC-CCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEeccc
Confidence 3334456777889999986665554 57899999853210 0111 1112224678999999999997654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.24 E-value=41 Score=30.90 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~ 284 (360)
...|.+.+.|... ++++.+..+.|.-||...... ...++|.+..+ ...|.+-+.|. +.||+..+
T Consensus 173 devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdHp----------- 238 (430)
T KOG0640|consen 173 DEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDHP----------- 238 (430)
T ss_pred Ccccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCCC-----------
Confidence 3568899999886 778888888898899753321 12334433222 34577778785 56666552
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEEe
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~ 358 (360)
-+-.||-+.-....-..|+......++++.... ++||+.......|..++
T Consensus 239 ------------------------~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 239 ------------------------TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ------------------------ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 333344332222111224444456677777764 89999887777766543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.55 E-value=76 Score=33.54 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE-CC--eeeEEEecCCeEEEEeCC--CcEEEEc-CCCeEEEeeccCCccccc
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSHLIICDNA--NGLHKVS-EDGVENFLSYVNGSKLRF 150 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g--~~~~~~~~~g~L~v~~~~--~gl~~~~-~~g~~~l~~~~~~~~~~~ 150 (360)
...-.++.+++..++.++. .|+.|..+| +. .++.|...++|.|+-... ..++.-. ..|+.++.-.-+
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE------ 323 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE------ 323 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc------
Confidence 4566788888877777777 677777777 43 345555566776654432 1233333 233333321111
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CC---CcCcceEEEecCCCEEEEE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DG---FYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~---l~~pngia~~~dg~~l~v~ 224 (360)
.-..++..++-+|+- ...|..+|..|.+-..+. .. -.-|..+.++|..+.+.++
T Consensus 324 rpa~~v~~n~LfYvk--------------------d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 324 RPAYAVNGNGLFYVK--------------------DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred CceEEEcCCEEEEEc--------------------cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 123456666666662 235777777553222221 11 1345778899988778888
Q ss_pred e
Q 018144 225 E 225 (360)
Q Consensus 225 ~ 225 (360)
.
T Consensus 384 s 384 (1202)
T KOG0292|consen 384 S 384 (1202)
T ss_pred e
Confidence 4
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=47 Score=30.64 Aligned_cols=72 Identities=21% Similarity=0.138 Sum_probs=44.4
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC--eEEE-Ee--CCCcCcceEEEecCCCEEEEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTL-VA--DGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg--~~~~-~~--~~l~~pngia~~~dg~~l~v~ 224 (360)
.+.++++.+||.-..|-+. .+.|..++.++- +-+. +. -.+..|.-++|.||-+.++|+
T Consensus 88 ~vt~~~FsSdGK~lat~~~-----------------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISG-----------------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ceeeeEEcCCCceeEEEeC-----------------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 4668888888876665332 233333433211 1111 11 124478899999998877777
Q ss_pred eCCCCEEEEEEecC
Q 018144 225 ESWKFRCRKYWLKG 238 (360)
Q Consensus 225 ~t~~~~i~~~~~~g 238 (360)
-..++.|+.|.+..
T Consensus 151 ~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVK 164 (420)
T ss_pred EccCCEEEEEEeee
Confidence 77788898887643
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=70 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=41.7
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE---EcCCCCeEEE-----EeCCCcC-cceEEEecCCC
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL-----VADGFYF-ANGVALSRDED 219 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~tg~~~~-----~~~~l~~-pngia~~~dg~ 219 (360)
.+..+.+.+||. |.+.- .|+|+. .....|+.+. +..++.. +..+.+..++.
T Consensus 449 ~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~ 509 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS 509 (591)
T ss_pred CcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence 477888999994 54421 123333 2233354322 3334444 47788998887
Q ss_pred EEEEEeC-CCCEEEEEEecCCc
Q 018144 220 YVVVCES-WKFRCRKYWLKGER 240 (360)
Q Consensus 220 ~l~v~~t-~~~~i~~~~~~g~~ 240 (360)
|++... ....++++.++|..
T Consensus 510 -L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 510 -LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred -EEEEecCCCCceEEEecCCcc
Confidence 555544 34568888888753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.30 E-value=60 Score=31.56 Aligned_cols=49 Identities=22% Similarity=0.009 Sum_probs=32.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE--EEEEEe
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--CRKYWL 236 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~--i~~~~~ 236 (360)
.|+++|+++++.+.+.........-.++|||+.+.+.....+. |..+++
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred ceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 6999999877776665544444466789999977666643333 455554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.28 E-value=7.2 Score=37.52 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=34.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCc--ceeeec--------------cCCCCCCceeEEcCCC-CEEEEE
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFA--------------ENLPGAPDNINLAPDG-TFWIAI 270 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~--------------~~~~g~pd~i~~d~~G-~lwva~ 270 (360)
.+..|.++.|.++|||+....+.|..||+..+..- ..+++. ..+.|.|.-+.++.|| ++||++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 45788999999999999999999999999754211 111111 1234567788899999 699987
Q ss_pred ec
Q 018144 271 IK 272 (360)
Q Consensus 271 ~~ 272 (360)
.-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 53
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 2fp8_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 4e-11 | ||
| 2v91_A | 302 | Structure Of Strictosidine Synthase In Complex With | 5e-11 | ||
| 2fpb_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 5e-10 |
| >pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
| >pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302 | Back alignment and structure |
|
| >pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 1e-67
Identities = 66/327 (20%), Positives = 111/327 (33%), Gaps = 64/327 (19%)
Query: 72 KVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSH---------- 118
+ E P + D YT+ +DG + + + + +V++ + +
Sbjct: 12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST 71
Query: 119 ----------------------LIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV 154
L I D L V +G + V+G ++ V
Sbjct: 72 DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV 131
Query: 155 -VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 213
V+ G +YFT S+ Y + G+L+KYDPS+ TTL+ + G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 214 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 273
+S D +V+V E + KYWL+G +KG E +P P NI DG FW++
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSS--- 246
Query: 274 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 333
+ + I E G I+ + P
Sbjct: 247 ---------------------SEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285
Query: 334 VTSGLQVDNHLYVISLTSNFIGKVQLS 360
+ D LY+ +L +G +
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 58/369 (15%), Positives = 104/369 (28%), Gaps = 68/369 (18%)
Query: 32 LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGV 91
+ L+ L + S ++ +L + V +G N ED + NG+
Sbjct: 5 TALTLLGMGLALFDR-QKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62
Query: 92 IYTATRDGWIKRL-----------------QDGTWVNWKFID-------------SHLII 121
+ ++ + + ++ + I S I
Sbjct: 63 AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122
Query: 122 CDNANGL----HKVSEDGVENFLSYVNGSKLRF-----------ANDVVEASDGSLYFTV 166
DN L H S VE F L ND+V Y T
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182
Query: 167 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 226
P+ ++ G + Y P+ +VA+GF FANG+ +S D YV + E
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAEL 240
Query: 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSK 285
+ Y + DNI++ P G W+ R +
Sbjct: 241 LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299
Query: 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 345
VL + + + + + G ++ T L
Sbjct: 300 PGSEVL-----------------RIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLL 342
Query: 346 VISLTSNFI 354
+ ++ +
Sbjct: 343 IGTVFHKAL 351
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 3e-21
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 13/161 (8%)
Query: 119 LIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 176
L + D GL V DG E G +++ ND +G+L+ T +
Sbjct: 85 LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT--APAGEVAPA 142
Query: 177 CLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRCR 232
+ G + + + V F F NG+A+ D ++V E+ +
Sbjct: 143 DYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201
Query: 233 KYWLKGE----RKGKLETFAENLPGAPDNINLAPDGTFWIA 269
Y +KG K G D ++ D +A
Sbjct: 202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-16
Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 18/243 (7%)
Query: 44 VYFSPISPVLDEVPQPAVL---SATQLQDFIKVGEGSVNHPEDASM---D-KNGVIYTAT 96
V P + A L L D EG ++ D +
Sbjct: 14 VPADCDPPRITHAALAARLGDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWR 73
Query: 97 RDG-WIKRLQDGTWVNWKFIDS--HLIICDNANGLH-KVSEDG-VENFLSYVNGSKLRFA 151
DG L + N +D+ L+ C++ + DG + G +L
Sbjct: 74 EDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSP 133
Query: 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211
ND++ A DG+++FT H + + P + NG
Sbjct: 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADLDHPNG 192
Query: 212 VALSRDEDYVVVCES-----WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266
+A S DE + V ++ + + FA G PD + G
Sbjct: 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252
Query: 267 WIA 269
W +
Sbjct: 253 WSS 255
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 9e-14
Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 17/220 (7%)
Query: 63 SATQLQDFIKVGEGSVNHPEDASM---D-KNGVIYTATRDG-WIKRLQDGTWVNWKFIDS 117
A +L D EG V P +++ D + + + DG + N ++
Sbjct: 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNK 78
Query: 118 --HLIICDNANG-LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 172
HLI C + L + E G E+ G KL NDV A DGSL+F+ +
Sbjct: 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID 138
Query: 173 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232
E P + + P + + NG+A + +V ++
Sbjct: 139 KPEEGYGGEMELPGRWVFRLAPDGTL-SAPIRDRVKPNGLAFLPSGNLLVS-DTGDNATH 196
Query: 233 KYWLKGERKGKL---ETFAENLPGAPDNINLAPDGTFWIA 269
+Y L G+ PG D + + G W +
Sbjct: 197 RYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 116 DSHLIICDNA-----NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK 170
D L +C G+ +E+G + S +D+V S G YFT
Sbjct: 97 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT----- 151
Query: 171 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230
P G + P T + ANG+ALS DE + V E+ R
Sbjct: 152 ------DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 205
Query: 231 CRKYWLK-----GERKGKLETFAENLPGAPDNINLAPDGTFWIA 269
+ L+ + G + PD+ + D ++A
Sbjct: 206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 38/277 (13%), Positives = 81/277 (29%), Gaps = 49/277 (17%)
Query: 74 GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFI-------------DSH 118
++ +G ++ T I R+ + G + +
Sbjct: 52 LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111
Query: 119 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 177
+ + + ++++DG Y +K + + + SD +L+FT + +
Sbjct: 112 IWFTEMNGNRIGRITDDG--KIREYELPNKGSYPSFITLGSDNALWFTENQN-------- 161
Query: 178 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236
+ + S +IT + G+ D D + E + +
Sbjct: 162 ---------NAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRI-- 209
Query: 237 KGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295
G++ F P A P I W + A ++ L S+ +I+
Sbjct: 210 --TTSGEITEFKIPTPNARPHAITAGAGIDLWFT--EWGANKIGRLTSNNIIEEYPIQIK 265
Query: 296 KLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLM 331
I G I A + I + + M
Sbjct: 266 SAEPHGICFDGET--IWFAMECDKIGK--LTLIKDNM 298
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 37/254 (14%), Positives = 74/254 (29%), Gaps = 45/254 (17%)
Query: 119 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 177
+ I + + ++ DG Y + + +SDG ++FT +++
Sbjct: 28 VWITQHKANMISCINLDG--KITEYPLPTPDAKVMCLTISSDGEVWFTENAA-------- 77
Query: 178 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236
++ + I + + G+ + + E R +
Sbjct: 78 ---------NKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRI-- 125
Query: 237 KGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295
GK+ + G+ P I L D W + + S I P
Sbjct: 126 --TDDGKIREYELPNKGSYPSFITLGSDNALWFTE--NQNNAIGRITESGDITEFKIPTP 181
Query: 296 KLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDPTGQLMSFVT-------SGLQVD--NH 343
IT G A + E I R + +G++ F +
Sbjct: 182 ASGPVGITKGNDDA--LWFVEIIGNKIGR--ITTSGEITEFKIPTPNARPHAITAGAGID 237
Query: 344 LYVISLTSNFIGKV 357
L+ +N IG++
Sbjct: 238 LWFTEWGANKIGRL 251
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 42/220 (19%)
Query: 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 210
+ + G ++ T + + + IT +
Sbjct: 18 YGITVSDKGKVWITQHKA-----------------NMISCINLDGKITEYPLPTPDAKVM 60
Query: 211 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 269
+ +S D V E+ + + +KG ++ + P + P I P+G W
Sbjct: 61 CLTISSD-GEVWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT 115
Query: 270 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDP 326
+++ R+ + I+ + FITLG A + E + I R +
Sbjct: 116 --EMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGR--ITE 169
Query: 327 TGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 357
+G + F G+ + L+ + + N IG++
Sbjct: 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 26/205 (12%)
Query: 81 PEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSH-----------LIICDNANG 127
E+ + +G I+ T G I + DG ++ L+
Sbjct: 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD 93
Query: 128 -LHKVSEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 185
+ VS + + + F N + SD S + I +P
Sbjct: 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL-----IDVVQP 148
Query: 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKL 244
G + P + + F L R +++ V + K + + K G+
Sbjct: 149 SGSIWLEHPMLARSNSESV---FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205
Query: 245 ETFAENLPGAPDNINLAPDGTFWIA 269
E F E D+ +G + A
Sbjct: 206 EIFVE--QTNIDDFAFDVEGNLYGA 228
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 7e-07
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 38/226 (16%)
Query: 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 209
F ++ A DG+++ T + G+++ P N A
Sbjct: 33 FLENLASAPDGTIFVT-------------NH----EVGEIVSITPDGNQQI-HATVEGKV 74
Query: 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWI 268
+G+A + + D V W + G +ET N I D +
Sbjct: 75 SGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132
Query: 269 A--------IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 320
A +I + I ++ + + + G + E ++
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192
Query: 321 RNLVDPTGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 357
R VD T + D +LY + N + ++
Sbjct: 193 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 32/268 (11%), Positives = 73/268 (27%), Gaps = 67/268 (25%)
Query: 116 DSHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPH 174
D + + + + + G + + ++ +S G ++FT + +
Sbjct: 30 DGKVWFTQHKANKISSLDQSG--RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA----- 82
Query: 175 EYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRK 233
++ K T + G+ + + + R K
Sbjct: 83 ------------NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGK 129
Query: 234 YWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA------IIKLDARRMKILNSSKL 286
G + + G+ P I L D W I ++ + KL
Sbjct: 130 LT----ADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-------TGKL 178
Query: 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----RNLV---DPTGQLMSFVT--- 335
++ L T I DG + N + TG++ +
Sbjct: 179 EEYPLP----------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTP 228
Query: 336 ----SGLQVD--NHLYVISLTSNFIGKV 357
+ + ++ +N IG++
Sbjct: 229 NARPHAITAGKNSEIWFTEWGANQIGRI 256
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 42/214 (19%)
Query: 74 GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKF-----------IDS--H 118
+ P + NG I+ T I +L DGT + + S
Sbjct: 99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158
Query: 119 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 177
L +N N + +++ G Y + + +DG+L+F
Sbjct: 159 LWFTENQNNSIGRITNTG--KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-------- 208
Query: 178 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236
++ + + I+ + + + ++ + E + +
Sbjct: 209 ---------NKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQIGRI-- 256
Query: 237 KGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 269
++ + A P I DG+ W A
Sbjct: 257 --TNDNTIQEYQLQTENAEPHGITFGKDGSVWFA 288
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 38/218 (17%)
Query: 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 210
+ + DG ++FT + ++ D S I V
Sbjct: 23 YGITSSEDGKVWFTQHKA-----------------NKISSLDQSGRIKEFEVPTPDAKVM 65
Query: 211 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 269
+ +S + E+ + K +KG + P + P I +G W
Sbjct: 66 CLIVSSL-GDIWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT 120
Query: 270 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAEDGTIIRNLVDPTG 328
+L+ R+ L + I + FITLG A ++ +I R + TG
Sbjct: 121 --QLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR--ITNTG 176
Query: 329 QLMSFVTS-------GLQVDN--HLYVISLTSNFIGKV 357
+L + G+ N L+ + + N IG++
Sbjct: 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 37/180 (20%)
Query: 72 KVGEGSVNHPEDASMDKNGVIYTA-TRDGWIKRLQDGTWVNWKF------------IDS- 117
+ +N+PE ++D G +Y A + + +L G+ +D+
Sbjct: 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160
Query: 118 -HLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 175
++ + D N + K+ + N + + + + G++Y T ++
Sbjct: 161 GNVYVTDTDNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------ 212
Query: 176 YCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKY 234
Q++K S +T++ G VA+ D V V + R K
Sbjct: 213 -----------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGNDRVVKL 260
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 31/213 (14%), Positives = 69/213 (32%), Gaps = 39/213 (18%)
Query: 73 VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKF------------IDS--H 118
+ + P+ ++D G +Y + + L G+ +D+
Sbjct: 61 LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA 120
Query: 119 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 177
+ + D N + K++ + + + L + V + G++Y T +
Sbjct: 121 VYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD--------- 169
Query: 178 LDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWL 236
+ +++K + SN ++ G+A+ V V E + K
Sbjct: 170 --------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLA 220
Query: 237 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269
L N P A + + D T ++A
Sbjct: 221 GSTTSTVLPFTGLNTPLA---VAVDSDRTVYVA 250
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 46/225 (20%)
Query: 74 GEGSVNHPEDASMDKNGVIYTATRD--GWIKRLQDGTWVNWKF------------IDS-- 117
G P ++D G +Y + G + +L G+ +D
Sbjct: 19 GIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG 78
Query: 118 HLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 177
+ + D N V+ N + + L + + + G++Y
Sbjct: 79 TVYVTDFNN--RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA------------ 124
Query: 178 LDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236
+ + +++K S T++ G +GVA+ V V ++ R K
Sbjct: 125 -----DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA 178
Query: 237 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA------IIKLDA 275
+ AP I + GT ++ ++KL A
Sbjct: 179 ESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 53/295 (17%), Positives = 99/295 (33%), Gaps = 96/295 (32%)
Query: 102 KRLQDG--TWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGSKLR--------FA 151
+ ++DG TW NWK ++ CD L + +E+ L+ + ++ R F
Sbjct: 335 ESIRDGLATWDNWKHVN-----CDK---LTTI----IESSLNVLEPAEYRKMFDRLSVFP 382
Query: 152 NDV-----------------------VEASDGSLYF--TVSSSKYLPHEYCLDI---LEG 183
+ SL S+ +P Y L++ LE
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLEN 441
Query: 184 KP--HGQLL-KYD-----PSSNITTLVADGFYFANGVA--LSRDEDYVVVCESWK-FRCR 232
+ H ++ Y+ S ++ D YF + + L E E FR
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHP----ERMTLFR-M 495
Query: 233 KY----WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA-IIKLDARRMKILNSSKLI 287
+ +L E+K + ++ A N G +N F+ I D + +++N+ I
Sbjct: 496 VFLDFRFL--EQKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNA---I 548
Query: 288 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR-NLVDPTGQLMSFVTSGLQVD 341
L +LI ++ ++R L+ + F + QV
Sbjct: 549 LDFLPKI------------EENLIC-SKYTDLLRIALMAEDEAI--FEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 100.0 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.94 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.92 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.91 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.9 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.87 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.84 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.84 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.84 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.84 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.83 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.83 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.82 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.79 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.78 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.72 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.72 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.7 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.7 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.7 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.69 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.69 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.68 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.68 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.65 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.64 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.64 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.63 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.63 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.62 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.58 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.58 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.57 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.56 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.55 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.55 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.51 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.51 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.5 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.49 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.47 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.45 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.45 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.43 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.41 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.4 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.39 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.37 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.35 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.33 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.33 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.31 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.3 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.26 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.26 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.26 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.23 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.21 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.2 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.18 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.18 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.14 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.12 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.12 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.11 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.08 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.07 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.05 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.03 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.03 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.02 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.01 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.98 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.98 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.97 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.95 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.92 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.91 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.85 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.82 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.81 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.8 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.78 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.75 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.75 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.74 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.71 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.69 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.67 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.63 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.56 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.54 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.53 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.51 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.47 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.46 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.45 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.43 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.38 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.38 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.37 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.36 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.34 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.32 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.26 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.26 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.25 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.24 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.23 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.19 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.19 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.17 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.17 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.16 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.16 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.16 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.14 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.13 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.12 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.1 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.1 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.09 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.08 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.08 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.07 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.06 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.06 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.05 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.04 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.03 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 98.03 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.02 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.99 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.92 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.92 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.88 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.87 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.86 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.86 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.84 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.83 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.82 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.81 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.81 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.79 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.79 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.78 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.77 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.77 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.76 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.7 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.7 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.69 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 97.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.67 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.66 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.66 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.65 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.65 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.64 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.64 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.64 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.63 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.63 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.61 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.61 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.57 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.55 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.53 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.53 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.53 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.53 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.5 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.48 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.48 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.48 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.48 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.44 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.44 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.41 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.41 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.38 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.38 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.38 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.37 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.36 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.33 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.32 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.3 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.29 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.28 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.26 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.26 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.21 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.21 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.19 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.19 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.18 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.16 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.15 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.12 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.09 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.07 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.06 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.05 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.02 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.01 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.99 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 96.98 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 96.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.97 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.89 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.89 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.85 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.84 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.84 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.8 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.79 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.78 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.77 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.76 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.72 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 96.64 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.59 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.59 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.55 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.46 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.46 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.44 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.36 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.35 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.31 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.29 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.29 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.24 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.04 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.99 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.78 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.76 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.41 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 95.07 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 94.87 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 94.78 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 94.7 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 94.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.48 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.24 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 93.85 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 93.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 93.71 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 93.35 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 92.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.58 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 92.19 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.39 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 90.73 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 89.44 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 87.22 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 86.89 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 84.42 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 84.16 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 82.09 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 80.15 |
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=249.90 Aligned_cols=259 Identities=25% Similarity=0.396 Sum_probs=208.4
Q ss_pred CCCCCcceEEEcCCCC-EEEEecCCeEEEEE-C-CeeeEE------------------------------E-ec-CCeEE
Q 018144 76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-D-GTWVNW------------------------------K-FI-DSHLI 120 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~-g~~~~~------------------------------~-~~-~g~L~ 120 (360)
+.+..||++++|++|+ +|+++.+|+|++++ + ++++.+ . .. +|+||
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 5578999999999998 88888899999998 4 333322 2 22 68999
Q ss_pred EEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC
Q 018144 121 ICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN 197 (360)
Q Consensus 121 v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg 197 (360)
|++..+++++++ .++ ++.+.....+..+..|+++++|+ +|+|||+|...++..+.+...+.+....++|+++|++++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 999888999999 446 77776555555667899999999 999999998765655544444555566789999999888
Q ss_pred eEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhH
Q 018144 198 ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARR 277 (360)
Q Consensus 198 ~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~ 277 (360)
+++.+..++..||||++++||+.+||+++..++|++|++++...+..+.+.+ .++ |+++++|++|+|||++...++.+
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc
Confidence 8887777788999999999999999999988999999998766666666654 567 99999999999999997633211
Q ss_pred HHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEE
Q 018144 278 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKV 357 (360)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~ 357 (360)
| .....+.|.+++++|+.+..+..++|..+..++++.+.+++||+++..+++|.++
T Consensus 254 -----------------~-------~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 254 -----------------M-------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp -----------------T-------TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEE
T ss_pred -----------------c-------cCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEE
Confidence 0 0112468999999999999999998876778888888899999999999999999
Q ss_pred eCC
Q 018144 358 QLS 360 (360)
Q Consensus 358 ~l~ 360 (360)
+++
T Consensus 310 ~~~ 312 (322)
T 2fp8_A 310 VYD 312 (322)
T ss_dssp EC-
T ss_pred ecc
Confidence 874
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=226.38 Aligned_cols=264 Identities=20% Similarity=0.297 Sum_probs=193.8
Q ss_pred ccceEecCCCCCCcceEEEcCCCCEEEEe-------------cCCeEEEEE-C---CeeeEEEe----------------
Q 018144 68 QDFIKVGEGSVNHPEDASMDKNGVIYTAT-------------RDGWIKRLQ-D---GTWVNWKF---------------- 114 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~-------------~~G~I~~~~-~---g~~~~~~~---------------- 114 (360)
.+++.|. +...+||+|+++++|.+|+++ .+|.|++++ + ++.+.+..
T Consensus 40 ~~C~~i~-~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~ 118 (355)
T 3sre_A 40 PNCNLVK-GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS 118 (355)
T ss_dssp SCEEECT-TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEE
T ss_pred CCCEEeC-CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeE
Confidence 3566674 445799999999999999997 689999999 4 23222211
Q ss_pred ----cCC--eEEEEeCCC-----cEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccc-eeccc
Q 018144 115 ----IDS--HLIICDNAN-----GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY-CLDIL 181 (360)
Q Consensus 115 ----~~g--~L~v~~~~~-----gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~-~~~~~ 181 (360)
.+| +|||+++.. ++++++.++ ...+.....+.+++.||+++++++|.+|+|+..+ |....+ ..+.+
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~ 197 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMH 197 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHH
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhh
Confidence 123 599998774 377888555 5556666677888999999999999999998752 111100 11122
Q ss_pred ccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCCCCceeEE
Q 018144 182 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 182 ~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~i~~ 260 (360)
++.+.|+|++||+ ++++.+.+++.+||||+++||++.+||+++..++|++|+++.. +.+..+.+ ..++.|||+++
T Consensus 198 ~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~v 273 (355)
T 3sre_A 198 LGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISV 273 (355)
T ss_dssp TTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEE
T ss_pred ccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEE
Confidence 3456789999998 4677788889999999999999999999999999999998742 34455566 35789999999
Q ss_pred cC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC----CCCcEEEEEeCCCCCccccee
Q 018144 261 AP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA----EDGTIIRNLVDPTGQLMSFVT 335 (360)
Q Consensus 261 d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~----~~g~~~~~~~~~~g~~~~~~t 335 (360)
|. +|++|++....... +..--|. ......|.++. +++++.+.|.+ +|..+...|
T Consensus 274 D~e~G~lwva~~~~g~~-------------v~~~~P~-------~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T 332 (355)
T 3sre_A 274 DPVTGDLWVGCHPNGMR-------------IFFYDAE-------NPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGST 332 (355)
T ss_dssp CTTTCCEEEEEESCHHH-------------HHSCCTT-------SCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEE
T ss_pred eCCCCcEEEEecCCceE-------------EEEECCC-------CCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeE
Confidence 99 59999987532111 1111121 11245778886 47888889988 898899999
Q ss_pred eEEEECCEEEEEeCCCCeEEEEeC
Q 018144 336 SGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 336 ~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.+.+.+|+||+|++..+ +..|+|
T Consensus 333 ~a~~~~g~L~iGsv~~~-~l~c~~ 355 (355)
T 3sre_A 333 VAAVYKGKLLIGTVFHK-ALYCDL 355 (355)
T ss_dssp EEEEETTEEEEEESSSC-EEEEEC
T ss_pred EEEEECCEEEEEEcCCC-ceeccC
Confidence 99999999999999888 666664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-24 Score=195.75 Aligned_cols=243 Identities=16% Similarity=0.240 Sum_probs=182.4
Q ss_pred ceEecCCCCCCcceEEEcCCCC-EEEEe-cCCeEEEEE-CCeeeEEE-----------ecCCeEEEEeCC-CcEEEEcCC
Q 018144 70 FIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ-DGTWVNWK-----------FIDSHLIICDNA-NGLHKVSED 134 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~-~g~~~~~~-----------~~~g~L~v~~~~-~gl~~~~~~ 134 (360)
.+++..+ +.-+|+.+++++|. ||+.+ .+++|++++ +|+.+.+. ..+|+||+++.. .+|.+++.+
T Consensus 37 ~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 37 LLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred eEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 3556655 57899999999887 55555 889999999 77654432 246889999876 689999966
Q ss_pred C-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCcc-ce-ecccccCCccEEEEEcCCCCeEEEEeCCCcCcce
Q 018144 135 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE-YC-LDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211 (360)
Q Consensus 135 g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~-~~-~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~png 211 (360)
| ++.+.....+..++.|++++++++|++||||+. |+... +. .........++|+++|+++++++.+. .+..|||
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g 192 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG 192 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence 8 777766556666778999999999999999864 11100 00 00001123468999999888888777 7889999
Q ss_pred EEEecCCCEEEEEeCCC-----CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchh
Q 018144 212 VALSRDEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL 286 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~-----~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~ 286 (360)
+++++|++.||++++.. ++|++|++++......+.+.+...+.|+++++|++|+||+++..
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-------------- 258 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-------------- 258 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS--------------
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC--------------
Confidence 99999999999999863 78999998754444445555445678999999999999999843
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE--ECCEEEEEeCCCCeEEEEeC
Q 018144 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l 359 (360)
+|.+++++|+.+..+..+.+ ++.+.+ ++++||+++. +.|.++++
T Consensus 259 ----------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 259 ----------------------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp ----------------------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred ----------------------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 79999999999999887653 444555 3478999985 57877765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-22 Score=181.98 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=176.2
Q ss_pred eEecCCCCCCcceEEEcCCCC-EE-EEecCCeEEEEE-CCeeeEEE-----------ecCCeEEEEeCC-CcEEEEc-CC
Q 018144 71 IKVGEGSVNHPEDASMDKNGV-IY-TATRDGWIKRLQ-DGTWVNWK-----------FIDSHLIICDNA-NGLHKVS-ED 134 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~-l~-v~~~~G~I~~~~-~g~~~~~~-----------~~~g~L~v~~~~-~gl~~~~-~~ 134 (360)
+.+..+ +..||++++|++|. || ++..+++|++++ ++..+.+. ..+|+||+++.. .++.+++ .+
T Consensus 21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 445544 68899999999997 55 555889999999 44343332 247889999976 6899999 58
Q ss_pred C-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCC-CCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceE
Q 018144 135 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKY-LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 212 (360)
Q Consensus 135 g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngi 212 (360)
| ++.+.....+.....++++++|++|++|+||+.... ...... ........++|++++++ +++..+...+..|+|+
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi 177 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY-GGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGL 177 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS-CCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc-cccccCCCcEEEEECCC-CCEEEeecCCCCCccE
Confidence 8 776654444555668999999999999999863100 000000 00001124689999998 8887777788899999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEEecC-CcC-cceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 213 ALSRDEDYVVVCESWKFRCRKYWLKG-ERK-GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 213 a~~~dg~~l~v~~t~~~~i~~~~~~g-~~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
++++||+.+ ++++..++|++|+++. .+. .....+ ....+.|+++++|++|++|+++ .
T Consensus 178 ~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~------------------ 236 (296)
T 3e5z_A 178 AFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G------------------ 236 (296)
T ss_dssp EECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T------------------
T ss_pred EECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C------------------
Confidence 999999977 9999889999999862 233 334455 4456689999999999999999 4
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--C-CEEEEEeCCCCeEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~Lylgs~~~~~i~~~~l 359 (360)
++|.+++++|+.+..+..+.+ ++++.+. + +.||+++. +.|.++++
T Consensus 237 -----------------~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~ 284 (296)
T 3e5z_A 237 -----------------DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIET 284 (296)
T ss_dssp -----------------TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEEC
T ss_pred -----------------CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEc
Confidence 489999999999988887654 4555553 3 58999985 57888875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-22 Score=182.63 Aligned_cols=235 Identities=13% Similarity=0.138 Sum_probs=173.6
Q ss_pred eEecCCCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeEE---------E-ecCCeEEEEeCCCcEEEEc-CCC
Q 018144 71 IKVGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNW---------K-FIDSHLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~~---------~-~~~g~L~v~~~~~gl~~~~-~~g 135 (360)
+.+......-+|+.++++ ++.||+.+ .+++|++++ +++...+ . ..+|+||++. ..++++++ .++
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT
T ss_pred EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCC
Confidence 334444467899999997 67888888 788999999 4443322 1 2467899987 67999999 677
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 214 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~ 214 (360)
++.+.....+.....++++++|++|++|+++....... .......++|++++++ ++...+...+..|||+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~------~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP------AVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDW 156 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT------TBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc------ccccCCCcEEEEEECC-CCEEEEeeccccccceEE
Confidence 77765544444456799999999999999875421000 0011245789999986 667666677889999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEec--CCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~--g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
++|++.+|++++..++|++|+++ .......+.+.+. ..+.|+++++|++|+||++...
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------------------ 218 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------------------ 218 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------------------
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------------------
Confidence 99999999999988999999974 2233333444322 2357999999999999999986
Q ss_pred HHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeCCC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTS 351 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~~~ 351 (360)
.+.|.+++++ |+.+..+..+.. .++++.+.+ ++||+++...
T Consensus 219 ----------------~~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 219 ----------------GGRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ----------------TTEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred ----------------CCEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence 3579999997 999988887643 477777752 6899998754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=178.76 Aligned_cols=248 Identities=21% Similarity=0.291 Sum_probs=178.2
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEE-------e-cCCeEEEEE--CCeeeEEE----------------ecC-CeEEEEe
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTA-------T-RDGWIKRLQ--DGTWVNWK----------------FID-SHLIICD 123 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~-------~-~~G~I~~~~--~g~~~~~~----------------~~~-g~L~v~~ 123 (360)
+.+..+ +..|+++++|++|.||++ + .+++|++++ +|+...+. ..+ |+|||++
T Consensus 11 ~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~ 89 (314)
T 1pjx_A 11 TKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD 89 (314)
T ss_dssp EEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred hhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE
Confidence 445544 789999999999999999 4 788999998 56543321 135 8999999
Q ss_pred CCCcEEEEcCCC-eEEE-eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 124 NANGLHKVSEDG-VENF-LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 124 ~~~gl~~~~~~g-~~~l-~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
...++++++.+| ++.+ .....+.....++++++|++|++|+++.........+. .......++|+++|++ ++.+.
T Consensus 90 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 90 MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCEEE
T ss_pred CCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--ccccCCCCeEEEECCC-CCEEE
Confidence 878999999438 6655 43323334467999999999999999864210000000 0012234789999987 77776
Q ss_pred EeCCCcCcceEEEe----cCCCEEEEEeCCCCEEEEEEecC-CcCcceeeeccC--CC-CCCceeEEcCCCCEEEEEecC
Q 018144 202 VADGFYFANGVALS----RDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAEN--LP-GAPDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 202 ~~~~l~~pngia~~----~dg~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~~--~~-g~pd~i~~d~~G~lwva~~~~ 273 (360)
+...+..|++++++ +||+.+|++++..++|++|+.++ .+....+.+... .. +.|+++++|++|++|++...
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~- 245 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG- 245 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-
Confidence 66667789999999 99988999998889999999752 222222233221 11 56899999999999999875
Q ss_pred chhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEE-CC-EEEEEeCC
Q 018144 274 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLT 350 (360)
Q Consensus 274 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~-~g-~Lylgs~~ 350 (360)
.+.|.+++++ |+.+..+..+. ..++++..+ +| .||+++..
T Consensus 246 ---------------------------------~~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 246 ---------------------------------SSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp ---------------------------------TTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEETT
T ss_pred ---------------------------------CCEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEeCC
Confidence 3589999998 88777776543 356777765 45 49999999
Q ss_pred CCeEEEEeCC
Q 018144 351 SNFIGKVQLS 360 (360)
Q Consensus 351 ~~~i~~~~l~ 360 (360)
++.|.+++++
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 8999998763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=166.18 Aligned_cols=213 Identities=19% Similarity=0.229 Sum_probs=158.5
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE-CCeeeEE----------E-ecCCeEEEEeCCC-c--EEEEc-CCC-eEEEe
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNW----------K-FIDSHLIICDNAN-G--LHKVS-EDG-VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~~----------~-~~~g~L~v~~~~~-g--l~~~~-~~g-~~~l~ 140 (360)
..||++++|++|+||+++ .+++|++++ +++...+ . ..+|+|||++... + +++++ ++| ++.+.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 689999999999999999 789999999 6654322 1 2468899999652 3 88888 777 76664
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-----------eCCCcCc
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----------ADGFYFA 209 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-----------~~~l~~p 209 (360)
.... ..++++++..+++.+|++|.. .++|+++|+.+++.+.. ...+..|
T Consensus 112 ~~~~---~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 112 TLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp ECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred eCCC---ccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 4321 346788888888899998753 47899999876543322 1245689
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecC-CcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 288 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r 288 (360)
||| ++|++.||++++..++|++|++++ .+.+..+.+.+. ..|++|++|++|++||+...
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~---------------- 231 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI---------------- 231 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT----------------
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC----------------
Confidence 998 888889999999999999999975 334445555432 46999999999999999986
Q ss_pred HHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE----C-CEEEEEeCCC
Q 018144 289 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV----D-NHLYVISLTS 351 (360)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~----~-g~Lylgs~~~ 351 (360)
.+.|.+++++|+.......+.+ ...++++... + ++||+++..+
T Consensus 232 ------------------~~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 232 ------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------------------CCeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence 3689999999987543332222 3467888774 3 7999998753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-19 Score=164.70 Aligned_cols=231 Identities=18% Similarity=0.180 Sum_probs=169.3
Q ss_pred ceEecCCCCCCcceEEEcCC-CCEEEEe-cCCeEEEEE--CCeeeEEE----------ecCCeEEEEeCCCcEEEEc-CC
Q 018144 70 FIKVGEGSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ--DGTWVNWK----------FIDSHLIICDNANGLHKVS-ED 134 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~-G~l~v~~-~~G~I~~~~--~g~~~~~~----------~~~g~L~v~~~~~gl~~~~-~~ 134 (360)
.+.+......-+|+.+++++ +.+|+.+ .+++|++++ +++...+. ..+|++|+++ ..|+++++ .+
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~ 118 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTAT 118 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTT
T ss_pred eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCC
Confidence 45666655677999999985 6777776 788999999 45443221 3478899987 57899999 67
Q ss_pred C-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEE
Q 018144 135 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 213 (360)
Q Consensus 135 g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia 213 (360)
| ++.+.....+.....++++++|++|++|+++.... .....++|++++ +++++.+......+|+++
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPNSIC 185 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe--CCcEEEeeCCCcccCCeE
Confidence 7 76664332223345789999999999999864310 012357899999 488776666667899999
Q ss_pred EecCCCEEEEEeCCCCEEEEEEec--CC-cCcceeeecc--CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLK--GE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 288 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~--g~-~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r 288 (360)
+++||+.+|++++..++|++|+.+ .. .....+.+.. ...+.|+++++|++|++|+++..
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~---------------- 249 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---------------- 249 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----------------
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----------------
Confidence 999999999999988899999985 32 3332333322 13457999999999999999875
Q ss_pred HHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--C-CEEEEEeCCCC
Q 018144 289 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSN 352 (360)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~Lylgs~~~~ 352 (360)
.++|.+++++|+.+..+..+.. .++++.+. + +.||+++....
T Consensus 250 ------------------~~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 250 ------------------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ------------------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred ------------------CCEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence 2589999999998888876542 47777765 3 68999987664
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-19 Score=160.26 Aligned_cols=222 Identities=14% Similarity=0.267 Sum_probs=164.4
Q ss_pred CCCCCcceEEEcCCCCEEEEe-cCCeEEEEE-CCeee-----------------EEEe--cCCeEEEEeC--CCcEEEEc
Q 018144 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWV-----------------NWKF--IDSHLIICDN--ANGLHKVS 132 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~-----------------~~~~--~~g~L~v~~~--~~gl~~~~ 132 (360)
+.+..|.++++|++|.+|+++ .+++|.+++ +|+.. .+.. .+|+|||++. ...+.+++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 457899999999999999997 678999998 65321 1222 4788999985 56788888
Q ss_pred CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcC
Q 018144 133 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYF 208 (360)
Q Consensus 133 ~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~ 208 (360)
.+| .+.+. ......|++|+++++|++|+++.. .++|+++|++......+. ..+..
T Consensus 107 ~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 107 QYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEF 165 (286)
T ss_dssp TTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSS
T ss_pred CCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCC
Confidence 666 33331 122356899999999999998754 468999998744444443 34668
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhH
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 287 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~ 287 (360)
|++++++++|+ +|++++..++|.+|+.++.. ...+... ....|.++++|++|++||+...
T Consensus 166 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~--------------- 226 (286)
T 1q7f_A 166 PNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNH--------------- 226 (286)
T ss_dssp EEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECS---------------
T ss_pred cEEEEECCCCC-EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCC---------------
Confidence 99999999986 99999888899999986642 2223211 1236899999999999999876
Q ss_pred HHHHHhCCccccccccCCCce-EEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 288 KHVLAAYPKLFSQFITLGGGA-HLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+ .|.+++++|+.+..+....+ ...+.++..+ +|+||+++. ++.|.++++
T Consensus 227 -------------------~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 227 -------------------NNFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRY 278 (286)
T ss_dssp -------------------SSCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred -------------------CCEEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence 23 89999999998888765332 2345667666 599999974 789988875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=173.28 Aligned_cols=227 Identities=11% Similarity=0.117 Sum_probs=167.3
Q ss_pred CCCCcceEEEcC---CCCEEEEecCCeEEEEE--CCeeeEEE-----------ecCCeEEEEeCC-----CcEEEEcCCC
Q 018144 77 SVNHPEDASMDK---NGVIYTATRDGWIKRLQ--DGTWVNWK-----------FIDSHLIICDNA-----NGLHKVSEDG 135 (360)
Q Consensus 77 ~~~~Pe~i~~d~---~G~l~v~~~~G~I~~~~--~g~~~~~~-----------~~~g~L~v~~~~-----~gl~~~~~~g 135 (360)
.+..|++|++|+ +|+||+++..++|++++ +|++..+. ..+|+|||++.. .+++.++.++
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 578999999997 49999999658999999 66655432 235679999973 3677777333
Q ss_pred -eE---EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-EEEeC--CCc
Q 018144 136 -VE---NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD--GFY 207 (360)
Q Consensus 136 -~~---~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-~~~~~--~l~ 207 (360)
+. .+. .+..|+++++|+ +|+|||+|.. .++|+++|++++++ +.+.. ...
T Consensus 217 ~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 217 GFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp TTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCS
T ss_pred Ceecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCC
Confidence 22 221 246799999999 8999998754 56899999987876 33322 234
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeeccC--CC------------CCCceeEE---------cC
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN--LP------------GAPDNINL---------AP 262 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~~~--~~------------g~pd~i~~---------d~ 262 (360)
.+++++++++|+.||++++.+++|++++.++. .......+... .. ..|.++++ |.
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 56689999999999999999999999998642 22222222211 11 24888999 99
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCC--------CC-----C
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----Q 329 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~g-----~ 329 (360)
+|+|||+... ...|.+++++|.+....... +| .
T Consensus 354 ~g~lyvaD~~----------------------------------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~ 399 (433)
T 4hw6_A 354 EYDFYFCDRD----------------------------------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQA 399 (433)
T ss_dssp CEEEEEEETT----------------------------------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTC
T ss_pred CCcEEEEECC----------------------------------CCEEEEECCCCCEEEEEeCCCCCccccCCCcccccc
Confidence 9999999986 35899999999776655331 12 1
Q ss_pred cccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 330 LMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 330 ~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+..+.++..+ +|+||++...+++|.++.++
T Consensus 400 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 400 LFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp BCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 35678888888 59999999999999999875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-19 Score=156.21 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=158.5
Q ss_pred CcceEEEcCCCCEEE-Ee-cCCeEEEEE-CC-eeeE-----------EE-ecCCeEEEEeCCCcEEEEcCCC--eEEEee
Q 018144 80 HPEDASMDKNGVIYT-AT-RDGWIKRLQ-DG-TWVN-----------WK-FIDSHLIICDNANGLHKVSEDG--VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v-~~-~~G~I~~~~-~g-~~~~-----------~~-~~~g~L~v~~~~~gl~~~~~~g--~~~l~~ 141 (360)
.|++|++|++|+||+ ++ .+++|++++ ++ .... +. ..+|+|||++..+++++++.++ ...+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~- 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP- 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeee-
Confidence 999999999999999 85 678999998 33 2111 11 2367899999866798998544 43321
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~~ 220 (360)
...+..|++|+++++|++|++|.. .++|++++..+...... ...+..|++++++++|+
T Consensus 104 ---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~- 162 (270)
T 1rwi_B 104 ---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN- 162 (270)
T ss_dssp ---CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-
T ss_pred ---cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-
Confidence 112356899999999999998753 46899998765443332 23456899999999997
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
+|+++...++|.+|+.++... ..........|.+|++|++|++|++...
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~---------------------------- 211 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHN---------------------------- 211 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETT----------------------------
T ss_pred EEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECC----------------------------
Confidence 999998888999999865421 1111111146899999999999999875
Q ss_pred cccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeCC
Q 018144 301 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.|.++++++........ .+ ...+.++..+ +|+||+++..+++|.+++++
T Consensus 212 ------~~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 212 ------TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp ------TSCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred ------CCcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 3579999998875544322 22 3467788776 58999999999999999864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-18 Score=162.06 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=164.7
Q ss_pred CCCCcceEEEcCCCCEEEEe-cCCeEEEEE-C-CeeeEEEe-----------cCCeEEEEeCCC--cEEEEc-CCC-e-E
Q 018144 77 SVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-D-GTWVNWKF-----------IDSHLIICDNAN--GLHKVS-EDG-V-E 137 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~-g~~~~~~~-----------~~g~L~v~~~~~--gl~~~~-~~g-~-~ 137 (360)
.+..|.+|++|++|+||+++ .+++|.+++ + +....+.. .++.||+++... .++.++ ..+ . .
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 47899999999999999999 568999999 4 55554432 134688888754 688888 444 3 2
Q ss_pred EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE----eCCC--cCcc
Q 018144 138 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGF--YFAN 210 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~----~~~l--~~pn 210 (360)
.+.. ........|+++++++ +|+||++|. .++|+++|++++....+ ..+. ..|.
T Consensus 209 ~~g~-~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 209 RIGQ-LGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EEEE-CCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred Eeee-ccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 3311 1111246789999999 789999753 36899999987776554 2222 2244
Q ss_pred -eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCC--------------CCCCceeEEcCCCCEEEEEe-cCc
Q 018144 211 -GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--------------PGAPDNINLAPDGTFWIAII-KLD 274 (360)
Q Consensus 211 -gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~--------------~g~pd~i~~d~~G~lwva~~-~~~ 274 (360)
++++++++..||++++..++|++++.++. ...+.... -..|.+|++|++|+|||+.. .
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-- 343 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-- 343 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT--
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC--
Confidence 99999976689999999999999998763 11221110 12599999999999999987 6
Q ss_pred hhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC------CC----CcccceeeEEEEC-C
Q 018144 275 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP------TG----QLMSFVTSGLQVD-N 342 (360)
Q Consensus 275 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~------~g----~~~~~~t~~~~~~-g 342 (360)
...|.+++ ++|++......+ +| ..+..+.++..+. |
T Consensus 344 --------------------------------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 344 --------------------------------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp --------------------------------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred --------------------------------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 36899999 788766554431 11 1256788888874 9
Q ss_pred EEEEEeCCCCeEEEEeCC
Q 018144 343 HLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 343 ~Lylgs~~~~~i~~~~l~ 360 (360)
+||++...+++|.++.+|
T Consensus 392 ~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEESTTCEEEEEEEC
T ss_pred CEEEEECCCCeEEEEEeC
Confidence 999999999999999875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-18 Score=151.98 Aligned_cols=220 Identities=16% Similarity=0.226 Sum_probs=164.1
Q ss_pred CCCCcceEEEcCCCCEEEEe-cCCeEEEEE-CCeeeEEE-------------ecCCeEEEEeCC-CcEEEEcCCC-eEEE
Q 018144 77 SVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWK-------------FIDSHLIICDNA-NGLHKVSEDG-VENF 139 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~~~-------------~~~g~L~v~~~~-~gl~~~~~~g-~~~l 139 (360)
....|++|++|++|.||+++ .+++|.+++ ++++..+. ..+|+||+++.. +++++++.+| ++.+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~ 97 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEY 97 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence 36899999999999999999 578999998 65544321 246889999875 5688998557 6544
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~d 217 (360)
..... ...|++++++++|++|+++.. .++|+++|++ ++...+. .....|++++++++
T Consensus 98 ~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 98 PLPQP---DSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp ECSST---TCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred cCCCC---CCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence 32211 246899999999999998643 4689999998 7765442 24568999999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
|+ +|+++...++|++|+.++. ...+. ......|.++++|++|++|++...
T Consensus 157 g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------------------------ 207 (300)
T 2qc5_A 157 NA-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIM------------------------ 207 (300)
T ss_dssp SS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETT------------------------
T ss_pred CC-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccC------------------------
Confidence 98 9999988889999987442 22221 112236899999999999999875
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 297 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|.+++++|+... +..+.+ ...+.++..+ +|+||+++..++.|.+++.
T Consensus 208 ----------~~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 208 ----------GNKIGRITTTGEISE-YDIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ----------TTEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ----------CCEEEEEcCCCcEEE-EECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 358999999887654 333322 3457778777 5899999999999998864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-18 Score=158.90 Aligned_cols=235 Identities=20% Similarity=0.249 Sum_probs=166.2
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEE------------ecCCeEEEEeCCC-----cEEEEc-CCC-
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK------------FIDSHLIICDNAN-----GLHKVS-EDG- 135 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~------------~~~g~L~v~~~~~-----gl~~~~-~~g- 135 (360)
...|+++++|++|.||+++ .+++|++++ +++...+. ..+|+||+++... ++++++ .++
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 5789999999999999865 788999998 45443321 2468899998654 899999 555
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEe
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 215 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~ 215 (360)
++.+.... .....+++++++++|++|+++.... .....++|+++|+++++++.+......+++++++
T Consensus 124 ~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 190 (333)
T 2dg1_A 124 LQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS 190 (333)
T ss_dssp CEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred EEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEEC
Confidence 55332211 1124689999999999999875310 0112468999999877777665566779999999
Q ss_pred cCCCEEEEEeCCCCEEEEEEec--CCcCcce--eeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 216 RDEDYVVVCESWKFRCRKYWLK--GERKGKL--ETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~--g~~~~~~--~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
+||+.+|++++..++|++|+.+ +...... ..+... ....|+++++|++|++|+++..
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------------------ 252 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------------------ 252 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------------------
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------------------
Confidence 9999999999878899999985 2222111 111111 1136899999999999999865
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC--cccceeeEEEE-C-CEEEEEeCCC-----CeEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQV-D-NHLYVISLTS-----NFIGKVQL 359 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~--~~~~~t~~~~~-~-g~Lylgs~~~-----~~i~~~~l 359 (360)
.+.|.+++++|+.+..+..+... .+..++++... + ++||+++..+ ..|.++++
T Consensus 253 ----------------~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 253 ----------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp ----------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ----------------CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 35899999999988888765320 01245666664 3 6899998774 36666654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-18 Score=151.74 Aligned_cols=217 Identities=14% Similarity=0.171 Sum_probs=160.5
Q ss_pred CCCcceEEEcCCCCEEEEec-CCeEEEEE-CCeeeEEE-------------ecCCeEEEEeCC-CcEEEEcCCC-eEEEe
Q 018144 78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWK-------------FIDSHLIICDNA-NGLHKVSEDG-VENFL 140 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~g~~~~~~-------------~~~g~L~v~~~~-~gl~~~~~~g-~~~l~ 140 (360)
...|.+|++|++|++|+++. +++|++++ +|+...+. ..+|+||+++.. .++++++.+| +..+.
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 140 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYD 140 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEcc
Confidence 47899999999999999984 78899998 76544332 236889999874 5788998557 55442
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDE 218 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg 218 (360)
.. .....|+++++|++|++|+++.. .++|+++|+ +++...+. .....|.+++++++|
T Consensus 141 ~~---~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 141 LP---NKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG 199 (300)
T ss_dssp CS---STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred CC---CCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC
Confidence 11 12356899999999999998743 468999998 57665543 345679999999998
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
+ +|+++...++|.+|+.++. ...+. ......|.++++|++|++|+++..
T Consensus 200 ~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------------------------- 249 (300)
T 2qc5_A 200 A-LWFVEIMGNKIGRITTTGE----ISEYDIPTPNARPHAITAGKNSEIWFTEWG------------------------- 249 (300)
T ss_dssp S-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECSTTCEEEEETT-------------------------
T ss_pred C-EEEEccCCCEEEEEcCCCc----EEEEECCCCCCCceEEEECCCCCEEEeccC-------------------------
Confidence 6 9999988889999987442 22221 112235889999999999999865
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 298 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|.+++++|+.. .+..+.+ ...+.++..+ +|+||+++. + .|.+++.
T Consensus 250 ---------~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ---------ANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ---------TTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ---------CCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 35899999988654 4544433 2356777776 599999998 6 8988864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-17 Score=148.23 Aligned_cols=220 Identities=15% Similarity=0.242 Sum_probs=162.6
Q ss_pred CCCCcceEEEcCCCCEEEEec-CCeEEEEE-CCeeeEEE-------------ecCCeEEEEeCC-CcEEEEcCCC-eEEE
Q 018144 77 SVNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWK-------------FIDSHLIICDNA-NGLHKVSEDG-VENF 139 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~g~~~~~~-------------~~~g~L~v~~~~-~gl~~~~~~g-~~~l 139 (360)
....|.+|++|++|++|+++. ++.|++++ ++++..+. ..+|+||+++.. .++++++.++ ++.+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~ 92 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEY 92 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence 357899999999999999995 78899998 66544322 246889999874 5688998657 6554
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~d 217 (360)
.... ....|++++++++|++|+++.. .++|+++|+ +++...+. .....|++++++++
T Consensus 93 ~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 93 TLPN---PDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp ECSS---TTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred eCCC---cCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence 3211 2346899999999999998643 468999999 57666543 24567999999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeee-ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~-~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
|+ +|+++...++|++++.++ ....+ .......|.++++|++|++|++...
T Consensus 152 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------------------------ 202 (299)
T 2z2n_A 152 NA-LWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEII------------------------ 202 (299)
T ss_dssp SC-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETT------------------------
T ss_pred CC-EEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccC------------------------
Confidence 96 899988778999998733 22222 1112235889999999999999865
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 297 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|.+++++|+.. .+..+.. ...+.++..+ +|+||+++..++.|.+++.
T Consensus 203 ----------~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 ----------GNKIGRITTSGEIT-EFKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ----------TTEEEEECTTCCEE-EEECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ----------CceEEEECCCCcEE-EEECCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 25899999977754 3544322 3457778776 5899999998999998874
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=164.56 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=165.2
Q ss_pred CCCCcceEEEcC--CCCEEEEecCCeEEEEE-CC-eeeEEE-----------ecCCe-EEEEeCCC-----cEEEEcCCC
Q 018144 77 SVNHPEDASMDK--NGVIYTATRDGWIKRLQ-DG-TWVNWK-----------FIDSH-LIICDNAN-----GLHKVSEDG 135 (360)
Q Consensus 77 ~~~~Pe~i~~d~--~G~l~v~~~~G~I~~~~-~g-~~~~~~-----------~~~g~-L~v~~~~~-----gl~~~~~~g 135 (360)
.+..|.+|++|+ +|+||+++..++|.+++ ++ .+..+. ..+|+ |||++... .++.++.+|
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 478999999995 69999999668999999 44 444321 12444 99999742 455666544
Q ss_pred -eE---EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcC
Q 018144 136 -VE---NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYF 208 (360)
Q Consensus 136 -~~---~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~ 208 (360)
+. .+. .+..|+++++++ +|+||++|.. .++|++++++++....+. .....
T Consensus 215 ~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 215 GFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp TSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSC
T ss_pred ceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCc
Confidence 32 222 246799999999 8999999864 568999999877663332 23467
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeeccC--------------CCCCCc-eeEE--------cCC
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN--------------LPGAPD-NINL--------APD 263 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~~~--------------~~g~pd-~i~~--------d~~ 263 (360)
|++++++++|+.|||++...++|++++.++. .......+... .-..|. ++++ |++
T Consensus 272 P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~ 351 (430)
T 3tc9_A 272 EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDE 351 (430)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCC
T ss_pred ceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCC
Confidence 9999999999999999999999999998753 11112222211 011477 7887 567
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCC--------CC-----Cc
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----QL 330 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~g-----~~ 330 (360)
|+|||+... ...|.+++++|++....... +| ..
T Consensus 352 g~lyvaD~~----------------------------------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~ 397 (430)
T 3tc9_A 352 YDFYFCDRE----------------------------------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEAR 397 (430)
T ss_dssp EEEEEEEGG----------------------------------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCB
T ss_pred CeEEEEECC----------------------------------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcE
Confidence 999999987 35899999999877666431 22 13
Q ss_pred ccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 331 MSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 331 ~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
++.+.++..+ +|+||++...+++|.++.+|
T Consensus 398 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 398 FNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred eCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 5678888887 49999999999999999875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-17 Score=149.55 Aligned_cols=218 Identities=13% Similarity=0.166 Sum_probs=160.0
Q ss_pred CCCcceEEEcCCCCEEEEec-CCeEEEEE-CCeeeEEE-------------ecCCeEEEEeCC-CcEEEEcCCC-eEEEe
Q 018144 78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWK-------------FIDSHLIICDNA-NGLHKVSEDG-VENFL 140 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~g~~~~~~-------------~~~g~L~v~~~~-~gl~~~~~~g-~~~l~ 140 (360)
...|.+|++|++|.+|+++. +++|++++ +++.+.+. ..+|+||+++.. .++++++.++ +..+.
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~ 135 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYE 135 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEec
Confidence 46899999999999999984 78899998 76544332 236889999864 5788898766 55442
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEEecCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDE 218 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~~~dg 218 (360)
... ....+++++++++|++|+++.. .++|+++|+ ++++..+ ......|++++++++|
T Consensus 136 ~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 136 LPN---KGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD 194 (299)
T ss_dssp CSS---TTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred CCC---CCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC
Confidence 211 1346899999999999998643 468999999 6777654 2345679999999998
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
+ +|+++...++|.+|+.++. ...+. ......|.++++|++|++|++...
T Consensus 195 ~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------------------------- 244 (299)
T 2z2n_A 195 A-LWFVEIIGNKIGRITTSGE----ITEFKIPTPNARPHAITAGAGIDLWFTEWG------------------------- 244 (299)
T ss_dssp S-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECSTTCEEEEETT-------------------------
T ss_pred C-EEEEccCCceEEEECCCCc----EEEEECCCCCCCceeEEECCCCCEEEeccC-------------------------
Confidence 7 8999987889999997432 22221 112246889999999999999865
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 298 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|.+++++|+ +..+..+.+ ...+.++...+|+||+++. .+.|.+++.
T Consensus 245 ---------~~~i~~~d~~g~-~~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 245 ---------ANKIGRLTSNNI-IEEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp ---------TTEEEEEETTTE-EEEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEE
T ss_pred ---------CceEEEECCCCc-eEEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEc
Confidence 358999999875 445544433 2356666666699999986 688888864
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-17 Score=150.50 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=153.9
Q ss_pred CCcceEEEcCCCCEEEEec---CC--eEEEEECCeee-----------------EEE-ecCCeEEEEeCC------CcEE
Q 018144 79 NHPEDASMDKNGVIYTATR---DG--WIKRLQDGTWV-----------------NWK-FIDSHLIICDNA------NGLH 129 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~---~G--~I~~~~~g~~~-----------------~~~-~~~g~L~v~~~~------~gl~ 129 (360)
..|++|+++++|.+|++.. +| +|+++++|+.. .+. +.+|+|||++.. ..|+
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 6899999999999999862 34 68887644332 122 236899999965 5799
Q ss_pred EEc-CCC-e-EEEeec-cCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC
Q 018144 130 KVS-EDG-V-ENFLSY-VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 204 (360)
Q Consensus 130 ~~~-~~g-~-~~l~~~-~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~ 204 (360)
+++ .+| + +.+.-. .......+++++++|+ +|.+|++|.+.. ..++|+++|+++++......
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEETTTCCEEEECT
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEEEEECCCCCEEEEec
Confidence 999 667 3 333211 1122335789999996 579999987411 13567778877666544332
Q ss_pred C------------------------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC---CcCcceeeecc--
Q 018144 205 G------------------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG---ERKGKLETFAE-- 249 (360)
Q Consensus 205 ~------------------------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g---~~~~~~~~~~~-- 249 (360)
+ ...+|||++++||+.||++++.+.+|++++.+. ......+.+..
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 1 024799999999999999999888999998531 11111111100
Q ss_pred --CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCC
Q 018144 250 --NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP 326 (360)
Q Consensus 250 --~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~ 326 (360)
...+.|+++++|++|++|++... .+.|.++++ +|+......++
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~----------------------------------~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLA----------------------------------HSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGG----------------------------------GTEEEEEETTTTEEEEEEECG
T ss_pred ecccCCCCceEEECCCCCEEEEccC----------------------------------CCeEEEEECCCCCEEEEEECC
Confidence 12347999999999999999987 468999999 88866555544
Q ss_pred CCCcccceeeEEEE-CCEEEEEeCCCC
Q 018144 327 TGQLMSFVTSGLQV-DNHLYVISLTSN 352 (360)
Q Consensus 327 ~g~~~~~~t~~~~~-~g~Lylgs~~~~ 352 (360)
. ...++++... +|+||+.+...+
T Consensus 289 ~---~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 289 K---LSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp G---GSCEEEEEECTTSCEEEEECCGG
T ss_pred c---eecCCeeEECCCCcEEEEeCccc
Confidence 2 4578888886 589999987544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=151.64 Aligned_cols=228 Identities=13% Similarity=0.123 Sum_probs=156.7
Q ss_pred CCCCcceEEEcCCCCEEEEecCC-------------------------eEEEEE--CCeeeE------------EE-ecC
Q 018144 77 SVNHPEDASMDKNGVIYTATRDG-------------------------WIKRLQ--DGTWVN------------WK-FID 116 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~~G-------------------------~I~~~~--~g~~~~------------~~-~~~ 116 (360)
.+..|.+|++|++|++|+++..+ .|++++ +|++.. +. ..+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 46789999999999999998433 699998 465432 22 247
Q ss_pred CeEEEEeCC-CcEEEEcCCC-e---EEEeec-cC---CccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCc
Q 018144 117 SHLIICDNA-NGLHKVSEDG-V---ENFLSY-VN---GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~~~g-~---~~l~~~-~~---~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
|+|||++.. +.+.+++.+| . ..+... .. ...+..|++|++++ +|+||++|+. ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~~ 165 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------CN 165 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------SC
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------CC
Confidence 889999976 4677888554 2 223211 01 23456799999999 8999999851 24
Q ss_pred cEEEEEcCCCCeEEE-Ee----------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec-CCcCcceeeecc-CCCC
Q 018144 187 GQLLKYDPSSNITTL-VA----------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAE-NLPG 253 (360)
Q Consensus 187 g~l~~~d~~tg~~~~-~~----------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~-~~~g 253 (360)
++|.++|++ |+... +. ..+..|+|+++++++..+||++..+++|.+|+.+ |... ..+.. ....
T Consensus 166 ~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~---~~~~~~~~~~ 241 (329)
T 3fvz_A 166 SRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV---REIKHASFGR 241 (329)
T ss_dssp CEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEECCTTTTT
T ss_pred CeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE---EEEeccccCC
Confidence 689999976 54433 32 1345699999999966799999999999999987 4322 12211 1111
Q ss_pred CCc------eeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC
Q 018144 254 APD------NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP 326 (360)
Q Consensus 254 ~pd------~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~ 326 (360)
.|. ++.++.+|++|++... ...|..++ .+|+++..+...
T Consensus 242 ~~~~~~~~pg~~~~~~g~~~v~~~~----------------------------------~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 242 NVFAISYIPGFLFAVNGKPYFGDQE----------------------------------PVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp CEEEEEEETTEEEEEECCCCTTCSC----------------------------------CCCEEEEETTTCCEEEEECCS
T ss_pred CcceeeecCCEEEEeCCCEEeccCC----------------------------------CcEEEEEEcCCCeEEEEEcCC
Confidence 233 4444446666655443 24677888 578888887543
Q ss_pred CCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 327 TGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 327 ~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+. +..+.++..+ +|+||+++..+++|.++++
T Consensus 288 ~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 288 RKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp SSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 332 5678888887 4899999999999999975
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=147.29 Aligned_cols=229 Identities=12% Similarity=0.128 Sum_probs=162.4
Q ss_pred CCCCCCcceEEEcC--CCCEEEEec-CCeEEEEE--CCeeeE--------------EEe--------cCC-eEEEEeCCC
Q 018144 75 EGSVNHPEDASMDK--NGVIYTATR-DGWIKRLQ--DGTWVN--------------WKF--------IDS-HLIICDNAN 126 (360)
Q Consensus 75 ~~~~~~Pe~i~~d~--~G~l~v~~~-~G~I~~~~--~g~~~~--------------~~~--------~~g-~L~v~~~~~ 126 (360)
.+.+..|..|++|+ +++||++.. +++|.+++ ++.+.. +.. .+| .|||++...
T Consensus 135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 44467899999996 589999984 56788898 444332 222 244 499998764
Q ss_pred -------cEEEEc--CCC-eE------EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 127 -------GLHKVS--EDG-VE------NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 127 -------gl~~~~--~~g-~~------~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
.++.++ .+| +. .+. .+..|+++++++ +|+||++|.. .+.|
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~V 271 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQV 271 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTEE
T ss_pred CCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCEE
Confidence 267776 334 42 232 235799999999 6799999854 5689
Q ss_pred EEEcCC-------CCeE------------EE-Ee-CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc--Ccceee
Q 018144 190 LKYDPS-------SNIT------------TL-VA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLET 246 (360)
Q Consensus 190 ~~~d~~-------tg~~------------~~-~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~--~~~~~~ 246 (360)
++||++ ++.. +. .. .....|.+|+++++|+.||++++.+++|++++.++.. ......
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~ 351 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN 351 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEE
T ss_pred EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEE
Confidence 999987 5654 12 21 2235689999999999999999999999999887632 111122
Q ss_pred eccC--CC------------CCCc-eeEEc-------CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 247 FAEN--LP------------GAPD-NINLA-------PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 247 ~~~~--~~------------g~pd-~i~~d-------~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
++.. .. ..|. ++++| .+|+|||+...
T Consensus 352 ~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-------------------------------- 399 (496)
T 3kya_A 352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-------------------------------- 399 (496)
T ss_dssp EEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG--------------------------------
T ss_pred ecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC--------------------------------
Confidence 2211 11 1477 78887 78999999987
Q ss_pred CCceEEEEECCCCcEEEEEeCC--------------CC-----CcccceeeEEEEC--CEEEEEeCCCCeEEEEeCC
Q 018144 305 GGGAHLIHVAEDGTIIRNLVDP--------------TG-----QLMSFVTSGLQVD--NHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 305 ~~~~~v~~~~~~g~~~~~~~~~--------------~g-----~~~~~~t~~~~~~--g~Lylgs~~~~~i~~~~l~ 360 (360)
..+|.+++++|.+....... +| ..++.++++..+. |.|||+...+++|.++.++
T Consensus 400 --N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 400 --NFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp --GTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred --CCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 46899999999776655321 22 1367788888873 8999999999999999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=142.23 Aligned_cols=190 Identities=11% Similarity=0.156 Sum_probs=140.2
Q ss_pred CCCcceEEEc-CCCCEEEEe-cCCeEEEEE-CCe-eeE-----------EEe--cCCeEEEEeCC-CcEEEEcCCC--eE
Q 018144 78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGT-WVN-----------WKF--IDSHLIICDNA-NGLHKVSEDG--VE 137 (360)
Q Consensus 78 ~~~Pe~i~~d-~~G~l~v~~-~~G~I~~~~-~g~-~~~-----------~~~--~~g~L~v~~~~-~gl~~~~~~g--~~ 137 (360)
+..|+++++| .++.||+++ .+++|++++ +|. .+. ++. .+++||+++.. +.|.+++.+| .+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 6789999999 588999999 788999999 552 222 222 36889999976 4677777556 44
Q ss_pred EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEe
Q 018144 138 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALS 215 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~ 215 (360)
.+.. ..+..|++|++|+ +|.||+||.. ..++|++++++....+.+. .++..|||++++
T Consensus 152 ~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d 211 (349)
T 3v64_C 152 VLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTID 211 (349)
T ss_dssp EEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEEE
T ss_pred EEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEEe
Confidence 4432 1245799999997 6799999865 1368999998754444443 468899999999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCC
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~ 295 (360)
++++.|||+++..++|.+++++|.. .+.+.....+.|++|+++ +|++|++.+.
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~----------------------- 264 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH----------------------- 264 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT-----------------------
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCC-----------------------
Confidence 9888999999999999999998732 223332334579999995 5789999887
Q ss_pred ccccccccCCCceEEEEEC-CCCcEEEEEeC
Q 018144 296 KLFSQFITLGGGAHLIHVA-EDGTIIRNLVD 325 (360)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~ 325 (360)
.+.|.+++ .+|+..+.+..
T Consensus 265 -----------~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 265 -----------TKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp -----------TTEEEEEETTTCCSCEEEEC
T ss_pred -----------CCeEEEEEccCCCccEEecc
Confidence 35888888 57776666543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-16 Score=159.48 Aligned_cols=216 Identities=14% Similarity=0.182 Sum_probs=155.4
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCeeeEE--------------------EecCCe-EEEEeCCCcEEEEc-CCC-
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW--------------------KFIDSH-LIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~--------------------~~~~g~-L~v~~~~~gl~~~~-~~g- 135 (360)
-.+|+.|++|+||+|+.+|+|++++ +++++.+ .+.+|+ |||++...||++++ .++
T Consensus 359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 4578999999999999888899998 4433222 134688 99999889999999 667
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-----C--cC
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----F--YF 208 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-----l--~~ 208 (360)
++.+...........+..+..|++|+||++. . ++|++||+++++++.+... + ..
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt------------------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGT------------------L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEE------------------S-SCEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEe------------------c-CceeEEeCCCCeEEEccccccccccCCce
Confidence 7666432111222467889999999999952 2 4799999998888765421 1 24
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCC----CceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA----PDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~----pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
.+.+..+++|+ +|++.. ++|++|+.++.+. ...... ...++ ...|..|++|+||+++..
T Consensus 500 i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~-~~~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~~------------ 562 (795)
T 4a2l_A 500 ITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI-QKASIL-PVSNVTKLFTNCIYEASNGIIWVGTRE------------ 562 (795)
T ss_dssp EEEEEECTTCC-EEEEES--SCEEEEEEETTEE-EECCCS-CSCGGGGSCEEEEEECTTSCEEEEESS------------
T ss_pred EEEEEECCCCC-EEEEeC--CceEEEeCCCCeE-EEecCC-CCCCCCCCeeEEEEECCCCCEEEEeCC------------
Confidence 56788888887 777765 4699999865432 111100 11122 345778999999999865
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
+|.+++++...+..+...+|++.+.+.++.++ +|+||+++ .+-|.+++
T Consensus 563 ------------------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~ 611 (795)
T 4a2l_A 563 ------------------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFN 611 (795)
T ss_dssp ------------------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEE
T ss_pred ------------------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEc
Confidence 79999998888888877778766778888887 59999999 45677665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-15 Score=137.01 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=154.0
Q ss_pred ceEEEcCCCCEEEEecCCeEEEEE-CCe-ee----------EEE--ecCCeEEEEeCC-CcEEEEcCCC--eEEEeeccC
Q 018144 82 EDASMDKNGVIYTATRDGWIKRLQ-DGT-WV----------NWK--FIDSHLIICDNA-NGLHKVSEDG--VENFLSYVN 144 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~G~I~~~~-~g~-~~----------~~~--~~~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~~ 144 (360)
.+.+.++++.|+++... .|.+++ +|. .+ .+. ..+++||+++.. +.|++++.+| .+.+...
T Consensus 37 ~C~~~~~~~~ll~~~~~-~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-- 113 (349)
T 3v64_C 37 SCKALGPEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-- 113 (349)
T ss_dssp CEEESSSCCEEEEECBS-CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--
T ss_pred cccccccCceeEeeccc-ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC--
Confidence 45555566777777643 488887 542 22 122 246889999976 4677888444 4444221
Q ss_pred CccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEE
Q 018144 145 GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 145 ~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~ 222 (360)
.+..|++|++|. +|+||++|.. .++|.++++++...+.+. .++..|++++++|++..||
T Consensus 114 --~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 114 --GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp --SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred --CCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence 134689999996 6799999865 458999998754444443 5688999999999877899
Q ss_pred EEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 223 VCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 223 v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
|+++.. ++|++++++|.. .+.+....-..|++|++|+ +|+||++...
T Consensus 175 ~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~---------------------------- 223 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK---------------------------- 223 (349)
T ss_dssp EEECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETT----------------------------
T ss_pred EeccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECC----------------------------
Confidence 999988 999999998742 2233222234699999995 7789999876
Q ss_pred cccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEe
Q 018144 301 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|.+++.+|...+.+.... ...+.++...+++||+++..+++|.+++
T Consensus 224 ------~~~I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 224 ------HHVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ------TTEEEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ------CCEEEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 358999998886544443322 3467777778899999999999999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-15 Score=137.96 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=141.2
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE----------------EEecCCeEEEEeC--CCcEEEEc-CCC
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN----------------WKFIDSHLIICDN--ANGLHKVS-EDG 135 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~----------------~~~~~g~L~v~~~--~~gl~~~~-~~g 135 (360)
...|++|+++++|.+|+++ .++.|.++| ++++.. +...+++|||+++ .+.+..+| .++
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC
Confidence 4789999998889999999 789999999 554331 1224678999986 46788899 666
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--CCcCcceE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGV 212 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~l~~pngi 212 (360)
+...... + ..|++++++++|++|+++...... ..+ ....+.|+++|++++++..... ....|+++
T Consensus 163 ~~~~~i~~--g---~~p~~i~~~~dG~l~v~~~~~~~~-~~~------~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 163 KVVDELTI--G---IQPTSLVMDKYNKMWTITDGGYEG-SPY------GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EEEEEEEC--S---SCBCCCEECTTSEEEEEBCCBCTT-CSS------CBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred eEEEEEEc--C---CCccceEEcCCCCEEEEECCCccC-Ccc------ccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 3322111 1 358899999999999987541000 000 0013689999999888764322 13479999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 213 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 213 a~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
++++|++.+|+++. .|+++|.+..+..... +.......|+++++|+ +|++||+....
T Consensus 231 a~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~-~~~~~~~~p~gi~vdp~~g~lyva~~~~------------------ 288 (328)
T 3dsm_A 231 QLNGTRDTLYWINN---DIWRMPVEADRVPVRP-FLEFRDTKYYGLTVNPNNGEVYVADAID------------------ 288 (328)
T ss_dssp EECTTSCEEEEESS---SEEEEETTCSSCCSSC-SBCCCSSCEEEEEECTTTCCEEEEECTT------------------
T ss_pred EEecCCCEEEEEcc---EEEEEECCCCceeeee-eecCCCCceEEEEEcCCCCeEEEEcccc------------------
Confidence 99999999999986 6999998654432211 2111134799999997 78999998210
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeC
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 325 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 325 (360)
-...+.|.+|+++|+.+..+..
T Consensus 289 ------------y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 289 ------------YQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp ------------SSSEEEEEEECTTCCEEEEEEE
T ss_pred ------------cccCCEEEEECCCCCEEEEEEe
Confidence 0014789999999999988864
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-15 Score=138.57 Aligned_cols=244 Identities=15% Similarity=0.184 Sum_probs=157.3
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE-CCeeeEE----------------Ee-c----CCeEEEEeCC---
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNW----------------KF-I----DSHLIICDNA--- 125 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~~~----------------~~-~----~g~L~v~~~~--- 125 (360)
+.+..+ +..|++|+++++|.||+++..|+|++++ +|+ +.+ .. + ++.|||+...
T Consensus 22 ~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 22 SEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp EEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred EEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 556554 7999999999999999999889999998 775 322 11 1 3689998864
Q ss_pred -----CcEEEEc-CCC------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 126 -----NGLHKVS-EDG------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 126 -----~gl~~~~-~~g------~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
..|++++ ..+ .+.+.+..+......+++|++++||+||||+...... ....+ .....|+|+|++
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~--~~~~d--~~~~~G~I~ri~ 175 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP--RLAQD--LSSLAGKILRVD 175 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG--GGGTC--TTCCSSEEEEEC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC--ccccC--CCCCCeEEEEEc
Confidence 5688887 321 2223332333334578999999999999997542110 00000 123357999999
Q ss_pred CCCC--------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE---EEEEEecCCcCcc------------eeeecc-
Q 018144 194 PSSN--------ITTLVADGFYFANGVALSRDEDYVVVCESWKFR---CRKYWLKGERKGK------------LETFAE- 249 (360)
Q Consensus 194 ~~tg--------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~---i~~~~~~g~~~~~------------~~~~~~- 249 (360)
++.. ..+.+..++..|+|++++++...||+++.+.++ |.++.. |...+. ......
T Consensus 176 ~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp TTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeec
Confidence 9743 245677788999999999943359999987654 555542 221110 001100
Q ss_pred -CCCCCCceeEE-------cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--CcE
Q 018144 250 -NLPGAPDNINL-------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTI 319 (360)
Q Consensus 250 -~~~g~pd~i~~-------d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~ 319 (360)
.....|.++++ +-+|++|++... .+.|.+++.+ |++
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----------------------------------~~~v~~~~~~~~g~~ 300 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLR----------------------------------GSMLAAVNFGDNMEV 300 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETT----------------------------------TTEEEEEEECGGGCE
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcC----------------------------------CCEEEEEEECCCCcc
Confidence 11235889998 568899999876 3577777654 444
Q ss_pred E--EEEeCCCCCcccceeeEEEE-CCEEEEEeCC-CC---------eEEEEe
Q 018144 320 I--RNLVDPTGQLMSFVTSGLQV-DNHLYVISLT-SN---------FIGKVQ 358 (360)
Q Consensus 320 ~--~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~-~~---------~i~~~~ 358 (360)
. +.+.. +. ...+..+... +|.||+.+.. .. +|.|+.
T Consensus 301 ~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~ 349 (354)
T 3a9g_A 301 RKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIV 349 (354)
T ss_dssp EEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred cceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEe
Confidence 3 22322 11 2357777776 5899999874 32 888875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-15 Score=141.85 Aligned_cols=190 Identities=10% Similarity=0.147 Sum_probs=139.8
Q ss_pred CCCcceEEEc-CCCCEEEEe-cCCeEEEEE-CCe-eeEE-----------Ee--cCCeEEEEeCCC-cEEEEcCCC--eE
Q 018144 78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGT-WVNW-----------KF--IDSHLIICDNAN-GLHKVSEDG--VE 137 (360)
Q Consensus 78 ~~~Pe~i~~d-~~G~l~v~~-~~G~I~~~~-~g~-~~~~-----------~~--~~g~L~v~~~~~-gl~~~~~~g--~~ 137 (360)
+..|+++++| .++.||+++ .+++|++++ +|. .+.+ +. .+++||+++... .|.+++.+| .+
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 6789999999 478999999 788999999 553 2222 11 367899999864 566666555 44
Q ss_pred EEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEe
Q 018144 138 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALS 215 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~ 215 (360)
.+.. ..+..|++|++|+ +|.||+||.. ..++|++++++....+.+ ..++..||||+++
T Consensus 195 ~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd 254 (386)
T 3v65_B 195 VLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTID 254 (386)
T ss_dssp EEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred Eeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEe
Confidence 4432 1245799999996 6789999865 136899999875444444 3568889999999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCC
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~ 295 (360)
++++.|||+++..++|.+++++|.. ...+.....+.|++|+++ +|++|++.+.
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~----------------------- 307 (386)
T 3v65_B 255 YAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH----------------------- 307 (386)
T ss_dssp GGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT-----------------------
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCC-----------------------
Confidence 9888999999999999999998732 223332334579999995 4689998876
Q ss_pred ccccccccCCCceEEEEEC-CCCcEEEEEeC
Q 018144 296 KLFSQFITLGGGAHLIHVA-EDGTIIRNLVD 325 (360)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~ 325 (360)
.+.|.+++ .+|+..+.+..
T Consensus 308 -----------~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 308 -----------TKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp -----------TTEEEEEETTTCCSCEEEEC
T ss_pred -----------CCeEEEEECCCCcceEEEcc
Confidence 36899998 57877666654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=155.04 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=149.7
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCeeeEE---------------------EecCCeEEEEeCCCcEEEEc-CCC-
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW---------------------KFIDSHLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~---------------------~~~~g~L~v~~~~~gl~~~~-~~g- 135 (360)
-.+|+.|++|.||+|+.+++|++++ .+.++.+ .+.+|+|||++...||++++ .++
T Consensus 315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence 4578999999999999888899987 3332221 22358899999888999999 444
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCcceE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGV 212 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~pngi 212 (360)
++.+... .......+..++.|++|+||++ +..++|+++|+++++++.+... ......+
T Consensus 395 ~~~~~~~-~~~~~~~v~~i~~d~~g~lWig------------------t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 395 AIYNKEN-RELLSNSVLCSLKDSEGNLWFG------------------TYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp EECC------CCCSBEEEEEECTTSCEEEE------------------ETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred EEEccCC-CCCCCcceEEEEECCCCCEEEE------------------eccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 4433211 1122245788999999999995 3346899999988888766431 2345677
Q ss_pred EEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CC-CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 213 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NL-PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 213 a~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~-~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
+.+++|. +|++.. .+|++|+.+..+......... .. ...+..++.|++|+||+++..
T Consensus 456 ~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~------------------ 514 (781)
T 3v9f_A 456 YEDKNKK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG------------------ 514 (781)
T ss_dssp EECTTSE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS------------------
T ss_pred EECCCCC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC------------------
Confidence 7888875 888765 579999986543322211110 01 123556889999999999974
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL 349 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~ 349 (360)
++|++++++++.+..+....+...+.+.++.++ +|+||+|+.
T Consensus 515 -----------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 515 -----------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp -----------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred -----------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 379999998888888877777666778888887 599999987
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-15 Score=134.55 Aligned_cols=201 Identities=11% Similarity=0.105 Sum_probs=142.6
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEeeccCCccccccccE
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDV 154 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~~~~~~~~~n~l 154 (360)
+..|+++++|. ++.||+++ .+++|++++ +|... +. ..+.+.. ..+..|.+|
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------~~----------------~~~~~~~----~~~~~p~gl 82 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VS----------------SYDTVIS----RDIQAPDGL 82 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CEEEEC----SSCSCCCEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------Cc----------------ccEEEEe----CCCCCcCEE
Confidence 67899999996 67899888 567888887 54210 00 0011110 112468899
Q ss_pred EEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC-CEE
Q 018144 155 VEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK-FRC 231 (360)
Q Consensus 155 ~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~-~~i 231 (360)
++|. +|+||++|.. .++|.++++++...+.+. ..+..|++++++|++..+||++... ++|
T Consensus 83 avd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp EEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 9995 6799999865 468999998755444444 4678999999999877899999875 799
Q ss_pred EEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEE
Q 018144 232 RKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHL 310 (360)
Q Consensus 232 ~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v 310 (360)
++++++|.. .+.+....-..|.+|++|+ +++||++... .+.|
T Consensus 146 ~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~----------------------------------~~~I 188 (316)
T 1ijq_A 146 KKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK----------------------------------LHSI 188 (316)
T ss_dssp EEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT----------------------------------TTEE
T ss_pred EEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECC----------------------------------CCeE
Confidence 999998742 2333322234799999996 5689999876 3589
Q ss_pred EEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 311 IHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 311 ~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.+++.+|...+.+....+ ....+.++..++++||++...+++|.+++.
T Consensus 189 ~~~d~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 189 SSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 999998865555543221 145677787788999999999999999863
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-16 Score=158.29 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=153.1
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE-C-Ceee--------------EE-EecCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ-D-GTWV--------------NW-KFIDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~-~-g~~~--------------~~-~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
..+|+.|++|.||+|+.+++|++++ . +.++ .+ .+.+|+|||++...|+++++ .++ ++.+..
T Consensus 365 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~ 444 (781)
T 3v9f_A 365 VSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIEL 444 (781)
T ss_dssp EEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCS
T ss_pred eEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEecc
Confidence 4678899999999999888899998 3 2222 11 23478999999878999999 567 665532
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC------CcCcceEEEe
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------FYFANGVALS 215 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~------l~~pngia~~ 215 (360)
. ......+..+..|++|+||++. . ++|+++|+++++++.+... ....+.++.+
T Consensus 445 ~--~~~~~~v~~i~~d~~g~lwigt------------------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 445 E--KNELLDVRVFYEDKNKKIWIGT------------------H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp T--TTCCCCEEEEEECTTSEEEEEE------------------T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred C--CCCCCeEEEEEECCCCCEEEEE------------------C-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 1 2222457789999999999952 2 5799999988877655421 2346788899
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCc----eeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD----NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd----~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
++|+ +|++... ++|++|+.++. ..+.+.. ..++|+ .|..|++|+||+++..
T Consensus 504 ~~g~-lWigt~~-~Gl~~~~~~~~---~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~------------------- 558 (781)
T 3v9f_A 504 SEGR-FWIGTFG-GGVGIYTPDMQ---LVRKFNQ-YEGFCSNTINQIYRSSKGQMWLATGE------------------- 558 (781)
T ss_dssp TTCC-EEEEESS-SCEEEECTTCC---EEEEECT-TTTCSCSCEEEEEECTTSCEEEEETT-------------------
T ss_pred CCCC-EEEEEcC-CCEEEEeCCCC---eEEEccC-CCCCCCCeeEEEEECCCCCEEEEECC-------------------
Confidence 9987 7777653 45999987543 3333321 223443 5778999999999875
Q ss_pred HhCCccccccccCCCceEE-EEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 292 AAYPKLFSQFITLGGGAHL-IHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v-~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
++ .+++++...+..+...+|++.+.+.++.++ +|+||+++.. -|.+++
T Consensus 559 -----------------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~--Gl~~~~ 608 (781)
T 3v9f_A 559 -----------------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNT--GISCYI 608 (781)
T ss_dssp -----------------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSS--CEEEEE
T ss_pred -----------------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCC--ceEEEE
Confidence 56 999998777778877778766778888887 5999999854 476665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=129.96 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=134.9
Q ss_pred CCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEeeccCCccccccccEE
Q 018144 79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVV 155 (360)
Q Consensus 79 ~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~~~~~~~~~n~l~ 155 (360)
..|+++++|+ ++.||+++ .++.|++++ +|.. .+.+.. ..+..|++|+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--------------------------~~~~~~----~~~~~p~~ia 85 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------------------------PTTIIR----QDLGSPEGIA 85 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------------------------CEEEEC----TTCCCEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--------------------------cEEEEE----CCCCCccEEE
Confidence 4677777775 46677776 455666665 4321 111111 1124688999
Q ss_pred EcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC--CCEE
Q 018144 156 EASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW--KFRC 231 (360)
Q Consensus 156 ~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~--~~~i 231 (360)
+|++ |+||++|.. .++|.+++.++...+.+. .++..|++++++++++.+||++.. .++|
T Consensus 86 ~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 86 LDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp EETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred EEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 9985 689999864 468999998744433333 456789999999987789999986 5799
Q ss_pred EEEEecCCcCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEE
Q 018144 232 RKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHL 310 (360)
Q Consensus 232 ~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v 310 (360)
+++++++.. .+.+.......|.++++|++ ++||++... .+.|
T Consensus 149 ~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~----------------------------------~~~I 191 (267)
T 1npe_A 149 ETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAG----------------------------------THRA 191 (267)
T ss_dssp EEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETT----------------------------------TTEE
T ss_pred EEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECC----------------------------------CCEE
Confidence 999988743 22332222346999999986 579999876 3589
Q ss_pred EEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 311 IHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 311 ~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.+++.+|.....+.. + ...+.++..++++||+++..++.|.+++.
T Consensus 192 ~~~~~~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 192 ECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence 999998765544432 1 23456777778999999999999999875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-14 Score=135.51 Aligned_cols=216 Identities=13% Similarity=0.122 Sum_probs=154.7
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE-CC-eeeE----------EE--ecCCeEEEEeCC-CcEEEEcCCC--eEEEeecc
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVN----------WK--FIDSHLIICDNA-NGLHKVSEDG--VENFLSYV 143 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~-~g-~~~~----------~~--~~~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~ 143 (360)
-.+.+.++++.|+++.. ..|.+++ ++ ..+. +. ..+++||+++.. +.|++++.+| .+.+..
T Consensus 79 ~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-- 155 (386)
T 3v65_B 79 RSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-- 155 (386)
T ss_dssp SCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--
T ss_pred CeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--
Confidence 34555566677777764 4688888 44 2221 22 246889999976 4677888544 444422
Q ss_pred CCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCCCEE
Q 018144 144 NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~~l 221 (360)
..+..|++|++|. .|+||++|.. .++|.++++++...+.+ ..++..|+||++++++..|
T Consensus 156 --~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 156 --TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp --SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred --CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeE
Confidence 1235689999995 6799999865 45899999875444444 3567899999999988889
Q ss_pred EEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 222 VVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 222 ~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
||++... .+|++++++|.. ...+.......|++|++| .+|+||++...
T Consensus 217 y~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--------------------------- 266 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK--------------------------- 266 (386)
T ss_dssp EEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETT---------------------------
T ss_pred EEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECC---------------------------
Confidence 9999987 899999998742 223322223469999999 57789999876
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEe
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|.+++.+|...+.+.... ...+.++...+++||++...+++|.+++
T Consensus 267 -------~~~I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 267 -------HHVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp -------TTEEEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred -------CCEEEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 358999999886544443322 3467778778899999999999999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=129.78 Aligned_cols=172 Identities=16% Similarity=0.213 Sum_probs=124.6
Q ss_pred CCCCcceEEEcCCCCEEEEecCCeEEEEE-CCee-e-----------EEE-ecCCeEEEEeCC-CcEEEEcC-CCeEEEe
Q 018144 77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-V-----------NWK-FIDSHLIICDNA-NGLHKVSE-DGVENFL 140 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~-~-----------~~~-~~~g~L~v~~~~-~gl~~~~~-~g~~~l~ 140 (360)
.+..|.+|++|++|+||+++.+++|++++ ++.. . .+. ..+|+||+++.. .++++++. +......
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 35789999999999999998888999998 5421 1 122 246789999865 56888873 3322221
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~ 219 (360)
. ...+..|++|+++++|++|+++.. .++|+++|++++..... ...+..|++++++++|.
T Consensus 145 ~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 P---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT 204 (270)
T ss_dssp C---CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred c---cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCCC
Confidence 1 112357899999999999998753 46899999986655443 23457899999999995
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|+++...++|.+|+.++.... .........|.++++|++|++|++...
T Consensus 205 -l~v~~~~~~~v~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 205 -VYVTEHNTNQVVKLLAGSTTST---VLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp -EEEEETTTSCEEEECTTCSCCE---ECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred -EEEEECCCCcEEEEcCCCCcce---eeccCCCCCceeEEECCCCCEEEEECC
Confidence 9999988889999998664221 111111135899999999999999876
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-15 Score=136.46 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=125.2
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCee--e-E----------EEe--cCCeEEEEeCCC-cEEEEcCCC--e
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTW--V-N----------WKF--IDSHLIICDNAN-GLHKVSEDG--V 136 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~--~-~----------~~~--~~g~L~v~~~~~-gl~~~~~~g--~ 136 (360)
+..|.++.+|. ++.||+++ .+++|++++ +|.. + . ++. .+++||+++... .|.+++.+| .
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 56788888986 78999999 778999999 5431 1 1 122 367899999764 677777555 4
Q ss_pred EEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEE
Q 018144 137 ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVAL 214 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~ 214 (360)
+.+.. ..+..|++|++|+ .|.||+||.+ ..++|++++++....+.+ ..++..|||+++
T Consensus 114 ~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pnglav 173 (318)
T 3sov_A 114 KVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLTL 173 (318)
T ss_dssp EEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEEE
Confidence 44432 1245799999996 5799999854 246899999874444444 356889999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++++.|||+++..++|.+++++|. ..+.+.....+.|+++++|.+ .+|++.+.
T Consensus 174 d~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~~-~lywtd~~ 227 (318)
T 3sov_A 174 DYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWS 227 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEETT-EEEEEETT
T ss_pred eccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeCC-EEEEEecC
Confidence 9988899999999999999999873 233444333457999999865 67777766
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=133.82 Aligned_cols=242 Identities=16% Similarity=0.179 Sum_probs=152.5
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEECCeeeE----------------EEec-----CCeEEEEeCC----
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVN----------------WKFI-----DSHLIICDNA---- 125 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~~g~~~~----------------~~~~-----~g~L~v~~~~---- 125 (360)
+.+..+ +..|++|+++++|.||+++..|+|+++++|+.+. +... ++.|||++..
T Consensus 24 ~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 24 EEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp EEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred EEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 556554 7899999999999999999889999998443322 1222 2689998863
Q ss_pred --CcEEEEc-CCC-e---EEEeeccC--CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 126 --NGLHKVS-EDG-V---ENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 126 --~gl~~~~-~~g-~---~~l~~~~~--~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
..|.+++ .++ + +.+.+..+ ......+++|++++||+|||++...... ....+ .....|+|+|++++.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~--~~~~d--~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER--ELAQD--LASLGGKILRLTPEG 178 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG--GGGGC--TTCSSSEEEEECTTS
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC--ccccC--CCCCceEEEEEcCCC
Confidence 5688888 433 2 23333333 2234678999999999999998542110 00000 123357999999974
Q ss_pred -------------CeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE--------EEEEEecCCcCcc------------
Q 018144 197 -------------NITTLVADGFYFANGVALSRDEDYVVVCESWKFR--------CRKYWLKGERKGK------------ 243 (360)
Q Consensus 197 -------------g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~--------i~~~~~~g~~~~~------------ 243 (360)
...+.+..++..|+|+++++++..||+++.+.++ |.++.. |...+.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTS
T ss_pred CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCC
Confidence 1345566778899999999944459999987765 555542 221110
Q ss_pred eeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--CcE-
Q 018144 244 LETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTI- 319 (360)
Q Consensus 244 ~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~- 319 (360)
...... .....|.++++ .+|++|++... .+.|.+++.+ +..
T Consensus 258 ~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~----------------------------------~~~v~~v~~~~~~~~~ 302 (352)
T 2ism_A 258 RDPLYFWPQGFPPGNLAF-FRGDLYVAGLR----------------------------------GQALLRLVLEGERGRW 302 (352)
T ss_dssp CCCSEECTTCCCEEEEEE-ETTEEEEEETT----------------------------------TTEEEEEEEEEETTEE
T ss_pred cCCeEecCCCCCCcceEE-ECCEEEEEECC----------------------------------CCEEEEEEECCCCcce
Confidence 000000 11125889999 57899999876 2467777643 321
Q ss_pred ----EEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCC----------eEEEE
Q 018144 320 ----IRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN----------FIGKV 357 (360)
Q Consensus 320 ----~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~----------~i~~~ 357 (360)
.+.+-+. ...+..+... +|.||+.+...+ +|.|+
T Consensus 303 ~~~~~~~~~~~----~~rp~~v~~~pdG~lyv~~~~~~g~g~~~~~~~~i~ri 351 (352)
T 2ism_A 303 RVLRVETALSG----FGRLREVQVGPDGALYVTTSNRDGRGQVRPGDDRVLRL 351 (352)
T ss_dssp EEEEEEEEEES----SCCEEEEEECTTSCEEEEECSTTTTSCCCTTCSCEEEE
T ss_pred eecchheeccc----CCCeeEEEECCCCcEEEEEeCCCCCCCCCCCCCEEEEe
Confidence 1222221 2357778877 599999987643 78776
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=149.85 Aligned_cols=211 Identities=14% Similarity=0.164 Sum_probs=148.6
Q ss_pred cceEEEcCCCC-EEEEecCCeEEEEE--CCeeeEE----------------EecCCeEEEEeCCCcEEEEc-CCC-eEEE
Q 018144 81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNW----------------KFIDSHLIICDNANGLHKVS-EDG-VENF 139 (360)
Q Consensus 81 Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~~~----------------~~~~g~L~v~~~~~gl~~~~-~~g-~~~l 139 (360)
..+++.|++|. ||+|+.+++|++++ +++++.+ .+.+|+||+++. .|+++++ .++ ++.+
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEc
Confidence 45788999999 99999888899998 4544332 123688999997 8999999 566 6554
Q ss_pred eecc--CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----CC--cCcc
Q 018144 140 LSYV--NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GF--YFAN 210 (360)
Q Consensus 140 ~~~~--~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----~l--~~pn 210 (360)
.... .+.....+..+.+|++|+||++. . ++|+++|++++++ .+.. ++ ...+
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt------------------~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG------------------E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEE------------------S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred cccccccccCCceEEEEEECCCCCEEEEe------------------C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 3221 11112457789999999999952 2 5799999987776 4321 12 2346
Q ss_pred eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCce----eEEcCCCCEEEEEecCchhHHHHhhcchh
Q 018144 211 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIKLDARRMKILNSSKL 286 (360)
Q Consensus 211 gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~----i~~d~~G~lwva~~~~~~~~~~~~~~~~~ 286 (360)
.++.+++|+ +|++... +|.+|+.+.. ..+.+. ...|+|++ +..|++|+||+++..
T Consensus 547 ~i~~d~~g~-lWigT~~--Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~-------------- 605 (795)
T 4a2l_A 547 CIYEASNGI-IWVGTRE--GFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR-------------- 605 (795)
T ss_dssp EEEECTTSC-EEEEESS--CEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT--------------
T ss_pred EEEECCCCC-EEEEeCC--CceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC--------------
Confidence 788888887 7777653 6999997543 333332 22345554 778999999999965
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccce--eeEEEE-CCEEEEEeCCCCeEEEE
Q 018144 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV--TSGLQV-DNHLYVISLTSNFIGKV 357 (360)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~--t~~~~~-~g~Lylgs~~~~~i~~~ 357 (360)
+|.+++++...+..|...+|.+...+ .++... +|+||+|+..+ +.++
T Consensus 606 ----------------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~~~ 655 (795)
T 4a2l_A 606 ----------------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING--ITTF 655 (795)
T ss_dssp ----------------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE--EEEE
T ss_pred ----------------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc--eEEE
Confidence 89999999888888988788755554 344444 59999999754 4444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=125.93 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=136.1
Q ss_pred cCCeEEEEeCCC-cEEEEcCCC--e-EEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 115 IDSHLIICDNAN-GLHKVSEDG--V-ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 115 ~~g~L~v~~~~~-gl~~~~~~g--~-~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
.+++||++|... .|.+++.+| . +.+... .+..|.++++|. +|+||++|.. .++|
T Consensus 45 ~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~glavd~~~g~ly~~d~~-----------------~~~I 103 (318)
T 3sov_A 45 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLACDWLGEKLYWTDSE-----------------TNRI 103 (318)
T ss_dssp GGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEEEETTTTEEEEEETT-----------------TTEE
T ss_pred CCCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEEEEcCCCeEEEEECC-----------------CCEE
Confidence 368999999764 577787433 2 222211 135689999995 7799999865 4689
Q ss_pred EEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC-CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCE
Q 018144 190 LKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTF 266 (360)
Q Consensus 190 ~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~-~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~l 266 (360)
.++++++...+.+. ..+..|+|+++++++..|||++.+ ..+|++++++|.. .+.+....-..|++|++|+ +|+|
T Consensus 104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEE
Confidence 99998754444444 678899999999987789999975 6899999998742 2233222234699999996 6789
Q ss_pred EEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEE
Q 018144 267 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYV 346 (360)
Q Consensus 267 wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lyl 346 (360)
|++... .+.|.+++.+|...+.+.... ...+.++..+++.||+
T Consensus 181 Y~aD~~----------------------------------~~~I~~~d~dG~~~~~~~~~~---~~~P~glav~~~~lyw 223 (318)
T 3sov_A 181 YWADAK----------------------------------LNFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYW 223 (318)
T ss_dssp EEEETT----------------------------------TTEEEEEETTSCSCEEEECSC---CSCEEEEEEETTEEEE
T ss_pred EEEECC----------------------------------CCEEEEEcCCCCceEEEecCC---CCCceEEEEeCCEEEE
Confidence 999876 358999999886655554322 3567778888899999
Q ss_pred EeCCCCeEEEEeC
Q 018144 347 ISLTSNFIGKVQL 359 (360)
Q Consensus 347 gs~~~~~i~~~~l 359 (360)
....+++|.+++.
T Consensus 224 td~~~~~V~~~~~ 236 (318)
T 3sov_A 224 TDWSTHSILACNK 236 (318)
T ss_dssp EETTTTEEEEEET
T ss_pred EecCCCeEEEEEC
Confidence 9999999999874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-14 Score=133.41 Aligned_cols=211 Identities=9% Similarity=0.121 Sum_probs=147.3
Q ss_pred CCCCEEEEecCCeEEEEE-CCe-ee----------EEEe--cCCeEEEEeCC-CcEEEEcCCC------eEEEeeccCCc
Q 018144 88 KNGVIYTATRDGWIKRLQ-DGT-WV----------NWKF--IDSHLIICDNA-NGLHKVSEDG------VENFLSYVNGS 146 (360)
Q Consensus 88 ~~G~l~v~~~~G~I~~~~-~g~-~~----------~~~~--~~g~L~v~~~~-~gl~~~~~~g------~~~l~~~~~~~ 146 (360)
+...|+++. ...|.+++ ++. .. .+.. .+++||++|.. +.|++++.+| .+.+.. .
T Consensus 82 ~~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~ 156 (400)
T 3p5b_L 82 SIAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----R 156 (400)
T ss_dssp TSCEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----S
T ss_pred ccceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----C
Confidence 344555554 35677777 432 11 1222 36889999976 4577777332 222221 1
Q ss_pred cccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEE
Q 018144 147 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 147 ~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~ 224 (360)
.+..|.+|++|. .|+||++|.. .++|.++++++...+.+. ..+..|++|++++.+..|||+
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred CCCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence 235789999997 7899999865 468999999865555444 478889999999987789999
Q ss_pred eCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 225 ESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 225 ~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
+.+. .+|.+++++|.. ...+....-..|.+|++|. +++||++...
T Consensus 220 d~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~------------------------------ 266 (400)
T 3p5b_L 220 DWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------ 266 (400)
T ss_dssp ECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------
T ss_pred eCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECC------------------------------
Confidence 9763 789999998742 2233222234699999995 6689999876
Q ss_pred cCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEe
Q 018144 303 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 303 ~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~ 358 (360)
...|.+++.+|...+.+....+ .+..+.++..++++||+....+++|.+++
T Consensus 267 ----~~~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 267 ----LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp ----TTEEEEEETTSCCCEEEEECSS-TTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred ----CCEEEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence 3589999998876555543222 24567788888899999999999999886
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=134.08 Aligned_cols=180 Identities=11% Similarity=0.128 Sum_probs=124.1
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE-CCe---ee-------------------EEEe-c-CCeEEEEeC--
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT---WV-------------------NWKF-I-DSHLIICDN-- 124 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~---~~-------------------~~~~-~-~g~L~v~~~-- 124 (360)
...+.+..|.+|++|++|+||+++ .+++|++++ +|+ .. .+.. + +|+|||++.
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 334557899999999999999998 678999999 654 11 1222 3 689999995
Q ss_pred CCcEEEEcCCC--eEEEeeccC-----CccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 125 ANGLHKVSEDG--VENFLSYVN-----GSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 125 ~~gl~~~~~~g--~~~l~~~~~-----~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
.+.+.+++.+| ...+..... ...+..|++|++|++ |+||++|.. +++|.+||+++
T Consensus 165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~~I~~~~~~~ 227 (329)
T 3fvz_A 165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NGRIQCFKTDT 227 (329)
T ss_dssp CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTT
T ss_pred CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CCEEEEEECCC
Confidence 46788888777 444432211 124567999999998 899999865 56899999987
Q ss_pred CeEEEEeC---CCcCcceEEEec------CCCEEEEEeCCCCEEEEEEecCCcCcceeeec--cCCCCCCceeEEcCCCC
Q 018144 197 NITTLVAD---GFYFANGVALSR------DEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGT 265 (360)
Q Consensus 197 g~~~~~~~---~l~~pngia~~~------dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~~~~g~pd~i~~d~~G~ 265 (360)
|++..... ....+.+++++| +|+ +|+++....+|.+++....+ ....+. ......|.++++|++|+
T Consensus 228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGE--IIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp CCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCC--EEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCe--EEEEEcCCCCccCCeeEEEECCCCC
Confidence 77654332 122344555555 665 66666667789999865322 122221 11223699999999999
Q ss_pred EEEEEec
Q 018144 266 FWIAIIK 272 (360)
Q Consensus 266 lwva~~~ 272 (360)
+||+...
T Consensus 305 lyvad~~ 311 (329)
T 3fvz_A 305 VYIGDAH 311 (329)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999876
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=141.03 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=134.0
Q ss_pred ecCCCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe-eeE-----------EEe--cCCeEEEEeCCC-cEEEEcCC
Q 018144 73 VGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVN-----------WKF--IDSHLIICDNAN-GLHKVSED 134 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~-~~~-----------~~~--~~g~L~v~~~~~-gl~~~~~~ 134 (360)
++...+..|.+|++|. +|.||+++ .+++|+|++ +|. .+. ++. .+++||+++... .|.+++.+
T Consensus 31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d 110 (628)
T 4a0p_A 31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110 (628)
T ss_dssp CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC
Confidence 4444478999999996 78999999 789999998 652 222 222 357899999875 56666655
Q ss_pred C--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcce
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 211 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~png 211 (360)
| .+.+.. ..+..|++|++|+ +|.||+||.+ ..++|.+++++....+.+..++..|+|
T Consensus 111 G~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~G 170 (628)
T 4a0p_A 111 GQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANG 170 (628)
T ss_dssp STTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred CCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcce
Confidence 6 445532 2245799999996 7899999854 146899999986666777788999999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
++++++++.|||+++..++|.+++++|... +++...+ ..|.+++++. +++|++.+.
T Consensus 171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l-~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDL-PHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECC-SCEEEEEEET-TEEEEEETT
T ss_pred EEEccccCEEEEEECCCCEEEEEcCCCCce---EEeeccC-CCceEEEEEC-CEEEEecCC
Confidence 999999889999999999999999987432 3444433 3699999997 689999875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=140.44 Aligned_cols=216 Identities=9% Similarity=0.111 Sum_probs=150.4
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE-CC-eee----------EEEe--cCCeEEEEeCCC-cEEEEcCCC------eEEEee
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ-DG-TWV----------NWKF--IDSHLIICDNAN-GLHKVSEDG------VENFLS 141 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~-~g-~~~----------~~~~--~~g~L~v~~~~~-gl~~~~~~g------~~~l~~ 141 (360)
+.+++....|+++.. ..|.+++ ++ ... .+.. .+++||+++... .|++++.+| .+.+.
T Consensus 389 C~~~~~~p~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi- 466 (791)
T 3m0c_C 389 CKAVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI- 466 (791)
T ss_dssp CEETTSCCEEEEECB-SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-
T ss_pred eeecccccccccccc-cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-
Confidence 334444556666653 3477776 32 221 2222 368899999874 577777322 22222
Q ss_pred ccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCC
Q 018144 142 YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDED 219 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~ 219 (360)
...+..|.+|++|..+ +||++|.. .++|.++++++...+.+. ..+..|+||++++.+.
T Consensus 467 ---~~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 467 ---SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 526 (791)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred ---ecCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC
Confidence 1224679999999755 89999865 468999998855555444 5788899999999877
Q ss_pred EEEEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 220 YVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 220 ~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
.|||++++. .+|.+++++|.. ..++.......|.+|++| .+|+||++...
T Consensus 527 ~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~------------------------- 578 (791)
T 3m0c_C 527 FMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------- 578 (791)
T ss_dssp EEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT-------------------------
T ss_pred CEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCC-------------------------
Confidence 899999876 899999998742 223332333469999999 57789999876
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEe
Q 018144 298 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~ 358 (360)
...|.+++.+|.....+....+ .+..+.++...+++||++...+++|.+++
T Consensus 579 ---------~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 579 ---------LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ---------TTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ---------CCcEEEEecCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 3589999998876555543322 24567778888899999999999999886
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=130.67 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=123.6
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CC-----eeeE-----------EEe--cCCeEEEEeCCC-cEEEEcCCC
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVN-----------WKF--IDSHLIICDNAN-GLHKVSEDG 135 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g-----~~~~-----------~~~--~~g~L~v~~~~~-gl~~~~~~g 135 (360)
+..|.+|++|. ++.||+++ .+++|++++ +| ..+. ++. .+++||+++... .|.+++.+|
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 68999999995 78999999 678999998 54 1111 222 268899999774 566777555
Q ss_pred --eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcce
Q 018144 136 --VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANG 211 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~png 211 (360)
.+.+... .+..|++|++|+ +|.||+||.. ..++|.+++.+....+.+ ..++..|||
T Consensus 191 ~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 191 VKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp CSEEEEEEC----SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CceEEEEeC----CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceEE
Confidence 4444321 235699999997 6799999864 135799999875444444 356889999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~ 272 (360)
|+++++++.|||+++..++|.+++++|.. .+.+... ....|.+++++.+ ++|++.+.
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~~-~lywtd~~ 309 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDII 309 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEETT-EEEEEESS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeCC-EEEEecCC
Confidence 99999888999999999999999998742 2233222 2346999999654 67777766
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=122.03 Aligned_cols=190 Identities=14% Similarity=0.201 Sum_probs=135.3
Q ss_pred ecCCeEEEEeCC-CcEEEEcCCC--eEEEeecc-CCccccccccEEE-cCCCcEEEEeCCCCCCCccceecccccCCccE
Q 018144 114 FIDSHLIICDNA-NGLHKVSEDG--VENFLSYV-NGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 114 ~~~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~-~~~~~~~~n~l~~-d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
..+|+|||++.. +++.+++.++ ...+.... ....+..|.++++ +++|++|+++.. ..++
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----------------~~~~ 101 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------------PTHQ 101 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------------GGCE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----------------CCCE
Confidence 346889999765 5688888556 44443211 1123457899999 589999998742 1468
Q ss_pred EEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEEcCCCCE
Q 018144 189 LLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTF 266 (360)
Q Consensus 189 l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~d~~G~l 266 (360)
|.++|++......+. .....|++++++++|+ +|+++...++|.+|+.++... ..+.. .....|.++++|++|++
T Consensus 102 i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~---~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVL---HKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEE---EEEECTTTCSSEEEEEECSSSEE
T ss_pred EEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEE---EEeCCCCccCCcEEEEECCCCCE
Confidence 999997633333332 2356899999999997 999998888999999765322 22221 12235899999999999
Q ss_pred EEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEE
Q 018144 267 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLY 345 (360)
Q Consensus 267 wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Ly 345 (360)
|++... .+.|.+++++|+.+..+... |. +..+.++..+ +|+||
T Consensus 178 ~v~~~~----------------------------------~~~i~~~~~~g~~~~~~~~~-g~-~~~p~~i~~d~~G~l~ 221 (286)
T 1q7f_A 178 FISDNR----------------------------------AHCVKVFNYEGQYLRQIGGE-GI-TNYPIGVGINSNGEIL 221 (286)
T ss_dssp EEEEGG----------------------------------GTEEEEEETTCCEEEEESCT-TT-SCSEEEEEECTTCCEE
T ss_pred EEEECC----------------------------------CCEEEEEcCCCCEEEEEccC-Cc-cCCCcEEEECCCCCEE
Confidence 999865 35899999999988777543 21 3467788877 58999
Q ss_pred EEeCCCC-eEEEEeC
Q 018144 346 VISLTSN-FIGKVQL 359 (360)
Q Consensus 346 lgs~~~~-~i~~~~l 359 (360)
+++..++ .|.+++.
T Consensus 222 v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEECSSSCEEEEECT
T ss_pred EEeCCCCEEEEEECC
Confidence 9998887 8988864
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-14 Score=142.81 Aligned_cols=214 Identities=13% Similarity=0.174 Sum_probs=138.3
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CC---ee-----------------eE-EEecCCeEEEEeCCCcEEEEc-CCC-
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DG---TW-----------------VN-WKFIDSHLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g---~~-----------------~~-~~~~~g~L~v~~~~~gl~~~~-~~g- 135 (360)
-.+|+.|++|.||+|+. +++++++ ++ .+ .. +.+.+|+|||++ ..||.+++ .++
T Consensus 326 v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 326 FYSLFRDSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQ 403 (758)
T ss_dssp EEEEEECTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCc
Confidence 35788999999999995 4688886 22 11 11 223478999999 56999999 667
Q ss_pred eEEEeec-cCC-ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC------CeEE---EE--
Q 018144 136 VENFLSY-VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NITT---LV-- 202 (360)
Q Consensus 136 ~~~l~~~-~~~-~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t------g~~~---~~-- 202 (360)
++.+... ..+ .....+..+..|++|+||++. ..++|+++|+++ +.+. .+
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT------------------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST------------------CLGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEEEE------------------SSSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE------------------CCCceEEEccccccccCCcceeccccccc
Confidence 6665321 111 122456788999999999953 345799998652 2221 11
Q ss_pred eCCCc--CcceEEEecCCCEEEE-EeCCCCEEEEEEecCCcCcceeeec-cCCC--CCCceeEEcCCCCEEEEEecCchh
Q 018144 203 ADGFY--FANGVALSRDEDYVVV-CESWKFRCRKYWLKGERKGKLETFA-ENLP--GAPDNINLAPDGTFWIAIIKLDAR 276 (360)
Q Consensus 203 ~~~l~--~pngia~~~dg~~l~v-~~t~~~~i~~~~~~g~~~~~~~~~~-~~~~--g~pd~i~~d~~G~lwva~~~~~~~ 276 (360)
..++. ..+.+..+++|+ +|+ +.+ .++|.+|+++.. ..+.+. +.+. ..+..+..|.+|+||+++..
T Consensus 466 ~~~l~~~~i~~i~~d~~g~-lWi~~~t-~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~---- 536 (758)
T 3ott_A 466 HNGLSGMFINQIIPDNEGN-VWVLLYN-NKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG---- 536 (758)
T ss_dssp GGTCSCSCEEEEEECTTSC-EEEEETT-CSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTSCEEEEETT----
T ss_pred ccccccceeeeEEEcCCCC-EEEEccC-CCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCCCEEEEecC----
Confidence 11222 356788888887 777 344 357999997543 233332 1111 23567889999999999854
Q ss_pred HHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEE
Q 018144 277 RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK 356 (360)
Q Consensus 277 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~ 356 (360)
++.+++++...+..+. .+|.+.+.+.++.+++|+||+++. +-|.+
T Consensus 537 --------------------------------Gl~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~--~Gl~~ 581 (758)
T 3ott_A 537 --------------------------------GVMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTT--NGLWI 581 (758)
T ss_dssp --------------------------------EEEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEES--SCEEE
T ss_pred --------------------------------ceEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECC--CCeEE
Confidence 7999998766555553 356656678888888899999994 44666
Q ss_pred Ee
Q 018144 357 VQ 358 (360)
Q Consensus 357 ~~ 358 (360)
++
T Consensus 582 ~~ 583 (758)
T 3ott_A 582 ID 583 (758)
T ss_dssp EE
T ss_pred Ec
Confidence 65
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-13 Score=123.00 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=119.5
Q ss_pred CCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-C-CeeeE------------------EEe----cCCeEEEE-eC-----
Q 018144 77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-D-GTWVN------------------WKF----IDSHLIIC-DN----- 124 (360)
Q Consensus 77 ~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~-g~~~~------------------~~~----~~g~L~v~-~~----- 124 (360)
+-.-||++.+|+ +|.+|+++ .+|.|.+++ + +..+. +.. ..|+|||+ +.
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 346899999986 89999999 899999998 4 43211 122 46789984 31
Q ss_pred --------CCcEEEEc-C---CC-eEEEeec--cC-------CccccccccEEEcCCCcEEEEeCCCCCCCccceecccc
Q 018144 125 --------ANGLHKVS-E---DG-VENFLSY--VN-------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 182 (360)
Q Consensus 125 --------~~gl~~~~-~---~g-~~~l~~~--~~-------~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~ 182 (360)
...++++| . ++ ....+.. .. +.....+|+|++|++|++||+|+.
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-------------- 156 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-------------- 156 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence 35688999 6 56 4333321 11 112346999999999999999864
Q ss_pred cCCc-cEEEEEcCCCCeEEEEe------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeee--cc-CCC
Q 018144 183 GKPH-GQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF--AE-NLP 252 (360)
Q Consensus 183 ~~~~-g~l~~~d~~tg~~~~~~------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~--~~-~~~ 252 (360)
. +.|++++++......+. .....+|||+++|||+.|++.++ .++|++|+++.........- .. ...
T Consensus 157 ---~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~ 232 (334)
T 2p9w_A 157 ---GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTL 232 (334)
T ss_dssp ---SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCC
T ss_pred ---CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccc
Confidence 3 67999999844444332 12345889999999999999998 88999999873211001110 10 011
Q ss_pred CCCcee-EEcCCCCE-EEEEec
Q 018144 253 GAPDNI-NLAPDGTF-WIAIIK 272 (360)
Q Consensus 253 g~pd~i-~~d~~G~l-wva~~~ 272 (360)
..||+| ....+|++ +|+...
T Consensus 233 ~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 233 SGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp TTEEEEEEEEETTEEEEEEEET
T ss_pred cCcccccccccCCEEEEEEcCC
Confidence 258896 56778987 776654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=127.71 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=116.4
Q ss_pred CCcceEEEcC-CCCEEEEecCCeEEEEE-C-CeeeEE----------------Eec-CCeEEEEeCC-------------
Q 018144 79 NHPEDASMDK-NGVIYTATRDGWIKRLQ-D-GTWVNW----------------KFI-DSHLIICDNA------------- 125 (360)
Q Consensus 79 ~~Pe~i~~d~-~G~l~v~~~~G~I~~~~-~-g~~~~~----------------~~~-~g~L~v~~~~------------- 125 (360)
..|.+|++|+ +|+||+++..++|++++ + ++.+.+ ... +|+|||++..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 4799999996 89999999777799998 4 433221 124 6899999864
Q ss_pred -----CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCC-
Q 018144 126 -----NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS- 196 (360)
Q Consensus 126 -----~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t- 196 (360)
.++++++ .++ ++.+... +..|++|+++++|+ ||++|.. .++|++|+.++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~~ 217 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-----LHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEGP 217 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-----ESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSST
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-----CccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCCC
Confidence 3588888 456 5554332 35799999999986 9999754 46899998764
Q ss_pred --CeEEEEeCCCcCcceEEEecCCCEEEEEeCC----------CCEEEEEEecCCcCcceeeeccC--C-CCCCceeEEc
Q 018144 197 --NITTLVADGFYFANGVALSRDEDYVVVCESW----------KFRCRKYWLKGERKGKLETFAEN--L-PGAPDNINLA 261 (360)
Q Consensus 197 --g~~~~~~~~l~~pngia~~~dg~~l~v~~t~----------~~~i~~~~~~g~~~~~~~~~~~~--~-~g~pd~i~~d 261 (360)
++.+.+.. +..|.|++++++|+ +||++.. .++|.+|+.+|... ..+... . ...|.+++.
T Consensus 218 ~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~---~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 218 KKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNIL---EVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp TTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEE---EEEECCTTTTTSCCCEEEE-
T ss_pred cCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEE---EEEECCCCCccccceEEEE-
Confidence 34444332 22399999999997 8999865 46799999876432 223211 1 124677766
Q ss_pred CCCCEEEEEec
Q 018144 262 PDGTFWIAIIK 272 (360)
Q Consensus 262 ~~G~lwva~~~ 272 (360)
.+|+|||+...
T Consensus 292 ~~g~L~v~~~~ 302 (322)
T 2fp8_A 292 HDGLLYIGTLF 302 (322)
T ss_dssp ETTEEEEECSS
T ss_pred eCCEEEEeecC
Confidence 47899999765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-13 Score=132.85 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=128.3
Q ss_pred cCCCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe-eeE-----------EEe--cCCeEEEEeCCCc-EEEEcCCC
Q 018144 74 GEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVN-----------WKF--IDSHLIICDNANG-LHKVSEDG 135 (360)
Q Consensus 74 ~~~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~-~~~-----------~~~--~~g~L~v~~~~~g-l~~~~~~g 135 (360)
+...+..|.+|++|. +|.||+++ ..+.|+|++ +|. .+. ++. .+++||+++...+ |.+++.+|
T Consensus 344 ~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 344 QLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp CCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 334467899999996 78999999 688999999 652 222 222 3678999998754 55555556
Q ss_pred --eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcce
Q 018144 136 --VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANG 211 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~png 211 (360)
.+.+.. ..+..|++|++|+. |.||+||.+ ...+|.+.+.+....+.+. ..+..|||
T Consensus 424 ~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 424 TMRKILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp CSCEEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCee
Confidence 445432 23568999999985 999999965 1357999988743334443 46889999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
++++++++.|||+++..++|.+++++|... +.+.......|.+|+++.+ +||++.+.
T Consensus 484 lalD~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~~-~ly~tD~~ 540 (619)
T 3s94_A 484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLGD-YVYWTDWQ 540 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEETT-EEEEECTT
T ss_pred eEEcccCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEECC-EEEEeecC
Confidence 999998888999999999999999987432 2222223347999999865 89999876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-12 Score=117.14 Aligned_cols=224 Identities=13% Similarity=0.119 Sum_probs=149.3
Q ss_pred CCcceEEEcCCC-CEEEEec-------CCeEEEEE--CCeeeE-EE----------ecC-CeEEEEeCC-CcEEEEc-CC
Q 018144 79 NHPEDASMDKNG-VIYTATR-------DGWIKRLQ--DGTWVN-WK----------FID-SHLIICDNA-NGLHKVS-ED 134 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~-------~G~I~~~~--~g~~~~-~~----------~~~-g~L~v~~~~-~gl~~~~-~~ 134 (360)
.+|.+++++++| .+|+++. ++.|+.++ +++... +. ..+ +.+|+++.. +.+..++ .+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 578899999976 6888873 45799998 554321 11 123 459998875 4677788 66
Q ss_pred C-e-EEEeeccCC----ccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CC
Q 018144 135 G-V-ENFLSYVNG----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF 206 (360)
Q Consensus 135 g-~-~~l~~~~~~----~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l 206 (360)
+ . ..+...... ..-..+.+++++++|+ +|+++.. ..+.|+.+|..+++...... ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCCC
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCCC
Confidence 6 3 333221100 0011367899999985 8887522 24679999999888766555 44
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~ 284 (360)
..|+++++++||+.+|+++. .+.|..++....+.......... ....+.+++++++|+ +|++...
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------ 251 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------------ 251 (353)
T ss_dssp TTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------------
T ss_pred CccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------------
Confidence 56999999999999999886 57899999764322111111111 223567799999997 8887754
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. +++.+..+..+.+ ..+... +++||+++..++.|.++++
T Consensus 252 ----------------------~~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 252 ----------------------AAEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp ----------------------SSEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ----------------------CCEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 357888986 5777777765332 234443 4679999988999998875
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-13 Score=136.24 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=139.0
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCee-----------eEEEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCC
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW-----------VNWKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNG 145 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~-----------~~~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~ 145 (360)
-.+|+.|++|.||+|+.+ ++++++ ++++ ..+...+|.|||++.. |+++++ .++ ++.+.....+
T Consensus 65 i~~i~~d~~g~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 65 IYCGVIIDNTYLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp EEEEEEETTTEEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHC
T ss_pred EEEEEEcCCCcEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCC
Confidence 356788999999999965 599998 4432 2233457899999865 999999 556 6655221122
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC------cCcceEEEecCCC
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------YFANGVALSRDED 219 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l------~~pngia~~~dg~ 219 (360)
.+...+..+..|.+|+||++. .++|++||+.+++++.+.... ...+.+..+++++
T Consensus 143 l~~~~i~~i~~d~~g~lWigt-------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 143 LPNNTIYSIIRTKDNQIYVGT-------------------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp CSCSCEEEEEECTTCCEEEEE-------------------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTT
T ss_pred cCCCeEEEEEEcCCCCEEEEe-------------------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCC
Confidence 223456788899999999952 247999999888776543211 1234677777777
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
.||++.. ++|++|+.+..+......+.. .....|+.|.+|+|||++..
T Consensus 204 ~lWigt~--~Gl~~~~~~~~~~~~~~~l~~---~~i~~i~~d~~g~lWigT~~--------------------------- 251 (758)
T 3ott_A 204 CVWIGTE--GYLFQYFPSTGQIKQTEAFHN---NSIKSLALDGNGDLLAGTDN--------------------------- 251 (758)
T ss_dssp EEEEEEE--EEEEEEETTTTEEEEEEEEEE---EEEEEEEECTTCCEEEEETT---------------------------
T ss_pred EEEEEEC--CCCeEEcCCCCeEEeccCCCC---CeEEEEEEcCCCCEEEEeCC---------------------------
Confidence 6787763 479999975432222211110 12345778999999999854
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeC----CCCCcccceeeEEEEC-CEEEEEeCCC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVD----PTGQLMSFVTSGLQVD-NHLYVISLTS 351 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~----~~g~~~~~~t~~~~~~-g~Lylgs~~~ 351 (360)
++.+++++...+..+.. +.+...+.+.++.++. |.||+|+..+
T Consensus 252 ---------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G 299 (758)
T 3ott_A 252 ---------GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG 299 (758)
T ss_dssp ---------EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred ---------ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence 78999987655555532 2234445677887774 9999999754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=135.17 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=123.0
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe--eeE-----------EEe--cCCeEEEEeCCCc-EEEEcCCC-
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT--WVN-----------WKF--IDSHLIICDNANG-LHKVSEDG- 135 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~--~~~-----------~~~--~~g~L~v~~~~~g-l~~~~~~g- 135 (360)
..+..|.+|++|. ++.||+++ .+++|+|++ +|. .+. ++. .+++||+++...+ |.+++.+|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 4478999999996 78999999 688999998 653 121 122 2678999998754 55666666
Q ss_pred -eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGV 212 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngi 212 (360)
.+.+.. ..+..|++|++|+. |.||+||.+ ..++|.+.+++....+.+. ..+..||||
T Consensus 117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp SCEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred CEEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 445532 23467999999985 799999854 1358999998744444443 568899999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 213 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 213 a~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++++++.|||+++..++|.+++++|.. .+.+.......|.+|+++++ ++|++.+.
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~td~~ 232 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWS 232 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEEECTT
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence 9999888999999999999999998742 22222222346999999977 89998875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=118.89 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=132.7
Q ss_pred CCCEEEEecCCeEEEEE-CCeeeE------------EEecCCeEEEEeCCCcEEEEcCCC-eEEEeeccCCccccccccE
Q 018144 89 NGVIYTATRDGWIKRLQ-DGTWVN------------WKFIDSHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDV 154 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~-~g~~~~------------~~~~~g~L~v~~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l 154 (360)
+|.||+++.+|+|++++ +|+... ....+|+||+++...+++.++.+| ...... ... .....+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-~~~---~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-TND---AITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-CSS---CCCSCC
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-cCC---Cceeee
Confidence 88999999888999998 653221 112367899988778999999447 332212 111 245677
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCCCEEEE
Q 018144 155 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRK 233 (360)
Q Consensus 155 ~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~ 233 (360)
.+|++|+||++ + ++|+++|+ +++... ..........++++++|. +|++.. .+.|++
T Consensus 183 ~~d~~g~l~v~------------------t--~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~~ 239 (330)
T 3hxj_A 183 SIGKDGTIYFG------------------S--DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLYA 239 (330)
T ss_dssp EECTTCCEEEE------------------S--SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEEE
T ss_pred EEcCCCEEEEE------------------e--CEEEEECC-CCcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEEE
Confidence 88899999995 2 57999995 454432 333334567888998886 877765 468999
Q ss_pred EEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE
Q 018144 234 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 313 (360)
Q Consensus 234 ~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (360)
++.++... ..+. .....+..+.+|.+|+||+++.. ++|+++
T Consensus 240 ~~~~g~~~---~~~~-~~~~~~~~~~~~~~g~l~v~t~~-----------------------------------ggl~~~ 280 (330)
T 3hxj_A 240 INPDGTEK---WRFK-TGKRIESSPVIGNTDTIYFGSYD-----------------------------------GHLYAI 280 (330)
T ss_dssp ECTTSCEE---EEEE-CSSCCCSCCEECTTSCEEEECTT-----------------------------------CEEEEE
T ss_pred ECCCCCEe---EEee-CCCCccccceEcCCCeEEEecCC-----------------------------------CCEEEE
Confidence 97655322 1221 12234567888999999999875 689999
Q ss_pred CCCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCC
Q 018144 314 AEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSN 352 (360)
Q Consensus 314 ~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~ 352 (360)
|++|+.+..+..+.. .+.++.. .+|+||+++..+-
T Consensus 281 d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~~G~ 316 (330)
T 3hxj_A 281 NPDGTEKWNFETGSW----IIATPVIDENGTIYFGTRNGK 316 (330)
T ss_dssp CTTSCEEEEEECSSC----CCSCCEECTTCCEEEECTTSC
T ss_pred CCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcCCCe
Confidence 999998887775432 3455566 5699999987653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=119.74 Aligned_cols=221 Identities=8% Similarity=0.003 Sum_probs=148.8
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee----------EEEe-cCCeEEEEe-CCCcEEEEc-CCC-eE-EEe
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV----------NWKF-IDSHLIICD-NANGLHKVS-EDG-VE-NFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~----------~~~~-~~g~L~v~~-~~~gl~~~~-~~g-~~-~l~ 140 (360)
..|++++++ ++.+|+++ .++.|..+| +++.. .+.. .+|+|||++ ..+.+.++| .++ +. .+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 468999987 67899998 578899999 56432 1223 578999999 567899999 666 43 332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
..........|.+|++ .++++|+++.+ ..+.|.++|++++++.........|+++++++||+
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~- 184 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK- 184 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-
Confidence 2211112346889999 57899998642 14689999999888765544456799999999997
Q ss_pred EEEEeCCC----------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHH
Q 018144 221 VVVCESWK----------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 221 l~v~~t~~----------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
+|++.... +.|+++|.+..+.. ..+.......|.+++++++| .+|++..
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~------------------ 244 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN------------------ 244 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEESS------------------
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEcc------------------
Confidence 88887764 78999997643221 12211111269999999876 5888643
Q ss_pred HHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEE--CCEEEEEe----CCCCeEEEEeC
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVIS----LTSNFIGKVQL 359 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs----~~~~~i~~~~l 359 (360)
.|+++|.+ +++...-..+.+ ...+.++..+ +++||+++ ..++.|.+++.
T Consensus 245 -------------------~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 245 -------------------DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp -------------------SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred -------------------EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 36788864 443210001111 2356677775 58999999 77888988875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=130.58 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=128.2
Q ss_pred cCCCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCee--eEE----------------Ee--cCCeEEEEeCCCcEEE
Q 018144 74 GEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTW--VNW----------------KF--IDSHLIICDNANGLHK 130 (360)
Q Consensus 74 ~~~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~--~~~----------------~~--~~g~L~v~~~~~gl~~ 130 (360)
+...+..+.+|++|. ++.||+++ ..++|+|++ +|.. +.+ +. .+++||+++...+.+.
T Consensus 335 ~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~ 414 (628)
T 4a0p_A 335 PIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414 (628)
T ss_dssp CCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEE
Confidence 333467788899996 78999999 688999998 6531 111 11 2477999998765544
Q ss_pred E-cCCC--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CC
Q 018144 131 V-SEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG 205 (360)
Q Consensus 131 ~-~~~g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~ 205 (360)
+ +.+| .+.+... .+..|++|++|+ +|.||+||.+. ..++|.+.+++....+.+. ..
T Consensus 415 v~~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~ 475 (628)
T 4a0p_A 415 VTRLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSG 475 (628)
T ss_dssp EEETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSS
T ss_pred EEECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEecc
Confidence 4 4667 3344322 235799999998 89999998641 1137999998744444444 46
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+..|||++++++++.|||+++..++|.+++++|.. .+++.......|.+|+++. |+||++.+.
T Consensus 476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~tD~~ 538 (628)
T 4a0p_A 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYWIDKQ 538 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEEEETT
T ss_pred CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEEEECC
Confidence 88999999999988899999999999999998843 3344433334799999987 799999876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=132.32 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=122.6
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe-----eeE-----------EEe--cCCeEEEEeCCC-cEEEEcCCC
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-----WVN-----------WKF--IDSHLIICDNAN-GLHKVSEDG 135 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~-----~~~-----------~~~--~~g~L~v~~~~~-gl~~~~~~g 135 (360)
+..|.+|++|. ++.||+++ .+++|++++ +|. .+. ++. .+++||+++... .|.+++.+|
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 68899999996 78999999 678999998 542 121 121 256899999874 566677666
Q ss_pred --eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcce
Q 018144 136 --VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANG 211 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~png 211 (360)
.+++... .+..|++|++|+. |.||+||.+ ..++|.+++.+....+.+. .++..|+|
T Consensus 503 ~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 503 VKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp SSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CeEEEEEeC----CCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 4444331 2356999999985 799999865 1257999998754444443 46889999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~ 272 (360)
|+++++++.|||++...++|.+++++|... ..+... .-..|.+|+++. ++||++.+.
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~-~~lYwtD~~ 621 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDII 621 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEeC-CEEEEEECC
Confidence 999988888999999999999999987532 222221 122577788865 489999876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=123.42 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=117.6
Q ss_pred CCCcceEEEcCCCC-EEEEecCC--eEEEEE-C-Ce-eeEE--------------E-ec-CCeEEEEeCCCcEEEEc-CC
Q 018144 78 VNHPEDASMDKNGV-IYTATRDG--WIKRLQ-D-GT-WVNW--------------K-FI-DSHLIICDNANGLHKVS-ED 134 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~~~G--~I~~~~-~-g~-~~~~--------------~-~~-~g~L~v~~~~~gl~~~~-~~ 134 (360)
...|. ++++++|. ||+++.++ .|++++ . +. ...+ . .+ +|+||+++..+.+++++ .+
T Consensus 171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT
T ss_pred CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC
Confidence 45677 99998775 78888544 899998 3 22 1122 1 12 68899988766699999 45
Q ss_pred C-eEEEee-ccCCccccccc-cEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-C----
Q 018144 135 G-VENFLS-YVNGSKLRFAN-DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G---- 205 (360)
Q Consensus 135 g-~~~l~~-~~~~~~~~~~n-~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~---- 205 (360)
+ .+.+.. ...+.....|. +|++++ +|+||++|.. .++|++++++ ++...+.. .
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~-g~~~~~~g~~~~~g 311 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPD-GECEWFCGSATQKT 311 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTT-CCEEEEEECTTCCS
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecC-CCEEEEEeCCCCCC
Confidence 5 544421 11111112244 999999 6899999864 4689999987 44444322 1
Q ss_pred ----------CcCcceEEEecCCCEEEEEeC-CCCEEEEEEecCCcCcceeeeccC--------------CCCCCceeEE
Q 018144 206 ----------FYFANGVALSRDEDYVVVCES-WKFRCRKYWLKGERKGKLETFAEN--------------LPGAPDNINL 260 (360)
Q Consensus 206 ----------l~~pngia~~~dg~~l~v~~t-~~~~i~~~~~~g~~~~~~~~~~~~--------------~~g~pd~i~~ 260 (360)
+..|+|++++++|+ +|++++ .+++|.++++.... ...+... .-..|.++++
T Consensus 312 ~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giav 387 (409)
T 3hrp_A 312 VQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICY 387 (409)
T ss_dssp CBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEE
T ss_pred cCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEE
Confidence 56799999999998 999999 99999999943222 2222111 0125999999
Q ss_pred cCCCCEEEEEec
Q 018144 261 APDGTFWIAIIK 272 (360)
Q Consensus 261 d~~G~lwva~~~ 272 (360)
|++|+|||+...
T Consensus 388 d~~g~lyVad~~ 399 (409)
T 3hrp_A 388 DGEGGYWIAEAW 399 (409)
T ss_dssp CSSSEEEEEEST
T ss_pred cCCCCEEEEECC
Confidence 999999999987
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-12 Score=116.01 Aligned_cols=247 Identities=15% Similarity=0.215 Sum_probs=154.1
Q ss_pred ccceEecCCCCCCcceEEEcCCCCEEEEec-CCeEEEEE--CCeeeEE-----------------Ee-----cCCeEEEE
Q 018144 68 QDFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNW-----------------KF-----IDSHLIIC 122 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~--~g~~~~~-----------------~~-----~~g~L~v~ 122 (360)
...+.+.++ +..|++|+++++|.||++.. .|+|++++ +|+.+.+ +. .++.||++
T Consensus 22 ~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 22 KVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred ceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 355667666 89999999999999999996 89999998 4543322 11 14679986
Q ss_pred eC---CCcEEEEc-CC-----C----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 123 DN---ANGLHKVS-ED-----G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 123 ~~---~~gl~~~~-~~-----g----~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
.. .+.|.++. .. . .+.+....+....+....|++++||.|||+.......... .+ .....|.|
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~--qd--~~~~~G~I 176 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS--QD--RKSLGGKI 176 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT--TC--TTCSTTCE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc--cC--CCCCCCEE
Confidence 42 35788886 32 1 3344333333334567889999999999996432110000 00 01235889
Q ss_pred EEEcCCCC--------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCC---EEEEEEecCCcCcceee--------e---
Q 018144 190 LKYDPSSN--------ITTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKLET--------F--- 247 (360)
Q Consensus 190 ~~~d~~tg--------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~---~i~~~~~~g~~~~~~~~--------~--- 247 (360)
+|++++.. ..+.+..++..|+|++++++|+ ||+++.+.. +|.++. .|...+.... +
T Consensus 177 lRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P 254 (347)
T 3das_A 177 LRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDP 254 (347)
T ss_dssp EEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCC
T ss_pred EEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCC
Confidence 99999743 2356777899999999999886 999998653 566553 2222111000 0
Q ss_pred -ccCCC--CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCC---cE
Q 018144 248 -AENLP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDG---TI 319 (360)
Q Consensus 248 -~~~~~--g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g---~~ 319 (360)
..-.+ ..|.|+++. +|.+|++.... ..|.++. .++ +.
T Consensus 255 ~~~~~~~~~ap~G~~~~-~g~~~~~~l~~----------------------------------~~l~~v~~~~~~~~~~~ 299 (347)
T 3das_A 255 VAQWSTDEASPSGIAYA-EGSVWMAGLRG----------------------------------ERLWRIPLKGTAAAADP 299 (347)
T ss_dssp SEEECTTTCCEEEEEEE-TTEEEEEESTT----------------------------------CSEEEEEEETTEESSCC
T ss_pred cEecCCCCCCCcceEEE-cCceeeccccC----------------------------------CEEEEEEecCCceecce
Confidence 00011 247788887 47899987652 3455554 332 11
Q ss_pred EEEEeCCCCCcccceeeEEEE-CCEEEEEeCCC----------CeEEEEeCC
Q 018144 320 IRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTS----------NFIGKVQLS 360 (360)
Q Consensus 320 ~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~----------~~i~~~~l~ 360 (360)
...+.+. ...+..+... +|.||+++.+. ++|.|+.++
T Consensus 300 e~~l~~~----~gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~~ 347 (347)
T 3das_A 300 QAFLEGE----YGRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEVE 347 (347)
T ss_dssp EEESTTT----SSCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEEC
T ss_pred EEeecCC----CCCccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeCC
Confidence 2222222 2347777766 79999997744 489888764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-12 Score=115.83 Aligned_cols=165 Identities=14% Similarity=0.198 Sum_probs=117.0
Q ss_pred CCCcceEEEcCCCCEEEEec-CCeEEEEE--CCeeeEE----------------EecCCeEEEEeC--------------
Q 018144 78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNW----------------KFIDSHLIICDN-------------- 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~--~g~~~~~----------------~~~~g~L~v~~~-------------- 124 (360)
...|.++++|++|.||+++. +++|++++ +|+.+.+ ...+|+||+++.
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 35799999999999999984 58899998 6654432 124688999753
Q ss_pred ----CCcEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC-CCe
Q 018144 125 ----ANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNI 198 (360)
Q Consensus 125 ----~~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg~ 198 (360)
..++++++.++ ++.+... +..|++++++++|++++++.. .++|++|+.+ +|+
T Consensus 148 ~~~~~~~l~~~~~~g~~~~~~~~-----~~~~~gi~~s~dg~~lv~~~~-----------------~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 148 MELPGRWVFRLAPDGTLSAPIRD-----RVKPNGLAFLPSGNLLVSDTG-----------------DNATHRYCLNARGE 205 (296)
T ss_dssp CCSSSCEEEEECTTSCEEEEECC-----CSSEEEEEECTTSCEEEEETT-----------------TTEEEEEEECSSSC
T ss_pred ccCCCcEEEEECCCCCEEEeecC-----CCCCccEEECCCCCEEEEeCC-----------------CCeEEEEEECCCCc
Confidence 24788998557 6554322 346899999999987787654 4678888864 455
Q ss_pred E---E-EEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc-CCC-CEEEEEec
Q 018144 199 T---T-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK 272 (360)
Q Consensus 199 ~---~-~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d-~~G-~lwva~~~ 272 (360)
+ . .+......|.+++++++|+ +|++. .++|.+|++++.. ...+. ...+ |.+++++ ++| .||+++..
T Consensus 206 ~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~---~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 206 TEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDE---LGRVL-TPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCE---EEEEE-CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred CcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCE---EEEEE-CCCC-ceeEEEECCCCCEEEEEcCC
Confidence 5 2 2212345789999999997 88888 5789999987542 22232 1223 8899984 666 59999865
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-12 Score=115.20 Aligned_cols=180 Identities=14% Similarity=0.150 Sum_probs=129.0
Q ss_pred EEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 119 LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
|+++. .+.|.+++ ..+ .+.+... +..|.++++|+ +++||++|.. .++|++++++
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~-----~~~p~g~~~d~~~~~ly~~D~~-----------------~~~I~~~~~~ 60 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLD 60 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC-
T ss_pred EEEEC-CCeEEEEECCCcceEehhcC-----CCceEEEEEEeCCCEEEEEECC-----------------CCcEEEEECC
Confidence 45554 45688888 444 4444322 34688999996 5689999864 4689999987
Q ss_pred C----CeEEEE-eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEE
Q 018144 196 S----NITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIA 269 (360)
Q Consensus 196 t----g~~~~~-~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva 269 (360)
+ ...+.+ ..++..|.|+++++.++.|||++...++|.+++++|.. .+.+.......|.++++|+ +|++|++
T Consensus 61 g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~~~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred CCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc---eEEEEECCCCCcceEEeCCCCCEEEEE
Confidence 5 233333 34678899999998777799999999999999987642 2233322234699999996 6789998
Q ss_pred EecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEE
Q 018144 270 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVI 347 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylg 347 (360)
.... .+.|.+++.+|+....+.... +..+.++..+ +++||++
T Consensus 138 d~~~---------------------------------~~~I~~~~~dG~~~~~~~~~~---~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 138 DWGT---------------------------------PAKIKKGGLNGVDIYSLVTEN---IQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp ECSS---------------------------------SCEEEEEETTSCCEEEEECSS---CSCEEEEEEETTTTEEEEE
T ss_pred ccCC---------------------------------CCeEEEEcCCCCCeEEEEECC---CCCceEEEEeccCCEEEEE
Confidence 8651 258999999998776664322 4567788877 5899999
Q ss_pred eCCCCeEEEEeCC
Q 018144 348 SLTSNFIGKVQLS 360 (360)
Q Consensus 348 s~~~~~i~~~~l~ 360 (360)
....++|.+++++
T Consensus 182 D~~~~~I~~~d~d 194 (316)
T 1ijq_A 182 DSKLHSISSIDVN 194 (316)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEEecC
Confidence 9999999999874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=137.35 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=116.1
Q ss_pred cccccEEEc-CCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d-~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t 226 (360)
..|.+|++| ..|+||++|.. .++|.++++++...+.+. .++..|++|++++++..|||++.
T Consensus 453 ~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp --CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred CCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence 468899999 56799998754 467999998865555554 45789999999998778999998
Q ss_pred CC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 227 WK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 227 ~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
+. ++|++++++|... +++.......|.+|++|++ ++||++...
T Consensus 516 ~~~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~~~~~LY~aD~~-------------------------------- 560 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSK-------------------------------- 560 (699)
T ss_dssp SSSCCEEBCCSSSCCC---CEESCSSCSSCCCEEECTTTCCEEEEETT--------------------------------
T ss_pred CCCCeEEEEeCCCCCe---eEEEeCCCCCccEEEEeccCCEEEEEecC--------------------------------
Confidence 65 7899999887422 2232222346999999964 689999876
Q ss_pred CCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 305 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 305 ~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
...|.+++.+|...+.+....+. +..+.++..++++||+....+++|.+++.
T Consensus 561 --~~~I~~~d~dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 561 --LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp --TTEEEEECSSSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred --CCeEEEEccCCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 35899999988655555432222 45567777788899999999999999863
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-12 Score=114.63 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=118.0
Q ss_pred cccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t 226 (360)
..|.++++|+ +++||++|.. .++|++++++++..+.+. .++..|++++++++++.+||++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETT-----------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECC-----------------CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC
Confidence 4678999997 5689999854 468999999866555443 45679999999998778999999
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 305 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 305 (360)
..++|.++++++... +.+.......|.++++|+ +|++|++....
T Consensus 99 ~~~~I~~~~~~g~~~---~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-------------------------------- 143 (267)
T 1npe_A 99 QLDRIEVAKMDGTQR---RVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-------------------------------- 143 (267)
T ss_dssp TTTEEEEEETTSCSC---EEEECSSCSSEEEEEEETTTTEEEEEECCS--------------------------------
T ss_pred CCCEEEEEEcCCCCE---EEEEECCCCCccEEEEeeCCCEEEEEECCC--------------------------------
Confidence 999999999886432 222222224699999998 57899988641
Q ss_pred CceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 306 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 306 ~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
..+.|.+++.+|+....+.... +..+.++..+ +++||+++...+.|.+++++
T Consensus 144 ~~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 144 DNPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp SSCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 1257889998887665554322 3457777776 47999999999999999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-12 Score=116.85 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=119.1
Q ss_pred CCcceEEEcCC-CCEEEEecCCeEEEEE-CCeeeEE-----------------EecCCeEEEEeCC--------------
Q 018144 79 NHPEDASMDKN-GVIYTATRDGWIKRLQ-DGTWVNW-----------------KFIDSHLIICDNA-------------- 125 (360)
Q Consensus 79 ~~Pe~i~~d~~-G~l~v~~~~G~I~~~~-~g~~~~~-----------------~~~~g~L~v~~~~-------------- 125 (360)
..|.++++|++ |+||+++..++|++++ +|+...+ ...+|+||+++..
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccC
Confidence 57999999999 9999999766899998 7654433 1236789999864
Q ss_pred --CcEEEEcCCC-eEEEeeccCCccccccccEEEc----CCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCC-C
Q 018144 126 --NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-S 196 (360)
Q Consensus 126 --~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d----~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t 196 (360)
.++++++.++ ++.+... ...+++++++ ++| .+|+++.. .++|++||.+ +
T Consensus 151 ~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~~~ 208 (314)
T 1pjx_A 151 KFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKGP 208 (314)
T ss_dssp SCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEET
T ss_pred CCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECCCC
Confidence 3688888547 5554322 2357889999 999 69998753 4678888864 4
Q ss_pred CeEE---EEe--C-CC-cCcceEEEecCCCEEEEEeCCCCEEEEEEec-CCcCcceeeeccCCCCCCceeEEcCCCC-EE
Q 018144 197 NITT---LVA--D-GF-YFANGVALSRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FW 267 (360)
Q Consensus 197 g~~~---~~~--~-~l-~~pngia~~~dg~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lw 267 (360)
++.. .+. . .. ..|.+++++++|+ +|+++...++|.+|+++ +.... .+. .....|.+++++++|+ ||
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~---~~~-~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKM---RIR-CPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSE---EEE-CSSSCEEEEEECTTSSEEE
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeE---EEe-CCCCCceeEEECCCCCEEE
Confidence 5432 111 1 12 5689999999996 88888777899999986 43222 221 1124688999999998 99
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
++...
T Consensus 284 v~~~~ 288 (314)
T 1pjx_A 284 VTEHE 288 (314)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99865
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-12 Score=118.25 Aligned_cols=247 Identities=13% Similarity=0.133 Sum_probs=151.5
Q ss_pred eEecCCCCCCcceEEEcCCCC-EEEEecCCeEEEEE-CCeee------------------EEEec-----CCeEEEEeCC
Q 018144 71 IKVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWV------------------NWKFI-----DSHLIICDNA 125 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g~~~------------------~~~~~-----~g~L~v~~~~ 125 (360)
+.+..+ +..|.+|+++++|. ||++...|+|++++ +|+.. .+... ++.|||+...
T Consensus 11 ~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~ 89 (353)
T 2g8s_A 11 EVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE 89 (353)
T ss_dssp EEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred EEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence 444443 78999999999999 99999889999998 66421 12222 5789998643
Q ss_pred --------CcEEEEc-C-C-C-e---EEEeeccCC--ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccE
Q 018144 126 --------NGLHKVS-E-D-G-V---ENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 126 --------~gl~~~~-~-~-g-~---~~l~~~~~~--~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
..|.+++ . + + + +.+...... .....+++|++++||.|||+....... ....+ .....|+
T Consensus 90 ~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~--~~~q~--~~~~~g~ 165 (353)
T 2g8s_A 90 VGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQR--PTAQD--LDKLQGK 165 (353)
T ss_dssp ECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCG--GGGGC--TTSCTTE
T ss_pred CCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCC--CccCC--CCCCCeE
Confidence 2577776 2 2 2 2 223333221 223568899999999999997542110 00000 1123578
Q ss_pred EEEEcCCCC-------------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCC---EEEEEEecCCcCcc---------
Q 018144 189 LLKYDPSSN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGK--------- 243 (360)
Q Consensus 189 l~~~d~~tg-------------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~---~i~~~~~~g~~~~~--------- 243 (360)
|+|+|+++. ..+.+..++..|+|++++++...||+++.+.. +|.++.. |...+.
T Consensus 166 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~~~ 244 (353)
T 2g8s_A 166 LVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGINY 244 (353)
T ss_dssp EEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSBCT
T ss_pred EEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCCCC
Confidence 999999743 34556678889999999994446999998643 5655432 111110
Q ss_pred ------------eeeecc-----CCCCCCceeEEcC-------CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 244 ------------LETFAE-----NLPGAPDNINLAP-------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 244 ------------~~~~~~-----~~~g~pd~i~~d~-------~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
...+.. .....|.++++.. +|++|++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~--------------------------- 297 (353)
T 2g8s_A 245 SGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK--------------------------- 297 (353)
T ss_dssp TSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT---------------------------
T ss_pred CCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc---------------------------
Confidence 000000 0012477888753 5889999876
Q ss_pred ccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeC-CCCeEEEEe
Q 018144 300 QFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL-TSNFIGKVQ 358 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~-~~~~i~~~~ 358 (360)
.+.|.+++.+ ++......--.+ ....+..+... +|.||+.+. .+.+|.|+.
T Consensus 298 -------~~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 298 -------DKDVIVMSVNGDKVTEDGRILTD-RGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp -------TTEEEEEEEETTEEEEEEEESGG-GCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred -------CCEEEEEEeCCCeEeeeEEcccC-CCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 3577777654 343322111011 12357778877 589999865 678888875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-12 Score=114.89 Aligned_cols=204 Identities=16% Similarity=0.224 Sum_probs=137.5
Q ss_pred ceEEEcCCCCEEEEecCCeEEEEE-CCeee-----------EEEecCCeEEEEeCCCcEEEEcCCC-eEEEeeccCCccc
Q 018144 82 EDASMDKNGVIYTATRDGWIKRLQ-DGTWV-----------NWKFIDSHLIICDNANGLHKVSEDG-VENFLSYVNGSKL 148 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~G~I~~~~-~g~~~-----------~~~~~~g~L~v~~~~~gl~~~~~~g-~~~l~~~~~~~~~ 148 (360)
.++++|++|.||+++.+ |++++ +|+.. .....++.||+++...+++.++.+| ...... ...
T Consensus 63 ~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~-~~~--- 136 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFK-TKK--- 136 (330)
T ss_dssp ECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTTSCEEEEEE-CSS---
T ss_pred cceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCCCCEEEEEc-CCC---
Confidence 46788889999999866 99998 65311 1122388999998888999999447 332212 111
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
.....++++++|++|++. ..++|+++|++ ++... ..........++++++|. +|++.
T Consensus 137 ~~~~~~~~~~~g~l~vgt------------------~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t-- 194 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGS------------------NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS-- 194 (330)
T ss_dssp CCCSCCEECTTSCEEEEC------------------TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--
T ss_pred ceeeeeEEcCCCEEEEEc------------------CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--
Confidence 235567889999999953 34789999998 65533 332334456778888886 87776
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
+.|++++.++...- .+. ........+++|++|++|+++..
T Consensus 195 -~~l~~~d~~g~~~~---~~~-~~~~~~~~~~~~~~g~l~v~t~~----------------------------------- 234 (330)
T 3hxj_A 195 -DKVYAINPDGTEKW---NFY-AGYWTVTRPAISEDGTIYVTSLD----------------------------------- 234 (330)
T ss_dssp -SSEEEECTTSCEEE---EEC-CSSCCCSCCEECTTSCEEEEETT-----------------------------------
T ss_pred -CEEEEECCCCcEEE---EEc-cCCcceeceEECCCCeEEEEcCC-----------------------------------
Confidence 56999984442211 111 11234667889999999999875
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
++|++++++|+.+..+....+. .+.+..+ +|+||+++..+ .|.+++
T Consensus 235 ~gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~~g-gl~~~d 281 (330)
T 3hxj_A 235 GHLYAINPDGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSYDG-HLYAIN 281 (330)
T ss_dssp TEEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEECTTC-EEEEEC
T ss_pred CeEEEECCCCCEeEEeeCCCCc----cccceEcCCCeEEEecCCC-CEEEEC
Confidence 5899999999988887764432 2334455 69999998743 455543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-11 Score=110.04 Aligned_cols=228 Identities=13% Similarity=0.155 Sum_probs=142.0
Q ss_pred CCCcceEEEcCCCCEEEEec---CCeEEEEE--CCeeeEEE--------------ecCC-eEEEEeCCCc-EEEEc--CC
Q 018144 78 VNHPEDASMDKNGVIYTATR---DGWIKRLQ--DGTWVNWK--------------FIDS-HLIICDNANG-LHKVS--ED 134 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~---~G~I~~~~--~g~~~~~~--------------~~~g-~L~v~~~~~g-l~~~~--~~ 134 (360)
...|..++++++|.||+++. ++.|+.++ +|+.+.+. .++| .||+++...+ +..++ .+
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 47899999999999998875 57888887 55432211 1234 4888885544 55555 45
Q ss_pred C-eEEEeec-cCCc------cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC-CCeEEEEe--
Q 018144 135 G-VENFLSY-VNGS------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVA-- 203 (360)
Q Consensus 135 g-~~~l~~~-~~~~------~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg~~~~~~-- 203 (360)
| .+.+... ..+. ....++.+++++||++|+++.. .+.|..|+.+ ++++....
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEEE
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeeeE
Confidence 5 4443221 1111 1234678999999999998653 3467666655 46554322
Q ss_pred --CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC--CcCcceeeeccCCC------CCCceeEEcCCCC-EEEEEec
Q 018144 204 --DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENLP------GAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 204 --~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g--~~~~~~~~~~~~~~------g~pd~i~~d~~G~-lwva~~~ 272 (360)
.....|++++++|||+.+|+++...+.|..|+++. .+......+. ..+ ..|.+++++++|+ +|++...
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 22346889999999999999988888888888763 2211111221 111 2366799999997 7787654
Q ss_pred CchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE--EEEEeCCCCCcccceeeEEEE-C-CEEEEEe
Q 018144 273 LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI--IRNLVDPTGQLMSFVTSGLQV-D-NHLYVIS 348 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~--~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs 348 (360)
.. .-.++.++++|+. +..+... + ..+..+... + ..||+++
T Consensus 261 ~~--------------------------------~v~v~~~~~~g~~~~~~~~~~~-~---~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 261 YN--------------------------------TLAVFAVTADGHLTLIQQISTE-G---DFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp TT--------------------------------EEEEEEECGGGCEEEEEEEECS-S---SCCCEEEECTTSSEEEEEE
T ss_pred CC--------------------------------EEEEEEECCCCcEEEeEEEecC-C---CCcCeEEECCCCCEEEEEE
Confidence 10 1234455555543 3333321 2 235556665 3 5799999
Q ss_pred CCCCeEEEEeC
Q 018144 349 LTSNFIGKVQL 359 (360)
Q Consensus 349 ~~~~~i~~~~l 359 (360)
..++.|.++.+
T Consensus 305 ~~~~~v~v~~~ 315 (347)
T 3hfq_A 305 QNTDNATLYAR 315 (347)
T ss_dssp TTTTEEEEEEE
T ss_pred cCCCcEEEEEE
Confidence 98888888854
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-12 Score=120.29 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=128.4
Q ss_pred CCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 116 DSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
+|+|||++..+.|.+++ .++ ++.+.. .+..|++|+++++|+||++|.... ....+++.++
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~lyVad~~~~-------------~~~~gv~~~~ 213 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGDMVVVDDQSS-------------DTNTGIYLFT 213 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCCEEEEECCSC-------------TTSEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECCCCCEEEEcCCCC-------------cccceEEEEE
Confidence 48999999777799999 577 666543 245799999999999999996421 0123466676
Q ss_pred CCCCeE-EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 194 PSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 194 ~~tg~~-~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
+..+.. ......+..|+|+++++++..|||++..+++|++|+.++.... ...+.......+.+|++|++|+ ||++..
T Consensus 214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 543321 1122257889999999943459999999999999998632220 1222222223456799999998 999987
Q ss_pred cCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC---CcE--EEEEeC---CCC--------Cccccee
Q 018144 272 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED---GTI--IRNLVD---PTG--------QLMSFVT 335 (360)
Q Consensus 272 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~---g~~--~~~~~~---~~g--------~~~~~~t 335 (360)
. ...|.+++.+ ++. ...+.. ..| ..++.+.
T Consensus 293 ~----------------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 293 G----------------------------------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp T----------------------------------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred C----------------------------------CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 6 3578887654 221 112211 111 1355677
Q ss_pred eEEE---------E-CCEEEEEeCCCCeEEEEeC
Q 018144 336 SGLQ---------V-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 336 ~~~~---------~-~g~Lylgs~~~~~i~~~~l 359 (360)
+++. + +|+||++...+++|.++..
T Consensus 339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred cEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 7777 4 5899999999999999863
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-12 Score=120.96 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=127.2
Q ss_pred CCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+++||+++..+.|.+++ ..+ ++.+.. ....|++|+++++|+ ||++|.+.. .....++.+
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~-------------~~~~~v~~~ 210 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQNN-------------NDRPNNYIL 210 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCSC-------------TTSEEEEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCCC-------------cccceEEEE
Confidence 57899999777788898 455 665543 235799999999997 999986521 112356777
Q ss_pred cCCCCeEE--EEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEE
Q 018144 193 DPSSNITT--LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 193 d~~tg~~~--~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 269 (360)
+++ +.+. .....+..|+++++++++..||+++...++|++|++++.... ..+.......|.+|++|++|+ +|++
T Consensus 211 ~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 TRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp EGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred eCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 765 3222 122247789999999944459999999999999998754321 222211224699999999998 9999
Q ss_pred EecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc--E---EEEEeCC-------CC----Ccccc
Q 018144 270 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT--I---IRNLVDP-------TG----QLMSF 333 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~---~~~~~~~-------~g----~~~~~ 333 (360)
... ...|.+++.++. . ...+... +| ..+..
T Consensus 288 d~~----------------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 333 (430)
T 3tc9_A 288 VVN----------------------------------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHA 333 (430)
T ss_dssp ETT----------------------------------TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSS
T ss_pred ECC----------------------------------CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCC
Confidence 876 357888876642 1 1222211 11 12455
Q ss_pred ee-eEEEE---------CCEEEEEeCCCCeEEEEe
Q 018144 334 VT-SGLQV---------DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 334 ~t-~~~~~---------~g~Lylgs~~~~~i~~~~ 358 (360)
+. .+... +|+||+++..+++|.+++
T Consensus 334 P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 334 PRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 65 55543 379999999999999886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-11 Score=108.39 Aligned_cols=183 Identities=9% Similarity=0.070 Sum_probs=123.5
Q ss_pred EEEecCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCcc
Q 018144 111 NWKFIDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 187 (360)
Q Consensus 111 ~~~~~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g 187 (360)
.|...++.||+++.. +.|++++ .++ .+.+.. . ..+.+++++++|++|++. .+
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~--~----~~~~~i~~~~dG~l~v~~-------------------~~ 73 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM--D----APVSSVALRQSGGYVATI-------------------GT 73 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--S----SCEEEEEEBTTSSEEEEE-------------------TT
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC--C----CceEEEEECCCCCEEEEE-------------------CC
Confidence 344446888888865 5788888 555 544321 1 357899999999999963 24
Q ss_pred EEEEEcCCCCeEEEEeC-----CCcCcceEEEecCCCEEEEEeC-----------CCCEEEEEEecCCcCcceeeeccCC
Q 018144 188 QLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDYVVVCES-----------WKFRCRKYWLKGERKGKLETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~-----~l~~pngia~~~dg~~l~v~~t-----------~~~~i~~~~~~g~~~~~~~~~~~~~ 251 (360)
+|+++|+++++++.+.. ....+|++++++||+ +|+++. ..++|++++.++. .......
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~~~~~~~- 147 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH----VKKYFDQ- 147 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC----EEEEEEE-
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC----EEEEeec-
Confidence 79999999888876543 234689999999998 778763 2357888886542 2222211
Q ss_pred CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC---CCCcEE--EEEeC
Q 018144 252 PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA---EDGTII--RNLVD 325 (360)
Q Consensus 252 ~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~---~~g~~~--~~~~~ 325 (360)
...|++++++++|+ +|++... .+.|.+++ .+|+.. +.+..
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~----------------------------------~~~i~~~~~d~~~G~~~~~~~~~~ 193 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSL----------------------------------SYSVDAFDYDLQTGQISNRRSVYK 193 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGG----------------------------------GTEEEEEEECTTTCCEEEEEEEEE
T ss_pred cccccceEEcCCCCEEEEecCC----------------------------------CCcEEEEeccCCCCcccCcEEEEE
Confidence 23589999999995 8888765 24666664 456542 22322
Q ss_pred CCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 326 PTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 326 ~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
... ....+.++..+ +|+||+++..++.|.+++.
T Consensus 194 ~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 194 LEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp CCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred CCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 111 01346677776 5999999999999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-10 Score=103.33 Aligned_cols=206 Identities=14% Similarity=0.166 Sum_probs=140.6
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCeee-E-------------------EEe--cCCeEEEEeC--CCcEEE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWV-N-------------------WKF--IDSHLIICDN--ANGLHK 130 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~~-~-------------------~~~--~~g~L~v~~~--~~gl~~ 130 (360)
..|.+++++++|. +|+++ .++.|..++ +++.. . +.. .++.+|+++. ...++.
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 4689999999887 88888 578899998 45321 1 111 2456898874 245888
Q ss_pred Ec-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC---
Q 018144 131 VS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--- 204 (360)
Q Consensus 131 ~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--- 204 (360)
++ .++ ....... .+ ..+++++++++|+ +|+++. .+.|+.+|..+++......
T Consensus 169 ~d~~~~~~~~~~~~-~~---~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~ 226 (353)
T 3vgz_A 169 VDGGNIKLKTAIQN-TG---KMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNKILSRKKLLD 226 (353)
T ss_dssp EETTTTEEEEEECC-CC---TTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTEEEEEEECCC
T ss_pred EcCCCCceEEEecC-CC---CccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCeEEEEEEcCC
Confidence 88 566 3322111 11 2478999999985 777532 4689999998887654322
Q ss_pred --CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHh
Q 018144 205 --GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKIL 281 (360)
Q Consensus 205 --~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~ 281 (360)
....++++++++||+.+|+++...+.|..|+.+..+. ...+. . +.|.+++++++|+ +|++...
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~-~~~~~~~~s~dg~~l~v~~~~--------- 292 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVA--A-PESLAVLFNPARNEAYVTHRQ--------- 292 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEE--C-SSCCCEEEETTTTEEEEEETT---------
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEE--c-CCCceEEECCCCCEEEEEECC---------
Confidence 1345778999999999999998888999999854321 11221 1 2367899999997 8888764
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-C-CEEEEEeCC
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLT 350 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~ 350 (360)
.+.|..+|. +++++..+..+. .+..+... + ..||+++..
T Consensus 293 -------------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 293 -------------------------AGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -------------------------TTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred -------------------------CCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence 357888886 577777776532 35566665 3 569998765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-11 Score=110.69 Aligned_cols=174 Identities=13% Similarity=0.170 Sum_probs=119.6
Q ss_pred CCCCCcceEEEcCCCCEEEEec------CCeEEEEE--CCee-eEEE----------------e--cCCeEEEEeC---C
Q 018144 76 GSVNHPEDASMDKNGVIYTATR------DGWIKRLQ--DGTW-VNWK----------------F--IDSHLIICDN---A 125 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~l~v~~~------~G~I~~~~--~g~~-~~~~----------------~--~~g~L~v~~~---~ 125 (360)
+.+..|.+|++|++|+||+.+. .++|++++ +|+. ..+. . .+|.+||++. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3478999999999999999883 47899999 5762 2221 1 2468999986 3
Q ss_pred -CcEEEEc-CCC-eEEEeec------------cCCccc-------------cccccEEEcCCC-cEEEEeCCCCCCCccc
Q 018144 126 -NGLHKVS-EDG-VENFLSY------------VNGSKL-------------RFANDVVEASDG-SLYFTVSSSKYLPHEY 176 (360)
Q Consensus 126 -~gl~~~~-~~g-~~~l~~~------------~~~~~~-------------~~~n~l~~d~dG-~l~vtd~~~~~~~~~~ 176 (360)
.+++.++ .++ ...+... .++..+ ..+|+|++++|| .+|+++..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------- 215 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------- 215 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--------
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--------
Confidence 6788888 566 4433211 011111 247999999999 59998754
Q ss_pred eecccccCCccEEEEEcCC---CCe---------EEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe-cCCcCcc
Q 018144 177 CLDILEGKPHGQLLKYDPS---SNI---------TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL-KGERKGK 243 (360)
Q Consensus 177 ~~~~~~~~~~g~l~~~d~~---tg~---------~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~-~g~~~~~ 243 (360)
..+|++++.. .+. +... .....|+|++++++|+ +|+++...++|.+|+. +|.
T Consensus 216 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~---- 280 (343)
T 2qe8_A 216 ---------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA---- 280 (343)
T ss_dssp ---------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE----
T ss_pred ---------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC----
Confidence 3478888642 111 1111 1234799999999986 9999999999999998 442
Q ss_pred eeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 018144 244 LETFAEN-LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 244 ~~~~~~~-~~g~pd~i~~d~~G~lwva~~~ 272 (360)
...+... ....|++++++++|++||+...
T Consensus 281 ~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 281 YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 2333221 1236999999999999999875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-11 Score=110.38 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=116.5
Q ss_pred CCcceEEEcCCCCEEEEec-CCeEEEEE-CCeeeEE----------------EecCCeEEEEeC----------------
Q 018144 79 NHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNW----------------KFIDSHLIICDN---------------- 124 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~g~~~~~----------------~~~~g~L~v~~~---------------- 124 (360)
..|.++++|++|+||+++. +++|++++ +|+.+.+ ...+|+||+++.
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 5689999999999999984 57899998 7755432 124788999652
Q ss_pred --CCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE
Q 018144 125 --ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 199 (360)
Q Consensus 125 --~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~ 199 (360)
..+|++++ .+| ++.+. . +..|+++++++||+ ||++|..... ...++|++|+.+++.+
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~~------------~~~~~i~~~~~~~~~l 227 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQG------------HGSVEITAFAWRDGAL 227 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTEE
T ss_pred cCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCcC------------CCCCEEEEEEecCCCc
Confidence 24689999 467 66653 2 35689999999996 9998764110 0125788887654432
Q ss_pred E---EEeC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 200 T---LVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 200 ~---~~~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
. .+.. ....|.|++++++|+ +|++. .++|.+|++++.... .+. .+..|.+++++++| .||+++..
T Consensus 228 ~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~~~---~~~--~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 228 HDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQLLG---HIP--TPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCEEE---EEE--CSSCCCEEEECTTSCEEEEEETT
T ss_pred cCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCEEE---EEE--CCCceeEEEEeCCCCEEEEEcCC
Confidence 1 1221 245689999999998 88887 357999998764332 222 22348899998777 59998865
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-10 Score=102.61 Aligned_cols=212 Identities=11% Similarity=0.095 Sum_probs=140.4
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE-CCeee-EE------------EecCCeEEEEeCC-C-cEEEEcCCC--eEEEe
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWV-NW------------KFIDSHLIICDNA-N-GLHKVSEDG--VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~-~~------------~~~~g~L~v~~~~-~-gl~~~~~~g--~~~l~ 140 (360)
..+.+++++++|++++ +.+++|+.++ +|+.. .+ ...+|++++++.. . .++.++++| +..+.
T Consensus 37 ~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~ 115 (276)
T 3no2_A 37 WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTE 115 (276)
T ss_dssp CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence 4688999999999999 5566788888 66421 11 1236778887765 3 577788777 33332
Q ss_pred eccC-CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~-~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
.... ......+..+.++++|++++++.. .++|+.+|++ |+..........|.++...++|+
T Consensus 116 ~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~ 177 (276)
T 3no2_A 116 FETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD 177 (276)
T ss_dssp ECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC
T ss_pred ccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcCCCC
Confidence 1111 122346778899999999998653 5789999998 76654433335688899999997
Q ss_pred EEEEEeCCCCEEEEEEec-CCcCcceeeeccCCC----CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhC
Q 018144 220 YVVVCESWKFRCRKYWLK-GERKGKLETFAENLP----GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 294 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~~~~----g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~ 294 (360)
+++++..+++|..++++ |+..-++.. ...+ ..|.++.+.++|+++|+....... + .
T Consensus 178 -~~v~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~--~---~----------- 238 (276)
T 3no2_A 178 -CLVACGDAHCFVQLNLESNRIVRRVNA--NDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR--E---A----------- 238 (276)
T ss_dssp -EEEECBTTSEEEEECTTTCCEEEEEEG--GGSBSCCCSEEEEEEECTTSCEEEEEECTTCT--T---G-----------
T ss_pred -EEEEeCCCCeEEEEeCcCCcEEEEecC--CCCCCccccccccceEcCCCCEEEEeccCccc--c---c-----------
Confidence 66777777899999987 543222211 1111 247889999999999998642100 0 0
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEE
Q 018144 295 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGL 338 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~ 338 (360)
.......+++++++|+++..|.+... +..++++.
T Consensus 239 --------~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~~~~~~ 272 (276)
T 3no2_A 239 --------GKGKHPQLVEIDSEGKVVWQLNDKVK--FGMISTIC 272 (276)
T ss_dssp --------GGSCCCSEEEECTTSBEEEEECCTTT--SCCCCEEE
T ss_pred --------cccCCceEEEECCCCCEEEEecCccc--ccceeeee
Confidence 00013479999999999999877543 45566653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=117.08 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=132.6
Q ss_pred CCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEE-------cCCCc-EEEEeCCCCCCCccceecccccC
Q 018144 116 DSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE-------ASDGS-LYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~-------d~dG~-l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
+++|||++.. +++.++| +++ ++.+..... ..+..|++|++ +++|. ||++|...... .
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~-----------~ 218 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG-----------D 218 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG-----------G
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc-----------c
Confidence 4789999875 5788899 666 777654322 24567999999 99996 99998752100 0
Q ss_pred CccEEEEEcCCC-CeEE-----EEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec-------CCcCc-----c---
Q 018144 185 PHGQLLKYDPSS-NITT-----LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-------GERKG-----K--- 243 (360)
Q Consensus 185 ~~g~l~~~d~~t-g~~~-----~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~-------g~~~~-----~--- 243 (360)
....++.++++. |++. .....+..|+|++++++++.||+++...++|++|+++ +.... .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 123577786543 3332 1222567899999999777799999999999999987 33320 0
Q ss_pred -e-eeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc--
Q 018144 244 -L-ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-- 318 (360)
Q Consensus 244 -~-~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-- 318 (360)
. +.+.......|.+|++|++|+ +||+... ...|.+++.++.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~----------------------------------~h~I~kid~dg~~~ 344 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN----------------------------------NHYFMRSDYDEIKK 344 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETT----------------------------------TTEEEEEEEETTTT
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCC----------------------------------CCEEEEEecCCCcc
Confidence 1 222211223588999999998 8999876 358888776553
Q ss_pred EE---EEEeC---C----CC----Cccccee-eEEEE--------CCEEEEEeCCCCeEEEEeC
Q 018144 319 II---RNLVD---P----TG----QLMSFVT-SGLQV--------DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 319 ~~---~~~~~---~----~g----~~~~~~t-~~~~~--------~g~Lylgs~~~~~i~~~~l 359 (360)
.+ ..+.. . +| ..++.+. .+..+ +|.||++...+++|.++..
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 22 22221 1 12 1356677 55654 4899999999999999863
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-10 Score=101.98 Aligned_cols=225 Identities=11% Similarity=0.100 Sum_probs=140.1
Q ss_pred CCCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCee-e-E----------EE-ecCC-eEEEEeCCC---cEEEEc-CCC
Q 018144 78 VNHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTW-V-N----------WK-FIDS-HLIICDNAN---GLHKVS-EDG 135 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~-~-~----------~~-~~~g-~L~v~~~~~---gl~~~~-~~g 135 (360)
...| +++++++|. +|+++ .++.|+.++ +++. . . +. .++| .||++.... .+..++ .++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 4566 999999886 88888 488999999 5553 1 1 11 1234 466433332 577777 556
Q ss_pred -eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCc-cEEEEEcCCCCeEE----EEeCCCcC
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSNITT----LVADGFYF 208 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tg~~~----~~~~~l~~ 208 (360)
....... + ..++++++++||+ +|+++... .. -.++.++.+ +.+. ........
T Consensus 119 ~~~~~~~~--~---~~~~~~~~spdg~~l~~~~~~~---------------~~~i~~~~~~~~-g~~~~~~~~~~~~~~~ 177 (331)
T 3u4y_A 119 KFISTIPI--P---YDAVGIAISPNGNGLILIDRSS---------------ANTVRRFKIDAD-GVLFDTGQEFISGGTR 177 (331)
T ss_dssp EEEEEEEC--C---TTEEEEEECTTSSCEEEEEETT---------------TTEEEEEEECTT-CCEEEEEEEEECSSSS
T ss_pred CeEEEEEC--C---CCccceEECCCCCEEEEEecCC---------------CceEEEEEECCC-CcEeecCCccccCCCC
Confidence 3222111 1 2468999999995 99986431 11 134455433 3321 12233456
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchh
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKL 286 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~ 286 (360)
|.++++++||+.+|++....+.|..|+++..+. .....+. ....|.+++++++|+ +|++...
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~-------------- 241 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES-------------- 241 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS--------------
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC--------------
Confidence 899999999999999998888999999864332 1122222 234688999999998 7887654
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCC-CcE--EEEEeCC---CCCcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI--IRNLVDP---TGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~--~~~~~~~---~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|..+|.+ |++ +..+... .+........+... +.+||+++..++.|.+++
T Consensus 242 --------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 242 --------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp --------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 3578888865 555 3333221 11111111334443 467999999999999988
Q ss_pred CC
Q 018144 359 LS 360 (360)
Q Consensus 359 l~ 360 (360)
++
T Consensus 302 ~~ 303 (331)
T 3u4y_A 302 IS 303 (331)
T ss_dssp TT
T ss_pred ec
Confidence 64
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-10 Score=106.68 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=124.5
Q ss_pred cCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 115 IDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 115 ~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
.+|+||+++.. .+|++++ .++ ++.+.... ...+.+++++++|++|+++... ....++|++
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~-------------~~~~~~i~~ 116 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGD-------------FKSTGGIFA 116 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTT-------------SSSCCEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCC-------------CCCCceEEE
Confidence 57889987654 5799999 566 55543211 1358899999999999986431 001258999
Q ss_pred EcCCCCeEEEEeC---CCcCcceEEEecCCCEEEEEeCC------CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 192 YDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 192 ~d~~tg~~~~~~~---~l~~pngia~~~dg~~l~v~~t~------~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
+|+++++.+.+.. ....+++++++++|+ +|++... ..+|++++.++.+. ..+... ...|.++++++
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~i~~~~ 191 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQN-ISVANGIALST 191 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCE---EEEEEE-ESSEEEEEECT
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEE---EEeecC-CCcccceEECC
Confidence 9998887764332 234689999999997 7787764 36799998764322 222211 12478999999
Q ss_pred CCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCcEEEEE-----eCCCCCcccce
Q 018144 263 DGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIRNL-----VDPTGQLMSFV 334 (360)
Q Consensus 263 ~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~-----~~~~g~~~~~~ 334 (360)
+|+ +|++... .+.|.+++. +|+.+..+ ....+ ...+
T Consensus 192 dg~~l~v~~~~----------------------------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~ 235 (333)
T 2dg1_A 192 DEKVLWVTETT----------------------------------ANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGP 235 (333)
T ss_dssp TSSEEEEEEGG----------------------------------GTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEE
T ss_pred CCCEEEEEeCC----------------------------------CCeEEEEEecCCCcCcccccceEEEecCC--CCCC
Confidence 996 9998754 246777775 55543322 11112 1245
Q ss_pred eeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 335 TSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 335 t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
..+..+ +|+||+++..++.|.+++.
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC
Confidence 667776 5899999988888988864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-10 Score=101.23 Aligned_cols=205 Identities=11% Similarity=0.109 Sum_probs=133.9
Q ss_pred ceEecCCCCCCcceEEEcCCCCEEEEec---CCeEEEEE--CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEeeccC
Q 018144 70 FIKVGEGSVNHPEDASMDKNGVIYTATR---DGWIKRLQ--DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVN 144 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G~l~v~~~---~G~I~~~~--~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~~ 144 (360)
...++.+.-..|++++++++|.||+++. ++.|.++| +|++..- +. .+
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------------------------i~--l~ 63 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI--------------------------HK--MD 63 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE--------------------------EE--CC
T ss_pred EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE--------------------------Ee--cC
Confidence 3455555445688999988788888863 34566666 4443221 10 01
Q ss_pred CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEE
Q 018144 145 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~ 224 (360)
. ..+..+++++ +++||+++.. .+.++.||+++.++....... .|.|+.+++||+.+|++
T Consensus 64 ~--~~fgeGi~~~-g~~lyv~t~~-----------------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs 122 (266)
T 2iwa_A 64 D--SYFGEGLTLL-NEKLYQVVWL-----------------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGS 122 (266)
T ss_dssp T--TCCEEEEEEE-TTEEEEEETT-----------------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEE
T ss_pred C--CcceEEEEEe-CCEEEEEEec-----------------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEE
Confidence 1 1234466776 3589998532 578999999888765433211 47788888899999999
Q ss_pred eCCCCEEEEEEecCCcC-cceeeeccCCC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 225 ESWKFRCRKYWLKGERK-GKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 225 ~t~~~~i~~~~~~g~~~-~~~~~~~~~~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
+ +.+.|..+|++..+. ....+-....+ ..|+.+.+. +|.+|++.+.
T Consensus 123 ~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~------------------------------ 170 (266)
T 2iwa_A 123 D-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ------------------------------ 170 (266)
T ss_dssp C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------------------------------
T ss_pred C-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC------------------------------
Confidence 8 578999999865322 11111110011 146677777 7899998875
Q ss_pred cCCCceEEEEECC-CCcEEEEEeCCCC---------CcccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 303 TLGGGAHLIHVAE-DGTIIRNLVDPTG---------QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 303 ~~~~~~~v~~~~~-~g~~~~~~~~~~g---------~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|.++|+ .|+++..+.-+.. .......++..+ +++||+++-..+.|.+++|
T Consensus 171 ----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 171 ----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp ----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 368999997 6889888865310 011345677776 3799999999999999876
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=98.03 Aligned_cols=177 Identities=13% Similarity=0.181 Sum_probs=122.5
Q ss_pred ecCCeEEEEeCCCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 114 FIDSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 114 ~~~g~L~v~~~~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
.++|++++ +..++++.++++| +..+... .. ..++.+.+.++|++++++.. ..++++.
T Consensus 45 ~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~-~~---~~~~~~~~~~dG~~lv~~~~----------------~~~~v~~ 103 (276)
T 3no2_A 45 TKAGEILF-SYSKGAKMITRDGRELWNIAAP-AG---CEMQTARILPDGNALVAWCG----------------HPSTILE 103 (276)
T ss_dssp CTTSCEEE-ECBSEEEEECTTSCEEEEEECC-TT---CEEEEEEECTTSCEEEEEES----------------TTEEEEE
T ss_pred CCCCCEEE-eCCCCEEEECCCCCEEEEEcCC-CC---ccccccEECCCCCEEEEecC----------------CCCEEEE
Confidence 35788998 4567899999777 3333221 11 13456788899999998642 1468999
Q ss_pred EcCCCCeEEEEe--C----CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 192 YDPSSNITTLVA--D----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 192 ~d~~tg~~~~~~--~----~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
+|++...+..+. . ....+.+++..++|+ ++++....++|..|+.+|+..-+ + ..++.|.+....++|+
T Consensus 104 vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~~~w~---~--~~~~~~~~~~~~~~g~ 177 (276)
T 3no2_A 104 VNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPNGQLLNS---V--KLSGTPFSSAFLDNGD 177 (276)
T ss_dssp ECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTTSCEEEE---E--ECSSCCCEEEECTTSC
T ss_pred EeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCCCCEEEE---E--ECCCCccceeEcCCCC
Confidence 998633333322 1 123577889999998 66788888999999987543222 1 1234577889999999
Q ss_pred EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCC--CCCcccceeeEEEE-C
Q 018144 266 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDP--TGQLMSFVTSGLQV-D 341 (360)
Q Consensus 266 lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~--~g~~~~~~t~~~~~-~ 341 (360)
++|+... .+.|+.+|++ |+++..+... .+..+..++++... +
T Consensus 178 ~~v~~~~----------------------------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~ 223 (276)
T 3no2_A 178 CLVACGD----------------------------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN 223 (276)
T ss_dssp EEEECBT----------------------------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT
T ss_pred EEEEeCC----------------------------------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC
Confidence 9998765 3589999998 9999998743 23335567777665 6
Q ss_pred CEEEEEeCCC
Q 018144 342 NHLYVISLTS 351 (360)
Q Consensus 342 g~Lylgs~~~ 351 (360)
|++|+++..+
T Consensus 224 G~i~v~~~~g 233 (276)
T 3no2_A 224 GGLYICNWQG 233 (276)
T ss_dssp SCEEEEEECT
T ss_pred CCEEEEeccC
Confidence 9999999744
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=106.90 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=124.6
Q ss_pred ecCCeEEEEeCCCcEEEEcCCC-eEEEeec-cCCccccccccEEEcCC----CcEEEEeCCCCCCCccceecccccCCcc
Q 018144 114 FIDSHLIICDNANGLHKVSEDG-VENFLSY-VNGSKLRFANDVVEASD----GSLYFTVSSSKYLPHEYCLDILEGKPHG 187 (360)
Q Consensus 114 ~~~g~L~v~~~~~gl~~~~~~g-~~~l~~~-~~~~~~~~~n~l~~d~d----G~l~vtd~~~~~~~~~~~~~~~~~~~~g 187 (360)
.++|+|||++....|++++ +| .+.+... ........|++|+++++ |.||+++.... ....+
T Consensus 39 ~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~------------~~~~~ 105 (352)
T 2ism_A 39 LPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE------------GGLRN 105 (352)
T ss_dssp CTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT------------TSSEE
T ss_pred cCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC------------CCCcc
Confidence 3578899998777788887 56 4444321 11112357899999997 79999875310 00125
Q ss_pred EEEEEcCCCCe---EEEEeC-------CCcCcceEEEecCCCEEEEEeC-------------CCCEEEEEEecCCcC---
Q 018144 188 QLLKYDPSSNI---TTLVAD-------GFYFANGVALSRDEDYVVVCES-------------WKFRCRKYWLKGERK--- 241 (360)
Q Consensus 188 ~l~~~d~~tg~---~~~~~~-------~l~~pngia~~~dg~~l~v~~t-------------~~~~i~~~~~~g~~~--- 241 (360)
+|.+++.++++ .+.+.+ ..+.++++++++||. ||++.. ..++|+|++.+|...
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 78898876442 222221 245789999999995 999963 236899999876210
Q ss_pred -------cceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE
Q 018144 242 -------GKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 313 (360)
Q Consensus 242 -------~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (360)
...+++...+ ..|.++++|+ +|+||++..+.... +. .| ...|.++
T Consensus 185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~-----------~~----~~-----------~dei~~i 237 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGE-----------QG----YG-----------HDEVNLI 237 (352)
T ss_dssp TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC---------------------C-----------CCEEEEE
T ss_pred cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCC-----------CC----CC-----------CeEEEEe
Confidence 1233443222 2489999999 89999999873210 00 00 1234444
Q ss_pred CCCCc-----------------EEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 314 AEDGT-----------------IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 314 ~~~g~-----------------~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.+. .+..+ +. ...++++...+|+||++++.+.+|.+++++
T Consensus 238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~--~~---~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 238 VPGGNYGWPRVVGRGNDPRYRDPLYFW--PQ---GFPPGNLAFFRGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp CTTCBCCTTTCCSCCCCTTSCCCSEEC--TT---CCCEEEEEEETTEEEEEETTTTEEEEEEEE
T ss_pred ccCCcCCCCcccCCCCCCCCcCCeEec--CC---CCCCcceEEECCEEEEEECCCCEEEEEEEC
Confidence 43221 11111 10 124677888899999999999999998763
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=125.95 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCeEEEEeCC-CcEEEEcCCC--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
+++||+++.. +.|.+++.+| .+.+.. ..+..|++|++|+ .|.||+||.. ..++|++
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~ 523 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKK 523 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEB
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEE
Confidence 4555555543 3455555333 333321 1135689999997 5789998854 1257888
Q ss_pred EcCCCCeEEEE-eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEE
Q 018144 192 YDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 192 ~d~~tg~~~~~-~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwv 268 (360)
++++....+.+ ...+..||||+++++++.|||+++..++|.+++++|.. .+.+... ....|++|++|.+ +||+
T Consensus 524 ~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lyw 599 (699)
T 1n7d_A 524 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFW 599 (699)
T ss_dssp CCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEE
T ss_pred EeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEE
Confidence 88764333333 34688999999999888899999999999999998632 2333321 2347999999986 6777
Q ss_pred EEec
Q 018144 269 AIIK 272 (360)
Q Consensus 269 a~~~ 272 (360)
+.+.
T Consensus 600 td~~ 603 (699)
T 1n7d_A 600 TDII 603 (699)
T ss_dssp ECST
T ss_pred EeCC
Confidence 7765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-09 Score=101.47 Aligned_cols=147 Identities=9% Similarity=0.033 Sum_probs=95.3
Q ss_pred ecCCeEEEEeCCCcEEEEcCCCeEEEee-ccCCccccccccEEEcCC----CcEEEEeCC-CCCCCccceecccccCCcc
Q 018144 114 FIDSHLIICDNANGLHKVSEDGVENFLS-YVNGSKLRFANDVVEASD----GSLYFTVSS-SKYLPHEYCLDILEGKPHG 187 (360)
Q Consensus 114 ~~~g~L~v~~~~~gl~~~~~~g~~~l~~-~~~~~~~~~~n~l~~d~d----G~l~vtd~~-~~~~~~~~~~~~~~~~~~g 187 (360)
.++|+|||++....|++++.+|.+.+.. .........+.+|+++++ |.||++++. .. .+...+
T Consensus 37 ~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~-----------~~~~~~ 105 (354)
T 3a9g_A 37 LGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE-----------GGHIRN 105 (354)
T ss_dssp EETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG-----------GGCEEE
T ss_pred cCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC-----------CCCcce
Confidence 3578999999887788887555322221 111112346899999996 899998642 00 001125
Q ss_pred EEEEEcCCCC--e---EEEEe-----CCCcCcceEEEecCCCEEEEEeCC-------------CCEEEEEEecCCcC---
Q 018144 188 QLLKYDPSSN--I---TTLVA-----DGFYFANGVALSRDEDYVVVCESW-------------KFRCRKYWLKGERK--- 241 (360)
Q Consensus 188 ~l~~~d~~tg--~---~~~~~-----~~l~~pngia~~~dg~~l~v~~t~-------------~~~i~~~~~~g~~~--- 241 (360)
+|++++.+.+ . .+.+. ...+.++++++++||. ||++... .++|+|++.+|...
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 7889887644 1 22222 1345789999999996 9998532 35899999876411
Q ss_pred --cceeeeccCCCCCCceeEEcC-CCCEEEEEecC
Q 018144 242 --GKLETFAENLPGAPDNINLAP-DGTFWIAIIKL 273 (360)
Q Consensus 242 --~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~ 273 (360)
...+++...+ ..|.++++|+ +|+||++....
T Consensus 185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~ 218 (354)
T 3a9g_A 185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGP 218 (354)
T ss_dssp SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCS
T ss_pred CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCC
Confidence 0234554322 2589999999 89999999873
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-09 Score=105.10 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=103.8
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEecCC-eEEEEE--CCeeeE-------------------EEec-----CCeEEEEe
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATRDG-WIKRLQ--DGTWVN-------------------WKFI-----DSHLIICD 123 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G-~I~~~~--~g~~~~-------------------~~~~-----~g~L~v~~ 123 (360)
+.+..+ +..|++|+++++|.||++...| +|++++ +|+.+. ++.. ++.|||+.
T Consensus 20 ~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 20 KVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 455554 8999999999999999999765 799998 464332 2222 57799987
Q ss_pred CC-------------CcEEEEc-C--CC-e---EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCC-----ccce-
Q 018144 124 NA-------------NGLHKVS-E--DG-V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP-----HEYC- 177 (360)
Q Consensus 124 ~~-------------~gl~~~~-~--~g-~---~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~-----~~~~- 177 (360)
.. ..|++++ . ++ + +.+...........++.|++++||+|||+........ ....
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~ 178 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQA 178 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCT
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccc
Confidence 52 3677776 2 22 2 3343333333346789999999999999964321100 0000
Q ss_pred ---------ecccccCCccEEEEEcCCCC-----------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 178 ---------LDILEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 178 ---------~~~~~~~~~g~l~~~d~~tg-----------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
..--.....|.|+|++++.. ..+.+..++..|.|++++++|+ ||+++.+..
T Consensus 179 ~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~ 249 (454)
T 1cru_A 179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN 249 (454)
T ss_dssp TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred ccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence 00000123589999999744 3466778899999999999876 999997543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-10 Score=102.47 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=108.3
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..|.+++++++|+||++|.. .++|+++|++++ ..........|+|+++++||+ +|+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~-----------------~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~-l~vad~~~ 92 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGD-LVATGWNA 92 (306)
T ss_dssp CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTCC-EEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCC-----------------CCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCc-EEEEeccC
Confidence 46899999999999999853 568999999854 443333345799999999998 89999653
Q ss_pred --CEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 018144 229 --FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 305 (360)
Q Consensus 229 --~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 305 (360)
.+|++++....+ .+.+.+. ...++++++.+.++++|++...
T Consensus 93 ~~~~v~~~d~~~g~---~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~--------------------------------- 136 (306)
T 2p4o_A 93 DSIPVVSLVKSDGT---VETLLTLPDAIFLNGITPLSDTQYLTADSY--------------------------------- 136 (306)
T ss_dssp TSCEEEEEECTTSC---EEEEEECTTCSCEEEEEESSSSEEEEEETT---------------------------------
T ss_pred CcceEEEEcCCCCe---EEEEEeCCCccccCcccccCCCcEEEEECC---------------------------------
Confidence 458888864332 3333221 2236888888888889998754
Q ss_pred CceEEEEECCCCcEEEEE-e-------CCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 306 GGAHLIHVAEDGTIIRNL-V-------DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 306 ~~~~v~~~~~~g~~~~~~-~-------~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.|+++|+++.....+ . .+.+. +..+.++..++++||+++..+++|.+++++
T Consensus 137 -~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngis~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 137 -RGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGLKRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp -TTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred -CCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCcCcCCCEEEEEeCCCCEEEEEEeC
Confidence 36899999865321111 1 11111 345566655678999999999999999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-08 Score=93.62 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=135.8
Q ss_pred CCCcceEEEcCCCC-EEEEecC----CeEE--EEE-C-CeeeEE-------------EecCCeEEEEeCCCc-EEEEc--
Q 018144 78 VNHPEDASMDKNGV-IYTATRD----GWIK--RLQ-D-GTWVNW-------------KFIDSHLIICDNANG-LHKVS-- 132 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~~~----G~I~--~~~-~-g~~~~~-------------~~~~g~L~v~~~~~g-l~~~~-- 132 (360)
...|..++++++|. ||+++.+ |.|. .++ + |+.+.+ ...+..||+++...+ +..++
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeC
Confidence 57899999999986 7887764 6664 455 3 644322 222445788776544 44555
Q ss_pred CCC-eEEEee--ccCCc-------cccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEE--EEEcCCCC--
Q 018144 133 EDG-VENFLS--YVNGS-------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYDPSSN-- 197 (360)
Q Consensus 133 ~~g-~~~l~~--~~~~~-------~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~tg-- 197 (360)
.++ +..+.. ...+. ....++++++++||+ +|+++.. .+.+ +.++..++
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNANAD 191 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCCTT
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCCcc
Confidence 333 321110 01110 112457799999996 8998643 2344 44455544
Q ss_pred --e-E-------EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCC
Q 018144 198 --I-T-------TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGT 265 (360)
Q Consensus 198 --~-~-------~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~ 265 (360)
+ + .........|++++++|||+.+|++....+.|..|+++.........+... ....|.+++++++|+
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~ 271 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK 271 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence 2 2 112233457899999999999999998788999999864332222222111 112356899999997
Q ss_pred -EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE--EEEEeCCCCCcccceeeEEEE-
Q 018144 266 -FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI--IRNLVDPTGQLMSFVTSGLQV- 340 (360)
Q Consensus 266 -lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~--~~~~~~~~g~~~~~~t~~~~~- 340 (360)
||++.... ...-.|+.+++ +|+. +..+.. |. .+..+...
T Consensus 272 ~l~v~~~~~-------------------------------~~~i~v~~~~~~~g~~~~~~~~~~--g~---~~~~~~~sp 315 (361)
T 3scy_A 272 YLYASNRLK-------------------------------ADGVAIFKVDETNGTLTKVGYQLT--GI---HPRNFIITP 315 (361)
T ss_dssp EEEEEECSS-------------------------------SCEEEEEEECTTTCCEEEEEEEEC--SS---CCCEEEECT
T ss_pred EEEEECCCC-------------------------------CCEEEEEEEcCCCCcEEEeeEecC--CC---CCceEEECC
Confidence 66765430 01135666774 4653 333333 32 34556665
Q ss_pred C-CEEEEEeCCCCeEEEEeC
Q 018144 341 D-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 341 ~-g~Lylgs~~~~~i~~~~l 359 (360)
+ ..||+++..++.|.++.+
T Consensus 316 dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 316 NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp TSCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEE
Confidence 3 569999988899988654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=104.62 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=114.1
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeEE----------------EecCCeEEEEeCC-------CcEEEEcC
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW----------------KFIDSHLIICDNA-------NGLHKVSE 133 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~----------------~~~~g~L~v~~~~-------~gl~~~~~ 133 (360)
..|.+++++++|.+|+++.+ +|++++ +|+.+.+ ...+|++|+++.. .++++++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence 46889999999999999854 599998 5654322 1246789998752 4788888
Q ss_pred CC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCC--CC-eE---EEEe--
Q 018144 134 DG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN-IT---TLVA-- 203 (360)
Q Consensus 134 ~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tg-~~---~~~~-- 203 (360)
+| ++.+... ...++++++++|| .+|++|.. .++|+++|.+ +| ++ +.+.
T Consensus 168 ~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~~ 225 (326)
T 2ghs_A 168 KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDS 225 (326)
T ss_dssp TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEEC
Confidence 67 6554322 2357899999999 49998753 4578888864 55 32 1221
Q ss_pred -CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc-CCC-CEEEEEec
Q 018144 204 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK 272 (360)
Q Consensus 204 -~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d-~~G-~lwva~~~ 272 (360)
.....|.+++++++|+ +|++....++|.+|++++... ..+. .....|.+++++ +++ .|||++..
T Consensus 226 ~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~~---~~i~-~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 226 TGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHI---ARYE-VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEE---EEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCEE---EEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence 1235689999999997 888887778999999855322 2222 111247788887 665 69998865
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-08 Score=92.76 Aligned_cols=218 Identities=14% Similarity=0.158 Sum_probs=147.6
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCeeeE----------EEe--cCCeEEEEeCC-CcEEEEc-CCC-eEEE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN----------WKF--IDSHLIICDNA-NGLHKVS-EDG-VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~~~----------~~~--~~g~L~v~~~~-~gl~~~~-~~g-~~~l 139 (360)
..|.+++++++|. ||++. .++.|..++ +++... +.. .+..||++... +.+..++ .++ ....
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 4688999999886 66665 788999998 554322 111 23458887755 5677777 566 3222
Q ss_pred eeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
... + ..+.+++++++|+ +|++.. ..+.|..+|..+++..........++++++++|+
T Consensus 112 ~~~--~---~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg 169 (391)
T 1l0q_A 112 VKT--G---KSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG 169 (391)
T ss_dssp EEC--S---SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred EeC--C---CCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCCC
Confidence 221 1 2467899999996 778743 3578999999888876655555678999999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
+.+|++....+.|..+++...+. ...+. ....+..++++++|+ +|++....
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~------------------------ 221 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVTNSV--IDTVK--VEAAPSGIAVNPEGTKAYVTNVDK------------------------ 221 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSEEEEEEECTTSSEEEEEEECS------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCeE--EEEEe--cCCCccceEECCCCCEEEEEecCc------------------------
Confidence 99999988888999999864321 11221 233577889999995 67766410
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 298 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
..+.|..+|. +++.+..+.... .+..+... +.+||+++-..+.|.++++
T Consensus 222 --------~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 222 --------YFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp --------SCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred --------CCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 0257888885 466666665432 34555554 3578888888888888875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-09 Score=94.29 Aligned_cols=211 Identities=14% Similarity=0.109 Sum_probs=135.3
Q ss_pred CCCEEEEe-cCCeEEEEE--CCeeeE----------EEe-cCC-eEEEEeCC-CcEEEEc-CCC-e-EEEeeccCCcccc
Q 018144 89 NGVIYTAT-RDGWIKRLQ--DGTWVN----------WKF-IDS-HLIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLR 149 (360)
Q Consensus 89 ~G~l~v~~-~~G~I~~~~--~g~~~~----------~~~-~~g-~L~v~~~~-~gl~~~~-~~g-~-~~l~~~~~~~~~~ 149 (360)
.+.+|+++ .++.|..++ +++... +.. ++| .||+++.. ..++.++ .++ . ...... + .
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~---~ 83 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE--G---Q 83 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE--C---S
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc--C---C
Confidence 55677777 677788887 454321 111 244 48888874 5688888 566 4 332222 1 2
Q ss_pred cccc-EEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~-l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.+.. ++++++|+..++... ....+.|..+|.++++..........|++++++|||+.+|+++...
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp SCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT
T ss_pred CCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC
Confidence 3556 999999974443221 0011279999998888766555556789999999999899998876
Q ss_pred CE-EEEEEecCCc-Ccc--eeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCcccccccc
Q 018144 229 FR-CRKYWLKGER-KGK--LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 303 (360)
Q Consensus 229 ~~-i~~~~~~g~~-~~~--~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 303 (360)
+. |..|+++... ... ...+ .....|.+++++++|+ +|++...
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~------------------------------- 196 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLI------------------------------- 196 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETT-------------------------------
T ss_pred CceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCC-------------------------------
Confidence 67 8888876321 111 1111 1223588999999997 8888764
Q ss_pred CCCceEEEEECC-CCcE---EEEEeCCCCCcccceeeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 018144 304 LGGGAHLIHVAE-DGTI---IRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 304 ~~~~~~v~~~~~-~g~~---~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..++. +++. +..+... ..+..+... + ..||+++...+.|.++++
T Consensus 197 ---~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 197 ---GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ---TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ---CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 246777775 4666 6656532 134455554 3 558998888888888775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-09 Score=95.14 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=112.7
Q ss_pred CCCcceEEEcCCCC-EEEEe-cCCeEEEEE---CCeeeE----------------------EE-ecCCeEEEEeCCCc-E
Q 018144 78 VNHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVN----------------------WK-FIDSHLIICDNANG-L 128 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~---~g~~~~----------------------~~-~~~g~L~v~~~~~g-l 128 (360)
...|.+++++++|. ||+++ .++.|..++ +|.... +. .++|++|+++...+ +
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v 164 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV 164 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence 46899999999986 88888 667777666 343211 11 23566898887644 6
Q ss_pred EEEc-C-CC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccE--EEEEcCCCCeEEEE
Q 018144 129 HKVS-E-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYDPSSNITTLV 202 (360)
Q Consensus 129 ~~~~-~-~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~tg~~~~~ 202 (360)
..++ . +| +....... ......|+++++++||+ +|+++.. .+. ++.++..+++++..
T Consensus 165 ~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCceEEe
Confidence 6666 4 56 54432211 11113578899999997 8887643 234 45555545765432
Q ss_pred eC--C-------CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 203 AD--G-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 203 ~~--~-------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.. . ...|.+++++|||++||++....+.|..|+++.. .......+. .....|.+++++++|+ ||++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEET
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEc
Confidence 21 1 1347789999999999999988889999998632 111122221 1223589999999997 788765
Q ss_pred c
Q 018144 272 K 272 (360)
Q Consensus 272 ~ 272 (360)
.
T Consensus 306 ~ 306 (347)
T 3hfq_A 306 N 306 (347)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-08 Score=91.68 Aligned_cols=175 Identities=12% Similarity=0.124 Sum_probs=108.6
Q ss_pred CCcceEEEcCCCC-EEEEecC-CeEEEEE-C---CeeeEE------------E-ecCC-eEEEEeCCCc-EEEEc-CCC-
Q 018144 79 NHPEDASMDKNGV-IYTATRD-GWIKRLQ-D---GTWVNW------------K-FIDS-HLIICDNANG-LHKVS-EDG- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~-G~I~~~~-~---g~~~~~------------~-~~~g-~L~v~~~~~g-l~~~~-~~g- 135 (360)
..|.+++++++|. ||+++.+ +.|..++ + |+.+.+ . .++| .||+++...+ +..++ .++
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc
Confidence 5799999999887 8888854 8887766 3 433221 1 1233 4888876544 66666 344
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeEEEE------eCCCc
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV------ADGFY 207 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~~~~------~~~l~ 207 (360)
........... ..+++++++++|+ +|+++.. .+.|..||..+ +++... .....
T Consensus 118 ~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 118 PVGVVDVVEGL--DGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEEEEEEECCC--TTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred cccccccccCC--CCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecCCCceeeecccccccCCCC
Confidence 22222222221 3488999999995 8886522 45788888765 655422 12234
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecC--CcCcceeeeccCC-----CCCCceeEEcCCCC-EEEEEec
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENL-----PGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g--~~~~~~~~~~~~~-----~g~pd~i~~d~~G~-lwva~~~ 272 (360)
.|+++++++|++.+|++....+.|..|+++. .+......+.... ...|..++++++|+ +|++...
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 7889999999999999987788999999853 2221122221111 11344699999995 6666543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-08 Score=90.89 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=133.8
Q ss_pred CCCcceEEEcCCCC-EEEEecCCeEEEEE---CCeeeEEE-------------ecCCe-EEE--Ee-------------C
Q 018144 78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ---DGTWVNWK-------------FIDSH-LII--CD-------------N 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~~~G~I~~~~---~g~~~~~~-------------~~~g~-L~v--~~-------------~ 124 (360)
...|..++++++|. ||+++.+ .|..++ +|+..... .++|+ ||+ ++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 45799999999987 7877765 676665 56543221 12455 343 32 2
Q ss_pred CCcEEEEc--CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCC-CCeE
Q 018144 125 ANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNIT 199 (360)
Q Consensus 125 ~~gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg~~ 199 (360)
...+..++ .+| ...............++++++++||+ +|++|.. .+.|..||.+ +|+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEV 180 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCCE
Confidence 22344444 355 33211111000124688999999995 8887643 3467777766 6766
Q ss_pred EEEe--C---CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC--CcCcc-eeeecc---CCCC---------CCceeE
Q 018144 200 TLVA--D---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGK-LETFAE---NLPG---------APDNIN 259 (360)
Q Consensus 200 ~~~~--~---~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g--~~~~~-~~~~~~---~~~g---------~pd~i~ 259 (360)
+... . ....|.+++++|||+.+|++....+.|..|+.+. .+... ...+.. ...+ .|.+++
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 4321 1 1456899999999999999987777888887652 11110 111111 1111 367899
Q ss_pred -EcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE---EeCCCCCcccce
Q 018144 260 -LAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLMSFV 334 (360)
Q Consensus 260 -~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~g~~~~~~ 334 (360)
+++||+ ||++....... ....-.++.++++|+.... ....... ...
T Consensus 261 ~~spdG~~l~v~~~~~~~~---------------------------~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~~~ 311 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSG--GHS 311 (365)
T ss_dssp EECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCC--TTC
T ss_pred EECCCCCEEEEECCCCCCC---------------------------CCCeEEEEEECCCCCEEEeeeeeecCCCC--ccc
Confidence 999996 78776541000 0001235555556775542 2221111 011
Q ss_pred eeEEE---ECCEEEEEeCCCCeEEEEeC
Q 018144 335 TSGLQ---VDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 335 t~~~~---~~g~Lylgs~~~~~i~~~~l 359 (360)
-.+.. ++++||+++..++.|.++++
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 12334 46789999988888888764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-08 Score=93.47 Aligned_cols=195 Identities=9% Similarity=0.074 Sum_probs=124.2
Q ss_pred ecCCeEEEEeC-CCcEEEEc-CCC-eEEEeec--cCCccccccccEEEcC----CCcEEEEeCCCCCCCccceecccccC
Q 018144 114 FIDSHLIICDN-ANGLHKVS-EDG-VENFLSY--VNGSKLRFANDVVEAS----DGSLYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 114 ~~~g~L~v~~~-~~gl~~~~-~~g-~~~l~~~--~~~~~~~~~n~l~~d~----dG~l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
.++|+|||+.. ...|++++ .+| .+.+... ........+.+|++++ +|.||++.+. .
T Consensus 40 ~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~---------------~ 104 (347)
T 3das_A 40 LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS---------------A 104 (347)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC---------------S
T ss_pred cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec---------------C
Confidence 35789999997 45688888 456 5444221 1122235688999997 4899997542 1
Q ss_pred CccEEEEEcCCCC--------eEEEEeC-----CCcCcceEEEecCCCEEEEEe-------------CCCCEEEEEEecC
Q 018144 185 PHGQLLKYDPSSN--------ITTLVAD-----GFYFANGVALSRDEDYVVVCE-------------SWKFRCRKYWLKG 238 (360)
Q Consensus 185 ~~g~l~~~d~~tg--------~~~~~~~-----~l~~pngia~~~dg~~l~v~~-------------t~~~~i~~~~~~g 238 (360)
..++|.|+..+.+ +.+.+.. ..++.+.|++++||. ||++. ...++|+|++.+|
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 2457888865431 2233222 345677899999996 99984 2357899999886
Q ss_pred CcC-----cceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE
Q 018144 239 ERK-----GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 313 (360)
Q Consensus 239 ~~~-----~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (360)
... ...+++...+ ..|.++++|++|.||++..+... ...|.++
T Consensus 184 ~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~-------------------------------~deln~i 231 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDT-------------------------------WDELNAI 231 (347)
T ss_dssp SBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSS-------------------------------CEEEEEE
T ss_pred CccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCC-------------------------------CceeeEE
Confidence 411 1234554322 24899999999999999987321 1233333
Q ss_pred CCCCcE-----------------EEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 314 AEDGTI-----------------IRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 314 ~~~g~~-----------------~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.+.. +..+. +. ...++++.+.+|.+|++.+.+.+|.+++++
T Consensus 232 ~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~ 291 (347)
T 3das_A 232 KPGDNYGWPEAEGKGGGSGFHDPVAQWS-TD---EASPSGIAYAEGSVWMAGLRGERLWRIPLK 291 (347)
T ss_dssp CTTCBCCTTTCCSSCCCTTCCCCSEEEC-TT---TCCEEEEEEETTEEEEEESTTCSEEEEEEE
T ss_pred cCCCEecCCcccCCCCCccccCCcEecC-CC---CCCCcceEEEcCceeeccccCCEEEEEEec
Confidence 221110 11111 00 125678899999999999999999999863
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-08 Score=87.93 Aligned_cols=180 Identities=13% Similarity=0.211 Sum_probs=117.0
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCeeeE------------EEe-cCCeEEEEeCC-CcEEEEc--CCC-
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVN------------WKF-IDSHLIICDNA-NGLHKVS--EDG- 135 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~~~------------~~~-~~g~L~v~~~~-~gl~~~~--~~g- 135 (360)
|....+.++++|+ ++.||+.+ .++.|++++ +|++.. ++. .+|++||++.. ++++.++ .++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 4446899999997 46799755 788999999 775432 121 35678888754 5677776 334
Q ss_pred eEEEee-ccC---CccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEc--CCCCeEEEEeC----
Q 018144 136 VENFLS-YVN---GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD--PSSNITTLVAD---- 204 (360)
Q Consensus 136 ~~~l~~-~~~---~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d--~~tg~~~~~~~---- 204 (360)
+..+.. ... ........+|+.|+++ ++|++... ....|+.++ +.+..++....
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhhc
Confidence 333221 111 1222346899999887 79997432 223688887 22223333311
Q ss_pred ---CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCC------CCCCceeEEcCCCCEEEEEec
Q 018144 205 ---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 ---~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~------~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+..+.+++++|..+.||+.+.....|..+|.+|....... +.... ..-|.||++|++|++||++..
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~-L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~ 243 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS-LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP 243 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE-CSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE-cCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence 24467899999998889999998999999998775222221 11111 114889999999999999654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-09 Score=94.81 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=105.7
Q ss_pred cccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCC-------cCcceEEE---ec
Q 018144 149 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF-------YFANGVAL---SR 216 (360)
Q Consensus 149 ~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l-------~~pngia~---~~ 216 (360)
.+|.++..|+ +|.+|+++.. .++|.++|++++..+.+ ..++ ..+.|+.+ ++
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~-----------------~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~ 75 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLY-----------------KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN 75 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETT-----------------TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS
T ss_pred cCCcCccCcCCCCEEEEEecc-----------------CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC
Confidence 5789999975 7899998743 57999999986654443 2222 25789999 78
Q ss_pred CCCEEEE-EeC------------CCCEEEEEEecCCcCcceeeecc------C-------CCCCCceeEEcCCCCEEEEE
Q 018144 217 DEDYVVV-CES------------WKFRCRKYWLKGERKGKLETFAE------N-------LPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 217 dg~~l~v-~~t------------~~~~i~~~~~~g~~~~~~~~~~~------~-------~~g~pd~i~~d~~G~lwva~ 270 (360)
+++ ||+ ++. +...|.+||+++...+......+ . ..+.++++++|++||+||+.
T Consensus 76 ~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 76 SKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp CCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred CCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 865 666 552 35789999988211111111111 1 22358899999999999976
Q ss_pred ecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc-eEEEEECCCCcEEEEEe--CCCCCcccceeeEEEE-CC-EEE
Q 018144 271 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG-AHLIHVAEDGTIIRNLV--DPTGQLMSFVTSGLQV-DN-HLY 345 (360)
Q Consensus 271 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~~g~~~~~~~--~~~g~~~~~~t~~~~~-~g-~Ly 345 (360)
.. . +.|++++++|+....+. .+........++++.+ +| .|+
T Consensus 155 s~----------------------------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li 200 (334)
T 2p9w_A 155 AL----------------------------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLI 200 (334)
T ss_dssp EE----------------------------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEE
T ss_pred CC----------------------------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEE
Confidence 55 2 57999999998555442 2222223446788887 45 555
Q ss_pred EEeCCCCeEEEEeCC
Q 018144 346 VISLTSNFIGKVQLS 360 (360)
Q Consensus 346 lgs~~~~~i~~~~l~ 360 (360)
+... +.+|.++++.
T Consensus 201 v~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 201 AFGG-PRALTAFDVS 214 (334)
T ss_dssp EESS-SSSEEEEECS
T ss_pred EEcC-CCeEEEEcCC
Confidence 5555 9999998863
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-08 Score=88.63 Aligned_cols=184 Identities=10% Similarity=0.104 Sum_probs=114.3
Q ss_pred CCeEEEEeCCC---cEEEEc-CCC-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 116 DSHLIICDNAN---GLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 116 ~g~L~v~~~~~---gl~~~~-~~g-~-~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
+++||+++... .|.++| ++| + ..+. .+.. .+..+++++. ++||+.+.. .+.+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~~--~FgeGit~~g-~~ly~ltw~-----------------~~~v 109 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIE--LGKR--YFGEGISDWK-DKIVGLTWK-----------------NGLG 109 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEE--CCTT--CCEEEEEEET-TEEEEEESS-----------------SSEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEe--cCCc--cceeEEEEeC-CEEEEEEee-----------------CCEE
Confidence 45555555332 355566 555 2 2221 1111 2345677763 589997532 5689
Q ss_pred EEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc-CcceeeeccCCC-CCCceeEEcCCCCEE
Q 018144 190 LKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENLP-GAPDNINLAPDGTFW 267 (360)
Q Consensus 190 ~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~-~~~~~~~~~~~~-g~pd~i~~d~~G~lw 267 (360)
+.||++|.+....... .+.|..+++|++.||+++. .++|+.+|++..+ ....++-....+ ..++.+... +|.+|
T Consensus 110 ~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEEC--CCCceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 9999988876543322 2355566678888999984 6889999986432 222222111111 233445555 78999
Q ss_pred EEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC--------cccceeeEE
Q 018144 268 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ--------LMSFVTSGL 338 (360)
Q Consensus 268 va~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~--------~~~~~t~~~ 338 (360)
++.+. ...|.++|+ +|+++..+..+.-. ......+++
T Consensus 186 an~w~----------------------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA 231 (262)
T 3nol_A 186 ANVWQ----------------------------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIA 231 (262)
T ss_dssp EEETT----------------------------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred EEEcc----------------------------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEE
Confidence 99876 358999997 68999988764211 112446777
Q ss_pred EE--CCEEEEEeCCCCeEEEEeC
Q 018144 339 QV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 339 ~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+ +++||+++..=+.+-+++|
T Consensus 232 ~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 232 WDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp EETTTTEEEEEETTCSEEEEEEE
T ss_pred EcCCCCEEEEECCCCCceEEEEE
Confidence 76 3899999999888887765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-08 Score=90.89 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=105.1
Q ss_pred CCCCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-E----------EEecCCeEEEEeCCCcEEEEc-CCC--eEE
Q 018144 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-N----------WKFIDSHLIICDNANGLHKVS-EDG--VEN 138 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~----------~~~~~g~L~v~~~~~gl~~~~-~~g--~~~ 138 (360)
+.-..+|+++.+ ++.||+++ .++.++.+| +.+.. . +...+++||+++..+.+..+| .+. ...
T Consensus 63 ~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 63 DDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp CTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred CCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 334677889988 56999999 688999999 44322 1 222356799998667788888 554 444
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--CC----------
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GF---------- 206 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~l---------- 206 (360)
+.....+.+...+|.+.+. +|.+|+++.. .+.|.++|++++++..... ++
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~ 203 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFR 203 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence 4333334455678898887 7899997532 4689999999998765432 22
Q ss_pred --cCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 207 --YFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 207 --~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
..||||+++++++.+||+.....+|+.+++.
T Consensus 204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 3679999999999999999988999999874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=89.28 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=99.8
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-E---------EEecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-N---------WKFIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~---------~~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
-.|+++.+ ++.||+.+ .++.++++| +.+.. . +...+++||+++..+.+..+| ++. ...+....
T Consensus 88 FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 88 FGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp CEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE
T ss_pred ceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc
Confidence 34888887 56999999 688999999 44332 2 223467899998767788899 555 34443333
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--C-----------CcCcc
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G-----------FYFAN 210 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~-----------l~~pn 210 (360)
.+.++..+|.+... +|.||+.+.. .+.|.++|++||++....+ + ...+|
T Consensus 167 ~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlN 228 (262)
T 3nol_A 167 HGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLN 228 (262)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEE
T ss_pred CCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceE
Confidence 45566678888775 7999997532 4589999999999865432 1 23679
Q ss_pred eEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 211 GVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 211 gia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
|||++++++.|||+.-.=.+++.+.+
T Consensus 229 GIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 229 GIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEEcCCCCEEEEECCCCCceEEEEE
Confidence 99999999999999876567777664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-07 Score=86.59 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=99.8
Q ss_pred CCEEEEe-cCCeEEEEE-C--CeeeE------------EEe-cCC-eEEEEeCC-CcEEEEc-C--CC-eEEEeeccCCc
Q 018144 90 GVIYTAT-RDGWIKRLQ-D--GTWVN------------WKF-IDS-HLIICDNA-NGLHKVS-E--DG-VENFLSYVNGS 146 (360)
Q Consensus 90 G~l~v~~-~~G~I~~~~-~--g~~~~------------~~~-~~g-~L~v~~~~-~gl~~~~-~--~g-~~~l~~~~~~~ 146 (360)
..+|+++ .++.|..++ + |+.+. +.. ++| .||+++.. ..+..++ . ++ .+.+......
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 4566664 567776666 3 43221 111 234 48888876 4555555 3 55 5544322111
Q ss_pred cccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCC---eEEEEeCCCcCcceEEEecCCCEEE
Q 018144 147 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN---ITTLVADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 147 ~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg---~~~~~~~~l~~pngia~~~dg~~l~ 222 (360)
..+.+++++++|+ +|+++.. .+.|..+|.+++ +..........++++++++||+.+|
T Consensus 84 --~~~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 84 --GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 144 (343)
T ss_dssp --SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred --CCCcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEE
Confidence 2588999999996 7786432 356777776323 2333334556789999999999999
Q ss_pred EEeCCCCEEEEEEecC-CcCccee--eeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 223 VCESWKFRCRKYWLKG-ERKGKLE--TFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g-~~~~~~~--~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+++...+.|..|+++. .+..... .+.......|.+++++++|+ +|++...
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 9986678999999864 2222111 22212223578899999997 7777643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-08 Score=86.59 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=119.1
Q ss_pred eEEEecCCeEEEEeCCC-cEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 018144 110 VNWKFIDSHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 185 (360)
Q Consensus 110 ~~~~~~~g~L~v~~~~~-gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~ 185 (360)
+.+...+++||+++... .|.++| ++| ...+ .+.. .+..+++++. ++||+.+..
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~--~FgeGit~~g-~~Ly~ltw~----------------- 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME---RLGN--IFAEGLASDG-ERLYQLTWT----------------- 114 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE---ECTT--CCEEEEEECS-SCEEEEESS-----------------
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCC--cceeEEEEeC-CEEEEEEcc-----------------
Confidence 34444567777777654 355566 566 3333 2221 2345677764 589997532
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCC-CCCceeEEcCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLP-GAPDNINLAPD 263 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~-g~pd~i~~d~~ 263 (360)
.+.++.||++|.+....... .+.|..+++|++.||+++ +.++|..+|++..+. .+.++-....+ ..++.+... +
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 56899999998877543332 244555557788999998 478999999764322 22222111111 123445555 7
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCC---------CCcccc
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT---------GQLMSF 333 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~---------g~~~~~ 333 (360)
|.||++.+. ...|.++|+ +|+++..+.... ....+.
T Consensus 191 G~lyanvw~----------------------------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 191 GVIYANIWH----------------------------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp TEEEEEETT----------------------------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred CEEEEEECC----------------------------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 899998876 358999998 689988886421 001234
Q ss_pred eeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 334 VTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 334 ~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
..+++.+ +++||+++..=+.+-+++|
T Consensus 237 lNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred eEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 5667776 3889999999898888775
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=88.27 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=99.5
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-E---------EEecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-N---------WKFIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~---------~~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
-.|+++.+ ++.||+.+ .++.++.+| +.+.. . +...+++||+++..+.+..+| ++. ...+....
T Consensus 97 FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 97 FAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp CEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred ceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 44888887 56999999 688999999 55432 1 223467899999767788899 555 44443333
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--------------CCcCc
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFYFA 209 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--------------~l~~p 209 (360)
.+.++..+|.+... +|.||+.+.. .+.|.++|+++|++....+ ....+
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl 237 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL 237 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE
T ss_pred CCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce
Confidence 55566678888776 8899997532 4589999999998865332 11368
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
||||++++++.|||+.-.=.+++.+.+
T Consensus 238 NGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 238 NGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 999999999999999765556766654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-08 Score=85.41 Aligned_cols=139 Identities=19% Similarity=0.098 Sum_probs=101.4
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee----------EEEecCCeEEEEeCCCcEEEEc-CCC--eEEEeec
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV----------NWKFIDSHLIICDNANGLHKVS-EDG--VENFLSY 142 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~----------~~~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~ 142 (360)
...|+++.+ ++.||+.+ .++.++.+| +.+.. .+...+++||+++....|..+| ++. ...+...
T Consensus 65 ~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 65 YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp CCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred cceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 355888887 57899999 788999999 44432 1234467899999777899999 555 4444333
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--------------CCcC
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFYF 208 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--------------~l~~ 208 (360)
..+.++..+|.+... +|+||+.+.. ...|.++|+++|++....+ ....
T Consensus 144 ~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred cCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 455566677888765 7999986532 4589999999998865322 1236
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
+||||++++++.|||+.-.=.+++.+.+
T Consensus 206 lNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp EEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred eEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 7999999999999999876567777765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-09 Score=101.15 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CC------CcCcceEEEecC-
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DG------FYFANGVALSRD- 217 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~------l~~pngia~~~d- 217 (360)
+..|.+|+++++|+|||++.. .++|+++++.+++.+.+. .. ...+.||+++||
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf 88 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF 88 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred CCCceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc
Confidence 356889999999999998642 347999987667665432 22 233459999996
Q ss_pred --CCEEEEEeCC------------CCEEEEEEecCC--cCcceeeeccCCC----CCCceeEEcCCCCEEEEEecCchhH
Q 018144 218 --EDYVVVCESW------------KFRCRKYWLKGE--RKGKLETFAENLP----GAPDNINLAPDGTFWIAIIKLDARR 277 (360)
Q Consensus 218 --g~~l~v~~t~------------~~~i~~~~~~g~--~~~~~~~~~~~~~----g~pd~i~~d~~G~lwva~~~~~~~~ 277 (360)
+..||++.+. ..+|.|++.+.. .....+++.+..+ -.+.+|++++||+|||+.....+..
T Consensus 89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~ 168 (454)
T 1cru_A 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ 168 (454)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCC
Confidence 6689999864 358999987642 2223333332222 1478899999999999976532110
Q ss_pred HHHhhcchhHHHHHHhCCccc--cccccCCCceEEEEECCCCc-----------EEEEEeCCCCCcccceeeEEEE-CCE
Q 018144 278 MKILNSSKLIKHVLAAYPKLF--SQFITLGGGAHLIHVAEDGT-----------IIRNLVDPTGQLMSFVTSGLQV-DNH 343 (360)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~v~~~~~~g~-----------~~~~~~~~~g~~~~~~t~~~~~-~g~ 343 (360)
.+.. ..|. + -.++|... ..-......+.|+|++++|+ ..+.+.. | +..+.++..+ +|+
T Consensus 169 ~~~~-~~~~-~--~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G--~RNp~gla~dp~G~ 240 (454)
T 1cru_A 169 LAYL-FLPN-Q--AQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFTPNGK 240 (454)
T ss_dssp GGGT-TSCC-C--TTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEECTTSC
T ss_pred cccc-cccc-c--cccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--C--CCCcceEEECCCCC
Confidence 0000 0000 0 00000000 00000123589999999997 2344443 3 2356677777 489
Q ss_pred EEEEeCCCC
Q 018144 344 LYVISLTSN 352 (360)
Q Consensus 344 Lylgs~~~~ 352 (360)
||++....+
T Consensus 241 L~~~d~g~~ 249 (454)
T 1cru_A 241 LLQSEQGPN 249 (454)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCCC
Confidence 999987543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-07 Score=87.65 Aligned_cols=237 Identities=11% Similarity=0.056 Sum_probs=148.8
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-EE----------E--ecCCeEEEEeCC-CcEEEEc-CCC-eEEEe
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NW----------K--FIDSHLIICDNA-NGLHKVS-EDG-VENFL 140 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~~----------~--~~~g~L~v~~~~-~gl~~~~-~~g-~~~l~ 140 (360)
...++++.++|.+|++. .+|.|..++ +++.. .+ . ..+..+|++... +.+..++ .++ .....
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 250 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT 250 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe
Confidence 44568888889888877 789999998 44321 11 1 123457777744 4567777 566 32221
Q ss_pred eccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
.. . ..+.+++++++| .+|++...... . ....+.|..+|..+++..........+.+++++++++
T Consensus 251 ~~--~---~~~~~~~~~~~g~~l~~~~~~~~~---------~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 251 DK--I---GLPRGLLLSKDGKELYIAQFSASN---------Q-ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN 315 (433)
T ss_dssp CC--C---SEEEEEEECTTSSEEEEEEEESCT---------T-CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred cC--C---CCceEEEEcCCCCEEEEEECCCCc---------c-ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence 11 1 247889999999 46665422100 0 0135789999998887655443334678999999999
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
.+|++....+.|..|+++..+. ...+. ....+..++++++|+ +|++....... ..
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~--------------------~~ 371 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKV--QKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHP--------------------TE 371 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEE--EEEEE--CSSSEEEEEECTTSSEEEEEECCCCCT--------------------TT
T ss_pred EEEEEecCCCEEEEEECCCCcE--EEEec--CCCCCCeEEEcCCCCEEEEEecCCCcc--------------------cc
Confidence 8999988889999999864321 12221 233578899999996 77776541100 00
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
..+......+.|..+|. +++.+..+... ..+..+... +..|++++...+.|.+++++
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEAG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccccccccceEEEEEECCCCcEEEEecCC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 00001122358888986 67777777642 246666665 35788888778899888764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-07 Score=86.80 Aligned_cols=209 Identities=13% Similarity=0.125 Sum_probs=137.1
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE----------------EE-ecCCeEEEEeCC-CcEEEEc-CCC-
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN----------------WK-FIDSHLIICDNA-NGLHKVS-EDG- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~----------------~~-~~~g~L~v~~~~-~gl~~~~-~~g- 135 (360)
..|.++++++++.+|++. .++.|..++ +++... +. ..++++|++... ..+..++ .++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 457789999988898887 567799998 454322 11 236778877655 4566677 555
Q ss_pred -eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 213 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia 213 (360)
...+. . .+ ..+..++++++|. +|++.. ..+.|..+|..+++..........+.+++
T Consensus 203 ~~~~~~-~-~~---~~~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 260 (433)
T 3bws_A 203 YKATVD-L-TG---KWSKILLYDPIRDLVYCSNW-----------------ISEDISVIDRKTKLEIRKTDKIGLPRGLL 260 (433)
T ss_dssp EEEEEE-C-SS---SSEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTTTEEEEECCCCSEEEEEE
T ss_pred EEEEEc-C-CC---CCeeEEEEcCCCCEEEEEec-----------------CCCcEEEEECCCCcEEEEecCCCCceEEE
Confidence 33332 1 11 3578899999986 666542 25689999998887765555555689999
Q ss_pred EecCCCEEEEEeC-------CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcch
Q 018144 214 LSRDEDYVVVCES-------WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 214 ~~~dg~~l~v~~t-------~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~ 285 (360)
++++|+.++++.. ..+.|..+++...+. ...+ ..++.+.+++++++|+ +|++...
T Consensus 261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~------------- 323 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--IDTI--GPPGNKRHIVSGNTENKIYVSDMC------------- 323 (433)
T ss_dssp ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EEEE--EEEECEEEEEECSSTTEEEEEETT-------------
T ss_pred EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--Eeec--cCCCCcceEEECCCCCEEEEEecC-------------
Confidence 9999998888874 345788999764321 1111 1123577899999995 7777554
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCC
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSN 352 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~ 352 (360)
.+.|..++.+ ++.+..+... ..+..+... +..||+++...+
T Consensus 324 ---------------------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 324 ---------------------CSKIEVYDLKEKKVQKSIPVF-----DKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp ---------------------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEECCCC
T ss_pred ---------------------CCEEEEEECCCCcEEEEecCC-----CCCCeEEEcCCCCEEEEEecCCC
Confidence 2577777764 6666666532 235556555 346888876644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-07 Score=91.01 Aligned_cols=219 Identities=9% Similarity=-0.030 Sum_probs=140.4
Q ss_pred EEcCCCCEEEEe-cCCeEEEEE--CCeee----------EEEe--cCCeEEEEeCCCcEEEEcC---CCeEEEeeccCCc
Q 018144 85 SMDKNGVIYTAT-RDGWIKRLQ--DGTWV----------NWKF--IDSHLIICDNANGLHKVSE---DGVENFLSYVNGS 146 (360)
Q Consensus 85 ~~d~~G~l~v~~-~~G~I~~~~--~g~~~----------~~~~--~~g~L~v~~~~~gl~~~~~---~g~~~l~~~~~~~ 146 (360)
+++++|.+|++. .++.|..+| +++.. .+.. .+..||+++.++.+..+|- ++ +.+.....+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~g- 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKIG- 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEECC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEecC-
Confidence 477888999888 678899898 55432 1111 2446999988777777773 33 222211122
Q ss_pred cccccccEEEcC----CCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC------------CcCc
Q 018144 147 KLRFANDVVEAS----DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFA 209 (360)
Q Consensus 147 ~~~~~n~l~~d~----dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~------------l~~p 209 (360)
..|.++++++ ||+ +|+++. ..+.|..+|..+++....... ...+
T Consensus 222 --~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 222 --IEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp --SEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred --CCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 3578999999 885 788642 135788889888776543221 1245
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHH
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK 288 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r 288 (360)
.++++++++..+|++....+.|..++....+.-....+. ....|.++.++++|+ ++++...
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~---------------- 344 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANN---------------- 344 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGG----------------
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecC----------------
Confidence 689999999999999998899999998643221111221 234688999999998 5666654
Q ss_pred HHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEe-CCCCeEEEEeCC
Q 018144 289 HVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVIS-LTSNFIGKVQLS 360 (360)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs-~~~~~i~~~~l~ 360 (360)
.+.|..+|. +|+++..+.............+..- +|.+|+++ ...+.|.+++++
T Consensus 345 ------------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 345 ------------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ------------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence 246777885 6787777764221100011222222 48899886 467889888753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-07 Score=84.64 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=115.6
Q ss_pred CeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 117 SHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
..||++... +.+..++ .++ ....... . ..++.++++++|+ ||++.. ..+.|..+
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~----~~v~~~~~spdg~~l~~~~~-----------------~~~~v~v~ 101 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTATNNVIATVPA-G----SSPQGVAVSPDGKQVYVTNM-----------------ASSTLSVI 101 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEEC-S----SSEEEEEECTTSSEEEEEET-----------------TTTEEEEE
T ss_pred CEEEEECCCCCeEEEEECCCCeEEEEEEC-C----CCccceEECCCCCEEEEEEC-----------------CCCEEEEE
Confidence 347776643 5566777 666 3222111 1 1578899999996 777643 24689999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
|..+++..........+.++++++|++.+|++....+.|..+++...+. ...+. ....|..++++++|+ +|++..
T Consensus 102 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 102 DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVS--VGRSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE--CCSSEEEEEECTTSSEEEEEET
T ss_pred ECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEe--cCCCcceEEECCCCCEEEEEeC
Confidence 9998887665555567899999999999989988888999999754321 12221 223478899999995 667654
Q ss_pred cCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEe
Q 018144 272 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVIS 348 (360)
Q Consensus 272 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs 348 (360)
. .+.|..+|. .++....+.... .+..+... +..||+++
T Consensus 178 ~----------------------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 178 D----------------------------------SMSISVIDTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp T----------------------------------TTEEEEEETTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEE
T ss_pred C----------------------------------CCEEEEEECCCCeEEEEEecCC-----CccceEECCCCCEEEEEe
Confidence 4 246777775 455555554321 34455554 35677777
Q ss_pred C--CCCeEEEEeC
Q 018144 349 L--TSNFIGKVQL 359 (360)
Q Consensus 349 ~--~~~~i~~~~l 359 (360)
. ....|.++++
T Consensus 219 ~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 219 VDKYFNTVSMIDT 231 (391)
T ss_dssp ECSSCCEEEEEET
T ss_pred cCcCCCcEEEEEC
Confidence 5 5666766654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.2e-09 Score=95.82 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=103.9
Q ss_pred ccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-E-------eCCCcCcceEEEecC-
Q 018144 148 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-V-------ADGFYFANGVALSRD- 217 (360)
Q Consensus 148 ~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~-------~~~l~~pngia~~~d- 217 (360)
+..|.+|+++++|+ +||++. .|+|++++++ ++... + ..+...++||+++||
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~------------------~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf 77 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLR------------------GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDF 77 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEET------------------TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTH
T ss_pred CCCcEEEEEcCCCCEEEEEeC------------------CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCC
Confidence 45689999999999 999853 3789999875 54321 1 123346789999996
Q ss_pred --CCEEEEEeCC-------CCEEEEEEecCC--cCcceeeeccCCC------CCCceeEEcCCCCEEEEEecCchhHHHH
Q 018144 218 --EDYVVVCESW-------KFRCRKYWLKGE--RKGKLETFAENLP------GAPDNINLAPDGTFWIAIIKLDARRMKI 280 (360)
Q Consensus 218 --g~~l~v~~t~-------~~~i~~~~~~g~--~~~~~~~~~~~~~------g~pd~i~~d~~G~lwva~~~~~~~~~~~ 280 (360)
+..+|++.+. ..+|.|++.++. .....+++.+..+ -.+.+|++++||+|||+.....+..
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~--- 154 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP--- 154 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG---
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC---
Confidence 6679999764 458999988643 2233343332222 1377899999999999986532210
Q ss_pred hhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE-------------EEEEeCCCCCcccceeeEEEE--CCEEE
Q 018144 281 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI-------------IRNLVDPTGQLMSFVTSGLQV--DNHLY 345 (360)
Q Consensus 281 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~-------------~~~~~~~~g~~~~~~t~~~~~--~g~Ly 345 (360)
. .+ ......+.|+|++++|++ .+.+.. | +..+..+..+ +|+||
T Consensus 155 ~----------------~q--~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G--~rnp~gl~~d~~~g~l~ 212 (353)
T 2g8s_A 155 T----------------AQ--DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSY--G--IRNPQGMAMNPWSNALW 212 (353)
T ss_dssp G----------------GG--CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEE--C--CSEEEEEEEETTTTEEE
T ss_pred c----------------cC--CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEE--c--CcCccceEEECCCCCEE
Confidence 0 00 001224789999999862 222221 2 2346667776 48999
Q ss_pred EEeCCCC
Q 018144 346 VISLTSN 352 (360)
Q Consensus 346 lgs~~~~ 352 (360)
++....+
T Consensus 213 ~~d~g~~ 219 (353)
T 2g8s_A 213 LNEHGPR 219 (353)
T ss_dssp EEEECSB
T ss_pred EEecCCC
Confidence 9987643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-07 Score=84.77 Aligned_cols=210 Identities=14% Similarity=0.012 Sum_probs=131.9
Q ss_pred CcceEEEcCCC-CEEEEe-cCCeEEEEE--CCeeeE-EE----------------ecCC-eEEEEe------------CC
Q 018144 80 HPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVN-WK----------------FIDS-HLIICD------------NA 125 (360)
Q Consensus 80 ~Pe~i~~d~~G-~l~v~~-~~G~I~~~~--~g~~~~-~~----------------~~~g-~L~v~~------------~~ 125 (360)
.|.+++++++| .+|++. .++.|+.++ +++... +. .++| .||+++ ..
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 59999999988 578877 578899998 554321 11 1133 688885 34
Q ss_pred CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 126 NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 126 ~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
..+..++ .++ ....... + ..+.+++++++|+ ||++ .+.|+.+|..+++....
T Consensus 115 ~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~--------------------~~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGL--------------------GRDLHVMDPEAGTLVED 169 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEE--------------------SSSEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEe--------------------CCeEEEEECCCCcEeee
Confidence 6688888 555 3222111 1 2478899999996 8885 24688999988877554
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCC-----------------------EEEEEEecCCcCcceeeeccCCCCCCceeE
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKF-----------------------RCRKYWLKGERKGKLETFAENLPGAPDNIN 259 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~-----------------------~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~ 259 (360)
......+..+++++|++.+|++....+ .|..++.+..+..... +. .....|.+++
T Consensus 170 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~-~~~~~~~~~~ 247 (337)
T 1pby_B 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-VR-IMDVFYFSTA 247 (337)
T ss_dssp ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-EE-ECSSCEEEEE
T ss_pred eeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee-cC-CCCCceeeEE
Confidence 433232345578899887777665444 3567776543322111 11 1223577899
Q ss_pred EcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeE
Q 018144 260 LAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSG 337 (360)
Q Consensus 260 ~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~ 337 (360)
++++|+ +|++ . +.|..+|. +++.+..+.... .+.++
T Consensus 248 ~s~dg~~l~~~--~-----------------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~ 285 (337)
T 1pby_B 248 VNPAKTRAFGA--Y-----------------------------------NVLESFDLEKNASIKRVPLPH-----SYYSV 285 (337)
T ss_dssp ECTTSSEEEEE--E-----------------------------------SEEEEEETTTTEEEEEEECSS-----CCCEE
T ss_pred ECCCCCEEEEe--C-----------------------------------CeEEEEECCCCcCcceecCCC-----ceeeE
Confidence 999996 6666 2 26788886 466666665432 24455
Q ss_pred EEE--CCEEEEEeCCCCeEEEEeC
Q 018144 338 LQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 338 ~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
... +.+||+++. .+.|.++++
T Consensus 286 ~~s~dg~~l~~~~~-~~~i~v~d~ 308 (337)
T 1pby_B 286 NVSTDGSTVWLGGA-LGDLAAYDA 308 (337)
T ss_dssp EECTTSCEEEEESB-SSEEEEEET
T ss_pred EECCCCCEEEEEcC-CCcEEEEEC
Confidence 554 356888744 677877765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-07 Score=84.81 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=107.1
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE---CCee------------------------eEEE-ecCC-eEEEEeCCC-c
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTW------------------------VNWK-FIDS-HLIICDNAN-G 127 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~---~g~~------------------------~~~~-~~~g-~L~v~~~~~-g 127 (360)
..|..+++ ....||+++ .+|.|..++ ++.. ..+. .++| .||+++... .
T Consensus 100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 178 (361)
T 3scy_A 100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ 178 (361)
T ss_dssp SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence 57888988 344688887 577787777 3321 1122 2345 488888653 4
Q ss_pred EEEEc-C--CC------eEEE--eeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 128 LHKVS-E--DG------VENF--LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 128 l~~~~-~--~g------~~~l--~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
+..++ . ++ +... ...........|+++++++||+ +|+++.. .+.|..||.+
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~ 241 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFRYA 241 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEEEE
T ss_pred EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEec
Confidence 44444 2 22 1111 0000011123578899999996 8887532 4567777776
Q ss_pred CCeEEEEe------CCCcCcceEEEecCCCEEEEEeCC-CCEEEEEEecC--CcCcceeeeccCCCCCCceeEEcCCCC-
Q 018144 196 SNITTLVA------DGFYFANGVALSRDEDYVVVCESW-KFRCRKYWLKG--ERKGKLETFAENLPGAPDNINLAPDGT- 265 (360)
Q Consensus 196 tg~~~~~~------~~l~~pngia~~~dg~~l~v~~t~-~~~i~~~~~~g--~~~~~~~~~~~~~~g~pd~i~~d~~G~- 265 (360)
+++++.+. .....|.+++++|||++||++... .+.|..|+++. .+......+. . ...|.+++++++|+
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 242 DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKY 319 (361)
T ss_dssp TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCE
T ss_pred CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCE
Confidence 67664432 123457799999999999999987 78898888852 2221222222 1 34689999999997
Q ss_pred EEEEEec
Q 018144 266 FWIAIIK 272 (360)
Q Consensus 266 lwva~~~ 272 (360)
||++...
T Consensus 320 l~~~~~~ 326 (361)
T 3scy_A 320 LLVACRD 326 (361)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7777643
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-07 Score=84.60 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=104.1
Q ss_pred cccccEEEc-C-------CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC--------------
Q 018144 149 RFANDVVEA-S-------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-------------- 206 (360)
Q Consensus 149 ~~~n~l~~d-~-------dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l-------------- 206 (360)
.+.++|++| . ++.+||||+. .++|++||..+++...+....
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~ 214 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGK 214 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTE
T ss_pred CccceEEEecccCCCCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCE
Confidence 578999999 2 4679999975 357888888777665544210
Q ss_pred -----cCcceEEEecC----CCEEEEEeCCCCEEEEEEec---C-CcCcceeeeccCCCCCCc--eeEEc-CCCCEEEEE
Q 018144 207 -----YFANGVALSRD----EDYVVVCESWKFRCRKYWLK---G-ERKGKLETFAENLPGAPD--NINLA-PDGTFWIAI 270 (360)
Q Consensus 207 -----~~pngia~~~d----g~~l~v~~t~~~~i~~~~~~---g-~~~~~~~~~~~~~~g~pd--~i~~d-~~G~lwva~ 270 (360)
....||+++++ ++.||+.-..+.+++++..+ . .....++.+.+..+ ..+ +++.| .+|+||++.
T Consensus 215 ~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~~~~D~~~G~ly~~~ 293 (381)
T 3q6k_A 215 EYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGK-YNDAIALAYDPKTKVIFFAE 293 (381)
T ss_dssp EEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCT-TCCEEEEEECTTTCEEEEEE
T ss_pred EeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCC-CCCcceEEEeCCCCeEEEEe
Confidence 14568999998 88999999988899999842 2 22233444443321 234 45676 899999999
Q ss_pred ecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-c-----EEEEEeCCCCCcccceeeEEEE-CCE
Q 018144 271 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-T-----IIRNLVDPTGQLMSFVTSGLQV-DNH 343 (360)
Q Consensus 271 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~-----~~~~~~~~~g~~~~~~t~~~~~-~g~ 343 (360)
.. ...|.+.++++ . ....++++ . +.+++++..+ +|+
T Consensus 294 ~~----------------------------------~~aI~~w~~~~~~~~~~n~~~l~~d~-~--l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 294 AN----------------------------------TKQVSCWNTQKMPLRMKNTDVVYTSS-R--FVFGTDISVDSKGG 336 (381)
T ss_dssp SS----------------------------------SSEEEEEETTSCSBCGGGEEEEEECT-T--CCSEEEEEECTTSC
T ss_pred cc----------------------------------CCeEEEEeCCCCccccCceEEEEECC-C--ccccCeEEECCCCe
Confidence 87 47899999987 2 24455665 3 5678888886 699
Q ss_pred EEEEeCC
Q 018144 344 LYVISLT 350 (360)
Q Consensus 344 Lylgs~~ 350 (360)
||+.+..
T Consensus 337 Lwv~sn~ 343 (381)
T 3q6k_A 337 LWFMSNG 343 (381)
T ss_dssp EEEEECS
T ss_pred EEEEECc
Confidence 9998754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-07 Score=79.68 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=107.5
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--CCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~l~~pngia~~~dg~~l~v~~t 226 (360)
.+..+|.++. |+||++... ...+.|.++|+++|++..... .-.+..|+++ +++.||+...
T Consensus 21 ~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred cccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEe
Confidence 4677999886 899998643 113479999999998866443 2334455555 4567999999
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 306 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 306 (360)
..+.+++||.+.- .....+. .++.+-+++.|. +.||++...
T Consensus 83 ~~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~dg-~~L~vSdgs---------------------------------- 123 (243)
T 3mbr_X 83 RNHEGFVYDLATL--TPRARFR--YPGEGWALTSDD-SHLYMSDGT---------------------------------- 123 (243)
T ss_dssp SSSEEEEEETTTT--EEEEEEE--CSSCCCEEEECS-SCEEEECSS----------------------------------
T ss_pred eCCEEEEEECCcC--cEEEEEe--CCCCceEEeeCC-CEEEEECCC----------------------------------
Confidence 8999999997532 2222232 223455666553 479999743
Q ss_pred ceEEEEECCC-CcEEEEEeCC-CCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 307 GAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 307 ~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
+.|..+|++ .+++..+... +|..+.....+...+|+||+.....|.|.+++.
T Consensus 124 -~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 124 -AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP 177 (243)
T ss_dssp -SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred -CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence 589999985 5777777542 444455666667779999999999999999975
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-07 Score=87.29 Aligned_cols=155 Identities=16% Similarity=0.251 Sum_probs=94.7
Q ss_pred eEecCCCCCCcceEEEcCCCC--EEEEecCCeEEEEE-CCee--eE----------------------EEec-----CCe
Q 018144 71 IKVGEGSVNHPEDASMDKNGV--IYTATRDGWIKRLQ-DGTW--VN----------------------WKFI-----DSH 118 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~--l~v~~~~G~I~~~~-~g~~--~~----------------------~~~~-----~g~ 118 (360)
+.+..+ |..|.+|++.++|. ||++...|+|++++ +|.. .. ++.. ++.
T Consensus 7 ~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~ 85 (463)
T 2wg3_C 7 QEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK 85 (463)
T ss_dssp EEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE
T ss_pred EEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE
Confidence 445544 79999999999985 99999999999997 5431 00 1111 246
Q ss_pred EEEEeCC-------------CcEEEEc-CC--------C-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCcc
Q 018144 119 LIICDNA-------------NGLHKVS-ED--------G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 175 (360)
Q Consensus 119 L~v~~~~-------------~gl~~~~-~~--------g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~ 175 (360)
|||+... ..|.++. .. . .+++.+............|++++||.|||+..........
T Consensus 86 lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~ 165 (463)
T 2wg3_C 86 LYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDD 165 (463)
T ss_dssp EEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHH
T ss_pred EEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCc
Confidence 8886431 2455555 21 1 2333322111223456789999999999996542110000
Q ss_pred ceecccccCCccEEEEEcCCCC--------------------eEEEEeCCCcCcceEEEecC-----CC-EEEEEeC
Q 018144 176 YCLDILEGKPHGQLLKYDPSSN--------------------ITTLVADGFYFANGVALSRD-----ED-YVVVCES 226 (360)
Q Consensus 176 ~~~~~~~~~~~g~l~~~d~~tg--------------------~~~~~~~~l~~pngia~~~d-----g~-~l~v~~t 226 (360)
....--.....|.|+|+|+++. ..+++..++..|.|++++++ |+ .+|.+|.
T Consensus 166 ~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 166 MEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp HHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred cccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence 0000001233589999999852 23567788999999999997 33 5677775
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-06 Score=77.37 Aligned_cols=144 Identities=8% Similarity=0.056 Sum_probs=81.3
Q ss_pred eEEEEeCCCcEEEEc-C-CC-eEEEeeccCCccccccccEEEcCCCc-EEE--EeCCCCCCCccceecccccCCccE--E
Q 018144 118 HLIICDNANGLHKVS-E-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYF--TVSSSKYLPHEYCLDILEGKPHGQ--L 189 (360)
Q Consensus 118 ~L~v~~~~~gl~~~~-~-~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~v--td~~~~~~~~~~~~~~~~~~~~g~--l 189 (360)
.||+++.. .+..++ . +| ...+.....+ ..+.++++++||+ +|+ ++.. ++ ..+....+. ..|. +
T Consensus 53 ~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~-~~--~~~~~~~~~--~~g~v~v 123 (365)
T 1jof_A 53 NIYGAAMK-KWSSFAVKSPTEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQP-PY--AVYANPFYK--FAGYGNV 123 (365)
T ss_dssp EEEEEEBT-EEEEEEEEETTEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSST-TC--CEEEEEESS--SCCEEEE
T ss_pred EEEEEccc-eEEEEEECCCCCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCC-cc--eeccceeec--CCceEEE
Confidence 48888766 677777 4 67 5433221111 1367789999997 343 3210 00 000000000 1233 4
Q ss_pred EEEcCCCCeEEEEe-----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec-CCcCcceeeeccCC-CCCCceeEEcC
Q 018144 190 LKYDPSSNITTLVA-----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAENL-PGAPDNINLAP 262 (360)
Q Consensus 190 ~~~d~~tg~~~~~~-----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~~~-~g~pd~i~~d~ 262 (360)
+.++.+ |+..... .....+++++++|||+.+|+++.+.++|..|+++ ..+......+.... ...|.++++++
T Consensus 124 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp 202 (365)
T 1jof_A 124 FSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP 202 (365)
T ss_dssp EEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred EccCCC-CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence 445433 5543221 1346789999999999999999878899999986 32222111121011 23588999999
Q ss_pred CCC-EEEEEe
Q 018144 263 DGT-FWIAII 271 (360)
Q Consensus 263 ~G~-lwva~~ 271 (360)
+|+ +|++..
T Consensus 203 dg~~l~v~~~ 212 (365)
T 1jof_A 203 TGNYLYALME 212 (365)
T ss_dssp TSSEEEEEET
T ss_pred CCCEEEEEEC
Confidence 995 777764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-06 Score=73.77 Aligned_cols=185 Identities=10% Similarity=0.106 Sum_probs=118.7
Q ss_pred CCeEEE-EeCCCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLII-CDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v-~~~~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+++||+ .+....|++++.+| .+.+. ..+ ...+.+|+++++|.+|+++.. .++++.+
T Consensus 38 ~~~L~aV~d~~~~I~~ld~~g~v~~~i~--l~g--~~D~EGIa~~~~g~~~vs~E~-----------------~~~l~~~ 96 (255)
T 3qqz_A 38 SNTLFSTINKPAAIVEMTTNGDLIRTIP--LDF--VKDLETIEYIGDNQFVISDER-----------------DYAIYVI 96 (255)
T ss_dssp TTEEEEEEETTEEEEEEETTCCEEEEEE--CSS--CSSEEEEEECSTTEEEEEETT-----------------TTEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCEEEEEe--cCC--CCChHHeEEeCCCEEEEEECC-----------------CCcEEEE
Confidence 578996 44445688999557 33332 122 245789999999999998643 3466665
Q ss_pred cCCC-CeEE---EEeCCC-cCc-----ceEEEecCCCEEEEEeCCCC-EEEEEEecCC-cCcceeeecc-----C-CCCC
Q 018144 193 DPSS-NITT---LVADGF-YFA-----NGVALSRDEDYVVVCESWKF-RCRKYWLKGE-RKGKLETFAE-----N-LPGA 254 (360)
Q Consensus 193 d~~t-g~~~---~~~~~l-~~p-----ngia~~~dg~~l~v~~t~~~-~i~~~~~~g~-~~~~~~~~~~-----~-~~g~ 254 (360)
+... ++.. .....+ ..+ -|++++++++.||++.-... +|+.++ |- ......+..+ . ...-
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCC
Confidence 4322 3211 121111 123 69999999988888865544 787776 21 0112222211 1 1123
Q ss_pred CceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC----
Q 018144 255 PDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ---- 329 (360)
Q Consensus 255 pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~---- 329 (360)
+.++++|+ .|++||-... ...|+.+|.+|+++..+.-..|.
T Consensus 175 ~S~l~~dp~tg~lliLS~~----------------------------------s~~L~~~d~~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHE----------------------------------SRALQEVTLVGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp CCEEEEETTTTEEEEEETT----------------------------------TTEEEEECTTCCEEEEEECSTTGGGCS
T ss_pred ceeEEEcCCCCeEEEEECC----------------------------------CCeEEEEcCCCCEEEEEEcCCccCCcc
Confidence 78999986 6679987765 35899999999988888766542
Q ss_pred -cccceeeEEEEC-CEEEEEeCCCCeEEEEe
Q 018144 330 -LMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 330 -~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~ 358 (360)
.+..+.+++.+. |+|||.+= .|.+.++.
T Consensus 221 ~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~ 250 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYIVSE-PNRFYRFT 250 (255)
T ss_dssp SCCCSEEEEEECTTCCEEEEET-TTEEEEEE
T ss_pred cccCCCCeeEECCCCCEEEEcC-CceEEEEE
Confidence 245778999885 99999964 57888875
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=98.83 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=59.2
Q ss_pred CccccccccEEEcCCCcEEE-EeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEE
Q 018144 145 GSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYV 221 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~v-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l 221 (360)
+..++.|++|++|++|+||| ||.+.. ... .++....+.|+++++.+|+++.+..+ ...|||++++||++.|
T Consensus 472 ~~~fnsPDnL~fd~~G~LWf~TD~~~~--~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktL 545 (592)
T 4a9v_A 472 QNMFNSPDGLGFDKAGRLWILTDGDSS--NAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL 545 (592)
T ss_dssp TTCCCCEEEEEECTTCCEEEEECCCCC--CSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred cCccCCCCceEECCCCCEEEEeCCCcC--ccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEE
Confidence 34688999999999999999 887631 111 12233456899999999999887753 4679999999999999
Q ss_pred EEEeCC
Q 018144 222 VVCESW 227 (360)
Q Consensus 222 ~v~~t~ 227 (360)
||+-..
T Consensus 546 fV~vQH 551 (592)
T 4a9v_A 546 FVGIQH 551 (592)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 998653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-07 Score=84.44 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=108.5
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC--CCeEEEEe-CC------CcCcceEEEec--C
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVA-DG------FYFANGVALSR--D 217 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tg~~~~~~-~~------l~~pngia~~~--d 217 (360)
..+.||+++++|.+|++.....-+...+ .-...|+|+++|++ +++.+.+. ++ ...|.||.+.+ |
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~-----~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC----------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred CCcceeEEcCCCeEEEEeccccCCCccc-----CCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 3588999999999999863211111111 11246899999987 34444432 22 24799999877 3
Q ss_pred CC-EEEEEeCC--CCE--EEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 018144 218 ED-YVVVCESW--KFR--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292 (360)
Q Consensus 218 g~-~l~v~~t~--~~~--i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~ 292 (360)
+. .|||++.. +.+ |++++.++........+....-..|+++++|++|++|+++..-- ..|..+.. .
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~f--------td~~~~~~-e 195 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYF--------IDPYLKSW-E 195 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSC--------SSHHHHHH-H
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEe--------CCcccccc-h
Confidence 43 69999876 334 55666544322222233222223689999999999999875310 11111110 0
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-C-CEEEEEeCCCCeEEEEeCC
Q 018144 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~~~~i~~~~l~ 360 (360)
.+ ...+.+.|++++++ ++..... + +..+.++... + ..||+++...++|.+++++
T Consensus 196 ~~--------~~~~~g~vyr~d~~-~~~~~~~---~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 196 MH--------LGLAWSFVTYYSPN-DVRVVAE---G--FDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp HH--------TTCCCEEEEEECTT-CCEEEEE---E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred hh--------ccCCccEEEEEECC-eEEEeec---C--CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 00 02235899999984 4332222 2 3445666665 3 5899999999999999863
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-06 Score=79.02 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=120.2
Q ss_pred CCCCEEEEecCCeEEEEE--CCeeeE-E----------EecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcc--ccc
Q 018144 88 KNGVIYTATRDGWIKRLQ--DGTWVN-W----------KFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSK--LRF 150 (360)
Q Consensus 88 ~~G~l~v~~~~G~I~~~~--~g~~~~-~----------~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~--~~~ 150 (360)
.+|.||+++.+|.|+.++ +|+..- . ...++.+|++....+++.++ .+| ....... .... ...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~ 180 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRG 180 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCCceeecC
Confidence 378999999999999999 675421 0 12367899988777899999 788 4332221 1111 111
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-------------ceEEEecC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-------------NGVALSRD 217 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-------------ngia~~~d 217 (360)
....+++ +|.+|+. ...+.|+.+|+.+|+....... ..| ....+ .+
T Consensus 181 ~~~~~~~-~~~v~~g------------------~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~-~~ 239 (376)
T 3q7m_A 181 ESAPTTA-FGAAVVG------------------GDNGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV-VN 239 (376)
T ss_dssp CCCCEEE-TTEEEEC------------------CTTTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE-ET
T ss_pred CCCcEEE-CCEEEEE------------------cCCCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE-EC
Confidence 1223333 6789983 3457899999988877543211 111 11122 23
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
..+|++.. .+.|+.++.+..+. .+..... ....+..+ ++++|+++..
T Consensus 240 -~~v~~~~~-~g~l~~~d~~tG~~----~w~~~~~-~~~~~~~~-~~~l~~~~~~------------------------- 286 (376)
T 3q7m_A 240 -GVVFALAY-NGNLTALDLRSGQI----MWKRELG-SVNDFIVD-GNRIYLVDQN------------------------- 286 (376)
T ss_dssp -TEEEEECT-TSCEEEEETTTCCE----EEEECCC-CEEEEEEE-TTEEEEEETT-------------------------
T ss_pred -CEEEEEec-CcEEEEEECCCCcE----EeeccCC-CCCCceEE-CCEEEEEcCC-------------------------
Confidence 45887764 46799999753221 1211121 23345554 6789999865
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEe
Q 018144 298 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~ 358 (360)
+.|+.+|+ +|+.+.......+ ...+.....+++||+++.. ..|..++
T Consensus 287 ----------g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~l~v~~~~-g~l~~~d 334 (376)
T 3q7m_A 287 ----------DRVMALTIDGGVTLWTQSDLLH---RLLTSPVLYNGNLVVGDSE-GYLHWIN 334 (376)
T ss_dssp ----------CCEEEEETTTCCEEEEECTTTT---SCCCCCEEETTEEEEECTT-SEEEEEE
T ss_pred ----------CeEEEEECCCCcEEEeecccCC---CcccCCEEECCEEEEEeCC-CeEEEEE
Confidence 57899996 6888766653222 1234445568899998864 3455554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-06 Score=77.49 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=54.6
Q ss_pred CcceEEEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcch
Q 018144 208 FANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 208 ~pngia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~ 285 (360)
.+.++++++ |++.+|++ .+.|.+|+++..+. ...+. ....|.+++++++|+ ||++...
T Consensus 256 ~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~------------- 315 (349)
T 1jmx_B 256 LYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL--IKAAN--LDHTYYCVAFDKKGDKLYLGGTF------------- 315 (349)
T ss_dssp CEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE--EEEEE--CSSCCCEEEECSSSSCEEEESBS-------------
T ss_pred cceeeEecCCCCCEEEEE---cCeEEEEECccCeE--EEEEc--CCCCccceEECCCCCEEEEecCC-------------
Confidence 567888889 99999988 46899999864321 11221 233578999999984 7775322
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCC
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG 328 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g 328 (360)
+.|..+|. .++.+..+..+.|
T Consensus 316 ----------------------~~v~v~d~~~~~~~~~~~~~~~ 337 (349)
T 1jmx_B 316 ----------------------NDLAVFNPDTLEKVKNIKLPGG 337 (349)
T ss_dssp ----------------------SEEEEEETTTTEEEEEEECSSS
T ss_pred ----------------------CeEEEEeccccceeeeeecCCC
Confidence 57888886 5777888776633
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-06 Score=84.59 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=135.9
Q ss_pred CcceEEEcCCC-CEEEEecCCeEEEEE-C---Cee----------eEEEe------cCCeEEEEeC-CCcEEEEc-CCC-
Q 018144 80 HPEDASMDKNG-VIYTATRDGWIKRLQ-D---GTW----------VNWKF------IDSHLIICDN-ANGLHKVS-EDG- 135 (360)
Q Consensus 80 ~Pe~i~~d~~G-~l~v~~~~G~I~~~~-~---g~~----------~~~~~------~~g~L~v~~~-~~gl~~~~-~~g- 135 (360)
.|.+++++++| .||+++.++.|..++ + ++. ..+.. .+..||+++. ...+..+| .++
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 48899999987 578888889999988 3 221 12222 2446888885 45677777 566
Q ss_pred -eEEEeec---cCC---ccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeCC
Q 018144 136 -VENFLSY---VNG---SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADG 205 (360)
Q Consensus 136 -~~~l~~~---~~~---~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~~ 205 (360)
+..+... ..+ .+-..+..++++++|. +|++. ...+.|..+|..+++... ....
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-----------------~~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-----------------KETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEEECTTSSSCEEEEEEC
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-----------------CCCCeEEEEEecCCCcceeEEecc
Confidence 4444321 111 0112466788888774 55543 235789999886543211 1123
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCC-ceeE-EcCC-CCEEEEEecCchhHHHHh
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~p-d~i~-~d~~-G~lwva~~~~~~~~~~~~ 281 (360)
..+|.+++++|||+++|++....+.|..+|.+..+.. ..+.. ..| .| .+.. .+++ |.+|++....
T Consensus 323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~--~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~-------- 391 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS--ALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLG-------- 391 (543)
T ss_dssp CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSB-CCTTCEEEEETTTEEEEEEEBSS--------
T ss_pred CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE--EeeccCCCC-CCCCCcccCCCCCccEEEeccCC--------
Confidence 4579999999999999999887889999998643221 11111 111 12 2333 3665 7899876421
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCC--------CcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeC-C
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISL-T 350 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~-~ 350 (360)
.+.|..++.+ +++++.+....+. +..+..+ +.+||+++- +
T Consensus 392 -------------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~----~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 392 -------------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGGG----SLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp -------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCCEEEECCTTC
T ss_pred -------------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCCC----ceEEEcCCCCCcEEEecCCC
Confidence 1345555532 6888888764432 2233443 478999873 2
Q ss_pred -----CCeEEEEeCC
Q 018144 351 -----SNFIGKVQLS 360 (360)
Q Consensus 351 -----~~~i~~~~l~ 360 (360)
++.|.+++++
T Consensus 443 ~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 443 PDARISQSVAVFDLK 457 (543)
T ss_dssp SSHHHHTCEEEEETT
T ss_pred CCcccCceEEEEECC
Confidence 4488888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-06 Score=77.79 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=70.9
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-------CcCcceEEEecCCCEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYV 221 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-------l~~pngia~~~dg~~l 221 (360)
.+.+++++++|+ +|+++. ..+.|+.+|.++++....... ...++++++++||+.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~-----------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 106 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNN-----------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106 (349)
T ss_dssp SSCEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred CCceeEECCCCCEEEEEeC-----------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence 477899999996 888753 246899999988876543321 2338999999999999
Q ss_pred EEEeCC-----------CCEEEEEEecCCcCc-ceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 222 VVCESW-----------KFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 222 ~v~~t~-----------~~~i~~~~~~g~~~~-~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
|++... .+.|..++++..+.. ....+. .+..+.+++++++|++|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~l~~~ 164 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVA 164 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEE
T ss_pred EEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCcEEEc
Confidence 998843 468999998643222 122221 2334677889999998885
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-06 Score=80.84 Aligned_cols=224 Identities=11% Similarity=0.005 Sum_probs=120.3
Q ss_pred CCEEEEecC-----CeEEEEE--CCeeeE---------EEe--cCCeEEEEeC----------CCcEEEEc-CCC--eEE
Q 018144 90 GVIYTATRD-----GWIKRLQ--DGTWVN---------WKF--IDSHLIICDN----------ANGLHKVS-EDG--VEN 138 (360)
Q Consensus 90 G~l~v~~~~-----G~I~~~~--~g~~~~---------~~~--~~g~L~v~~~----------~~gl~~~~-~~g--~~~ 138 (360)
..+|+.+.. +.|..|| ++++.. +.. .+.+|||++. .+.+..|| .++ ...
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~ 164 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD 164 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence 368988842 6899998 554321 221 2456999984 23578888 565 333
Q ss_pred EeeccCCc--cccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC----CcCcce
Q 018144 139 FLSYVNGS--KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFANG 211 (360)
Q Consensus 139 l~~~~~~~--~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----l~~png 211 (360)
+....... ....|.++++++|| ++|+++.. ..+.|..+|..++++...... ...|.|
T Consensus 165 I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g 228 (426)
T 3c75_H 165 IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS 228 (426)
T ss_dssp EEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceeeccCC
Confidence 32110000 01468999999999 69998632 124566666655544321110 011222
Q ss_pred ----EEE-------------------------------------ecCCCEEEEEeCCCCEEEEEEecCCcCc---ceeee
Q 018144 212 ----VAL-------------------------------------SRDEDYVVVCESWKFRCRKYWLKGERKG---KLETF 247 (360)
Q Consensus 212 ----ia~-------------------------------------~~dg~~l~v~~t~~~~i~~~~~~g~~~~---~~~~~ 247 (360)
+++ +++++.+|+... .++|+.+|..+.... ..+..
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEESS
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeeec
Confidence 333 444444444433 345666665432211 01100
Q ss_pred ccC---CCCCCce---eEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE
Q 018144 248 AEN---LPGAPDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI 319 (360)
Q Consensus 248 ~~~---~~g~pd~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~ 319 (360)
... ..-.|.+ ++++++| ++||++...... -+ -...+.|..||. .+++
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g----th---------------------k~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW----KH---------------------KAASRFVVVLNAETGER 362 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT----CT---------------------TSCEEEEEEEETTTCCE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccc----cc---------------------cCCCCEEEEEECCCCeE
Confidence 000 0002333 7888876 589987531000 00 001357999996 5788
Q ss_pred EEEEeCCCCCcccceeeEEEE--CC-EEEEEeCCCCeEEEEeCC
Q 018144 320 IRNLVDPTGQLMSFVTSGLQV--DN-HLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 320 ~~~~~~~~g~~~~~~t~~~~~--~g-~Lylgs~~~~~i~~~~l~ 360 (360)
+..+..+. .+.++... +. .||+++..++.|.+++++
T Consensus 363 v~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 363 INKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 88876432 24445554 45 799988899999999863
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-06 Score=79.86 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred CCCcceEEEcCCCCEEEEe-cC------CeEEEEE--CCeee-EEE--------------ec-CCeEEEEeC--------
Q 018144 78 VNHPEDASMDKNGVIYTAT-RD------GWIKRLQ--DGTWV-NWK--------------FI-DSHLIICDN-------- 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~------G~I~~~~--~g~~~-~~~--------------~~-~g~L~v~~~-------- 124 (360)
...|..+...++| ||+++ .+ |+|..+| ++++. .|. .. .+.++++++
T Consensus 137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT
T ss_pred CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc
Confidence 3579999999999 99876 33 6899998 44432 111 22 234666543
Q ss_pred -----------CCcEEEEc-CCC--eEEEeeccCCccccccccEEE--cCCC-cEEEEeC-CCCCCCccceecccccCCc
Q 018144 125 -----------ANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVE--ASDG-SLYFTVS-SSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 125 -----------~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~--d~dG-~l~vtd~-~~~~~~~~~~~~~~~~~~~ 186 (360)
.+.|..++ .++ ...+..... -..|.+|.+ +++| .+|++.. +.+. -.
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~---g~~P~~i~f~~~Pdg~~aYV~~e~~~~~-------------Ls 279 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE---NRMALELRPLHDPTKLMGFINMVVSLKD-------------LS 279 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT---EEEEEEEEECSSTTCCEEEEEEEEETTT-------------CC
T ss_pred ccchhhhhhccCCEEEEEECCCCcEeeEEecCCC---CCccceeEeeECCCCCEEEEEEeeeccC-------------CC
Confidence 35677777 555 333322111 134667766 8888 5888753 0000 12
Q ss_pred cEEEEEcCCCCeEEEEe-----C----C------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcce
Q 018144 187 GQLLKYDPSSNITTLVA-----D----G------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKL 244 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~-----~----~------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~ 244 (360)
+.|+++..+.|+++... . . ...|.+|.+++||++|||++.+.+.|..|+++.. +....
T Consensus 280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT 359 (462)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 34443332224332211 1 0 2458899999999999999999999999998532 11111
Q ss_pred eee-cc------------CCCCCCceeEEcCCCC-EEEEEe
Q 018144 245 ETF-AE------------NLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 245 ~~~-~~------------~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
..+ .. ...+.|.++.+++||+ +||++.
T Consensus 360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs 400 (462)
T 2ece_A 360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS 400 (462)
T ss_dssp EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence 111 11 1234699999999995 888873
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.2e-06 Score=75.82 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=120.2
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE----------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccC--Cc
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN----------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVN--GS 146 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~----------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~--~~ 146 (360)
+|.+|+++.+|.|+.++ +|+..- ....++.+|++....+++.++ .+| ......... +.
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 67999999999999999 675321 012367899987667799999 678 433221110 00
Q ss_pred ----cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEE
Q 018144 147 ----KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 147 ----~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~ 222 (360)
.+.......+..+|.+|++. ..+.|+.+|+.+|+...... .....+++.+ ++.+|
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~------------------~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~--~~~l~ 281 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALA------------------YNGNLTALDLRSGQIMWKRE-LGSVNDFIVD--GNRIY 281 (376)
T ss_dssp -------CCCCCCEEETTEEEEEC------------------TTSCEEEEETTTCCEEEEEC-CCCEEEEEEE--TTEEE
T ss_pred cccccccccCCCcEEECCEEEEEe------------------cCcEEEEEECCCCcEEeecc-CCCCCCceEE--CCEEE
Confidence 00001111122368899953 34689999998888754332 3334455544 44688
Q ss_pred EEeCCCCEEEEEEecCCcCcceeeeccC-CC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 223 VCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
++.. .+.|+.++.+..+. .+... .. .......++ +|.+|+++..
T Consensus 282 ~~~~-~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~-~~~l~v~~~~---------------------------- 327 (376)
T 3q7m_A 282 LVDQ-NDRVMALTIDGGVT----LWTQSDLLHRLLTSPVLY-NGNLVVGDSE---------------------------- 327 (376)
T ss_dssp EEET-TCCEEEEETTTCCE----EEEECTTTTSCCCCCEEE-TTEEEEECTT----------------------------
T ss_pred EEcC-CCeEEEEECCCCcE----EEeecccCCCcccCCEEE-CCEEEEEeCC----------------------------
Confidence 8876 45799999754321 11111 11 112223333 5789998865
Q ss_pred cccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCC
Q 018144 301 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
+.|..+|+ +|+++..+....+. ..+.....+++||+++..+.
T Consensus 328 -------g~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~~G~ 370 (376)
T 3q7m_A 328 -------GYLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGKLLIQAKDGT 370 (376)
T ss_dssp -------SEEEEEETTTCCEEEEEECCTTC---BCSCCEEETTEEEEEBTTSC
T ss_pred -------CeEEEEECCCCcEEEEEecCCCc---ceeCCEEECCEEEEEeCCCE
Confidence 68999995 68888777653332 23344556899999997654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.9e-06 Score=80.01 Aligned_cols=215 Identities=9% Similarity=-0.019 Sum_probs=133.7
Q ss_pred EcCCCCEEEEe-cCCeEEEEE--CCeee----------EEEe--cCCeEEEEeCCCcEEEEc-C--CCeEEEeeccCCcc
Q 018144 86 MDKNGVIYTAT-RDGWIKRLQ--DGTWV----------NWKF--IDSHLIICDNANGLHKVS-E--DGVENFLSYVNGSK 147 (360)
Q Consensus 86 ~d~~G~l~v~~-~~G~I~~~~--~g~~~----------~~~~--~~g~L~v~~~~~gl~~~~-~--~g~~~l~~~~~~~~ 147 (360)
.|+++.+|++. .+|.|..+| ++++. .+.. .+..+|+++....+..|| . ++ +.+.....+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-- 239 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-- 239 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC--
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC--
Confidence 34456778877 678888888 44332 1222 244689998777788898 4 44 222221122
Q ss_pred ccccccEEEc----CCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--C----------CcCcc
Q 018144 148 LRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G----------FYFAN 210 (360)
Q Consensus 148 ~~~~n~l~~d----~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~----------l~~pn 210 (360)
..|.+++++ +|| .+|+++. ..+.+..+|..|.+...... + .....
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~-----------------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred -CCCceeEEccccCCCCCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 247899999 588 5888753 24678889988776644321 1 11335
Q ss_pred eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHH
Q 018144 211 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 211 gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
++..++++..++++....+.|+.++....+.-....+ ....+|.++.+|++|+ +|++...
T Consensus 302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~----------------- 362 (567)
T 1qks_A 302 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA----------------- 362 (567)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG-----------------
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCC-----------------
Confidence 7888898888888888888999999754221111111 1223678899999997 5666654
Q ss_pred HHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccce-eeEE-EE--CCEEEEEe-CCCCeEEEEeC
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFV-TSGL-QV--DNHLYVIS-LTSNFIGKVQL 359 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~-t~~~-~~--~g~Lylgs-~~~~~i~~~~l 359 (360)
.+.|..+|. +++++..+... |. ..++ .++. .+ ++.+|+.+ +.++.|.+++.
T Consensus 363 -----------------sn~V~ViD~~t~kl~~~i~vg-g~-~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 363 -----------------RNKLVVIDTKEGKLVAIEDTG-GQ-TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp -----------------GTEEEEEETTTTEEEEEEECS-SS-SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred -----------------CCeEEEEECCCCcEEEEEecc-Cc-CCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence 357888885 56776666430 22 1221 2222 23 37899865 56688998875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-05 Score=67.74 Aligned_cols=213 Identities=13% Similarity=0.039 Sum_probs=129.7
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCee--e-E----------EEe-cCC-eEEEEeCCCcEEEEc-CCC--eEE
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW--V-N----------WKF-IDS-HLIICDNANGLHKVS-EDG--VEN 138 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~--~-~----------~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~ 138 (360)
...++++.++|. |++++.+|.|..++ +++. . . +.. +++ .|++++.++.+..++ .++ ...
T Consensus 99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence 456788888876 55666889888888 3331 1 1 111 233 466666556677777 555 333
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
+. ... ..+..++++++|...++ +...|.|..+|..+++.............+++++++
T Consensus 179 ~~-~~~----~~i~~~~~~~~~~~l~~-----------------~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 179 FQ-GHT----DGASCIDISNDGTKLWT-----------------GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp EC-CCS----SCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS
T ss_pred ee-ccc----CceEEEEECCCCCEEEE-----------------EecCCcEEEEECCCCceEeeecCCCceEEEEECCCC
Confidence 31 111 24678899999976664 223578999998877765544444456789999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
+.++++.. .+.|..++.+..+. ..+. ...+....+.++++|++.++...
T Consensus 237 ~~l~~~~~-~~~i~~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------------------- 285 (337)
T 1gxr_A 237 EWLAVGME-SSNVEVLHVNKPDK---YQLH-LHESCVLSLKFAYCGKWFVSTGK-------------------------- 285 (337)
T ss_dssp SEEEEEET-TSCEEEEETTSSCE---EEEC-CCSSCEEEEEECTTSSEEEEEET--------------------------
T ss_pred CEEEEEcC-CCcEEEEECCCCCe---EEEc-CCccceeEEEECCCCCEEEEecC--------------------------
Confidence 97776664 56799998865321 1221 23344677889999986665544
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CC-EEEEEeCCCCeEEEEeC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~Lylgs~~~~~i~~~~l 359 (360)
.+.|..++. .++.+...... ..++++... ++ .|+.++ ....|..+++
T Consensus 286 --------dg~i~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 335 (337)
T 1gxr_A 286 --------DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGS-GDKKATVYEV 335 (337)
T ss_dssp --------TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred --------CCcEEEEECCCCeEEEEecCC-----CcEEEEEECCCCCEEEEec-CCCeEEEEEE
Confidence 256777774 56655444321 246666665 34 455444 5566666653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-05 Score=75.73 Aligned_cols=178 Identities=9% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCCEEEEe-cCCeEEEEE-C-C----eee-EE------------------EecCCeEEEEeCC-------CcEEEEc-CC
Q 018144 89 NGVIYTAT-RDGWIKRLQ-D-G----TWV-NW------------------KFIDSHLIICDNA-------NGLHKVS-ED 134 (360)
Q Consensus 89 ~G~l~v~~-~~G~I~~~~-~-g----~~~-~~------------------~~~~g~L~v~~~~-------~gl~~~~-~~ 134 (360)
...||+.. .+++|+.+| . . ++. .+ ..++| |||+..+ ++++.+| ++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 45788888 788999999 2 2 221 11 11345 9987644 3788898 55
Q ss_pred C--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCC-----ccceecccccCCccEEEEEcCCCCeEEEEeCC--
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP-----HEYCLDILEGKPHGQLLKYDPSSNITTLVADG-- 205 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~-----~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-- 205 (360)
+ ...+. ....+..+++++...+++++.++.. |+. ..+..+.+++....+|..||.++++......-
T Consensus 174 ~~v~~~~~--~~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWE--IDRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp CCEEEECC--SBCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CeEEEEEc--cCCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 5 33332 1222334677888899997666531 110 01111111123467899999987765443221
Q ss_pred -CcCcceEEE--ecCCCEEEEEeC-----CCCEEEEEEecCCcCcceeee--cc-----CC----------CCCCceeEE
Q 018144 206 -FYFANGVAL--SRDEDYVVVCES-----WKFRCRKYWLKGERKGKLETF--AE-----NL----------PGAPDNINL 260 (360)
Q Consensus 206 -l~~pngia~--~~dg~~l~v~~t-----~~~~i~~~~~~g~~~~~~~~~--~~-----~~----------~g~pd~i~~ 260 (360)
...|.++.+ +|+++++|++.. ..+.|.+|..++......+++ .. .+ +..|.+|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 246778877 999999999987 777888776654322111111 00 11 256899999
Q ss_pred cCCCC-EEEEEec
Q 018144 261 APDGT-FWIAIIK 272 (360)
Q Consensus 261 d~~G~-lwva~~~ 272 (360)
++||+ |||++..
T Consensus 329 S~DGrfLYVSnrg 341 (462)
T 2ece_A 329 SLDDKFLYLSLWG 341 (462)
T ss_dssp CTTSCEEEEEETT
T ss_pred CCCCCEEEEEeCC
Confidence 99995 9999887
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.7e-05 Score=75.18 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=135.5
Q ss_pred CCcceEEEcCCC-CEEEEecCCeEEEEE-C-C--ee----------eEEEec-----CC-eEEEEeCC-CcEEEEc-CCC
Q 018144 79 NHPEDASMDKNG-VIYTATRDGWIKRLQ-D-G--TW----------VNWKFI-----DS-HLIICDNA-NGLHKVS-EDG 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~~G~I~~~~-~-g--~~----------~~~~~~-----~g-~L~v~~~~-~gl~~~~-~~g 135 (360)
..|+++++++|| .+|+++.+|.|..+| . . +. ..+... +| .+|+++.. +.+..+| .+.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 478999999987 579998889999998 4 2 11 122333 34 68988865 4566777 555
Q ss_pred --eEEEeec---cCCc---cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeCC
Q 018144 136 --VENFLSY---VNGS---KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADG 205 (360)
Q Consensus 136 --~~~l~~~---~~~~---~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~~ 205 (360)
+..+... .++. +...+..+...+++..|+.. ....|.|..+|..+.+... ....
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~----------------~~~~g~v~~vd~~~~~~~~v~~i~~ 340 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN----------------VKETGKILLVDYTDLNNLKTTEISA 340 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE----------------ETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE----------------ecCCCeEEEEecCCCccceeeeeec
Confidence 4433321 1110 01133466666766544422 2346789999876542211 1123
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC-ceeE-EcCC-CCEEEEEecCchhHHHHhh
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKILN 282 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p-d~i~-~d~~-G~lwva~~~~~~~~~~~~~ 282 (360)
-.++.++.+++||+++|++....++|..+|.+..+....-......| .| .+.. ++++ |.+|++....
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~g--------- 410 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-HPGRGANFVHPTFGPVWATSHMG--------- 410 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-CCTTCEEEEETTTEEEEEEEBSS---------
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC-CCccceeeECCCCCcEEEeCCCC---------
Confidence 45788999999999999999888999999986543211111101111 22 2444 4665 6799876431
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCC--------CcEEEEEeCCCCCcccceeeEEEECCEEEEEeC-C---
Q 018144 283 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL-T--- 350 (360)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~-~--- 350 (360)
.+.|..++.+ .++++.+....+. +.......++.+||+.+- .
T Consensus 411 ------------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 411 ------------------------DDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp ------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSEEEEECTTCSSH
T ss_pred ------------------------CCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCCeEEEecCCCCCc
Confidence 2467777653 4677777654221 111111223478999884 3
Q ss_pred --CCeEEEEeC
Q 018144 351 --SNFIGKVQL 359 (360)
Q Consensus 351 --~~~i~~~~l 359 (360)
++.|+++++
T Consensus 465 ~~~~~v~v~d~ 475 (567)
T 1qks_A 465 EISGSVAVFDI 475 (567)
T ss_dssp HHHTCEEEEEG
T ss_pred ccCceEEEEEC
Confidence 358999875
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-05 Score=71.34 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=126.6
Q ss_pred cceEEEcCCCCEEEEe-cC-------------CeEEEEE-CCee-e--------EEEecCCeEEEEe---C-CCcEEEEc
Q 018144 81 PEDASMDKNGVIYTAT-RD-------------GWIKRLQ-DGTW-V--------NWKFIDSHLIICD---N-ANGLHKVS 132 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~-------------G~I~~~~-~g~~-~--------~~~~~~g~L~v~~---~-~~gl~~~~ 132 (360)
+..|.++ ++.||... .+ ..|++++ +|.. + .+...++.||.++ . ...|++++
T Consensus 57 ~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 57 AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 4455554 55777765 32 4799999 5531 1 2344578899887 2 24688888
Q ss_pred CCC--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc
Q 018144 133 EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 209 (360)
Q Consensus 133 ~~g--~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p 209 (360)
-+| .+.+..... ..++.+| .||+|+.+ ...|++.+.+++..+.+..+ +
T Consensus 136 ~dGs~~~~lt~~~~---------~~~~~~g~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~~---~ 186 (302)
T 3s25_A 136 IDGEEKKKIKNHYL---------FTCNTSDRYFYYNNPK-----------------NGQLYRYDTASQSEALFYDC---N 186 (302)
T ss_dssp TTSCCCEEEESSCC---------CCSEEETTEEEEECTT-----------------TCCEEEEETTTTEEEEEECS---C
T ss_pred CCCCCeEEEeCCCc---------eEeeEECCEEEEEeCC-----------------CceEEEEECCCCCEEEEeCC---C
Confidence 444 555543211 1223444 79998652 34799999887766655443 2
Q ss_pred ceEEEecCCCEEEEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhH
Q 018144 210 NGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLI 287 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~ 287 (360)
..+.+.|+++.+|+++... .+|.+.+++|.. .+++.+. ..| .++++| .||.+....
T Consensus 187 ~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~--~~~---~~~~~g~~Iy~~~~~~-------------- 244 (302)
T 3s25_A 187 CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEA--NIE---HYNVYGSLIFYQRGGD-------------- 244 (302)
T ss_dssp EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCS--CEE---EEEEETTEEEEEECSS--------------
T ss_pred ccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCC--Ccc---eEEECCCEEEEEECCC--------------
Confidence 2245678999999998753 589999998743 3333321 122 255555 465543321
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 288 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
...|.+++.||...+.+...+ +..+...+++||........|.+++++
T Consensus 245 -------------------~~~i~~~~~DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 245 -------------------NPALCVVKNDGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp -------------------SCEEEEEETTSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred -------------------CcEEEEEECCCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEECC
Confidence 257889999987655554322 335667889999999988889888764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-05 Score=70.28 Aligned_cols=200 Identities=9% Similarity=0.093 Sum_probs=121.0
Q ss_pred CCCEEEEe--cCCeEEEEE-CCe-ee--------EEEecCCeEEEEeCC--------------CcEEEEcCCC--eEEEe
Q 018144 89 NGVIYTAT--RDGWIKRLQ-DGT-WV--------NWKFIDSHLIICDNA--------------NGLHKVSEDG--VENFL 140 (360)
Q Consensus 89 ~G~l~v~~--~~G~I~~~~-~g~-~~--------~~~~~~g~L~v~~~~--------------~gl~~~~~~g--~~~l~ 140 (360)
++.||+.. .+++||+++ +|. .+ .+...++.||.+... ..|++++.+| .+.+.
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~ 104 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD 104 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee
Confidence 77899987 468999999 662 22 233446778776543 2577777444 44443
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. . .+.+.++ ++.||++|.+ ......|++++.++...+.+..... .+++++++.
T Consensus 105 ~~-~------~~~~s~~-g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 105 PD-P------CIYASLI-GNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp CS-C------EEEEEEE-TTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred cC-C------ccEEEEe-CCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 22 1 1233332 3479998711 0124579999988666666654422 456888999
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
||+++.+...|++.+++|.. .+.+.+. +..+.+.++ |.||......
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~---~~~l~~~----~~~~~~~P~g~~iy~t~~~~-------------------------- 205 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQS---EALFYDC----NCYKPVVLDDTNVYYMDVNR-------------------------- 205 (302)
T ss_dssp EEEECTTTCCEEEEETTTTE---EEEEECS----CEEEEEEEETTEEEEEEGGG--------------------------
T ss_pred EEEEeCCCceEEEEECCCCC---EEEEeCC----CccceeeecCCEEEEEEcCC--------------------------
Confidence 99999877899999988743 2222221 223445544 4566655441
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEe-CCCCeEEEEeCC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LTSNFIGKVQLS 360 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs-~~~~~i~~~~l~ 360 (360)
...|.+.+.+|...+.+.+.. ...+...++.||..+ -..+.|.++++|
T Consensus 206 -------~~~I~~~~ldG~~~~~Lt~~~------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 206 -------DNAIVHVNINNPNPVVLTEAN------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -------TTEEEEECSSSCCCEECSCSC------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -------CcEEEEEECCCCCeEEEeCCC------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 137888888887655554311 123555677888763 345777777664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-05 Score=72.12 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=71.4
Q ss_pred CeEEEEeCC-CcEEEEc-CCC-e-EEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 117 SHLIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~-~~g-~-~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
..+|++... ..+..++ .++ . ..+.....+.....+.+++++++| .+|+++.........+ ....+.|..
T Consensus 46 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~------~~~~~~i~v 119 (337)
T 1pby_B 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF------EVQPTRVAL 119 (337)
T ss_dssp SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc------cccCceEEE
Confidence 368888765 4577788 666 3 333221111111257899999999 6888752100000000 002468999
Q ss_pred EcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 192 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
+|.++++..........++++++++||+.+|+++ +.|..+++++.
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~i~~~d~~~~ 164 (337)
T 1pby_B 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---RDLHVMDPEAG 164 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---SSEEEEETTTT
T ss_pred EECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---CeEEEEECCCC
Confidence 9998887655444445789999999999898883 56999998643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-05 Score=72.15 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=55.5
Q ss_pred ccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CC-------CcCcceEEEecCCCE
Q 018144 150 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-------FYFANGVALSRDEDY 220 (360)
Q Consensus 150 ~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~-------l~~pngia~~~dg~~ 220 (360)
.| ++++++|| .+|+++....-. ..+...+.|..||+.+.+..... .+ ...|.+++++|||++
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~--------~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRI--------AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred CC-CeEECCCCCEEEEEecccccc--------ccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 46 99999999 599987431000 00122457889999876654321 11 246899999999999
Q ss_pred EEEEeCC-CCEEEEEEecCC
Q 018144 221 VVVCESW-KFRCRKYWLKGE 239 (360)
Q Consensus 221 l~v~~t~-~~~i~~~~~~g~ 239 (360)
||+++.. .+.|..+| +..
T Consensus 139 l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEEEecCCCCeEEEEE-CCC
Confidence 9999864 57899999 754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00021 Score=64.04 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=99.2
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCeeeE-----------EEe-cCCe-EEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVN-----------WKF-IDSH-LIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~~-----------~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
..-.++++.++|... +++.+|.|..++ +++... +.. ++++ |..+..++-+..++ .++ ...+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 455778888888654 555888888777 443221 111 2344 44444444455566 555 3333
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg 218 (360)
. ... ..+..+.+.++|++.++ +...+.|..+|..+++....... ......+++++++
T Consensus 104 ~-~~~----~~v~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 104 K-GHS----NYVFCCNFNPQSNLIVS-----------------GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp E-CCS----SCEEEEEECSSSSEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred c-CCC----CCEEEEEEcCCCCEEEE-----------------EeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence 2 111 24667888999987775 23356788899877765443332 3345789999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.++.+.. .+.|..+++...+ ....+..........+.++++|++.++...
T Consensus 162 ~~l~~~~~-d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 162 SLIVSSSY-DGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp SEEEEEET-TSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEeC-CCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 86665554 5678888875321 122222112222345778999986665443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-05 Score=71.78 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=113.3
Q ss_pred CCcceEEEcCCC-CEEEEec--CCeEEEEE--CCeeeE-EE--------ecCCe-EEEEeCCCcEEEEc-CC-C-eEEEe
Q 018144 79 NHPEDASMDKNG-VIYTATR--DGWIKRLQ--DGTWVN-WK--------FIDSH-LIICDNANGLHKVS-ED-G-VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~--~G~I~~~~--~g~~~~-~~--------~~~g~-L~v~~~~~gl~~~~-~~-g-~~~l~ 140 (360)
..|+.+++++|| .+|+++. ++.|..+| ++++.. +. ..+.+ ++....++.+..++ .+ + +....
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 379999999988 4899873 68899999 565432 21 11222 33333345566666 43 5 42211
Q ss_pred e-ccCCccccccccEEE-cCCCcE-EEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC----------Cc
Q 018144 141 S-YVNGSKLRFANDVVE-ASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----------FY 207 (360)
Q Consensus 141 ~-~~~~~~~~~~n~l~~-d~dG~l-~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----------l~ 207 (360)
. .++.......+...+ .++|++ |+| ..|.|+.+|..++..+....- -.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs-------------------~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVWPT-------------------YTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEEEB-------------------TTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred cceeccccccccccceeEcCCCcEEEEe-------------------CCCEEEEEECCCCcceeecceeccccccccccc
Confidence 1 111111111222344 378875 543 246899999876654332110 11
Q ss_pred Ccc---eEEEecCCCEEEEEeC---------CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC--EEEEEecC
Q 018144 208 FAN---GVALSRDEDYVVVCES---------WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKL 273 (360)
Q Consensus 208 ~pn---gia~~~dg~~l~v~~t---------~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~ 273 (360)
.|. .++++++++.+|++.. ..++|+.+|.+..+.- ..+. ....|.++.+++||. ||+++..
T Consensus 278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~--~~i~--vg~~~~~lavs~D~~~~ly~tn~~- 352 (386)
T 3sjl_D 278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--AKFE--MGHEIDSINVSQDEKPLLYALSTG- 352 (386)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEE--EEEEECEEEECSSSSCEEEEEETT-
T ss_pred cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE--EEEE--CCCCcceEEECCCCCeEEEEEcCC-
Confidence 233 4888999999999853 2368999998653321 1111 112478999999995 5665543
Q ss_pred chhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCC
Q 018144 274 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT 327 (360)
Q Consensus 274 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~ 327 (360)
.+.|..+|. .++++..+..+.
T Consensus 353 ---------------------------------~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 353 ---------------------------------DKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp ---------------------------------TTEEEEEETTTCCEEEEECCCC
T ss_pred ---------------------------------CCeEEEEECCCCcEEEEecCCC
Confidence 357889995 789998887653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00036 Score=63.32 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=126.6
Q ss_pred CCcceEEEcCCCCEEE-EecCCeEEEEE--CCeee-EEE-----------ecCCe-EEEEeCCCcEEEEc-CCC-e-EEE
Q 018144 79 NHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWV-NWK-----------FIDSH-LIICDNANGLHKVS-EDG-V-ENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v-~~~~G~I~~~~--~g~~~-~~~-----------~~~g~-L~v~~~~~gl~~~~-~~g-~-~~l 139 (360)
..-.++++.+++.+.+ ++.+|.|..++ +++.. .+. .++++ |..+.....+..++ .++ . ..+
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 3455677777776554 44788888888 55322 111 12344 44444344455566 555 2 222
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg 218 (360)
. . .+ ..+..+++.++|+..++ +...|.|..+|..+++......+ ....+.++++||+
T Consensus 161 ~-~-~~---~~v~~~~~spdg~~las-----------------g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 161 D-T-RG---KFILSIAYSPDGKYLAS-----------------GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp E-C-SS---SCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred c-C-CC---ceEEEEEECCCCCEEEE-----------------EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 1 1 11 24678899999987765 23356788899888876554443 3346899999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
+.| ++....+.|..+++.... ....+. ...+....+++.++|.+.++...
T Consensus 219 ~~l-~s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~-------------------------- 268 (321)
T 3ow8_A 219 QLL-VTASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFCPDDTHFVSSSS-------------------------- 268 (321)
T ss_dssp CEE-EEECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET--------------------------
T ss_pred CEE-EEEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEECCCCCEEEEEeC--------------------------
Confidence 855 444456678888875422 112221 22234567888999987665544
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. .++.+..+....+ .+.++... ++...+..-....|..+++
T Consensus 269 --------D~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 269 --------DKSVKVWDVGTRTCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp --------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred --------CCcEEEEeCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 245666664 5677777654333 46677776 3444444444555665543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-05 Score=72.19 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
.+.|..||.++++......... |.++++++||++||++.. +.|..||.+..++.....+. .....|.+++++++|+
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred CceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 3579999999888765443334 999999999999998885 78999997643112222221 2334699999999985
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00036 Score=65.07 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=124.5
Q ss_pred EecCCCCCCcceEEEcCCC-CEEEEec----------CCeEEEEE--CCeeeE------------------EE--ecCCe
Q 018144 72 KVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWVN------------------WK--FIDSH 118 (360)
Q Consensus 72 ~~~~~~~~~Pe~i~~d~~G-~l~v~~~----------~G~I~~~~--~g~~~~------------------~~--~~~g~ 118 (360)
+++.| ..| ++++.+|| .+|+++. ++.|..+| +++... +. ..+..
T Consensus 62 ~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 62 HVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 45544 478 99999987 5888862 45688888 332211 11 12456
Q ss_pred EEEEeCC--CcEEEEcCCCeEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 119 LIICDNA--NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 119 L~v~~~~--~gl~~~~~~g~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
||+++.. +.+..+| ...+......+ .+.++.+.++| +.|++.. ..|.+..+|.
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~-----------------~dg~~~~vd~- 194 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLC-----------------AQGGLAKTDH- 194 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCEEeEEcC-----CCceEEEEeCCCceEEEEc-----------------CCCCEEEEEC-
Confidence 8888743 4577777 43111111011 11223344444 5666532 3567888887
Q ss_pred CCeEEEEeC-----CCcCc--ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec---c---CCCCCCce---eE
Q 018144 196 SNITTLVAD-----GFYFA--NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA---E---NLPGAPDN---IN 259 (360)
Q Consensus 196 tg~~~~~~~-----~l~~p--ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~---~---~~~g~pd~---i~ 259 (360)
+++...... ....| ...++.+++..+|+... .+.++.++..+........+. . ...-.|++ +.
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC-CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 665542111 01111 22345566555555553 467998888643211111111 0 01113666 78
Q ss_pred EcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeE
Q 018144 260 LAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSG 337 (360)
Q Consensus 260 ~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~ 337 (360)
++++| .+||+....... - .....+.|..+|.+ ++++..+..+. .+.++
T Consensus 274 ~s~d~~~lyV~~~~~~~~----~---------------------~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~~i 323 (373)
T 2mad_H 274 YLKSSDGIYLLTSEQSAW----K---------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVDAI 323 (373)
T ss_pred ECCCCCEEEEEeccCCcc----c---------------------ccCCCCeEEEEECCCCEEEEEEECCC-----CcCeE
Confidence 88887 599987531000 0 00013579999975 67778875433 23444
Q ss_pred EEE--CC-EEEEEeCCCCeEEEEeCC
Q 018144 338 LQV--DN-HLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 338 ~~~--~g-~Lylgs~~~~~i~~~~l~ 360 (360)
... +. .||+++..++.|.+++++
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECC
Confidence 443 45 588877789999999863
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-05 Score=75.47 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=115.0
Q ss_pred EecCCCCCCcceEEEcC--CC-CEEEEe-cCCeEEEEE--CCee------------eEEE----ecCCeEEEEeC-----
Q 018144 72 KVGEGSVNHPEDASMDK--NG-VIYTAT-RDGWIKRLQ--DGTW------------VNWK----FIDSHLIICDN----- 124 (360)
Q Consensus 72 ~~~~~~~~~Pe~i~~d~--~G-~l~v~~-~~G~I~~~~--~g~~------------~~~~----~~~g~L~v~~~----- 124 (360)
.+.-|....|..-..|. || .+|+.+ .+++|.+++ +.+. +.+. ..++.+|+++.
T Consensus 81 ~~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 81 IHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp SCCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred ecccCCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccccc
Confidence 35456566765444442 43 789988 677899998 3331 1222 23456888741
Q ss_pred ------------CC-cEEEEc-CCC--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCC---------Cccce-
Q 018144 125 ------------AN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL---------PHEYC- 177 (360)
Q Consensus 125 ------------~~-gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~---------~~~~~- 177 (360)
+. -+..+| .+. ...+. ..+ .|.++++++|| .+|+|...+.-+ ..++.
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~--Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVL--VSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE--ESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEE--eCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 12 233455 333 11121 112 47899999998 588877543221 00110
Q ss_pred -------eccc-cc--CCccEEEEEcCCC--CeE-EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc----
Q 018144 178 -------LDIL-EG--KPHGQLLKYDPSS--NIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER---- 240 (360)
Q Consensus 178 -------~~~~-~~--~~~g~l~~~d~~t--g~~-~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~---- 240 (360)
.... .+ ...++|-.+|..+ ++. ......-..|.|+.++|||+++|+++...+.|..|+.+..+
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~ 314 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY 314 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc
Confidence 0000 01 0124588999886 433 33333446899999999999999999999999999986321
Q ss_pred --Cc-ceeeeccCCC-CCCceeEEcCCCCEEEEEec
Q 018144 241 --KG-KLETFAENLP-GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 241 --~~-~~~~~~~~~~-g~pd~i~~d~~G~lwva~~~ 272 (360)
+. ...+..+... ..|-.+++|++|++|+++.-
T Consensus 315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 315 ENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL 350 (595)
T ss_dssp SCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred cccCcccceEEEcCCCCCcceEEECCCCeEEEEEec
Confidence 11 1112222222 25999999999999998865
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.7e-06 Score=78.59 Aligned_cols=121 Identities=13% Similarity=0.012 Sum_probs=82.2
Q ss_pred CCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC---------C
Q 018144 158 SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES---------W 227 (360)
Q Consensus 158 ~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t---------~ 227 (360)
+++ ++|+++.... .. .+.|..||+.++++.........| |+++++||+.+||+++ .
T Consensus 82 ~~~~~vyV~n~~~~------------~~-~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 82 PDARRVYIQDPAHF------------AA-ITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp CCTTEEEEEECTTT------------CS-SEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEECCCcC------------CC-CCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCC
Confidence 344 6999986410 00 168999999999886554444578 9999999999999986 2
Q ss_pred CCEEEEEEecCCcCcceeeecc-C----CCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 228 KFRCRKYWLKGERKGKLETFAE-N----LPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~-~----~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
.+.|..||....+.. .++-.. . ....|.++++++|| .+||+....
T Consensus 148 ~~~VsviD~~t~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~---------------------------- 198 (426)
T 3c75_H 148 TDYVEVFDPVTFLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP---------------------------- 198 (426)
T ss_dssp EEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS----------------------------
T ss_pred CCEEEEEECCCCcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCC----------------------------
Confidence 456899987543221 111111 0 01358999999999 599987531
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCC
Q 018144 302 ITLGGGAHLIHVAE-DGTIIRNLVDP 326 (360)
Q Consensus 302 ~~~~~~~~v~~~~~-~g~~~~~~~~~ 326 (360)
.+.|..+|. .++++..+..+
T Consensus 199 -----~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 199 -----APAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp -----SCEEEEEETTTTEEEEEEECC
T ss_pred -----CCeEEEEECCCCeEEEEEEcC
Confidence 257889996 56777777654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00022 Score=69.63 Aligned_cols=212 Identities=12% Similarity=0.155 Sum_probs=125.6
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE-CCeee-----------EEEe-cCCe-EEEEeCCCcEEEEcCCC--eEEEee
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ-DGTWV-----------NWKF-IDSH-LIICDNANGLHKVSEDG--VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~-~g~~~-----------~~~~-~~g~-L~v~~~~~gl~~~~~~g--~~~l~~ 141 (360)
....++++.++|... +++.+|.|..++ +++.. .+.. ++|+ |..+..++.+..++.++ ...+..
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~ 424 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 424 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC
Confidence 345678888887654 455788887777 55321 1222 2344 44444444455555544 433321
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l 221 (360)
. . ..+.++++.+|+...++- ...+.|..+|.+......+.........++++||++.|
T Consensus 425 ~-~----~~v~~~~~s~d~~~l~~~-----------------~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 425 H-S----SSVWGVAFSPDDQTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp C-S----SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred C-C----CCeEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 1 1 246788999999876652 23567888887644444444334456789999999866
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
..+. ..+.|..++.++.. ...+. ........+++.++|++.++...
T Consensus 483 as~~-~d~~i~iw~~~~~~---~~~~~-~h~~~v~~l~~s~dg~~l~s~~~----------------------------- 528 (577)
T 2ymu_A 483 ASAS-DDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASD----------------------------- 528 (577)
T ss_dssp EEEE-TTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSSCEEEEET-----------------------------
T ss_pred EEEe-CCCEEEEEcCCCCE---EEEEe-CCCCCEEEEEEcCCCCEEEEEEC-----------------------------
Confidence 5554 45678878765432 22222 22234567889999986655443
Q ss_pred ccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCE-EEEEeCCCCeEEE
Q 018144 302 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGK 356 (360)
Q Consensus 302 ~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-Lylgs~~~~~i~~ 356 (360)
.+.|..+|.+|+.+..+....+ .++++.+. +|+ |.-++. ...|.+
T Consensus 529 -----dg~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~-D~~i~~ 575 (577)
T 2ymu_A 529 -----DKTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIASASS-DKTVKL 575 (577)
T ss_dssp -----TSEEEEECTTSCEEEEEECCSS----CEEEEEECTTSSCEEEEET-TSCEEE
T ss_pred -----cCEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCEEEE
Confidence 2567778888998888765333 57777776 444 444443 333443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00045 Score=61.87 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCe----eeE------------EEe-cCC-eEEEEeCCCcEEEEc-CCC-e
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT----WVN------------WKF-IDS-HLIICDNANGLHKVS-EDG-V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~----~~~------------~~~-~~g-~L~v~~~~~gl~~~~-~~g-~ 136 (360)
....++++.++|.+.++..+|.|..++ +++ ... +.. +++ .|+++..++.+..++ .++ .
T Consensus 52 ~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred CceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence 456688899888766655589888888 321 111 111 233 355655555566666 444 2
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEe
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALS 215 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~ 215 (360)
...... .+. ...+..+++.++|+..++ +...|.|..+|..+++....... ......++++
T Consensus 132 ~~~~~~-~~~-~~~i~~~~~~~~~~~l~~-----------------~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 132 RIKAEL-TSS-APACYALAISPDSKVCFS-----------------CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EEEEEE-ECS-SSCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ceeeec-ccC-CCceEEEEECCCCCEEEE-----------------EeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 222111 111 124678889999876654 22356788999887766544332 3456789999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++++.++.+.. .+.|..+++...+. ...+ ...+....+.++++|++.+...
T Consensus 193 ~~~~~l~~~~~-dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 193 NDGTKLWTGGL-DNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTSSEEEEEET-TSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEec-CCcEEEEECCCCce--Eeee--cCCCceEEEEECCCCCEEEEEc
Confidence 99986766654 57899998764321 1112 1233456788888887555443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-05 Score=75.68 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=82.2
Q ss_pred EcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC-------
Q 018144 156 EASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW------- 227 (360)
Q Consensus 156 ~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~------- 227 (360)
..++| ++|++|... ....+.|+.+|..++++.........|+ ++++|||+.+|++++.
T Consensus 40 ~~pd~~~vyV~~~~~-------------~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G 105 (386)
T 3sjl_D 40 PAPDARRVYVNDPAH-------------FAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARG 105 (386)
T ss_dssp CCCCTTEEEEEECGG-------------GCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEcCcc-------------cCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccC
Confidence 35677 699998631 1124689999999988765444445575 9999999999999852
Q ss_pred --CCEEEEEEecCCcCcceeeeccC-C----CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 228 --KFRCRKYWLKGERKGKLETFAEN-L----PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 228 --~~~i~~~~~~g~~~~~~~~~~~~-~----~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
.+.|.+||....+.. .++-... . ...|.++++++||+ +||++...
T Consensus 106 ~~~~~VsviD~~t~~v~-~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~-------------------------- 158 (386)
T 3sjl_D 106 ERTDYVEVFDPVTLLPT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-------------------------- 158 (386)
T ss_dssp EEEEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--------------------------
T ss_pred CCCCEEEEEECCCCeEE-EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC--------------------------
Confidence 345888887543211 1111100 0 12699999999995 89987531
Q ss_pred ccccCCCceEEEEECC-CCcEEEEEeCC
Q 018144 300 QFITLGGGAHLIHVAE-DGTIIRNLVDP 326 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~-~g~~~~~~~~~ 326 (360)
.+.|..+|. .++++..+..+
T Consensus 159 -------~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 159 -------APAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp -------SCEEEEEETTTTEEEEEEECC
T ss_pred -------CCeEEEEECCCCcEEEEEECC
Confidence 257888885 57777777654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00033 Score=64.87 Aligned_cols=44 Identities=7% Similarity=-0.006 Sum_probs=30.7
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
..|..+|. .++++..+.... +.++... +.+||+++. +.|.++++
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~------p~~ia~spdg~~l~v~n~--~~v~v~D~ 332 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD------ALSMTIDQQRNLMLTLDG--GNVNVYDI 332 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT------CCEEEEETTTTEEEEECS--SCEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCC------eeEEEECCCCCEEEEeCC--CeEEEEEC
Confidence 47888886 577777776432 4455554 478998874 88998875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00053 Score=62.52 Aligned_cols=220 Identities=9% Similarity=0.018 Sum_probs=123.2
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE--CCe---eeEEE----------e-cCC-eEEEEeCCCcEEEEc-CCC-eEEE
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGT---WVNWK----------F-IDS-HLIICDNANGLHKVS-EDG-VENF 139 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~---~~~~~----------~-~~g-~L~v~~~~~gl~~~~-~~g-~~~l 139 (360)
.-.++++.++|.+. +++.+|.|..++ +++ ...+. . +++ .|+.+..++.+..++ .++ ....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 44677888888655 455888888887 553 22221 1 233 355555444565666 455 3222
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----EEEEeCC-CcCcceEEE
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADG-FYFANGVAL 214 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----~~~~~~~-l~~pngia~ 214 (360)
...... ...+..+++.++|+..++- ...+.|..+|..+++ ....... ......+++
T Consensus 90 ~~~~~~--~~~v~~~~~~~~~~~l~~~-----------------~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 90 LVILRI--NRAARCVRWAPNEKKFAVG-----------------SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp EECCCC--SSCEEEEEECTTSSEEEEE-----------------ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred EEeecC--CCceeEEEECCCCCEEEEE-----------------eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 111111 1346788999999766642 223456555554443 2222222 345678999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCc---------------Ccc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHH
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGER---------------KGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRM 278 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~---------------~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~ 278 (360)
+++++.++.+.. .+.|..|++.... .+. ...+. ...+....+.++++|++.++...
T Consensus 151 ~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~------ 222 (372)
T 1k8k_C 151 HPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSH------ 222 (372)
T ss_dssp CTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEET------
T ss_pred cCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeC------
Confidence 999986665554 5678888853110 011 11111 12234567888999975554443
Q ss_pred HHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEE
Q 018144 279 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 356 (360)
Q Consensus 279 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~ 356 (360)
.+.|..+|. +++.+..+....+ .+..+... ++.+.+++ ....|..
T Consensus 223 ----------------------------d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 223 ----------------------------DSTVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVL 269 (372)
T ss_dssp ----------------------------TTEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred ----------------------------CCEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEE
Confidence 256777774 6777777765432 45666665 57766666 6666666
Q ss_pred EeC
Q 018144 357 VQL 359 (360)
Q Consensus 357 ~~l 359 (360)
+++
T Consensus 270 ~~~ 272 (372)
T 1k8k_C 270 FTY 272 (372)
T ss_dssp EEE
T ss_pred EEc
Confidence 553
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00061 Score=66.42 Aligned_cols=167 Identities=13% Similarity=0.190 Sum_probs=95.9
Q ss_pred CCcceEEEcCCCCEEE-EecCCeEEEEE-CCe-eeE----------EEe-cCCe-EEEEeCCCcEEEEcCCC--eEEEee
Q 018144 79 NHPEDASMDKNGVIYT-ATRDGWIKRLQ-DGT-WVN----------WKF-IDSH-LIICDNANGLHKVSEDG--VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v-~~~~G~I~~~~-~g~-~~~----------~~~-~~g~-L~v~~~~~gl~~~~~~g--~~~l~~ 141 (360)
....++++.++|...+ ++.+|.|..++ +++ ... +.. ++|+ |..+..++.+..++.++ +..+..
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC
Confidence 3456788888876554 45788887777 442 221 111 2344 33444333344445444 333321
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l 221 (360)
.. ..+..++++++|+..++ +...+.|..+|.+......+...-....+++++||++.+
T Consensus 384 -~~----~~v~~~~~s~dg~~l~~-----------------~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 384 -HS----SSVRGVAFSPDGQTIAS-----------------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp -CS----SCEEEEEECTTSSCEEE-----------------EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred -CC----CCeEEEEECCCCCEEEE-----------------EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 11 24678899999976664 223567888886533334443333456789999999866
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..+. ..+.|..++.+++. ...+. ........++++++|.+.++...
T Consensus 442 ~~~~-~d~~v~~w~~~~~~---~~~~~-~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 442 ASAS-DDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp EEEE-TTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSCEEEEEET
T ss_pred EEEc-CCCEEEEEECCCCE---EEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 5555 45678888865432 22222 22234567888999987665544
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0023 Score=57.85 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=93.7
Q ss_pred CcceEEEcCC----C-CEEEEecCCeEEEEE--CCeeeE-EE------------e-cCCe-EEEEeCCCcEEEEc-CCC-
Q 018144 80 HPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTWVN-WK------------F-IDSH-LIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 80 ~Pe~i~~d~~----G-~l~v~~~~G~I~~~~--~g~~~~-~~------------~-~~g~-L~v~~~~~gl~~~~-~~g- 135 (360)
.-.++++.++ + .|..|+.||.|..++ +++... +. . .++. +..+..+.-+..++ .++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 3456666543 3 355666888776666 443221 11 1 1233 33334344455556 555
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVA 213 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia 213 (360)
...+... . ..+..+++.++|+..++- ...|.+..+|..+++.... .........++
T Consensus 114 ~~~~~~~~-~----~~~~~~~~spdg~~l~~g-----------------~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 114 QIKSIDAG-P----VDAWTLAFSPDSQYLATG-----------------THVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEECC-T----TCCCCEEECTTSSEEEEE-----------------CTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred EEEEEeCC-C----ccEEEEEECCCCCEEEEE-----------------cCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 3333211 1 235678999999877752 3357788888876665433 23334567899
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++||++.+..+.. .+.|..+++...+ ....+. ........++++++|.+.++..
T Consensus 172 ~spdg~~lasg~~-dg~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 172 YSPDGKYLASGAI-DGIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp ECTTSSEEEEEET-TSCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTSCEEEEEC
T ss_pred ECCCCCEEEEEcC-CCeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCCCEEEEEc
Confidence 9999996666554 5678888875422 112221 2223356788899888666543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-05 Score=71.82 Aligned_cols=78 Identities=9% Similarity=-0.036 Sum_probs=54.8
Q ss_pred ccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-C-------CcCcceEEEecCCCE
Q 018144 150 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G-------FYFANGVALSRDEDY 220 (360)
Q Consensus 150 ~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~-------l~~pngia~~~dg~~ 220 (360)
.| ++++++|| .+|+++.....+ ..++..+.|..||+.+++...... + ...|.+++++|||++
T Consensus 67 ~P-~i~~spDg~~lyVan~~~~r~--------~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 67 LS-LAVAGHSGSDFALASTSFARS--------AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137 (368)
T ss_dssp TC-EEEECTTSSCEEEEEEEETTT--------TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred CC-ceEECCCCCEEEEEccccccc--------ccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 36 89999999 699997531100 012235689999999887754321 1 257999999999999
Q ss_pred EEEEeCC-CCEEEE--EEe
Q 018144 221 VVVCESW-KFRCRK--YWL 236 (360)
Q Consensus 221 l~v~~t~-~~~i~~--~~~ 236 (360)
+||++.. .+.+.. +|.
T Consensus 138 lyVan~~~~~~v~V~~iD~ 156 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp EEEEECSSSCEEEEEETTT
T ss_pred EEEEccCCCCeEEEEEEch
Confidence 9999864 456666 554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00051 Score=64.83 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=78.8
Q ss_pred eEEEEeCCC---cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 118 HLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 118 ~L~v~~~~~---gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
.|..+.... .++.++ .+| .+.+... . ..+..+++++||+ |+++-+. .....|+.
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~spdg~~la~~~~~---------------~g~~~i~~ 251 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAFALSK---------------TGSLNLYV 251 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEE
T ss_pred EEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcCCCCEEEEEEec---------------CCCceEEE
Confidence 455555443 577777 666 5444221 1 2456889999996 6655321 12346999
Q ss_pred EcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 192 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
+|..+++...+.........++++|||+.++++.... .+|+.++.++.+. ..+. ........++++++|...+.
T Consensus 252 ~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~-~~~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 252 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRIT-WEGSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECC-CSSSEEEEEEECTTSSEEEE
T ss_pred EECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEe-cCCCcccCeEECCCCCEEEE
Confidence 9998888766554444567899999999777776432 3788888865432 2221 11223445778899974443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00069 Score=59.19 Aligned_cols=134 Identities=14% Similarity=0.125 Sum_probs=76.8
Q ss_pred CCeEEEEeCCCcEEEEc-CC-C-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~-g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+|+.++......++.++ .+ + ...+.... ....+.+++++++|+..++-... ......|+.+
T Consensus 52 dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~-------------~~~~~~l~~~ 115 (297)
T 2ojh_A 52 DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGF---ATICNNDHGISPDGALYAISDKV-------------EFGKSAIYLL 115 (297)
T ss_dssp TSSEEEEEETTEEEEEESSSCCSCEECCCTT---CCCBCSCCEECTTSSEEEEEECT-------------TTSSCEEEEE
T ss_pred CCCEEEEEcCCeEEEEeCCCCCCceEecccc---ccccccceEECCCCCEEEEEEeC-------------CCCcceEEEE
Confidence 45433333356677787 66 6 44432221 11356788999999744432110 1124689999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC--EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 269 (360)
+..+++...+.. ....+.+++++|++.++++....+ +|+.++.++. ....+. ...+.+..+.++++|+ ++++
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 116 PSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLT-HGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp ETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECC-CSSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcc-cCCCccccceECCCCCEEEEE
Confidence 987776655433 234778899999998876554444 4555555432 222222 2233456788899987 4444
Q ss_pred E
Q 018144 270 I 270 (360)
Q Consensus 270 ~ 270 (360)
.
T Consensus 191 ~ 191 (297)
T 2ojh_A 191 S 191 (297)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00033 Score=66.14 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=115.7
Q ss_pred CcceEEEcCCCC-EEEEecC---CeEEEEE--CCeeeEEE-----------ecCCe-EEEEeCC---CcEEEEc-CCC-e
Q 018144 80 HPEDASMDKNGV-IYTATRD---GWIKRLQ--DGTWVNWK-----------FIDSH-LIICDNA---NGLHKVS-EDG-V 136 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~---G~I~~~~--~g~~~~~~-----------~~~g~-L~v~~~~---~gl~~~~-~~g-~ 136 (360)
...++++.++|. |.+++.+ ..|+.++ +|+...+. .++|+ |+++... ..|+.++ .++ .
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence 456678888886 4445444 3788888 55443322 12444 5534322 2377777 566 5
Q ss_pred EEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEe
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 215 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~ 215 (360)
..+... . .....+++++||+ |+++... .....|+.+|..+++.+.+.........++++
T Consensus 260 ~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s 319 (415)
T 2hqs_A 260 RQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVS 319 (415)
T ss_dssp EECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred EeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEEC
Confidence 443211 1 2356788999996 5554211 11237999999888766554434456688999
Q ss_pred cCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHH
Q 018144 216 RDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLA 292 (360)
Q Consensus 216 ~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~ 292 (360)
|||+.++++... ...|+.+++++.+ ...+... .....+++.++|+. ..+....
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~~------------------- 375 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQG------------------- 375 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEET-------------------
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcCC-------------------
Confidence 999988877654 3478888886532 2222211 24567889999974 4443321
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEeCCCC
Q 018144 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 328 (360)
....|+.++.+|+....+....|
T Consensus 376 -------------~~~~l~~~d~~g~~~~~l~~~~~ 398 (415)
T 2hqs_A 376 -------------MGSVLNLVSTDGRFKARLPATDG 398 (415)
T ss_dssp -------------TEEEEEEEETTSCCEEECCCSSS
T ss_pred -------------CccEEEEEECCCCcEEEeeCCCC
Confidence 12378888888887777665444
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0011 Score=61.75 Aligned_cols=178 Identities=8% Similarity=0.038 Sum_probs=112.5
Q ss_pred CCCCcceEEEcCCCCEEEEecC----------------CeEEEEE--CC--eee-E----------------EEec----
Q 018144 77 SVNHPEDASMDKNGVIYTATRD----------------GWIKRLQ--DG--TWV-N----------------WKFI---- 115 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~~----------------G~I~~~~--~g--~~~-~----------------~~~~---- 115 (360)
.+.+.-.+.+|+.|.||+-+.+ -+|+.+| ++ +.. . +...
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 3788999999999999998722 1588888 44 322 1 1111
Q ss_pred -----CCeEEEEeCC-CcEEEEc-CCC--eEEEeec----------cCCccc---cccccEEEcCC----C-cEEEEeCC
Q 018144 116 -----DSHLIICDNA-NGLHKVS-EDG--VENFLSY----------VNGSKL---RFANDVVEASD----G-SLYFTVSS 168 (360)
Q Consensus 116 -----~g~L~v~~~~-~gl~~~~-~~g--~~~l~~~----------~~~~~~---~~~n~l~~d~d----G-~l~vtd~~ 168 (360)
++.+||+|.. .||+.+| .+| .+.+... ..|..+ ..+++|+++++ + .||+.--+
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 3569999975 6999999 777 4433110 123222 36778888876 4 68886432
Q ss_pred CCCCCccceecccccCCccEEEEEcC------C-CCeEEEEeCCC--cCcceEEEe-cCCCEEEEEeCCCCEEEEEEecC
Q 018144 169 SKYLPHEYCLDILEGKPHGQLLKYDP------S-SNITTLVADGF--YFANGVALS-RDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~g~l~~~d~------~-tg~~~~~~~~l--~~pngia~~-~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
..++|++.. . ..+++.+.+-. ...-+.+++ .+| .||+++...+.|.+++.++
T Consensus 245 -----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 245 -----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTS
T ss_pred -----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCC
Confidence 225666641 1 12333332221 222346676 555 6999999999999999876
Q ss_pred -Cc-CcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 018144 239 -ER-KGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 239 -~~-~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+. ..+.+++... .--.|+++.+|.+|.||+....
T Consensus 307 ~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 307 MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp CSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred CccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence 31 2344554432 2236999999999999998765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00079 Score=61.86 Aligned_cols=163 Identities=9% Similarity=0.050 Sum_probs=96.0
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCee---------------eEEEe-cCCe-EEEEeCCCcEEEEc-CCC--eEE
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW---------------VNWKF-IDSH-LIICDNANGLHKVS-EDG--VEN 138 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~---------------~~~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~ 138 (360)
-.++++.+++.|.+++.+|.|..++ +++. ..+.+ ++|+ |..++.++-+..++ .++ +..
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3567888899999999999888877 4421 11111 2444 44444444465666 666 333
Q ss_pred EeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC---CCcCcceEEE
Q 018144 139 FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVAL 214 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~---~l~~pngia~ 214 (360)
+. ... ..++.+++.++| .++++- ..++.|..+|..+++...... .....+.+++
T Consensus 165 ~~-~h~----~~V~~~~~~~~~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 165 YR-AHA----AQVTCVAASPHKDSVFLSC-----------------SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp EC-CCS----SCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred Ec-CcC----CceEEEEecCCCCCceeee-----------------ccccccccccccccceeeeeecceeeccceeeee
Confidence 31 111 346788888887 576652 235678888987776544322 1234678899
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
++++..++++....+.|..+|+...+. ...+. ........+++.++|.-++
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSSCCE
T ss_pred cCCCCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCCeEE
Confidence 986655666666667888888754321 12222 1223345678888885333
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0013 Score=62.27 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-----EeCCCcCcceEEEecC---CCEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGVALSRD---EDYV 221 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-----~~~~l~~pngia~~~d---g~~l 221 (360)
.+..++++++|...++ +...|.++.++..+++... +.......+.+++++| ++.+
T Consensus 151 ~v~~~~~sp~~~~l~~-----------------~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 213 (450)
T 2vdu_B 151 RPNAISIAEDDTTVII-----------------ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI 213 (450)
T ss_dssp CEEEEEECTTSSEEEE-----------------EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE
T ss_pred CceEEEEcCCCCEEEE-----------------EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE
Confidence 4678899999965553 2235678888876554321 1112235678999999 8756
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.+. ..+.|..+++...+ ....+.....+....+++. +|++.++...
T Consensus 214 ~s~~-~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 214 ITSD-RDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EEEE-TTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred EEEc-CCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 5555 45678888875432 1222222233446778888 8876665443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0022 Score=58.31 Aligned_cols=212 Identities=12% Similarity=0.096 Sum_probs=124.8
Q ss_pred cceEEEcCCCCEE-EEecCCeEEEEE--CCe--ee---E----------EE-ecCCeEEEEeCCCcEEEEc-CCC--eEE
Q 018144 81 PEDASMDKNGVIY-TATRDGWIKRLQ--DGT--WV---N----------WK-FIDSHLIICDNANGLHKVS-EDG--VEN 138 (360)
Q Consensus 81 Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~--~~---~----------~~-~~~g~L~v~~~~~gl~~~~-~~g--~~~ 138 (360)
..++++.++|... +++.+|.|..++ +++ .. . +. ..++.|..+..++.+..++ .++ ...
T Consensus 100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE
Confidence 4467788877654 455788877777 221 11 1 11 1355666666555666667 566 333
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD 217 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~d 217 (360)
+ .... ..+..+++.++|.++++ +...+.|..+|..+++......+ ....+.++++|+
T Consensus 180 ~-~~h~----~~v~~~~~~~~~~~l~s-----------------g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 180 F-TGHT----GDVMSLSLAPDTRLFVS-----------------GACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp E-CCCS----SCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred E-cCCC----CceEEEEECCCCCEEEE-----------------EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC
Confidence 3 1111 24678899999988776 23356788899877765543333 345788999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
++.++.+. ..+.|..+++.... ....+.. ........++++++|.+.++...
T Consensus 238 ~~~l~s~s-~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------------------------ 290 (340)
T 1got_B 238 GNAFATGS-DDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYD------------------------ 290 (340)
T ss_dssp SSEEEEEE-TTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET------------------------
T ss_pred CCEEEEEc-CCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECC------------------------
Confidence 98665554 45678888875321 1122211 11112456788999987776554
Q ss_pred cccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCE-EEEEeCCCCeEEE
Q 018144 297 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGK 356 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-Lylgs~~~~~i~~ 356 (360)
.+.|..+|. .++.+..+....+ .++++... +|. |.-|+. ...|..
T Consensus 291 ----------d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~-D~~i~i 338 (340)
T 1got_B 291 ----------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSW-DSFLKI 338 (340)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEET-TSCEEE
T ss_pred ----------CCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcC-CccEEe
Confidence 256777774 5677777664333 46677665 344 444443 334433
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0021 Score=58.53 Aligned_cols=171 Identities=11% Similarity=0.052 Sum_probs=95.4
Q ss_pred CCCcceEEEcCCCCEE-EEecCCeEEEEE--CCee-eEEE----------e-cCCe-EEEEeCCCcEEEEc-CCC---eE
Q 018144 78 VNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWK----------F-IDSH-LIICDNANGLHKVS-EDG---VE 137 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~-~~~~----------~-~~g~-L~v~~~~~gl~~~~-~~g---~~ 137 (360)
...-.++++.++|.+. .++.+|.|..++ +++. ..+. . ++|+ |..+..++-+..++ .++ .+
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 3455678888888654 555899988888 4432 1111 1 2343 44444444444444 322 22
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEec
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR 216 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~ 216 (360)
.... ..+. ...+..+.+.+++.+..+ ...+.|..+|..+++......+ ......+++++
T Consensus 135 ~~~~-~~~h-~~~v~~~~~~~~~~l~s~------------------s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 135 VSRE-LAGH-TGYLSCCRFLDDNQIVTS------------------SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp EEEE-EECC-SSCEEEEEEEETTEEEEE------------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred eEEE-ecCC-CccEEEEEECCCCcEEEE------------------ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 2211 1111 123455666677765443 2356788889887776544333 33567899999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++.+ ++....+.|..+++.... ....+. ........+++.++|++.++...
T Consensus 195 ~~~~l-~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 195 DTRLF-VSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp TSSEE-EEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEE-EEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence 99854 444456678888875321 122222 22334567888999987665443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00085 Score=67.46 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=99.1
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEEe-----------cCCe-EEEEeCCCcEEEEc-CC-----C-eE
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF-----------IDSH-LIICDNANGLHKVS-ED-----G-VE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~~-----------~~g~-L~v~~~~~gl~~~~-~~-----g-~~ 137 (360)
..+.++++.+++.+.++ .++.|+.++ +++...+.. ++|+ |..+ .+..|+.++ .+ + ..
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence 45778889888655554 458888888 554433221 2443 4433 355677777 56 6 44
Q ss_pred EEeeccCCc----------cccccccEEEcCCCc-EEEEeCCCCCCCccce---------------ecc-cccCCccEEE
Q 018144 138 NFLSYVNGS----------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYC---------------LDI-LEGKPHGQLL 190 (360)
Q Consensus 138 ~l~~~~~~~----------~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~---------------~~~-~~~~~~g~l~ 190 (360)
.+....... .+..+.++++++||+ |+++.... -....+. +.. -.......|+
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 332111110 012257899999996 54442100 0000000 000 0011346799
Q ss_pred EEcCCCCeEEEEeCC---CcCcceEEEecCCCEEEEEeCCC----CEEEEEEecCCcCcceeeec-cCCCC---CCceeE
Q 018144 191 KYDPSSNITTLVADG---FYFANGVALSRDEDYVVVCESWK----FRCRKYWLKGERKGKLETFA-ENLPG---APDNIN 259 (360)
Q Consensus 191 ~~d~~tg~~~~~~~~---l~~pngia~~~dg~~l~v~~t~~----~~i~~~~~~g~~~~~~~~~~-~~~~g---~pd~i~ 259 (360)
.+|.++++...+... ...+..++++|||+.++++.... ..|+.++.++.+ ....+. ..... ....+.
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCCE
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCce
Confidence 999988887655422 23456899999999888765432 378888876431 111111 11111 135678
Q ss_pred EcC--CCCEEE
Q 018144 260 LAP--DGTFWI 268 (360)
Q Consensus 260 ~d~--~G~lwv 268 (360)
+.+ +|.+.+
T Consensus 317 ~sp~~dg~~l~ 327 (706)
T 2z3z_A 317 FLPGSNNQFIW 327 (706)
T ss_dssp ECTTCSSEEEE
T ss_pred eecCCCCEEEE
Confidence 888 887433
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0002 Score=66.14 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=92.6
Q ss_pred cceEEEcCCCCEEEEe-c------CCeEEEEE--CCe---------------eeEEE-ecCCeEEEEeCCCcEEEEc-CC
Q 018144 81 PEDASMDKNGVIYTAT-R------DGWIKRLQ--DGT---------------WVNWK-FIDSHLIICDNANGLHKVS-ED 134 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~------~G~I~~~~--~g~---------------~~~~~-~~~g~L~v~~~~~gl~~~~-~~ 134 (360)
-.++++.+||.+.++. . +|.|..++ ++. +..+. .+++++.++..++.+..++ .+
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE 124 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence 4578888899877665 3 56677665 331 11122 2456777776554444445 33
Q ss_pred C--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcce
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANG 211 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~png 211 (360)
+ .........+. -..++.+++.++|+..++ +...+.|..+|..+++....... ....+.
T Consensus 125 ~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~s-----------------gs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 125 KESLLVNKFAKYEH-DDIVKTLSVFSDGTQAVS-----------------GGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp ----CCCCEEECCC-SSCEEEEEECSSSSEEEE-----------------EETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred cceeEEEeeccCCC-CCCEEEEEECCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 3 11110001111 134778999999987775 23356788899888876554433 345678
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEE
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWI 268 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwv 268 (360)
++++++++.++++....+.|..+++...+......+. .....+..+++.+++ ++.+
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEE
Confidence 9999988656666555667888877533211111111 122234556676654 4443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0017 Score=58.80 Aligned_cols=234 Identities=14% Similarity=0.064 Sum_probs=122.9
Q ss_pred CCcceEEEcCCCCE-EEEecCCeEEEEE--CCeeeE-E---------Ee-cCC-eEEEEeCC-----CcEEEEc-CCC--
Q 018144 79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTWVN-W---------KF-IDS-HLIICDNA-----NGLHKVS-EDG-- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l-~v~~~~G~I~~~~--~g~~~~-~---------~~-~~g-~L~v~~~~-----~gl~~~~-~~g-- 135 (360)
..-.++++.++|.. ++++.+|.|..++ +++... + .. +++ .|+++... ..+..++ ..+
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 34567888887754 4555889898888 443221 1 11 233 34444433 3444454 211
Q ss_pred eEEEeecc--C------CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeEEEE-eCC
Q 018144 136 VENFLSYV--N------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV-ADG 205 (360)
Q Consensus 136 ~~~l~~~~--~------~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~~~~-~~~ 205 (360)
...+.... . ......+..++++++|+..++ +...|.|..+|..+ ++.... ...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA-----------------GHKDGKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE-----------------EETTSEEEEEETTTTTEEEEEEECC
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE-----------------EcCCCEEEEEECCCCcEeEEEEecC
Confidence 11111000 0 000115677888888876554 23357899999876 444332 223
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch-hHHHHhhcc
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSS 284 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~-~~~~~~~~~ 284 (360)
......++++++++.++.+.. .+.|..+++...+ ....+. .......+.++++|.+.+....... ......
T Consensus 218 ~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--- 289 (369)
T 3zwl_B 218 EKSISDMQFSPDLTYFITSSR-DTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS--- 289 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred CCceeEEEECCCCCEEEEecC-CceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEe---
Confidence 445678999999987766654 5688889875422 122222 2233567888888875554333110 000000
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.......+..++. .++.+..+....+ .++.+... ++++.+..-....|..+++
T Consensus 290 ------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 290 ------------------ANEGKFEARFYHKIFEEEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp -----------------------CEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ------------------cCCCcceeEEEecCCCcchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 0001114555564 5666666654433 46677765 4554444445667776654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.001 Score=61.51 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=125.7
Q ss_pred CcceEEEcCCCCE-EEEecCCeEEEEE-CCeee-----------EEEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEee
Q 018144 80 HPEDASMDKNGVI-YTATRDGWIKRLQ-DGTWV-----------NWKF-IDS-HLIICDNANGLHKVS-EDG--VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l-~v~~~~G~I~~~~-~g~~~-----------~~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~~ 141 (360)
...++++.++|.+ .+++.+|.|..++ +++.. .+.. +++ .|+.++.++.+..++ .++ ...+..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 4567888888764 5566888888888 55322 1222 233 466666556677777 566 333321
Q ss_pred ccCCc----------cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcc
Q 018144 142 YVNGS----------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFAN 210 (360)
Q Consensus 142 ~~~~~----------~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pn 210 (360)
..... ....+..+.+.+++.++++ ...|.|..+|..+++...... ......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~i~~~d~~~~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP------------------GPKGAIFVYQITEKTPTGKLIGHHGPIS 251 (425)
T ss_dssp C---------------CCCBSCCEEEETTEEEEE------------------CGGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCCEEEEE------------------cCCCeEEEEEcCCCceeeeeccCCCceE
Confidence 11000 0011667778787776663 235788999987665433322 234467
Q ss_pred eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 211 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 211 gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
.++++++++.++.+.. .+.|..+++...+ ....+. ........+.+.++| +.++...
T Consensus 252 ~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~------------------ 308 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASD-DGTLRIWHGGNGN--SQNCFY-GHSQSIVSASWVGDD-KVISCSM------------------ 308 (425)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEECSSSBS--CSEEEC-CCSSCEEEEEEETTT-EEEEEET------------------
T ss_pred EEEECCCCCEEEEEcC-CCEEEEEECCCCc--cceEec-CCCccEEEEEECCCC-EEEEEeC------------------
Confidence 8999999986666654 5678888875422 122221 223345678888888 4443333
Q ss_pred HHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CC-EEEEEeCCCCeEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~Lylgs~~~~~i~~~~l 359 (360)
.+.|..++. +++.+..+....+ .++.+... ++ .|+.++ ....|..+++
T Consensus 309 ----------------d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~-~dg~i~i~~~ 359 (425)
T 1r5m_A 309 ----------------DGSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAF-MDGQVNVYDL 359 (425)
T ss_dssp ----------------TSEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEE-TTSCEEEEEC
T ss_pred ----------------CCcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEE-CCCeEEEEEC
Confidence 257777774 5677766664333 46666665 34 455544 4556766654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00085 Score=58.58 Aligned_cols=165 Identities=14% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--C-CeeeEEE-------------ecCC-eEEEEeC----CCcEEEEc-CCC-
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--D-GTWVNWK-------------FIDS-HLIICDN----ANGLHKVS-EDG- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~-g~~~~~~-------------~~~g-~L~v~~~----~~gl~~~~-~~g- 135 (360)
....++++.++|..++...++.|+.++ + ++...+. .++| .|+++.. ...++.++ .++
T Consensus 42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 456788999999876666688999999 5 5433221 1233 3444442 23566666 444
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 214 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~ 214 (360)
.+.+... ..++.+++.++|+ |+++... ...-.|+.++..+++...+.........+++
T Consensus 122 ~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (297)
T 2ojh_A 122 PRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDY 180 (297)
T ss_dssp CEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEEE
T ss_pred eEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccceE
Confidence 4333211 1256678899996 5544211 1122688888877777665554556788999
Q ss_pred ecCCCEEEEEeC--CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 215 SRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 215 ~~dg~~l~v~~t--~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
++||+.++++.. ...+|+.++.++.. ...+. ........+.++++|+..+
T Consensus 181 s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 181 SPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERIT-DSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSC---EEECC-CCSEEEEEEEECTTSSEEE
T ss_pred CCCCCEEEEEecCCCCccEEEECCCCCC---cEEEe-cCCcccCCeEECCCCCEEE
Confidence 999998877753 34567777654432 22221 1122244577899997443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00028 Score=64.73 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=86.0
Q ss_pred EEEEEcCCCCeEEEEe-------CCCcCcceEEE--ecC-CC-EEEEEeCCCCEEEEEEecCC---cCc--ceeeeccCC
Q 018144 188 QLLKYDPSSNITTLVA-------DGFYFANGVAL--SRD-ED-YVVVCESWKFRCRKYWLKGE---RKG--KLETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~-------~~l~~pngia~--~~d-g~-~l~v~~t~~~~i~~~~~~g~---~~~--~~~~~~~~~ 251 (360)
.+|.+||++++++.+. +.+..|.|+|+ +++ ++ ++|+++.. +++..|++... +.. ....| .+
T Consensus 102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f--~l 178 (355)
T 3amr_A 102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAF--KM 178 (355)
T ss_dssp EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEE--EC
T ss_pred EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEe--cC
Confidence 4567798888877662 34578999999 664 43 57777765 68888776321 111 11222 24
Q ss_pred CCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--C----CcEEEEEe
Q 018144 252 PGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--D----GTIIRNLV 324 (360)
Q Consensus 252 ~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~----g~~~~~~~ 324 (360)
++-|.++++|+ .|.|||+... .+|++|+. + ++++..+.
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd-----------------------------------~GIw~~da~p~~~~~~~~v~~~~ 223 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRAD 223 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEECSTTSCSCCEEEEEBS
T ss_pred CCCcceEEEcCCCCeEEEeccc-----------------------------------ceEEEEeCCcCCCCCceEEEEec
Confidence 55688999985 6799999876 36999984 3 33444332
Q ss_pred CCCCCcccceeeEEEE--C---CEEEEEeCCCCeEEEEeC
Q 018144 325 DPTGQLMSFVTSGLQV--D---NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 325 ~~~g~~~~~~t~~~~~--~---g~Lylgs~~~~~i~~~~l 359 (360)
.+.....+.++... . |+|++++-.++.+.+++.
T Consensus 224 --~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 224 --GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp --SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred --CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 23223356666553 2 579999999999999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0034 Score=58.40 Aligned_cols=166 Identities=10% Similarity=0.062 Sum_probs=102.2
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCee-e----------EEEecCCeEEEEeCCCcEEEEc-C-CC--eEEEee
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-V----------NWKFIDSHLIICDNANGLHKVS-E-DG--VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-~----------~~~~~~g~L~v~~~~~gl~~~~-~-~g--~~~l~~ 141 (360)
...++++.++|. |.+++.+|.|..++ +++. . .+...+..|+.++.++.+..++ . .+ ...+.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 214 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ- 214 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc-
Confidence 356788888775 45566888888888 4432 1 1223344456666555566666 4 23 22221
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~ 220 (360)
... ..+..+++.++|.+.++ +...+.|..+|..+++..... ........+++++++..
T Consensus 215 ~~~----~~v~~~~~~~~~~~l~s-----------------~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 215 GHS----SEVCGLAWRSDGLQLAS-----------------GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp CCS----SCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT
T ss_pred CCC----CCeeEEEEcCCCCEEEE-----------------EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC
Confidence 111 24678899999987665 223567888998776654433 33445689999998876
Q ss_pred EEEEeC--CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 221 VVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 221 l~v~~t--~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++++.. ..+.|..+++...+ ....+. .......+++.++|...++..
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATGA--RVNTVD--AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEecCCCCCEEEEEECCCCC--EEEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence 777754 46788888875432 122221 223466788899998776654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0051 Score=57.15 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=117.5
Q ss_pred ceEEEcCCCCEE-EEecCCeEEEEE--CCeeeE-----------EEe-cCC-eEEEEeCCCcEEEEc-CCC-eEEEeecc
Q 018144 82 EDASMDKNGVIY-TATRDGWIKRLQ--DGTWVN-----------WKF-IDS-HLIICDNANGLHKVS-EDG-VENFLSYV 143 (360)
Q Consensus 82 e~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~~-----------~~~-~~g-~L~v~~~~~gl~~~~-~~g-~~~l~~~~ 143 (360)
.++++.++|... +++.+|.|..++ +++... +.. +++ .|+.+..++-+..++ .++ .......
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~- 205 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI- 205 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-
Confidence 478888888654 455889888888 443221 111 233 455555444555566 556 2221111
Q ss_pred CCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--------CCcCcceEEE
Q 018144 144 NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------GFYFANGVAL 214 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--------~l~~pngia~ 214 (360)
. ..+..+++.+ +|++.++- ...+.|..+|..+++...... .......+++
T Consensus 206 ~----~~v~~~~~~~~~~~~l~~~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 206 E----DGVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp S----SCEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred C----CCcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 1 2355677887 77776652 235678888887776543221 1224578999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcC---------cceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERK---------GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~---------~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~ 285 (360)
++|++.++.+. ..+.|..+++..... +...............+++.++|.+.++...
T Consensus 265 ~~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------------- 330 (393)
T 1erj_A 265 TRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------------- 330 (393)
T ss_dssp CTTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------
T ss_pred CCCCCEEEEEe-CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-------------
Confidence 99998665554 457788888753211 0011000111223345667777765554433
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-------CCEEEEEeCCCCeEEEE
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKV 357 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-------~g~Lylgs~~~~~i~~~ 357 (360)
.+.|..+|. .|+.+..+....+ .+.++... ++.+++.+-....|..+
T Consensus 331 ---------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 331 ---------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp ---------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred ---------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 256777774 5777776654332 35555543 24555555555566555
Q ss_pred e
Q 018144 358 Q 358 (360)
Q Consensus 358 ~ 358 (360)
+
T Consensus 386 ~ 386 (393)
T 1erj_A 386 K 386 (393)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.7e-05 Score=71.63 Aligned_cols=98 Identities=4% Similarity=-0.131 Sum_probs=67.1
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC---------CCCE
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES---------WKFR 230 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t---------~~~~ 230 (360)
.++|+++...+ .... .|..||++++++.........| ++++++|++.+||+++ ..+.
T Consensus 32 ~~~yV~~~~~~------------~~~d-~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 32 RRSHITLPAYF------------AGTT-ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp TEEEEEECTTT------------CSSE-EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CeEEEECCccC------------Cccc-eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCE
Confidence 57999986511 0011 7999999998886544444568 9999999999999984 2467
Q ss_pred EEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCC-CEEEEEec
Q 018144 231 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G-~lwva~~~ 272 (360)
|..||+...+.. .++-.... ...|.++++++|| .+||+...
T Consensus 98 VsviD~~T~~vv-~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~ 144 (368)
T 1mda_H 98 VEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG 144 (368)
T ss_dssp EEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred EEEEECCCCCEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEccC
Confidence 999998643221 11111100 1259999999999 69998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0012 Score=61.51 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=84.6
Q ss_pred cceEEEcCCC-CEEEEecCCeEEEEE-C-Ce---------eeE--EEecCC-eEEEEeCCCcEEEEc-CCC-eEEEeecc
Q 018144 81 PEDASMDKNG-VIYTATRDGWIKRLQ-D-GT---------WVN--WKFIDS-HLIICDNANGLHKVS-EDG-VENFLSYV 143 (360)
Q Consensus 81 Pe~i~~d~~G-~l~v~~~~G~I~~~~-~-g~---------~~~--~~~~~g-~L~v~~~~~gl~~~~-~~g-~~~l~~~~ 143 (360)
..+++++++| .|++++.+|.|+.++ . ++ ... +...++ .|.+++.++.+..++ .++ ........
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 4477888765 577777899999888 3 21 111 112344 455555555566667 555 32221111
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~ 222 (360)
. ..+..+++.++|.+.++ +...+.|..+|..+++... +.........++++++++.++
T Consensus 139 ~----~~v~~~~~~~~~~~l~s-----------------~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 139 V----SEITKLKFFPSGEALIS-----------------SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp S----SCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred c----CccEEEEECCCCCEEEE-----------------EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 1 35788999999986664 2345788899987665433 332344567899999998666
Q ss_pred EEeCCCCEEEEEEecC
Q 018144 223 VCESWKFRCRKYWLKG 238 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g 238 (360)
.+.. .+.|..+++..
T Consensus 198 s~~~-d~~v~iwd~~~ 212 (420)
T 3vl1_A 198 SASL-DGTIRLWECGT 212 (420)
T ss_dssp EEET-TSCEEEEETTT
T ss_pred EEcC-CCcEEEeECCC
Confidence 5554 56788888753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0026 Score=58.60 Aligned_cols=156 Identities=12% Similarity=-0.019 Sum_probs=97.0
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-------CcCcceEEEecCCCEE
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYV 221 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-------l~~pngia~~~dg~~l 221 (360)
..+..+++.++| +.++ +...|.|..+|..+++....... ......++++++++.+
T Consensus 187 ~~i~~~~~~~~~-~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 187 QFATSVDISERG-LIAT-----------------GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp CCCCEEEECTTS-EEEE-----------------ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred CCceEEEECCCc-eEEE-----------------EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 357889999999 5554 33467899999887766544333 4456789999999866
Q ss_pred EEEeCCC---CEEEEEEecCCcCcceeeeccC------------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchh
Q 018144 222 VVCESWK---FRCRKYWLKGERKGKLETFAEN------------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL 286 (360)
Q Consensus 222 ~v~~t~~---~~i~~~~~~g~~~~~~~~~~~~------------~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~ 286 (360)
+++.. . +.|..|++...+ ....+... .......+.++++|++.++...
T Consensus 249 ~~~~~-d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------- 311 (397)
T 1sq9_A 249 AIAHD-SNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-------------- 311 (397)
T ss_dssp EEEEE-ETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--------------
T ss_pred EEEec-CCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC--------------
Confidence 65553 4 578888875321 12222210 2233567888999986665443
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEe------CC-----CCCc------ccceeeEEEEC-C-----
Q 018144 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLV------DP-----TGQL------MSFVTSGLQVD-N----- 342 (360)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~------~~-----~g~~------~~~~t~~~~~~-g----- 342 (360)
.+.|..++. +++.+..+. .. .|.. ...++.+.... +
T Consensus 312 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 312 --------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp --------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred --------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 256777774 577777776 21 0000 23577777764 4
Q ss_pred -----EEEEEeCCCCeEEEEeC
Q 018144 343 -----HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 343 -----~Lylgs~~~~~i~~~~l 359 (360)
++++..-....|..+++
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEE
T ss_pred cccccceEEEecCCCcEEEEEc
Confidence 45555556777777765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00061 Score=63.10 Aligned_cols=166 Identities=11% Similarity=0.065 Sum_probs=98.8
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCeeeE-E-------------------------E-ecCCeEEEEeCCCcE
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVN-W-------------------------K-FIDSHLIICDNANGL 128 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~~-~-------------------------~-~~~g~L~v~~~~~gl 128 (360)
....++++.++|. |++++.+|.|..++ +++... + . ..++.++++...+.+
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 4556788888776 55666889898888 443211 1 0 124556666555556
Q ss_pred EEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-
Q 018144 129 HKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD- 204 (360)
Q Consensus 129 ~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~- 204 (360)
..++ .++ ...+. ... ..+..+++.++|...++- ...+.|..+|..+++......
T Consensus 230 ~~~d~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~~ 287 (425)
T 1r5m_A 230 FVYQITEKTPTGKLI-GHH----GPISVLEFNDTNKLLLSA-----------------SDDGTLRIWHGGNGNSQNCFYG 287 (425)
T ss_dssp EEEETTCSSCSEEEC-CCS----SCEEEEEEETTTTEEEEE-----------------ETTSCEEEECSSSBSCSEEECC
T ss_pred EEEEcCCCceeeeec-cCC----CceEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCccceEecC
Confidence 6677 444 33332 111 246788899999766642 235678888877665433322
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.......+++++++ .++.+. ..+.|..+++...+ ....+. ........+.++++|++.++..
T Consensus 288 ~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 288 HSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp CSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEEEEECCCC-EEEEEe-CCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEE
Confidence 33456789999998 455444 56789999875422 112221 2223456788888887555443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0026 Score=58.30 Aligned_cols=169 Identities=11% Similarity=0.100 Sum_probs=95.2
Q ss_pred cceEEEcCCCCEEEEecC-------CeEEEEE---CC--------------eeeEEEe-cCCeEEEEeCCCcEEEEc-CC
Q 018144 81 PEDASMDKNGVIYTATRD-------GWIKRLQ---DG--------------TWVNWKF-IDSHLIICDNANGLHKVS-ED 134 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~-------G~I~~~~---~g--------------~~~~~~~-~~g~L~v~~~~~gl~~~~-~~ 134 (360)
-+++++.+||.+.++..+ +.+..++ .+ .+..+.+ .++.|..+..++-+..++ .+
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDE 112 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECT
T ss_pred EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccC
Confidence 356788889988776643 2333332 11 1122222 356677776555455556 54
Q ss_pred C--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcce
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANG 211 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~png 211 (360)
+ ...+.....+. -..++.+++.++|+..++ +...+.|..+|..+++......+ ....+.
T Consensus 113 ~~~~~~~~~~~~~H-~~~V~~v~~spdg~~l~s-----------------gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 113 NETLIVSKFCKYEH-DDIVSTVSVLSSGTQAVS-----------------GSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp TSSCEEEEEEEECC-SSCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCceeEeeccccCC-CCCEEEEEECCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 4 33322111111 135788999999987775 23356788899888877554443 345678
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCC-CCCceeEEcCC-CCEEEE
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPD-GTFWIA 269 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~-g~pd~i~~d~~-G~lwva 269 (360)
+++++++..++++.+..+.|..+|+...+. ...+..... ..+..+++.++ +++.++
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEE
Confidence 999999865666666667788888754321 111211111 12445666664 455554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0018 Score=60.29 Aligned_cols=213 Identities=13% Similarity=0.066 Sum_probs=118.7
Q ss_pred EEcCCCCE-EEEecCCeEEEEE--CCeee-----------EEEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEeeccCC
Q 018144 85 SMDKNGVI-YTATRDGWIKRLQ--DGTWV-----------NWKF-IDS-HLIICDNANGLHKVS-EDG--VENFLSYVNG 145 (360)
Q Consensus 85 ~~d~~G~l-~v~~~~G~I~~~~--~g~~~-----------~~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~ 145 (360)
++.++|.+ .+++.+|.|..++ +++.. .+.. +++ .|+.+..++.+..++ .++ ...+. ...
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~- 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHR- 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCS-
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCC-
Confidence 44556654 4555888888887 34322 1222 234 355555555566677 555 44442 111
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--------------------
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------------------- 205 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-------------------- 205 (360)
..+..+++.++|...++- ...+.|..+|..+++.......
T Consensus 182 ---~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 182 ---ATVTDIAIIDRGRNVLSA-----------------SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp ---SCEEEEEEETTTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred ---CcEEEEEEcCCCCEEEEE-----------------cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 246788999999866652 2345677788776665443321
Q ss_pred -----CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHH
Q 018144 206 -----FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMK 279 (360)
Q Consensus 206 -----l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~ 279 (360)
......++++++++.++.+. ..+.|..+++...+ ....+.....+....++++++|. +.++...
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------- 311 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE------- 311 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEET-------
T ss_pred eeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeC-------
Confidence 12234466788887665555 45678888875421 11222212233456788899987 4444333
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CC-cEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEE
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DG-TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKV 357 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g-~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~ 357 (360)
.+.|..+|. ++ ..+..+....+ ..++.+...++.+++..-....|..+
T Consensus 312 ---------------------------dg~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 312 ---------------------------NGMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp ---------------------------TSEEEEEETTCTTSCSEEEEESTT---SCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred ---------------------------CCeEEEEEcCCCcCchhhhhccCC---CCceEEEeCCCCEEEEecCCccEEEE
Confidence 256667774 33 33444543222 24566666677766666666666666
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
++
T Consensus 362 ~~ 363 (420)
T 3vl1_A 362 II 363 (420)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0052 Score=54.83 Aligned_cols=137 Identities=10% Similarity=0.090 Sum_probs=82.7
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCee-eEE------------EecCCeEEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNW------------KFIDSHLIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~-~~~------------~~~~g~L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
..-.++++.++|.+. .++.+|.|..++ +++. ..+ ...+..|..+..++.+..++ .++ ...+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 456788899888755 455889888888 4432 111 11223355555555566666 566 3333
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC-eEEEEeCC-CcCcceEEEec-
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG-FYFANGVALSR- 216 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg-~~~~~~~~-l~~pngia~~~- 216 (360)
. ... ..++.+++.+++.+.+| +...+.|..+|..++ .......+ ....+.++++|
T Consensus 94 ~-~h~----~~v~~~~~~~~~~~l~s-----------------gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 94 E-AHP----DYIRSIAVHPTKPYVLS-----------------GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp E-CCS----SCEEEEEECSSSSEEEE-----------------EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred e-CCC----CcEEEEEEcCCCCEEEE-----------------ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 2 111 34778999999987775 233567777886655 33333332 34567899998
Q ss_pred CCCEEEEEeCCCCEEEEEEecC
Q 018144 217 DEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g 238 (360)
++. ++++....+.|..+++..
T Consensus 152 ~~~-~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 152 DPS-TFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp CTT-EEEEEETTSEEEEEETTC
T ss_pred CCC-EEEEEeCCCeEEEEECCC
Confidence 556 445555567888888743
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0012 Score=61.32 Aligned_cols=224 Identities=9% Similarity=0.025 Sum_probs=126.1
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE-CC------eeeE----------EEe-cC-Ce-EEEEeCCCcEEEEc-CCCe-
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ-DG------TWVN----------WKF-ID-SH-LIICDNANGLHKVS-EDGV- 136 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g------~~~~----------~~~-~~-g~-L~v~~~~~gl~~~~-~~g~- 136 (360)
...++++.++|. |.+++.+|.|..++ .. .... +.. ++ ++ |+.+..++.+..++ .++.
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 456788888775 55566889888887 32 1111 111 12 33 44444334455555 3221
Q ss_pred -----EEEeeccCCccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-----
Q 018144 137 -----ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----- 205 (360)
Q Consensus 137 -----~~l~~~~~~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----- 205 (360)
..+...........+..+++.++ +.++++- ...+.|..+|..+++.......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~~~ 211 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA-----------------GSSNFASIWDLKAKKEVIHLSYTSPNS 211 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE-----------------SSSSCEEEEETTTTEEEEEECCCCCSS
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEE-----------------cCCCCEEEEECCCCCcceEEecccccc
Confidence 11111000011235788999998 5777652 2356788899887766544332
Q ss_pred --CcCcceEEEecCCCEEEEEeCCCC---EEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHH
Q 018144 206 --FYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMK 279 (360)
Q Consensus 206 --l~~pngia~~~dg~~l~v~~t~~~---~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~ 279 (360)
....+.+++++++..++++....+ .|..+++..... ....+..........+++.+ +|++.++...
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------- 283 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------- 283 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEES-------
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeC-------
Confidence 345678999999743444444444 788888764211 11111101223456788887 7765555443
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC-C-EEEEEeCCCCeEEE
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD-N-HLYVISLTSNFIGK 356 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~-g-~Lylgs~~~~~i~~ 356 (360)
.+.|..+|. +++.+..+....+ .++.+.... + .+++..-....|..
T Consensus 284 ---------------------------dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 284 ---------------------------DNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp ---------------------------SSEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred ---------------------------CCCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEEE
Confidence 256777784 5777777765433 456666653 4 56666556677777
Q ss_pred EeC
Q 018144 357 VQL 359 (360)
Q Consensus 357 ~~l 359 (360)
+++
T Consensus 333 w~~ 335 (416)
T 2pm9_A 333 QTL 335 (416)
T ss_dssp EES
T ss_pred EEc
Confidence 765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00046 Score=67.86 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred EEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 119 LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
+|++....++..++ .+| .+.+.... ..++++++||+.+++-+. .......|+.+|.++
T Consensus 125 ~~~s~~~~~~~l~d~~~g~~~~l~~~~-------~~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 125 VFTGATEDRVALYALDGGGLRELARLP-------GFGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSS 184 (582)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEES-------SCEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTT
T ss_pred EEEecCCCCceEEEccCCcEEEeecCC-------CceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCC
Confidence 45555455666667 666 55543221 167889999975553211 011125699999988
Q ss_pred CeEEEEeCCCcCcceEEEecCCCEEEEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeE--------EcCCCCEE
Q 018144 197 NITTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNIN--------LAPDGTFW 267 (360)
Q Consensus 197 g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~--------~d~~G~lw 267 (360)
++.+.+.......+.++++|||+.++.++..+ ..|++++.++.+ ...+ ......+.++. +++||.++
T Consensus 185 g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 185 GGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---VEDL-ELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp CCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---EEEC-CCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred CCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---EEEc-cCCCcChhhhhhccccceeEcCCCcEE
Confidence 88887755545568899999999888665533 278899886543 2222 12222234455 89999887
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
++...
T Consensus 261 ~~~~~ 265 (582)
T 3o4h_A 261 VVARR 265 (582)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 76654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00025 Score=66.48 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=111.3
Q ss_pred EcCCCCEEEEecCCeEEEEE-C--C-eeeE------------EE-ec--CCeEEEEeCCC----cEEEEcCCC--eEEEe
Q 018144 86 MDKNGVIYTATRDGWIKRLQ-D--G-TWVN------------WK-FI--DSHLIICDNAN----GLHKVSEDG--VENFL 140 (360)
Q Consensus 86 ~d~~G~l~v~~~~G~I~~~~-~--g-~~~~------------~~-~~--~g~L~v~~~~~----gl~~~~~~g--~~~l~ 140 (360)
.|++|.||+|+..| +++++ + | .++. +. ++ .++||++.... ||++.+..| .+.+.
T Consensus 19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~ 97 (394)
T 3b7f_A 19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEAT 97 (394)
T ss_dssp CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECS
T ss_pred CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECC
Confidence 56688999999765 77766 3 2 3332 12 22 57899987654 688776545 44442
Q ss_pred ec--cCCc-------cccccccEEEcC---CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---
Q 018144 141 SY--VNGS-------KLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--- 205 (360)
Q Consensus 141 ~~--~~~~-------~~~~~n~l~~d~---dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--- 205 (360)
.. .... ....+..|++++ .++||+.. ..++|++.+......+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~------------------~~ggl~~S~DgG~tW~~~~~~~~~ 159 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT------------------SPQGLFRSTDHGASWEPVAGFNDH 159 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE------------------ETTEEEEESSTTSBCEECHHHHTC
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe------------------cCCcEEEEcCCCCCeEECcCccCC
Confidence 21 1111 112344678885 67899942 246799987654455543210
Q ss_pred --------------C--cCcceEEEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-----CC------C-CCc
Q 018144 206 --------------F--YFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LP------G-APD 256 (360)
Q Consensus 206 --------------l--~~pngia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-----~~------g-~pd 256 (360)
. .....|++++ +.+.+|++... +.|++.+-.|.. .+.+... ++ + ...
T Consensus 160 p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~t---W~~~~~~~~~~~~p~~~~~~g~~~~ 235 (394)
T 3b7f_A 160 PMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTD---WKPLNRGCAANFLPDPNVEFGHDPH 235 (394)
T ss_dssp TTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSS---CEECCTTCCCTTSSSSSSSSCBCEE
T ss_pred ccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-CCEEEECCCCCC---ceECCCCccccccCCCccccCccee
Confidence 0 1123677886 33457877543 457776533322 2222111 11 0 123
Q ss_pred eeEEcCC--CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC--CCCCccc
Q 018144 257 NINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD--PTGQLMS 332 (360)
Q Consensus 257 ~i~~d~~--G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~--~~g~~~~ 332 (360)
.|+++++ +.+|++... +|++.+..|+..+.+.. +.+. ..
T Consensus 236 ~i~~~~~~~~~l~vg~~~------------------------------------gl~~s~D~G~tW~~~~~~l~~~~-~~ 278 (394)
T 3b7f_A 236 CVVQHPAAPDILYQQNHC------------------------------------GIYRMDRREGVWKRIGDAMPREV-GD 278 (394)
T ss_dssp EEEECSSSTTEEEEEETT------------------------------------EEEEEETTTTEEECGGGGSCTTT-CS
T ss_pred EEEECCCCCCEEEEEcCC------------------------------------eEEEeCCCCCcceECCCCCCCCC-cc
Confidence 5677875 789998754 68887777776655432 1110 02
Q ss_pred ceeeEEEE---CCEEEEEeC
Q 018144 333 FVTSGLQV---DNHLYVISL 349 (360)
Q Consensus 333 ~~t~~~~~---~g~Lylgs~ 349 (360)
....+..+ .+.||+++.
T Consensus 279 ~~~~i~~~p~~~~~l~~~t~ 298 (394)
T 3b7f_A 279 IGFPIVVHQRDPRTVWVFPM 298 (394)
T ss_dssp CEEEEEECSSCTTCEEEEEC
T ss_pred ceEEEEECCCCCCEEEEEec
Confidence 23345553 478998863
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0064 Score=53.62 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=122.6
Q ss_pred CCcceEEEcCCCCE-EEEecCCeEEEEE--CC---e-----------eeEEEecCCeEEEEeCCCcEEEEcCCC-eEEEe
Q 018144 79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DG---T-----------WVNWKFIDSHLIICDNANGLHKVSEDG-VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l-~v~~~~G~I~~~~--~g---~-----------~~~~~~~~g~L~v~~~~~gl~~~~~~g-~~~l~ 140 (360)
....++++.+++.+ ++++.+|.|..++ +. + +..+...++.|+.+..++.+..++... ...+.
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 139 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQ 139 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecc
Confidence 45667888887764 5556888887776 21 1 122333345555655555455555222 22221
Q ss_pred eccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCC
Q 018144 141 SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE 218 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg 218 (360)
... ..+..+.+.+ ++...++ +...+.|..+|.. .....+.. .......+++++++
T Consensus 140 -~~~----~~v~~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 140 -AHN----ASVWDAKVVSFSENKFLT-----------------ASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDG 196 (313)
T ss_dssp -CCS----SCEEEEEEEETTTTEEEE-----------------EETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETT
T ss_pred -cCC----CceeEEEEccCCCCEEEE-----------------EECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCC
Confidence 111 2345666655 6665554 2235678888843 22222322 34456789999998
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
. ++.+. ..+.|..+++...+ ....+. ...+....++++++|.+..+...
T Consensus 197 ~-~~~~~-~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d-------------------------- 245 (313)
T 3odt_A 197 H-FISCS-NDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGED-------------------------- 245 (313)
T ss_dssp E-EEEEE-TTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETT--------------------------
T ss_pred e-EEEcc-CCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecC--------------------------
Confidence 6 54444 46789999875321 122222 23334667889999976666544
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
+.|..+|. +++....+....+ .++.+... ++++..++ ....|..+++
T Consensus 246 ---------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~-~dg~i~iw~~ 294 (313)
T 3odt_A 246 ---------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGS-SDNLVRIFSQ 294 (313)
T ss_dssp ---------SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEE-TTSCEEEEES
T ss_pred ---------CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEe-CCCcEEEEeC
Confidence 57888884 6788877766543 46667665 46655544 4666777665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0004 Score=64.07 Aligned_cols=140 Identities=9% Similarity=-0.065 Sum_probs=80.0
Q ss_pred eEEEcCCCC-EEEEecCCeEEEEE--CCeeeEEE--------------ecCCeEEEEe----------------------
Q 018144 83 DASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWK--------------FIDSHLIICD---------------------- 123 (360)
Q Consensus 83 ~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~~~~--------------~~~g~L~v~~---------------------- 123 (360)
++++.++|. |+++..++.|++++ +++...+. ..+++++++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 457888874 66676777899998 45433211 2234433321
Q ss_pred -CCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcC-CCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe
Q 018144 124 -NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI 198 (360)
Q Consensus 124 -~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~-dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~ 198 (360)
....|+.++ .+| .+.+.... ..+.++.+++ ||. |.++.... . ......|+.+|.++++
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~-~-----------~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGP-H-----------DLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC-T-----------TTSSCSEEEEETTSCC
T ss_pred CCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecC-C-----------CCCcceEEEEeCCCCc
Confidence 113577777 566 55553221 2356788999 885 43432110 0 0113479999987776
Q ss_pred EEEEeCCC--cCcceEEEecCCCEE-EEEeCCCC---EEEEEEecCC
Q 018144 199 TTLVADGF--YFANGVALSRDEDYV-VVCESWKF---RCRKYWLKGE 239 (360)
Q Consensus 199 ~~~~~~~l--~~pngia~~~dg~~l-~v~~t~~~---~i~~~~~~g~ 239 (360)
.+.+.... ......+++|||+.| |++...+. .|+++++++.
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 66554432 124467899999866 44543322 3889988654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0047 Score=57.82 Aligned_cols=137 Identities=11% Similarity=0.140 Sum_probs=81.9
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCeee-----------EEEe-cCCe-EEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-----------NWKF-IDSH-LIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~-----------~~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
....++++.+++.+. .|+.+|.|..++ +++.. .+.. ++|. |..+..++-+..++ .++ +..+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 345678888887655 445889998888 45322 1221 2343 33444444444455 333 2222
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg 218 (360)
.+. ...+..+++.++|...++ +...+.|..+|..+++.... .......+.+++++|+
T Consensus 189 ----~~h-~~~V~~v~~~p~~~~l~s-----------------~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 189 ----HGH-DHNVSSVSIMPNGDHIVS-----------------ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp ----CCC-SSCEEEEEECSSSSEEEE-----------------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred ----cCC-CCCEEEEEEeCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 111 134678899999987775 33467888899887765433 2223456788999999
Q ss_pred CEEEEEeCCCCEEEEEEecC
Q 018144 219 DYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g 238 (360)
+.++.+. ..+.|..+++..
T Consensus 247 ~~l~s~s-~D~~v~vwd~~~ 265 (410)
T 1vyh_C 247 TLIASCS-NDQTVRVWVVAT 265 (410)
T ss_dssp SEEEEEE-TTSCEEEEETTT
T ss_pred CEEEEEc-CCCeEEEEECCC
Confidence 8555554 456788887653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0015 Score=60.09 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=93.0
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCe---------------eeEEEe-cCCe-EEEEeCCCcEEEEc-CCC--eEE
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGT---------------WVNWKF-IDSH-LIICDNANGLHKVS-EDG--VEN 138 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~---------------~~~~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~ 138 (360)
-.++++.+++.+.+++.+|.|..++ +++ +..+.. ++|+ |..+..++-+..++ .++ ...
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4568888999999988889887766 332 111222 2444 44455445566667 566 333
Q ss_pred EeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC---CCcCcceEEE
Q 018144 139 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVAL 214 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~---~l~~pngia~ 214 (360)
+. .. ...++.+++.+++. ++++- ...+.|..+|..+++...... ....+..+++
T Consensus 177 ~~-~h----~~~v~~v~~s~~~~~~~~s~-----------------~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 177 YN-AH----SSEVNCVAACPGKDTIFLSC-----------------GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp EC-CC----SSCEEEEEECTTCSSCEEEE-----------------ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred Ec-CC----CCCEEEEEEccCCCceeeee-----------------ccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 31 11 13467788887773 55542 235678888887665433221 1234678999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
+|++..++++....+.|..+++...+. ...+. ........+++.++|.-+++
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDS--AQTSA-VHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGG--CEEEC-CCSSCEEEEEECSSSSCCEE
T ss_pred hhcccceEEEeecccceeEEECCCCcE--eEEEe-ccceeEEEEEEcCCCCCEEE
Confidence 998655666655567788888754321 22221 12223456788888754443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0053 Score=57.46 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=123.8
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE--CCe-----------eeEEEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGT-----------WVNWKF-IDS-HLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~-----------~~~~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
.-.++++.++|.+. .++.+|.|..++ +++ +..+.. +++ .|..++.++-+..++ .++ ...+.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 34678888887655 455888887777 332 112222 234 355555555566666 666 33332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecC--
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRD-- 217 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~d-- 217 (360)
. .. ..++.+.+.++|.+.++- ...+.|..+|..+++...... .....+.++++|+
T Consensus 232 ~-h~----~~v~~~~~~~~g~~l~s~-----------------s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 232 G-HR----EWVRMVRPNQDGTLIASC-----------------SNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp C-CS----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred C-CC----ccEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence 1 11 246678888999877762 235678888877776544332 2334567788775
Q ss_pred ------------------CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHH
Q 018144 218 ------------------EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMK 279 (360)
Q Consensus 218 ------------------g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~ 279 (360)
+. ++++.+..+.|..+++.... ....+. ...+....+.++++|.+.++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~------- 358 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD------- 358 (410)
T ss_dssp GGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET-------
T ss_pred ccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEeC-------
Confidence 44 44454556778888875321 112222 22234567888999976555443
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEE
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKV 357 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~ 357 (360)
.+.|..+|. .++.+..+.... ..++++.... +.+.+..-....|.++
T Consensus 359 ---------------------------D~~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 359 ---------------------------DKTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp ---------------------------TTEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred ---------------------------CCeEEEEECCCCceEEEEcCCC----CcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 246777774 566666665433 3577777764 4444444445566665
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
++
T Consensus 408 ~~ 409 (410)
T 1vyh_C 408 EC 409 (410)
T ss_dssp C-
T ss_pred eC
Confidence 54
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.009 Score=60.71 Aligned_cols=169 Identities=11% Similarity=0.102 Sum_probs=97.5
Q ss_pred CCcceEEEcCCCCE-EEEecCCeEEEEE--CCeee-E------------EEecCCeEEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTWV-N------------WKFIDSHLIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l-~v~~~~G~I~~~~--~g~~~-~------------~~~~~g~L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
....++++.++|.. .+++.+|.|..++ +++.. . |...+..|.+++.++.+..++ .++ ...+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 45678899988864 4555888888888 44321 1 111233466666555566667 566 3333
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC-eEEEEe-CCCcCcceEEEec-
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVA-DGFYFANGVALSR- 216 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg-~~~~~~-~~l~~pngia~~~- 216 (360)
. ... ..+..+++.++|...++ +...|.|..+|..++ ...... ........++++|
T Consensus 94 ~-~~~----~~v~~~~~s~~~~~l~~-----------------~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 94 E-AHP----DYIRSIAVHPTKPYVLS-----------------GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp E-CCS----SCEEEEEECSSSSEEEE-----------------EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred e-cCC----CCEEEEEEeCCCCEEEE-----------------EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence 2 111 24678899999975554 223567888887655 333322 2334567899999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC--CCCEEEEEec
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP--DGTFWIAIIK 272 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~--~G~lwva~~~ 272 (360)
+++.++ +.+..+.|..+++..... ...+..........+.+.+ +|.+.++...
T Consensus 152 ~~~~l~-~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 152 DPSTFA-SGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp EEEEEE-EEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCEEE-EEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 666444 444567898888754321 1122212223355677766 7765554433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0024 Score=58.80 Aligned_cols=170 Identities=10% Similarity=0.038 Sum_probs=100.4
Q ss_pred CCcceEEEcCCC--CEEEEecCCeEEEEE--CCeee-------------EEEec--CCe-EEEEeCCCcEEEEc-CCC-e
Q 018144 79 NHPEDASMDKNG--VIYTATRDGWIKRLQ--DGTWV-------------NWKFI--DSH-LIICDNANGLHKVS-EDG-V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G--~l~v~~~~G~I~~~~--~g~~~-------------~~~~~--~g~-L~v~~~~~gl~~~~-~~g-~ 136 (360)
..-.++++.++| .|.+++.+|.|..++ +++.. .+... +++ |+.+..++.+..++ .++ .
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 456678888887 456666899888888 33221 12221 223 44455444455566 444 4
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
..+.... + ....+..+++.++|...++ +...+.|..+|........+.........+++++
T Consensus 154 ~~~~~~~-~-~~~~v~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 154 QVFAKTD-S-WDYWYCCVDVSVSRQMLAT-----------------GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EEEECCC-C-SSCCEEEEEEETTTTEEEE-----------------EETTSEEEEEETTSCEEEEEECSSSCEEEEEECS
T ss_pred EEEeccC-C-CCCCeEEEEECCCCCEEEE-----------------ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECC
Confidence 4442211 1 0134678899999986665 2345788899986444444444445678999999
Q ss_pred CCC-EEEEEeCCCCEEEEEEecCCcC-cce-eeeccCCCCCCceeEEcC-CCCEEEEE
Q 018144 217 DED-YVVVCESWKFRCRKYWLKGERK-GKL-ETFAENLPGAPDNINLAP-DGTFWIAI 270 (360)
Q Consensus 217 dg~-~l~v~~t~~~~i~~~~~~g~~~-~~~-~~~~~~~~g~pd~i~~d~-~G~lwva~ 270 (360)
+++ .++.+. ..+.|..+++...+. ... ..+ ...+....+.+++ +|++.++.
T Consensus 215 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 215 RCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp SCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEE
T ss_pred CCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEE
Confidence 998 454444 467888898864221 111 222 1333466788888 88755543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0096 Score=52.97 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCeee-EE----------Ee-cCC-eEEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-NW----------KF-IDS-HLIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~-~~----------~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
..-.++++.++|.+. +++.+|.|..++ +++.. .+ .. +++ .|+.+..++.+..++ .++ ...+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 455678888887655 455888888888 44321 11 11 233 344555555566677 555 3333
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-C-CCcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-D-GFYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~-~l~~pngia~~~d 217 (360)
.. .. ..+..+++.++|.+.++ +...+.|..+|..+++..... . .......++++++
T Consensus 146 ~~-~~----~~v~~~~~~~~~~~l~~-----------------~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 146 PA-HS----DPVSAVHFNRDGSLIVS-----------------SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp CC-CS----SCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred cC-CC----CcEEEEEEcCCCCEEEE-----------------EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence 11 11 23677889999987665 223567888998776653322 2 2234567899999
Q ss_pred CCEEEEEeCCCCEEEEEEecC
Q 018144 218 EDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g 238 (360)
++.++.+.. .+.|..|++..
T Consensus 204 ~~~l~~~~~-d~~i~iwd~~~ 223 (312)
T 4ery_A 204 GKYILAATL-DNTLKLWDYSK 223 (312)
T ss_dssp SSEEEEEET-TTEEEEEETTT
T ss_pred CCEEEEEcC-CCeEEEEECCC
Confidence 986666554 57888888754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0061 Score=56.02 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=118.6
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCe-------eeEE----------E-ecC----C---e-EEEEeCCCcEEE
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNW----------K-FID----S---H-LIICDNANGLHK 130 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~-------~~~~----------~-~~~----g---~-L~v~~~~~gl~~ 130 (360)
..-.++++++ ..|.+++.+|.|..++ +++ ...+ . ..+ + + |+.+..++.+..
T Consensus 17 ~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 17 ADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred cCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 3456677776 6677777888888887 333 2221 1 123 4 4 444444444555
Q ss_pred Ec-CCC-e--EEEeeccCCcc----ccccccEEEc----CCCcE-EEEeCCCCCCCccceecccccCCccEEEEEcCCC-
Q 018144 131 VS-EDG-V--ENFLSYVNGSK----LRFANDVVEA----SDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS- 196 (360)
Q Consensus 131 ~~-~~g-~--~~l~~~~~~~~----~~~~n~l~~d----~dG~l-~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t- 196 (360)
++ .++ . ........... ...+..+++. ++|.. .++- ...|.|..+|..+
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-----------------DVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-----------------ETTSCEEEEEEESS
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-----------------eCCCcEEEEeCCcc
Confidence 55 333 2 11111111110 1357788898 88876 5542 2245666666544
Q ss_pred -----Ce-EE-----EE-------eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC---C---C
Q 018144 197 -----NI-TT-----LV-------ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN---L---P 252 (360)
Q Consensus 197 -----g~-~~-----~~-------~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~---~---~ 252 (360)
++ +. .+ .........+++++++ .++ +....+.|..|++...+ ....+. . . .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~--~~~~~~-~~~~h~~~~ 233 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGFNNGTVQISELSTLR--PLYNFE-SQHSMINNS 233 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EECTTSEEEEEETTTTE--EEEEEE-CCC---CCC
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE-EEeCCCcEEEEECCCCc--eeEEEe-ccccccccC
Confidence 21 11 22 1123457889999999 454 44556789999875421 122222 1 1 3
Q ss_pred CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCC---
Q 018144 253 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG--- 328 (360)
Q Consensus 253 g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g--- 328 (360)
.....++++++|++.++.... ...+.|..+|. +++.+..+..+.-
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d-------------------------------~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDS-------------------------------NSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEE-------------------------------TTEEEEEEEETTTCCEEEEECBC-----
T ss_pred CccceEEECCCCCEEEEEecC-------------------------------CCCceEEEEECCCCcccceeccCccccc
Confidence 345678889999866654430 00156777774 6777777754100
Q ss_pred ------CcccceeeEEEE-CC-EEEEEeCCCCeEEEEeC
Q 018144 329 ------QLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 329 ------~~~~~~t~~~~~-~g-~Lylgs~~~~~i~~~~l 359 (360)
.....++.+... ++ .|+.++ ....|..+++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 320 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDV 320 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEET
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEc
Confidence 012346666665 34 444444 5666777665
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.014 Score=54.12 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=95.3
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCeee-----------------------------EEEe-cCCe-EEEEeCCC
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-----------------------------NWKF-IDSH-LIICDNAN 126 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~-----------------------------~~~~-~~g~-L~v~~~~~ 126 (360)
.-.++++.++|.+.++..++.+..++ +|+.. .+.. ++|+ |..+..++
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 34678899999876665566666665 44221 1111 2344 44444444
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 204 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~ 204 (360)
-+..++ .++ ......... ..+..+++.++|...++- ...+.|..+|..+++......
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~-----------------s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSG-----------------SGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp CEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCcEEEEEccCC----CCEEEEEEcCCCCEEEEe-----------------cCCCcEEEEECCCCeeEEEEE
Confidence 455566 555 222111111 246788999999876652 235778889988887654433
Q ss_pred CCcCcceEEEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeec------cCCCCCCceeEEcCCCCEEEEEe
Q 018144 205 GFYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA------ENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 205 ~l~~pngia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~------~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.......+++++ +++.+..+. ..+.|..++...... ...+. .........++++++|.+.++..
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 334567788998 787555544 456788888753221 11110 01112345677888887655443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0038 Score=56.26 Aligned_cols=167 Identities=8% Similarity=0.045 Sum_probs=93.0
Q ss_pred CcceEEEcCC----CCEEEEecCCeEEEEE--CCe--eeE----------EE-------ecCC-eEEEEeCCCcEEEEc-
Q 018144 80 HPEDASMDKN----GVIYTATRDGWIKRLQ--DGT--WVN----------WK-------FIDS-HLIICDNANGLHKVS- 132 (360)
Q Consensus 80 ~Pe~i~~d~~----G~l~v~~~~G~I~~~~--~g~--~~~----------~~-------~~~g-~L~v~~~~~gl~~~~- 132 (360)
.-.++++.++ ..|++++.+|.|..++ +++ ... +. ..++ .|+.+..++.+..++
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 4456777776 4567777889888887 332 111 11 0123 344455444566666
Q ss_pred CCC---eEEEeeccCCccccccccEE----EcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC
Q 018144 133 EDG---VENFLSYVNGSKLRFANDVV----EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 205 (360)
Q Consensus 133 ~~g---~~~l~~~~~~~~~~~~n~l~----~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~ 205 (360)
.++ ...+. ...+.....+..++ +.++|++.++ +...+.|..+|..+++.......
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~~~~ 208 (357)
T 3i2n_A 147 RQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCA-----------------GYDNGDIKLFDLRNMALRWETNI 208 (357)
T ss_dssp TSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEE-----------------EETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEE-----------------EccCCeEEEEECccCceeeecCC
Confidence 333 33331 11221112344555 5577876664 23357899999988876544433
Q ss_pred CcCcceEEEec---CCCEEEEEeCCCCEEEEEEecCCcC-cceeeec-cCCCCCCceeEEcCCCC
Q 018144 206 FYFANGVALSR---DEDYVVVCESWKFRCRKYWLKGERK-GKLETFA-ENLPGAPDNINLAPDGT 265 (360)
Q Consensus 206 l~~pngia~~~---dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~-~~~~g~pd~i~~d~~G~ 265 (360)
......+++++ +++.++++. ..+.|..|++...+. ....... .........+.+.++|.
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred CCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence 45678899999 888666665 457888888754321 1111110 12223455677888887
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0033 Score=57.81 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=96.3
Q ss_pred EEcCCCC-EEEEec-CC--eEEEEE--CCeeeE-------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeecc
Q 018144 85 SMDKNGV-IYTATR-DG--WIKRLQ--DGTWVN-------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYV 143 (360)
Q Consensus 85 ~~d~~G~-l~v~~~-~G--~I~~~~--~g~~~~-------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~ 143 (360)
++.+||. |+++.. +| .|+.++ +|+... |...+..|+.+.....++.++ .++ .+.+....
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence 4556765 544443 45 478777 443322 222234577766666788888 666 44443221
Q ss_pred CCccccccccEEEcCCCcEEEEeCCC--CCC-Cccce--ecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec-C
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSS--KYL-PHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-D 217 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~--~~~-~~~~~--~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~-d 217 (360)
.+. ........+++|+..++-... .+. ...+. ...........|+.+|..+++.+.+.......+.++++| |
T Consensus 122 ~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 122 AEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD 199 (388)
T ss_dssp TTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred hhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence 110 001122347888766532100 000 00000 011223345789999999898877765555668899999 9
Q ss_pred CCEEEEEeCC-----CCEEEEEEecCCcCcceeeeccCCCC-CCceeEEcCCCC-E-EEEE
Q 018144 218 EDYVVVCESW-----KFRCRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-F-WIAI 270 (360)
Q Consensus 218 g~~l~v~~t~-----~~~i~~~~~~g~~~~~~~~~~~~~~g-~pd~i~~d~~G~-l-wva~ 270 (360)
|+.++++... ..+|+.++.++... ..+.....+ ......+++||+ | |++.
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccccceECCCCCEEEEEec
Confidence 9877665543 34799998765422 222211111 123457889996 5 4443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0045 Score=62.08 Aligned_cols=133 Identities=13% Similarity=0.177 Sum_probs=74.4
Q ss_pred eEEEEeCCC-----cEEEEc-CCC--eEEEeeccCCccccccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCcc
Q 018144 118 HLIICDNAN-----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHG 187 (360)
Q Consensus 118 ~L~v~~~~~-----gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g 187 (360)
.|+++.... .++.++ .+| .+.+............+.+++.+ ||.+.++-.. ....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~---------------~g~~ 335 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------------DGWN 335 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT---------------TSSC
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc---------------CCcc
Confidence 366654332 466677 555 33332221111111246788998 9975443211 1234
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcce-EEEecCCCEEEEEeCCCC----EEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 188 QLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWKF----RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~png-ia~~~dg~~l~v~~t~~~----~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
.|+.+|.+++..+.+..+...... +++++||+.+|++....+ .|++++.++.. .+.+. .......+.+++
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~--~~~~~~~~~~sp 410 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT--PESGMHRTQLSP 410 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC--CSSSEEEEEECT
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc--CCCceEEEEECC
Confidence 789998765655555433323334 789999998988877654 78888876532 22221 112244677788
Q ss_pred CCCEEEEE
Q 018144 263 DGTFWIAI 270 (360)
Q Consensus 263 ~G~lwva~ 270 (360)
+|+.++..
T Consensus 411 dg~~l~~~ 418 (706)
T 2z3z_A 411 DGSAIIDI 418 (706)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 88755543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0019 Score=65.19 Aligned_cols=186 Identities=12% Similarity=0.024 Sum_probs=97.6
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CC---eeeE----------EE-ecCCe-EEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DG---TWVN----------WK-FIDSH-LIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g---~~~~----------~~-~~~g~-L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
..++++.+||...+...++.|+.++ ++ +... .. .++|+ |..+. .+.|+.++ .++ ...+..
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 4678899998754444348899998 44 3221 11 13454 44433 45688888 556 444322
Q ss_pred ccCCc------------cccccccEEEcCCCc-EEEEeCC-CCCCC-------------ccceecc-cccCCccEEEEEc
Q 018144 142 YVNGS------------KLRFANDVVEASDGS-LYFTVSS-SKYLP-------------HEYCLDI-LEGKPHGQLLKYD 193 (360)
Q Consensus 142 ~~~~~------------~~~~~n~l~~d~dG~-l~vtd~~-~~~~~-------------~~~~~~~-~~~~~~g~l~~~d 193 (360)
..... .+..+.++++++||+ |+++... ..... ....+.. -+......|+.+|
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 11110 011257899999995 6665321 00000 0000000 0001122788899
Q ss_pred CCC-CeEEEEeC---CCcCcceEEEecCCCEEEEEeC----CCCEEEEEEecCCcCcceeeeccCCCC---CCceeEEcC
Q 018144 194 PSS-NITTLVAD---GFYFANGVALSRDEDYVVVCES----WKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAP 262 (360)
Q Consensus 194 ~~t-g~~~~~~~---~l~~pngia~~~dg~~l~v~~t----~~~~i~~~~~~g~~~~~~~~~~~~~~g---~pd~i~~d~ 262 (360)
.++ ++...+.. .......+++ +||+.|+++.. ....|+.++.++.+. ...+.....+ ....+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCCEECT
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCceEECC
Confidence 888 77665532 2234578899 99998887653 234678888764322 1122111111 234688888
Q ss_pred CCCEEEEE
Q 018144 263 DGTFWIAI 270 (360)
Q Consensus 263 ~G~lwva~ 270 (360)
||++++..
T Consensus 347 dg~~~~~~ 354 (741)
T 2ecf_A 347 DGSILWSS 354 (741)
T ss_dssp TSCEEEEE
T ss_pred CCeEEEEe
Confidence 99854443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0013 Score=64.33 Aligned_cols=109 Identities=7% Similarity=-0.001 Sum_probs=65.9
Q ss_pred CCeEEEEeCCC-cEEEEc-CCC-eEEEeeccCCccccccccEEE-c-CCC-cEEEEeCCCC-CCCccceecccccCCccE
Q 018144 116 DSHLIICDNAN-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVE-A-SDG-SLYFTVSSSK-YLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 116 ~g~L~v~~~~~-gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~-d-~dG-~l~vtd~~~~-~~~~~~~~~~~~~~~~g~ 188 (360)
+..|||++..+ .+.++| .+. ...+.+...+ ..|.++++ . ++| .+|+++...- ...+....+. .....+.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~-~~~~~~~ 176 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED-VANYVNV 176 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC-GGGEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---CCCcceeeeecCCCcEEEEecccccccCCCCccccc-ccccCce
Confidence 34599988764 588888 555 3322221112 34778887 4 666 6888753211 0000000111 1233467
Q ss_pred EEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 189 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 189 l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
+..+|.++.++.....--..|.++++++||+++|++....
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCc
Confidence 8999999887755433223799999999999999998665
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.014 Score=52.65 Aligned_cols=155 Identities=11% Similarity=-0.009 Sum_probs=89.0
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
.+..+++.++|+..++- ...|.|..+|..+++.............++++++++.++++...
T Consensus 76 ~v~~~~~~~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTG-----------------SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp CEEEEEECTTSSEEEEE-----------------ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBT
T ss_pred cEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCcc
Confidence 35677888888766642 23577888998777765544444567889999999977766543
Q ss_pred --CCEEEEEEecCCcC-cceeeec-------cCCCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCC
Q 018144 228 --KFRCRKYWLKGERK-GKLETFA-------ENLPG--APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295 (360)
Q Consensus 228 --~~~i~~~~~~g~~~-~~~~~~~-------~~~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~ 295 (360)
.+.|..++++.... ....... ....+ ....++++++|++.+....
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 195 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK----------------------- 195 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------------------
T ss_pred CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------------------
Confidence 16788888764321 1111100 01111 3456777888875554433
Q ss_pred ccccccccCCCceEEEEECCC--CcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 296 KLFSQFITLGGGAHLIHVAED--GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~~--g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|.. ++.+..+....+ .+..+... ++.+.+..-....|..+++
T Consensus 196 -----------dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 196 -----------DGKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp -----------TSEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred -----------CCEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 2466666653 456666654332 35555554 3333333334455666554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0087 Score=58.95 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=29.1
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
+.|..+|. +|+++..+..+.+.. ..+ .+...+|++|++...+
T Consensus 485 g~l~a~D~~tG~~lw~~~~~~~~~-~~p-~~~~~~G~~yv~~~~G 527 (571)
T 2ad6_A 485 GYLKALDNKDGKELWNFKMPSGGI-GSP-MTYSFKGKQYIGSMYG 527 (571)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCC-SCC-EEEEETTEEEEEEEEC
T ss_pred CeEEEEECCCCCEEEEEeCCCCcE-eee-EEEEECCEEEEEEECC
Confidence 68999995 799999988766531 112 2234689999987643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.012 Score=53.26 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=93.3
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE-C-Cee-------------eEEEe--c--CCeEEEEeCCCcEEEEc-CCC-e
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ-D-GTW-------------VNWKF--I--DSHLIICDNANGLHKVS-EDG-V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~-~-g~~-------------~~~~~--~--~g~L~v~~~~~gl~~~~-~~g-~ 136 (360)
..-.++++.++|... +++.+|.|..++ . +.. ..+.. . +..|+.++.+.-+..++ .++ .
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 345577888887644 455788777776 2 221 11222 1 33455555444455566 455 3
Q ss_pred EEEeeccCCccccccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE---EEEeCCCcCcce
Q 018144 137 ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVADGFYFANG 211 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~---~~~~~~l~~png 211 (360)
..+.... +. ...+..+++.++ |.+.++ +...+.|..+|..++.. ..+.........
T Consensus 92 ~~~~~~~-~~-~~~v~~~~~~~~~~~~~l~~-----------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 92 SQIAVHA-VH-SASVNSVQWAPHEYGPLLLV-----------------ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp EEEEEEC-CC-SSCEEEEEECCGGGCSEEEE-----------------EETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred eEeeeec-CC-CcceEEEEeCCCCCCCEEEE-----------------ecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence 2322111 11 134678888888 776664 22356788888765521 222223345678
Q ss_pred EEEec-------------CCCEEEEEeCCCCEEEEEEecCCcCc-ceeeeccCCCCCCceeEEcCC---CCEEEEEe
Q 018144 212 VALSR-------------DEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAII 271 (360)
Q Consensus 212 ia~~~-------------dg~~l~v~~t~~~~i~~~~~~g~~~~-~~~~~~~~~~g~pd~i~~d~~---G~lwva~~ 271 (360)
+++++ |++.++.+.. .+.|..|++...... ..........+....+++.++ |++.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp EEECCCC----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred EEEcCccccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 88988 6775655554 567888887643211 111111122234556788888 65555443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.017 Score=52.86 Aligned_cols=214 Identities=12% Similarity=0.102 Sum_probs=118.6
Q ss_pred CcceEEEcCCCCEEEE-ecCCeEEEEE-C-C-----------------eeeEEEe--cCCeEEEEeCCCcEEEEc-CCC-
Q 018144 80 HPEDASMDKNGVIYTA-TRDGWIKRLQ-D-G-----------------TWVNWKF--IDSHLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~-~~~G~I~~~~-~-g-----------------~~~~~~~--~~g~L~v~~~~~gl~~~~-~~g- 135 (360)
...++++.++|...+. ..++.+..++ . + .+..+.. .+..|..++.++-+..++ .++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 3456788888876554 4788777665 2 1 0111111 233456666555565666 555
Q ss_pred -eEEEeeccCCccccccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcce
Q 018144 136 -VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANG 211 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~png 211 (360)
...+.. .. ..+..+.+.+ +|+..++ +...|.|..+|..+++....... ....+.
T Consensus 188 ~~~~~~~-h~----~~v~~~~~~~~~~g~~l~s-----------------gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~ 245 (354)
T 2pbi_B 188 LLQSFHG-HG----ADVLCLDLAPSETGNTFVS-----------------GGCDKKAMVWDMRSGQCVQAFETHESDVNS 245 (354)
T ss_dssp EEEEEEC-CS----SCEEEEEECCCSSCCEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEcC-CC----CCeEEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEecCCCCCeEE
Confidence 333321 11 1244555654 5666664 33467889999887776544333 345688
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
++++|+++.++.+. ..+.|..+++.... ....+... .......+.+.++|.+.++...
T Consensus 246 v~~~p~~~~l~s~s-~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------------------ 304 (354)
T 2pbi_B 246 VRYYPSGDAFASGS-DDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYN------------------ 304 (354)
T ss_dssp EEECTTSSEEEEEE-TTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET------------------
T ss_pred EEEeCCCCEEEEEe-CCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEEC------------------
Confidence 99999998655554 45678888875321 12222211 1112346778899987665544
Q ss_pred HHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEE
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 356 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~ 356 (360)
.+.|..+|. +|+.+..+.... ..++++... +|.+.+..-....|..
T Consensus 305 ----------------d~~i~vwd~~~~~~~~~l~~h~----~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 305 ----------------DYTINVWDVLKGSRVSILFGHE----NRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp ----------------TSCEEEEETTTCSEEEEECCCS----SCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred ----------------CCcEEEEECCCCceEEEEECCC----CcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 245666674 677766665332 356777776 3443333333444443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.013 Score=53.24 Aligned_cols=170 Identities=10% Similarity=0.077 Sum_probs=92.0
Q ss_pred cceEEEcCCCCEEE-EecCCeEEEEE--CCeee--------------EEEe-cCCe-EEEEeCCCcEEEEc-CCC-eEEE
Q 018144 81 PEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWV--------------NWKF-IDSH-LIICDNANGLHKVS-EDG-VENF 139 (360)
Q Consensus 81 Pe~i~~d~~G~l~v-~~~~G~I~~~~--~g~~~--------------~~~~-~~g~-L~v~~~~~gl~~~~-~~g-~~~l 139 (360)
-.++++.++|.+.+ ++.+|.|..++ +++.. .+.. ++|+ |..+..+..+...+ .++ .+.+
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 34788888887554 55788877776 44211 1111 2343 44455444454555 444 3322
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-E---EEeCCCcCcceEEEe
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-T---LVADGFYFANGVALS 215 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-~---~~~~~l~~pngia~~ 215 (360)
.. ..+. ...++.+++.++|++.++- ...+.|..+|..+++. . .+.......+.++++
T Consensus 99 ~~-~~~h-~~~v~~v~~sp~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 99 TT-LEGH-ENEVKSVAWAPSGNLLATC-----------------SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp EE-ECCC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred EE-ccCC-CCCceEEEEeCCCCEEEEE-----------------ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 21 1121 1357789999999877752 2345666676554421 1 122223346789999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
|+++.+..+. ..+.|..++...........+. ...+....++++++|++.++..
T Consensus 160 p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 160 PSQELLASAS-YDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp SSSSCEEEEE-TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEe-CCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEe
Confidence 9998555554 4566777776432111111221 2223355678888887655443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.9e-05 Score=72.97 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=53.9
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEEEE
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVV 223 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v 223 (360)
..+..|++|++|++|+|||+..+..-.... +....++.++.+++.+|++..+..+ -+...|++++||++.||+
T Consensus 473 ~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp TCCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CCccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 346789999999999999986542211111 1122356789999999999887643 345679999999998887
Q ss_pred Ee
Q 018144 224 CE 225 (360)
Q Consensus 224 ~~ 225 (360)
.-
T Consensus 548 ni 549 (592)
T 3zwu_A 548 GI 549 (592)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.02 Score=52.76 Aligned_cols=139 Identities=9% Similarity=-0.021 Sum_probs=77.3
Q ss_pred CCccEEEEEcCC-CCeE-EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC------CCCCC
Q 018144 184 KPHGQLLKYDPS-SNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------LPGAP 255 (360)
Q Consensus 184 ~~~g~l~~~d~~-tg~~-~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~------~~g~p 255 (360)
...+.|..+|.. +++. ..+.......+.++++||++.+ ++.+..+.|..+++.... ....+... .....
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE-EEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSC
T ss_pred ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE-EEEcCCCeEEEEECCCCc--EEEEecccccccccccCce
Confidence 345667777764 2222 2222223456899999999854 555556778888875321 11222110 11124
Q ss_pred ceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccce
Q 018144 256 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFV 334 (360)
Q Consensus 256 d~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~ 334 (360)
..+++.++|.+.++... .+.|..+|. .++....+..........+
T Consensus 302 ~~~~~s~~g~~l~~g~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYS----------------------------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp SEEEECSSSSEEEEECT----------------------------------TSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred EEEEECCCCCEEEEEEC----------------------------------CCCEEEEECCCCceEEEEecccCCCCCce
Confidence 57889999987766544 256777774 5666666532211123456
Q ss_pred eeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 335 TSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 335 t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
+++... +|.+.+..-....|..+++
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEec
Confidence 777765 4544444444556666554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.007 Score=60.93 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=27.9
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL 349 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~ 349 (360)
+.+..+|. +|+++..+..+.+.... + ...+.+|+.|++..
T Consensus 498 g~l~a~D~~tG~~lw~~~~~~~~~~~-p-~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 498 GRLVAYHAATGEKLWEAPTGTGVVAA-P-STYMVDGRQYVSVA 538 (677)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSC-C-EEEEETTEEEEEEE
T ss_pred CcEEEEECCCCceeeeeeCCCCcccC-C-EEEEeCCEEEEEEe
Confidence 68999995 79999999887764222 2 12346888888753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0096 Score=53.98 Aligned_cols=170 Identities=8% Similarity=-0.052 Sum_probs=95.8
Q ss_pred CCcceEEEcCCCCE-EEEecCCeEEEEE--CCeeeE-------------EEe-cCC-eEEEEeCCCcEEEEc-CCC--eE
Q 018144 79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTWVN-------------WKF-IDS-HLIICDNANGLHKVS-EDG--VE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l-~v~~~~G~I~~~~--~g~~~~-------------~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~ 137 (360)
....++++.++|.+ ++++.+|.|..++ +++... +.. +++ .|+++..++.+..++ ..+ ..
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 45567888887765 4555888888887 554221 111 233 455555545455555 332 22
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcC------------------CCCeE
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP------------------SSNIT 199 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~------------------~tg~~ 199 (360)
.......+ ....+..+++.++|...++- ...|.|..+|. .+++.
T Consensus 133 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~-----------------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 133 VCKHIKKP-IRSTVLSLDWHPNSVLLAAG-----------------SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEECTT-CCSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred eeeeeecc-cCCCeeEEEEcCCCCEEEEE-----------------cCCCCEEEEEcccccccccccccccccccchhhh
Confidence 22111111 11357788999999866652 23456777773 23443
Q ss_pred EEEe-CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 200 TLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 200 ~~~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.... ......+.++++++++.++.+. ..+.|..|++...+ ....+. ........++++++|.+.++.
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEE
Confidence 3322 2234567899999998666665 45789999985322 222222 222234667788888766554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0034 Score=58.30 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=102.2
Q ss_pred CCcceEEEcCCC-C-EEEEecCCeEEEEE--CCeee-EE------------Ee-cCC-eEEEEeCCCcEEEEc-CCC--e
Q 018144 79 NHPEDASMDKNG-V-IYTATRDGWIKRLQ--DGTWV-NW------------KF-IDS-HLIICDNANGLHKVS-EDG--V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~-l~v~~~~G~I~~~~--~g~~~-~~------------~~-~~g-~L~v~~~~~gl~~~~-~~g--~ 136 (360)
....++++.++| + |+.++.+|.|..++ +++.. .+ .. +++ .|+.+..++.+..++ .++ .
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 345678888886 3 55666889898888 44322 12 11 133 355555555566677 566 3
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--EEE-eCCCcCcceEE
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLV-ADGFYFANGVA 213 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--~~~-~~~l~~pngia 213 (360)
..+.....+ ..+..+++.++|.+.++-.+ ....+.|..+|..+++. ... .........++
T Consensus 212 ~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 212 AEKDRPHEG---TRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp EEEECSSCS---SSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred eeeccCCCC---CcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 333112111 23677889999987775210 02357888899876542 112 22334567899
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCc--CcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~g~~--~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
+++|++.++++....+.|..|+++..+ ......+. ..+...++++.++|.+.+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCG
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccccce
Confidence 999999888888767789999987543 22222221 223466788888776543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.027 Score=54.84 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=122.7
Q ss_pred cceEEEcC--CCCEE-EEecCCeEEEEE--CC------eeeE---EE----------e-cCCe-EEEEeCCC---cEEEE
Q 018144 81 PEDASMDK--NGVIY-TATRDGWIKRLQ--DG------TWVN---WK----------F-IDSH-LIICDNAN---GLHKV 131 (360)
Q Consensus 81 Pe~i~~d~--~G~l~-v~~~~G~I~~~~--~g------~~~~---~~----------~-~~g~-L~v~~~~~---gl~~~ 131 (360)
..++++.+ +|.+. +++.+|.|..++ ++ +... +. . ++++ |.++.... +.+.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 57889998 88654 555888887777 33 1111 11 1 2333 44444331 22222
Q ss_pred cCCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC-c
Q 018144 132 SEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-Y 207 (360)
Q Consensus 132 ~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l-~ 207 (360)
-..+ ...+. +. ...+..+++.++|. +.++ +...+.|..+|..+++........ .
T Consensus 147 ~d~~~~~~~~~----~~-~~~v~~~~~~~~~~~~l~~-----------------~~~d~~v~vwd~~~~~~~~~~~~~~~ 204 (615)
T 1pgu_A 147 WDSGNSLGEVS----GH-SQRINACHLKQSRPMRSMT-----------------VGDDGSVVFYQGPPFKFSASDRTHHK 204 (615)
T ss_dssp TTTCCEEEECC----SC-SSCEEEEEECSSSSCEEEE-----------------EETTTEEEEEETTTBEEEEEECSSSC
T ss_pred EECCCcceeee----cC-CccEEEEEECCCCCcEEEE-----------------EeCCCcEEEEeCCCcceeeeecccCC
Confidence 2233 22221 11 13467889999986 5554 233578888998777665544332 2
Q ss_pred ---CcceEEEecC-CCEEEEEeCCCCEEEEEEecCCcCcceeeecc---CCCCCCceeEEcCCCCEEEEEecCchhHHHH
Q 018144 208 ---FANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAE---NLPGAPDNINLAPDGTFWIAIIKLDARRMKI 280 (360)
Q Consensus 208 ---~pngia~~~d-g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~ 280 (360)
....++++++ ++.++.+.. .+.|..+++...+ ....+.. ...+....+.+. +|.+.++...
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------- 272 (615)
T 1pgu_A 205 QGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-------- 272 (615)
T ss_dssp TTCCEEEEEECSTTCCEEEEEET-TCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEET--------
T ss_pred CCceEEEEEECCCCCCEEEEEeC-CCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcC--------
Confidence 4678999999 886665554 5678888875322 1222211 222345567888 8876665544
Q ss_pred hhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCCeEEEEe
Q 018144 281 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 281 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|..++. +++.+..+..........+..+.. .++.|..++. ...|..++
T Consensus 273 --------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d 325 (615)
T 1pgu_A 273 --------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYE 325 (615)
T ss_dssp --------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEE
T ss_pred --------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEEE
Confidence 256777775 577777777653322334444444 4466666654 44555554
Q ss_pred C
Q 018144 359 L 359 (360)
Q Consensus 359 l 359 (360)
+
T Consensus 326 ~ 326 (615)
T 1pgu_A 326 L 326 (615)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0015 Score=61.66 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=94.2
Q ss_pred cceEEEcC-CC-CEEEEecCCeEEEEE--CCe-------------eeEEEe--cCCe-EEEEeCCCcEEEEc-CCC-eEE
Q 018144 81 PEDASMDK-NG-VIYTATRDGWIKRLQ--DGT-------------WVNWKF--IDSH-LIICDNANGLHKVS-EDG-VEN 138 (360)
Q Consensus 81 Pe~i~~d~-~G-~l~v~~~~G~I~~~~--~g~-------------~~~~~~--~~g~-L~v~~~~~gl~~~~-~~g-~~~ 138 (360)
-.+|++.+ ++ .|.+|+.+|.|..++ .++ +..+.+ .++. |+.+..++-+..+| +++ .+.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE
Confidence 45788886 44 466778899988887 332 112222 2344 44444344455556 555 544
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
+...... ......++++++|.+.++ +...|.|..+|.++..+..+.......+.++++|++
T Consensus 202 ~~~~~~~--~~~~~~~~~~~~~~~l~~-----------------g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 202 FASSDTI--NIWFCSLDVSASSRMVVT-----------------GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EECCSSC--SCCCCCEEEETTTTEEEE-----------------ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTC
T ss_pred EeccCCC--CccEEEEEECCCCCEEEE-----------------EeCCCcEeeeccCcceeEEEecccceEEeeeecCCC
Confidence 4322111 124567889999987775 334577888887654433332223356789999998
Q ss_pred CEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 219 DYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
+.++++....+.|..+++...+. ...... .........++++++|++.++.
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEE
T ss_pred ceEEEEecCcceeeEEecccccccceEEEe-eeccccccceeECCCCCeeEEE
Confidence 76666655566787888753221 111110 0111223456667777655443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.011 Score=55.90 Aligned_cols=169 Identities=11% Similarity=0.112 Sum_probs=103.4
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCee---------------eEEE-ecC---Ce-EEEEeCCCcEEEEc-CC
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW---------------VNWK-FID---SH-LIICDNANGLHKVS-ED 134 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~---------------~~~~-~~~---g~-L~v~~~~~gl~~~~-~~ 134 (360)
..+.++++.++|. |++++.+|.|+.++ +++. ..+. .++ ++ |+.++.+..+..++ .+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 4567899998875 56667889999887 3321 1111 123 54 44555555566666 55
Q ss_pred C--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-------
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------- 205 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~------- 205 (360)
+ ...+..... ..+..+++. +|.+.++- ...+.|..+|..+++.......
T Consensus 230 ~~~~~~~~~~h~----~~v~~~~~s-d~~~l~s~-----------------~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 287 (450)
T 2vdu_B 230 CFIVDKWLFGHK----HFVSSICCG-KDYLLLSA-----------------GGDDKIFAWDWKTGKNLSTFDYNSLIKPY 287 (450)
T ss_dssp TTCEEEECCCCS----SCEEEEEEC-STTEEEEE-----------------ESSSEEEEEETTTCCEEEEEECHHHHGGG
T ss_pred CceeeeeecCCC----CceEEEEEC-CCCEEEEE-----------------eCCCeEEEEECCCCcEeeeecchhhhhhh
Confidence 5 333221111 356788898 88877752 2357888899887765432210
Q ss_pred -------------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEe--cC-CcCcceeeeccCCCCCCceeEEcCC
Q 018144 206 -------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWL--KG-ERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 206 -------------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~--~g-~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
-....+++++++++.++++....+.|..|++ .. ........+. ..+.+..+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~- 364 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FPYNVISLSAHN- 364 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CSSCEEEEEEET-
T ss_pred hhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cCCceEEEEecC-
Confidence 1234578999999988888756788999988 22 1112222222 224577888888
Q ss_pred CCEEEEEec
Q 018144 264 GTFWIAIIK 272 (360)
Q Consensus 264 G~lwva~~~ 272 (360)
+.+|++...
T Consensus 365 ~~~~v~~~~ 373 (450)
T 2vdu_B 365 DEFQVTLDN 373 (450)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEEec
Confidence 468887655
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.012 Score=57.33 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=117.5
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CC----e------------eeEEEe-c--CCe-EEEEeCCCcEEEEc-CCC
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG----T------------WVNWKF-I--DSH-LIICDNANGLHKVS-EDG 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g----~------------~~~~~~-~--~g~-L~v~~~~~gl~~~~-~~g 135 (360)
..+.+++++++|.+.+...++.|..++ ++ + +..+.. + +++ |..++.++.+..++ .++
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 456778888888765544577777777 44 2 222222 2 333 34444333344444 211
Q ss_pred ------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc
Q 018144 136 ------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 209 (360)
Q Consensus 136 ------~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p 209 (360)
........... ...+..+++.++|+..++-... ....+.|+.+|.. .....+.......
T Consensus 99 ~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~~-~~~~~~~~~~~~v 163 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDSG-NSLGEVSGHSQRI 163 (615)
T ss_dssp GGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTTC-CEEEECCSCSSCE
T ss_pred cccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEECC-CcceeeecCCccE
Confidence 00111111111 1347788999999765542210 0113678888732 3333333334457
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC---CCceeEEcCC-CCEEEEEecCchhHHHHhhcch
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPD-GTFWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g---~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~ 285 (360)
+.++++++++.++++....+.|..++....+ ....+. .... ....+++.++ |++.++...
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~------------- 227 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGS------------- 227 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEET-------------
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeC-------------
Confidence 8899999997455555556788888864321 112222 1222 3456888988 876554433
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEEeC
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+| .+++.+..+..+.......+..+...+ ..|+.++ ....|..+++
T Consensus 228 ---------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~wd~ 281 (615)
T 1pgu_A 228 ---------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV 281 (615)
T ss_dssp ---------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred ---------------------CCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEc-CCCcEEEEEC
Confidence 24566677 457777666220000012355555534 3444444 3455666554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0015 Score=59.86 Aligned_cols=138 Identities=7% Similarity=-0.011 Sum_probs=72.8
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-------------EEEe-cCC-eEEEEeCCCcEEEEc-CCCe--EE
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-------------NWKF-IDS-HLIICDNANGLHKVS-EDGV--EN 138 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-------------~~~~-~~g-~L~v~~~~~gl~~~~-~~g~--~~ 138 (360)
.-.++++.++|.+.+.. .+|.|..++ ++..+ .+.. +++ .|..+..++.+..++ .++. ..
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 34567888888755444 778777666 44211 1111 233 344455444455555 3221 11
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----EEEEeC-CCcCcceEE
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVAD-GFYFANGVA 213 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----~~~~~~-~l~~pngia 213 (360)
... ..+. ...+..+++.++|+..++ +...+.|..+|..+++ ...+.. .....+.++
T Consensus 93 ~~~-~~~~-~~~v~~~~~~~~~~~l~~-----------------~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 93 TLV-LLRL-NRAATFVRWSPNEDKFAV-----------------GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp EEE-CCCC-SSCEEEEECCTTSSCCEE-----------------EESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred eeE-eccc-CCceEEEEECCCCCEEEE-----------------EecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 111 1111 134678888888875554 2234667778876654 333333 344567899
Q ss_pred EecCCCEEEEEeCCCCEEEEEEec
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
++++++.++.+.. .+.|..++++
T Consensus 154 ~~~~~~~l~~~~~-d~~i~iwd~~ 176 (377)
T 3dwl_C 154 WHPNNVLLAAGCA-DRKAYVLSAY 176 (377)
T ss_dssp ECTTSSEEEEEES-SSCEEEEEEC
T ss_pred EcCCCCEEEEEeC-CCEEEEEEEE
Confidence 9999986665554 4678888874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0053 Score=61.88 Aligned_cols=123 Identities=11% Similarity=0.196 Sum_probs=67.8
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 204 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~ 204 (360)
.++.++ .+| .+.+.......-....+.+++.+||+++++... .....|+.+|.+++ ...+..
T Consensus 313 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~---------------~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 313 DLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER---------------TGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT---------------TSSCEEEEECSSSC-EEESCC
T ss_pred EEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC---------------CCccEEEEEcCCCC-eeeeee
Confidence 466677 566 444332211111113457899999986665322 11247999987644 444433
Q ss_pred CCcCcceE-EEecCCCEEEEEeCCC----CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 205 GFYFANGV-ALSRDEDYVVVCESWK----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 205 ~l~~pngi-a~~~dg~~l~v~~t~~----~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
+......+ ++++||+.++++.... .+|++++.++.. .+.+.. .. ....+.++++|+..+..
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~---~~~l~~-~~-~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ---PQRLSK-AP-GMHSASFARNASVYVDS 442 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC---CEECCC-SC-SEEEEEECTTSSEEEEE
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC---eeeccc-CC-CceEEEECCCCCEEEEE
Confidence 33333455 5999999887776543 356666654432 222221 11 23457788999765544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=66.09 Aligned_cols=145 Identities=14% Similarity=0.032 Sum_probs=81.5
Q ss_pred EEEEeC-CCcEEEEc-C--C-C-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 119 LIICDN-ANGLHKVS-E--D-G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 119 L~v~~~-~~gl~~~~-~--~-g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
|..+.. ...|+.++ . . + .+.+.............++++++||+ |+++..... . .........|+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~-~-------~~~~~~~~~i~~ 165 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT-G-------EGPSDVRRFLAA 165 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC-S-------SSTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc-C-------CCCCCceeEEEE
Confidence 444433 24677777 4 2 6 54443211000112456788999996 555421100 0 000012257999
Q ss_pred EcCCC------CeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC-------CEEEEEEecC-CcCcceeeeccCCCCCCc
Q 018144 192 YDPSS------NITTLVA-DGFYFANGVALSRDEDYVVVCESWK-------FRCRKYWLKG-ERKGKLETFAENLPGAPD 256 (360)
Q Consensus 192 ~d~~t------g~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~-------~~i~~~~~~g-~~~~~~~~~~~~~~g~pd 256 (360)
+|.++ ++.+.+. .+......++++|||+.|+++.... ..|+.+++++ ........+.....+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 99987 6776665 5455667889999999887766432 4799999873 322233333222223455
Q ss_pred eeEEcCCCCEEEEEe
Q 018144 257 NINLAPDGTFWIAII 271 (360)
Q Consensus 257 ~i~~d~~G~lwva~~ 271 (360)
.+.+.+||.+++...
T Consensus 246 ~~~~spdg~l~~~~~ 260 (662)
T 3azo_A 246 QAEWAPDGSLIVATD 260 (662)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred ceEECCCCeEEEEEC
Confidence 678889998766554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0057 Score=60.81 Aligned_cols=108 Identities=8% Similarity=-0.022 Sum_probs=60.0
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCC-CC---eEEEEeCC-CcCcceEEEecCCCEEEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN---ITTLVADG-FYFANGVALSRDEDYVVV 223 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg---~~~~~~~~-l~~pngia~~~dg~~l~v 223 (360)
....+++++||+ |+++..... ...| ....|+.+|.+ +| +.+.+..+ ......+++++||+ +|+
T Consensus 189 ~~~~~~~SpDG~~la~~~~~~~--~~~~--------~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~ 257 (662)
T 3azo_A 189 FVTGPRLSPDGRQAVWLAWDHP--RMPW--------EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIV 257 (662)
T ss_dssp EECCCEECTTSSEEEEEEECTT--CCTT--------TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred cccCceECCCCCEEEEEECCCC--CCCC--------CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEE
Confidence 456778999996 555432100 0000 12468888887 56 55555443 34567899999999 555
Q ss_pred EeCCCC--EEEEEEecCCcCcceeeeccCCCC------C--CceeEEcCCCCEEEEEe
Q 018144 224 CESWKF--RCRKYWLKGERKGKLETFAENLPG------A--PDNINLAPDGTFWIAII 271 (360)
Q Consensus 224 ~~t~~~--~i~~~~~~g~~~~~~~~~~~~~~g------~--pd~i~~d~~G~lwva~~ 271 (360)
+....+ +|++++.++.+ .+.+...... . ...+++.++|.+++...
T Consensus 258 ~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp EECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred EECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 544344 78888874432 1111111000 1 23566777788766543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.03 Score=55.13 Aligned_cols=50 Identities=14% Similarity=0.347 Sum_probs=36.4
Q ss_pred EEEcCCCCEEEEecCCeEEEEE--CCeeeEEE-----------------ecCCeEEEEeC------CCcEEEEc-CCC
Q 018144 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK-----------------FIDSHLIICDN------ANGLHKVS-EDG 135 (360)
Q Consensus 84 i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~-----------------~~~g~L~v~~~------~~gl~~~~-~~g 135 (360)
++++ ++.||+++.+|.|+.+| +|+.. |. ..++.+|++.. ...++.+| .+|
T Consensus 111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~-W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 111 LAYG-AGQIVKKQANGHLLALDAKTGKIN-WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CEEE-TTEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred cEEE-CCEEEEEeCCCEEEEEECCCCCEE-EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 3454 77999999999999999 77532 11 12678999875 35688899 788
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0092 Score=54.75 Aligned_cols=136 Identities=12% Similarity=0.051 Sum_probs=82.0
Q ss_pred CcceEEEcC-CC-CEEEEecCCeEEEEE-CC-eeeEEE-------------e-cC-CeEEEEeCCCcEEEEcCCC--eEE
Q 018144 80 HPEDASMDK-NG-VIYTATRDGWIKRLQ-DG-TWVNWK-------------F-ID-SHLIICDNANGLHKVSEDG--VEN 138 (360)
Q Consensus 80 ~Pe~i~~d~-~G-~l~v~~~~G~I~~~~-~g-~~~~~~-------------~-~~-g~L~v~~~~~gl~~~~~~g--~~~ 138 (360)
.-.++++.+ ++ .|++++.+|.|..++ .+ ....+. . ++ ..|+.++.+..+..++-++ ...
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 199 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFK 199 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEE
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE
Confidence 445778877 44 455666889888888 43 222221 1 12 3355555455555566333 433
Q ss_pred EeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCC----CeEEEEeCCCcCcceEE
Q 018144 139 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----NITTLVADGFYFANGVA 213 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t----g~~~~~~~~l~~pngia 213 (360)
+... . ..+..+++.++|. ++++- ...+.|..+|..+ ++.............++
T Consensus 200 ~~~h-~----~~v~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 257 (383)
T 3ei3_B 200 EKLH-K----AKVTHAEFNPRCDWLMATS-----------------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 257 (383)
T ss_dssp EECS-S----SCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE
T ss_pred eccC-C----CcEEEEEECCCCCCEEEEE-----------------eCCCEEEEEeCCCCCcccceEEEecCCCceEEEE
Confidence 3211 1 3577899999997 66652 2356788888765 44433333344678899
Q ss_pred Eec-CCCEEEEEeCCCCEEEEEEecC
Q 018144 214 LSR-DEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 214 ~~~-dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+++ +++.++.+.. .+.|..+++..
T Consensus 258 ~s~~~~~~l~~~~~-d~~i~iwd~~~ 282 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQ-RNEIRVYSSYD 282 (383)
T ss_dssp ECTTTSCEEEEEES-SSEEEEEETTB
T ss_pred EcCCCCCEEEEEcC-CCcEEEEECCC
Confidence 999 9986665554 57899999864
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0028 Score=59.19 Aligned_cols=170 Identities=12% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCcceEEEcC--CCCEEEEecCC----eEEEEE-CCe-ee---------------------E---EEec----CCeEEEE
Q 018144 79 NHPEDASMDK--NGVIYTATRDG----WIKRLQ-DGT-WV---------------------N---WKFI----DSHLIIC 122 (360)
Q Consensus 79 ~~Pe~i~~d~--~G~l~v~~~~G----~I~~~~-~g~-~~---------------------~---~~~~----~g~L~v~ 122 (360)
..-.+|++|+ ++.||+++..| .|++.+ .|+ ++ . +... .++||++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 3467899998 78999999777 899886 331 11 1 2221 5789998
Q ss_pred eCCCcEEEEcCCC--eEEEeecc--C------------CccccccccEEEcC--CCcEEEEeCCCCCCCccceecccccC
Q 018144 123 DNANGLHKVSEDG--VENFLSYV--N------------GSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 123 ~~~~gl~~~~~~g--~~~l~~~~--~------------~~~~~~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
....||++.+..| .+.+.... . +.....+..|++|+ .++||++.
T Consensus 135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~------------------ 196 (394)
T 3b7f_A 135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM------------------ 196 (394)
T ss_dssp EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE------------------
T ss_pred ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE------------------
Confidence 8777888887555 44432110 0 01112345788886 46899953
Q ss_pred CccEEEEEcCCCCeEEEEeCCC-------------cCcceEEEecC-CCEEEEEeCCCCEEEEEEecCCcCcceeeeccC
Q 018144 185 PHGQLLKYDPSSNITTLVADGF-------------YFANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN 250 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l-------------~~pngia~~~d-g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~ 250 (360)
..++|++.+......+.+..++ .....|+++++ .+.+|+... ..|++.+-.|.. .+.+...
T Consensus 197 ~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G~t---W~~~~~~ 271 (394)
T 3b7f_A 197 SSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRREGV---WKRIGDA 271 (394)
T ss_dssp ETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTTTE---EECGGGG
T ss_pred CCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCCCc---ceECCCC
Confidence 2356888876544555443221 12456788875 356888764 468887644432 2222111
Q ss_pred CCC----CCceeEEc--CCCCEEEEEe
Q 018144 251 LPG----APDNINLA--PDGTFWIAII 271 (360)
Q Consensus 251 ~~g----~pd~i~~d--~~G~lwva~~ 271 (360)
++. +...+++| ..+.+|++..
T Consensus 272 l~~~~~~~~~~i~~~p~~~~~l~~~t~ 298 (394)
T 3b7f_A 272 MPREVGDIGFPIVVHQRDPRTVWVFPM 298 (394)
T ss_dssp SCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred CCCCCccceEEEEECCCCCCEEEEEec
Confidence 221 11246677 4678999864
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.024 Score=56.06 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 307 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 307 ~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
.+.+..+|. +|+++..+..+.+.... + .+.+.+|++|++...+
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~g~~~~-P-~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPSGAIGY-P-MTYTHKGTQYVAIYYG 536 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSC-C-EEEEETTEEEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEeeCCCCcEec-c-EEEEeCCEEEEEEEcc
Confidence 468999995 79999999887765222 2 2235789999876543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.029 Score=50.29 Aligned_cols=169 Identities=11% Similarity=0.105 Sum_probs=90.9
Q ss_pred CCcceEEEcCCC-C-EEEEecCCeEEEEE-CC---e----eeEE----------Ee-cCCe-EEEEeCCCcEEEEc-CCC
Q 018144 79 NHPEDASMDKNG-V-IYTATRDGWIKRLQ-DG---T----WVNW----------KF-IDSH-LIICDNANGLHKVS-EDG 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~-l~v~~~~G~I~~~~-~g---~----~~~~----------~~-~~g~-L~v~~~~~gl~~~~-~~g 135 (360)
..-.++++.+++ . |..++.||.|..++ .+ + ...+ .. .+|+ |..+..++-+..++ .++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 345667777643 4 55666888877665 21 1 1111 11 2344 44455445555566 666
Q ss_pred --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEE
Q 018144 136 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 213 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia 213 (360)
...+. ... ..+..++++++|.+.++- ...+.|..+|........+.........++
T Consensus 98 ~~~~~~~-~h~----~~v~~~~~~~~~~~l~s~-----------------s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 98 ETYQRFV-GHK----SDVMSVDIDKKASMIISG-----------------SRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp EEEEEEE-CCS----SCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred CeeEEEc-cCC----CcEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence 33332 111 246788999999877762 235667778876444444433333456677
Q ss_pred EecCCC-----EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 214 LSRDED-----YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 214 ~~~dg~-----~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.+.+. ..+++....+.|..+++...+ ....+. ...+....+++.++|++.++...
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence 776432 144444455678888875321 111221 22233556788899986665443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.024 Score=49.78 Aligned_cols=212 Identities=9% Similarity=0.056 Sum_probs=109.7
Q ss_pred CCcceEEEcCCC-CEEEEecCCeEEEEE--CCeeeE-E----------E-ecCC-eEEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVN-W----------K-FIDS-HLIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~~G~I~~~~--~g~~~~-~----------~-~~~g-~L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
..-.++++ +++ .|.+++.+|.|..++ +++... + . .+++ .|+++..+.-+..++ .+. .+.+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 44556777 544 566677899888888 443221 1 1 1233 344554444344444 211 1111
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-EEeCCCcCcceEEEec-C
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSR-D 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-~~~~~l~~pngia~~~-d 217 (360)
.. ..+. ...+..+.+ +++..++ +...+.|..+|. ++.. .+.........+++.+ +
T Consensus 98 ~~-~~~~-~~~i~~~~~--~~~~l~~-----------------~~~d~~i~~~d~--~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 98 YT-LIGH-QGNVCSLSF--QDGVVIS-----------------GSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp CE-ECCC-SSCEEEEEE--ETTEEEE-----------------EETTSEEEEEET--TEEEEEEECCSSCEEEEEEEETT
T ss_pred cc-hhhc-ccCEEEEEe--cCCEEEE-----------------EeCCCCEEEEcC--CcEEEecccCCCceeEEEEccCC
Confidence 11 0111 123455666 3444443 233567888883 4333 3333344556788877 7
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
++.++.+.. .+.|..++.. .....+..........+.+.++|.+..+...
T Consensus 155 ~~~l~~~~~-d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d------------------------- 204 (313)
T 3odt_A 155 ENKFLTASA-DKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND------------------------- 204 (313)
T ss_dssp TTEEEEEET-TSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT-------------------------
T ss_pred CCEEEEEEC-CCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC-------------------------
Confidence 876665554 5678888732 1222232223344567888888886555544
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 298 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
+.|..+|. +++.+..+....+ .++.+... +++|+.++ ....|..+++
T Consensus 205 ----------g~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~-~dg~v~iwd~ 253 (313)
T 3odt_A 205 ----------GLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCG-EDRTVRIWSK 253 (313)
T ss_dssp ----------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEE-TTSEEEEECT
T ss_pred ----------CeEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEe-cCCEEEEEEC
Confidence 46667774 4677766654333 35666665 35555444 3445555543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.002 Score=54.94 Aligned_cols=147 Identities=15% Similarity=0.050 Sum_probs=90.0
Q ss_pred hhcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CC-------e------------eeEEEecCCeEEEEe
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG-------T------------WVNWKFIDSHLIICD 123 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g-------~------------~~~~~~~~g~L~v~~ 123 (360)
.-+..+.+++.+.+..-.+++++++|.||.. .+|.||+++ ++ . ...+.+.+|.||+.+
T Consensus 27 ~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~ 105 (236)
T 1tl2_A 27 NWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS 105 (236)
T ss_dssp CHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE
T ss_pred chhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC
Confidence 3446778888866788899999999999998 889999998 31 1 112345688999884
Q ss_pred CCCcEEEEc-C-CC-eEEEe--eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC-CC
Q 018144 124 NANGLHKVS-E-DG-VENFL--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN 197 (360)
Q Consensus 124 ~~~gl~~~~-~-~g-~~~l~--~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg 197 (360)
+..|++++ + ++ -..+. +.+..........|.++++|.||..+ .+.+++-.+- +.
T Consensus 106 -dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-------------------dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 106 -KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFYKALPPVSN 165 (236)
T ss_dssp -TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEEEECCCSST
T ss_pred -CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-------------------CCcEEecCCCCCC
Confidence 56688888 3 33 22221 11111112345788999999999964 3456553332 11
Q ss_pred ------eEEEEe-CCCcCcceEEEecCCCEEEEEeCCCCEEEEEE
Q 018144 198 ------ITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYW 235 (360)
Q Consensus 198 ------~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~ 235 (360)
..+.+. .+...-.-+.+++++. ||.++ ++++++..
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~ 207 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDY 207 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEES
T ss_pred CcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecC
Confidence 111122 2222222355788886 66666 56787754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.039 Score=55.30 Aligned_cols=170 Identities=11% Similarity=0.116 Sum_probs=92.9
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE--CCeee-EE----------Ee-cCC-eEEEEeCCCcEEEEcC-CC-eEEEee
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-NW----------KF-IDS-HLIICDNANGLHKVSE-DG-VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~-~~----------~~-~~g-~L~v~~~~~gl~~~~~-~g-~~~l~~ 141 (360)
.-.++++.++|.+. .++.+|.|..++ +++.. .+ .. +++ .|..++.++.+..++. .. ...+..
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 34567788877654 455788888777 44321 11 11 223 3444444444444552 22 222211
Q ss_pred ccCCccccccccEEEcCCC--cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCC
Q 018144 142 YVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 218 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG--~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg 218 (360)
...+. ...+..+++.+++ ...++ +...+.|..+|..+++......+ ....+.+++++|+
T Consensus 512 ~~~~h-~~~v~~~~~~~~~~~~~l~s-----------------~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 573 (694)
T 3dm0_A 512 GGEGH-RDWVSCVRFSPNTLQPTIVS-----------------ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573 (694)
T ss_dssp STTSC-SSCEEEEEECSCSSSCEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCC-CCcEEEEEEeCCCCcceEEE-----------------EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC
Confidence 11111 1245677777766 34443 23356788888877766544433 3456789999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.+..+. ..+.|..+++...+ ....-........+++.++|.+.++...
T Consensus 574 ~~l~sg~-~Dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 622 (694)
T 3dm0_A 574 SLCASGG-KDGVVLLWDLAEGK----KLYSLEANSVIHALCFSPNRYWLCAATE 622 (694)
T ss_dssp SEEEEEE-TTSBCEEEETTTTE----EEECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred CEEEEEe-CCCeEEEEECCCCc----eEEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence 8555444 45678888875321 1111112234566888888876665544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.024 Score=52.40 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=98.3
Q ss_pred CCcceEEEcC-CCCEE-EEecCCeEEEEE--CCe--------eeEE----------Ee-cCC--eEEEEeCCCcEEEEc-
Q 018144 79 NHPEDASMDK-NGVIY-TATRDGWIKRLQ--DGT--------WVNW----------KF-IDS--HLIICDNANGLHKVS- 132 (360)
Q Consensus 79 ~~Pe~i~~d~-~G~l~-v~~~~G~I~~~~--~g~--------~~~~----------~~-~~g--~L~v~~~~~gl~~~~- 132 (360)
..-.++++.+ ++.+. +++.+|.|..++ ++. ...+ .. +++ .|+.++.++.+..++
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 3456788887 66554 555889888888 431 1111 11 233 345555555566677
Q ss_pred CCC--eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCc-
Q 018144 133 EDG--VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFY- 207 (360)
Q Consensus 133 ~~g--~~~l~-~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~- 207 (360)
.++ ...+. ... ...+..+++.++|...++ +...+.|..+|..+++..... ....
T Consensus 162 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~-----------------~~~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 162 GTGAAVLTLGPDVH----PDTIYSVDWSRDGALICT-----------------SCRDKRVRVIEPRKGTVVAEKDRPHEG 220 (402)
T ss_dssp TTTEEEEEECTTTC----CSCEEEEEECTTSSCEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCS
T ss_pred CCCCccEEEecCCC----CCceEEEEECCCCCEEEE-----------------EecCCcEEEEeCCCCceeeeeccCCCC
Confidence 566 33331 111 134678899999976664 223578999998877765443 2322
Q ss_pred -CcceEEEecCCCEEEEEe--CCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 208 -FANGVALSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 208 -~pngia~~~dg~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
.+..+++++|++.++++. +..+.|..+++...... ..............+.++++|++.+
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEE
T ss_pred CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEE
Confidence 368899999987554442 45677888887643221 1111111223456788899887554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.01 Score=60.21 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=94.8
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCee-eEE----------Ee-cCC-eEEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNW----------KF-IDS-HLIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-~~~----------~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
....++++.++|. |.+++.+|.|..++ +++. ..+ .. +++ .|..++.++.+..++ .++ ....
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 3456788888776 55666889888888 4432 111 11 233 355555444455555 433 2111
Q ss_pred eeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCC-CcCcceEEEec
Q 018144 140 LSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-FYFANGVALSR 216 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~-l~~pngia~~~ 216 (360)
..... ..+..+++.+ +|...++ +...|.|..+|..+++... +... ....+.+++++
T Consensus 136 ~~~~~----~~v~~~~~~p~~~~~l~~-----------------~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (814)
T 3mkq_A 136 FEGHE----HFVMCVAFNPKDPSTFAS-----------------GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (814)
T ss_dssp EECCS----SCEEEEEEETTEEEEEEE-----------------EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred EcCCC----CcEEEEEEEcCCCCEEEE-----------------EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence 11111 2467788888 7766664 2335778888876554332 2222 25567899998
Q ss_pred --CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 217 --DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 217 --dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++..++++ +..+.|..++....+ ....+. ...+....+++.++|.+.++..
T Consensus 195 ~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 195 LPDKPYMITA-SDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp STTCCEEEEE-CTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCCEEEEE-eCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence 88755554 456788888875422 122221 2223345677888887555443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.036 Score=50.67 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=79.4
Q ss_pred CCcceEEEcC-CC-CEEEEecCCeEEEEE--CCeeeEE-E---------e-c---CC-eEEEEeCCCcEEEEc-CCC--e
Q 018144 79 NHPEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNW-K---------F-I---DS-HLIICDNANGLHKVS-EDG--V 136 (360)
Q Consensus 79 ~~Pe~i~~d~-~G-~l~v~~~~G~I~~~~--~g~~~~~-~---------~-~---~g-~L~v~~~~~gl~~~~-~~g--~ 136 (360)
....++++.+ ++ .+..++.+|.|..++ +++.... . . . ++ .++++..+..+..++ .++ .
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 3456778877 55 455666889898888 4432211 1 1 0 22 355555555666677 555 3
Q ss_pred EEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEE-----------
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLV----------- 202 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~----------- 202 (360)
..+. ... ..+..+++.++|. ++++ +...|.|..+|..+++ ...+
T Consensus 180 ~~~~-~~~----~~v~~~~~~~~~~~ll~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 180 HILQ-GHR----QEILAVSWSPRYDYILAT-----------------ASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp EEEC-CCC----SCEEEEEECSSCTTEEEE-----------------EETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred eeec-CCC----CcEEEEEECCCCCcEEEE-----------------EcCCCcEEEEECCCCCcccccccccccccceee
Confidence 3332 111 2467888999886 5554 2234567777765442 1111
Q ss_pred ----eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 203 ----ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 203 ----~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.........++++++++.++.+.. .+.|..+++..
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 276 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSN 276 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred ccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCC
Confidence 011224568999999987766665 56788888764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.03 Score=50.29 Aligned_cols=144 Identities=6% Similarity=0.060 Sum_probs=86.9
Q ss_pred EecCCCCCCcceEEEcC-----CCCEEEEecCCeEEEEE-C-Ce-eeEE---------------Ee-cC----Ce-EEEE
Q 018144 72 KVGEGSVNHPEDASMDK-----NGVIYTATRDGWIKRLQ-D-GT-WVNW---------------KF-ID----SH-LIIC 122 (360)
Q Consensus 72 ~~~~~~~~~Pe~i~~d~-----~G~l~v~~~~G~I~~~~-~-g~-~~~~---------------~~-~~----g~-L~v~ 122 (360)
.+..+--..-.++++.+ +..++++..+|.|..++ . ++ ...+ .. .+ |+ |+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 44444334556778875 33477777788887777 2 32 1111 11 12 33 4455
Q ss_pred eCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe
Q 018144 123 DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI 198 (360)
Q Consensus 123 ~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~ 198 (360)
..++.+..++ .++ ...+. ... ..+..+++.+ ++++.++ +...|.|..+|..+++
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~~l~s-----------------~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYV-GHG----NAINELKFHPRDPNLLLS-----------------VSKDHALRLWNIQTDT 149 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEE-SCC----SCEEEEEECSSCTTEEEE-----------------EETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEchhceEeeeec-CCC----CcEEEEEECCCCCCEEEE-----------------EeCCCeEEEEEeecCe
Confidence 5444566666 555 33332 111 3477889998 7877665 2335778899988777
Q ss_pred EEEEe----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 199 TTLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 199 ~~~~~----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
..... ........++++++++.++.+.. .+.|..+++..
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 192 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 192 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEEEET-TSCEEEEESCS
T ss_pred EEEEecccccccCceeEEEECCCCCEEEEecC-CCCEEEEECCC
Confidence 65544 22345678999999986666654 56788888753
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.015 Score=53.18 Aligned_cols=167 Identities=10% Similarity=0.096 Sum_probs=88.4
Q ss_pred cCCCCEEEEe-cCCeEEEEE-CCeeeEEEec--------------CC----eEEEEeCC---CcEEEE--c-CCC-eEEE
Q 018144 87 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFI--------------DS----HLIICDNA---NGLHKV--S-EDG-VENF 139 (360)
Q Consensus 87 d~~G~l~v~~-~~G~I~~~~-~g~~~~~~~~--------------~g----~L~v~~~~---~gl~~~--~-~~g-~~~l 139 (360)
|+...+++++ ..++|+.++ +|+....... +| .+++++.. +.+..| + .++ ++.+
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 3344566666 667788888 6653322110 12 24666654 334444 5 344 4444
Q ss_pred eecc-C-CccccccccEEE--cCC-Cc--EEEEeCCCCCCCccceecccccCCccEEEEEcC---CCCeEE----EEeCC
Q 018144 140 LSYV-N-GSKLRFANDVVE--ASD-GS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP---SSNITT----LVADG 205 (360)
Q Consensus 140 ~~~~-~-~~~~~~~n~l~~--d~d-G~--l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~---~tg~~~----~~~~~ 205 (360)
.... + +..+..|+++|. +++ |. +|+++. .|++..|+. ..|+++ ....-
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k------------------~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK------------------EGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS------------------SSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC------------------CCeEEEEEEEeCCCCcccceEEEEecC
Confidence 2110 0 122367999999 764 54 666542 245544332 223221 11122
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec----cCCCCCCceeEEc--CCCC--EEEEEec
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA----ENLPGAPDNINLA--PDGT--FWIAIIK 272 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~----~~~~g~pd~i~~d--~~G~--lwva~~~ 272 (360)
...|.|+++++....||+++.. ..|++|+.+.....+.+.+. ..+..-+.||++. ++|. |++++.+
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 3578899999988899999987 56999996533211112221 1122246788883 4443 5555544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0084 Score=60.36 Aligned_cols=100 Identities=11% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE----------------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeec
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN----------------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~----------------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~ 142 (360)
+|.||+++.++.|+.+| +|+..- ....+++||+++.+..|+.+| .+| ...-...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 78999999889999999 675320 112367899998778899999 788 3322221
Q ss_pred c-CCcc-ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 143 V-NGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 143 ~-~~~~-~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
. +... ........+ .+|.+|++.....+ ...|.|+.||..||+...
T Consensus 157 ~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRV-FKGKVIIGNGGAEY------------GVRGYITAYDAETGERKW 204 (677)
T ss_dssp TTTCCSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred CcCcCcCcccccCcEE-ECCEEEEEeccccc------------CCCCEEEEEECCCCcEEE
Confidence 1 1000 011111223 25789996543111 124789999999898754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.025 Score=60.48 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=97.4
Q ss_pred CCcceEEEcCCCCEEE-EecCCeEEEEE--CCeee-----------EEEe-cCCe-EEEEeCCCcEEEEc-CCC--eEEE
Q 018144 79 NHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWV-----------NWKF-IDSH-LIICDNANGLHKVS-EDG--VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v-~~~~G~I~~~~--~g~~~-----------~~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~l 139 (360)
..-.++++.++|.+.+ ++.+|.|..++ +++.. .+.. ++|+ |..++.++.+..++ .++ ...+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 3455778888886554 45888888888 44321 1222 2343 44555445566667 566 3333
Q ss_pred eeccCCccccccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEec
Q 018144 140 LSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR 216 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~ 216 (360)
. ... ..+..+++.++ +.+.++ +...+.|..+|..+++......+ ....+.+++++
T Consensus 696 ~-~~~----~~v~~~~~~~~~~~~~l~s-----------------g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 696 D-EHS----EQVNCCHFTNKSNHLLLAT-----------------GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp E-CCS----SCEEEEEECSSSSCCEEEE-----------------EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred c-CCC----CcEEEEEEecCCCceEEEE-----------------EeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence 2 111 24567778774 345554 23356788899887776543333 34567899999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcC-cceee---e------ccCCCCCCceeEEcCCCCEEEEEec
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERK-GKLET---F------AENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~---~------~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++.++.+. ..+.|..+++..... ..... + ..........+++.++|...++...
T Consensus 754 ~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 754 DDELLASCS-ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp STTEEEEEE-SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred CCCEEEEEE-CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 998665554 456788888753311 11100 0 0001113456778889987666544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.61 E-value=0.014 Score=54.92 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=97.4
Q ss_pred CCcceEEEcCC-CC-EEEEecCCeEEEEE--C----------Cee-eEE----------Ee-cCC--eEEEEeCCCcEEE
Q 018144 79 NHPEDASMDKN-GV-IYTATRDGWIKRLQ--D----------GTW-VNW----------KF-IDS--HLIICDNANGLHK 130 (360)
Q Consensus 79 ~~Pe~i~~d~~-G~-l~v~~~~G~I~~~~--~----------g~~-~~~----------~~-~~g--~L~v~~~~~gl~~ 130 (360)
..+.++++.++ +. |++++.+|.|..++ . .+. ..+ .. +.+ .|..+..++.+..
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 208 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence 46778888886 44 45556889898888 3 111 111 11 122 3444444444555
Q ss_pred Ec-CCC---eEEEe--eccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----E
Q 018144 131 VS-EDG---VENFL--SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----T 199 (360)
Q Consensus 131 ~~-~~g---~~~l~--~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----~ 199 (360)
++ .++ ...+. ....+. ...++++++.+ ++.++++.+ ..|.|..+|..++. .
T Consensus 209 wd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 209 WDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHESLFGSVA-----------------DDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp EETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCSCSSSCS
T ss_pred EeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCcce
Confidence 66 332 11110 111111 13477889988 567777632 35788889887552 2
Q ss_pred EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 200 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 200 ~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
..+......++.++++++++.++++....+.|..|++.... .....+. ...+....+.+.++|. ++++..
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE-SHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence 22323344678999999988666666667789999986421 1122222 2233456788888884 555443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.05 Score=50.35 Aligned_cols=158 Identities=10% Similarity=-0.022 Sum_probs=88.6
Q ss_pred EEEcCCCCEEEEecCCeEEEEE--CCeeeEE------------Ee-cCC-eEEEEeCCCcEEEEc-CCC--eEEEeeccC
Q 018144 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNW------------KF-IDS-HLIICDNANGLHKVS-EDG--VENFLSYVN 144 (360)
Q Consensus 84 i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~------------~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~~~~~ 144 (360)
+..++ +.+.+++.+|.|+.++ +++.... .. +++ .|.++..++.+..++ .++ ...+. ...
T Consensus 99 ~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 176 (401)
T 4aez_A 99 LDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQ 176 (401)
T ss_dssp EEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCS
T ss_pred EeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCC
Confidence 44543 5677777888888888 5543221 11 133 455555555566666 555 33332 111
Q ss_pred CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-Ce-EEEEeCCCcCcceEEEecCCCEEE
Q 018144 145 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI-TTLVADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~-~~~~~~~l~~pngia~~~dg~~l~ 222 (360)
..+..+.++ +++.++ +...|.|..+|..+ +. ...+........+++++++++.++
T Consensus 177 ----~~v~~~~~~--~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 233 (401)
T 4aez_A 177 ----ARVGCLSWN--RHVLSS-----------------GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233 (401)
T ss_dssp ----SCEEEEEEE--TTEEEE-----------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ----CceEEEEEC--CCEEEE-----------------EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEE
Confidence 234566663 444443 23457788888763 22 233333344678899999998666
Q ss_pred EEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 018144 223 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 270 (360)
.+.. .+.|..+++...+ ....+. ........+++.++|. +.++.
T Consensus 234 s~~~-d~~v~iwd~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 234 SGGN-DNVVQIWDARSSI--PKFTKT-NHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEET-TSCEEEEETTCSS--EEEEEC-CCSSCCCEEEECTTSTTEEEEE
T ss_pred EEeC-CCeEEEccCCCCC--ccEEec-CCcceEEEEEECCCCCCEEEEe
Confidence 6554 5678888875421 111221 2333467788888774 55543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.022 Score=51.25 Aligned_cols=137 Identities=13% Similarity=0.049 Sum_probs=76.1
Q ss_pred CcceEEEcCC----C-CEEEEecCCeEEEEE--CCeee-----------EEEe-c-CCe-EEEEeCCCcEEEEc-CCC--
Q 018144 80 HPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTWV-----------NWKF-I-DSH-LIICDNANGLHKVS-EDG-- 135 (360)
Q Consensus 80 ~Pe~i~~d~~----G-~l~v~~~~G~I~~~~--~g~~~-----------~~~~-~-~g~-L~v~~~~~gl~~~~-~~g-- 135 (360)
.-.++++.++ | .|.+++.+|.|..++ +++.. .+.. + ++. |..++.++.+..++ .++
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 3456777766 3 356666889888887 44321 1222 2 344 45555455566677 566
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-------------
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV------------- 202 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~------------- 202 (360)
...+. ...+. ...+..++++++|...++- ...|.|..+|..+++....
T Consensus 151 ~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 151 VAIFG-GVEGH-RDEVLSADYDLLGEKIMSC-----------------GMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp EEEEC-STTSC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred EEEec-ccccc-cCceeEEEECCCCCEEEEe-----------------cCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence 33331 11111 1357788999998766642 2345677777664432110
Q ss_pred ----------------eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 203 ----------------ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 203 ----------------~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.........++++ ++ ++++.+..+.|..+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGK 260 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESS
T ss_pred ccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCC
Confidence 0012235677887 55 445555577898888754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.023 Score=50.80 Aligned_cols=169 Identities=9% Similarity=0.030 Sum_probs=91.0
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCe----eeEE----------Ee-cCCe--EEEEeCCCcEEEEcC-CC--
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----WVNW----------KF-IDSH--LIICDNANGLHKVSE-DG-- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~----~~~~----------~~-~~g~--L~v~~~~~gl~~~~~-~g-- 135 (360)
..-.++++.++|. |++++.+|.|..++ +++ .... .. +++. |+.+..++.+..++- ..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 3456778887765 55666888887777 333 2211 11 2344 666665555666663 33
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC---------CeEEEEeCCC
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---------NITTLVADGF 206 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t---------g~~~~~~~~l 206 (360)
...+.... . ...+..+++.+ +...++- ...+.|..+|..+ ++........
T Consensus 92 ~~~~~~~~--~-~~~v~~l~~~~-~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 92 FQALTNNE--A-NLGICRICKYG-DDKLIAA-----------------SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp EEECBSCC--C-CSCEEEEEEET-TTEEEEE-----------------ETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred eEeccccC--C-CCceEEEEeCC-CCEEEEE-----------------cCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 32221100 1 13467788888 7666642 2356777777643 2211111122
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecC-CcCcceeeeccCCCCCCceeEEcC-CCCEEEEEec
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIK 272 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~ 272 (360)
..+..+++++++ ++++. ..+.|..|++.. .... ...........+..+.+.+ +|++.+....
T Consensus 151 ~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp CCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred CceEEEEecCCc--EEEEe-CCCeEEEEECCcccccc-ceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 345678888876 55554 456899999865 2211 1112112333456788888 8875554433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00084 Score=64.41 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred ccccccEEEcCCCc--EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----EEEE----eCC-----CcCcceE
Q 018144 148 LRFANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLV----ADG-----FYFANGV 212 (360)
Q Consensus 148 ~~~~n~l~~d~dG~--l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----~~~~----~~~-----l~~pngi 212 (360)
+..|.+|++.+||. |||++. .|+|+.++++... +..+ ..+ ....-||
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er------------------~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgi 74 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEK------------------EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSL 74 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEET------------------TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeC------------------CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceee
Confidence 35688999999985 999752 4789999865321 1111 111 2345689
Q ss_pred EEecC---CCEEEEEeCCC------------CEEEEEEecCC---c--CcceeeeccCC-CC---CCceeEEcCCCCEEE
Q 018144 213 ALSRD---EDYVVVCESWK------------FRCRKYWLKGE---R--KGKLETFAENL-PG---APDNINLAPDGTFWI 268 (360)
Q Consensus 213 a~~~d---g~~l~v~~t~~------------~~i~~~~~~g~---~--~~~~~~~~~~~-~g---~pd~i~~d~~G~lwv 268 (360)
+++|+ +..+|++.+.. .+|.||..+.. . ....+++.+.. +. ....|++++||.|||
T Consensus 75 a~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv 154 (463)
T 2wg3_C 75 AFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYI 154 (463)
T ss_dssp EECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEE
T ss_pred EeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEE
Confidence 99986 34688886521 48999988632 1 12233332211 11 234589999999999
Q ss_pred EEecC
Q 018144 269 AIIKL 273 (360)
Q Consensus 269 a~~~~ 273 (360)
++...
T Consensus 155 ~~Gd~ 159 (463)
T 2wg3_C 155 ILGDG 159 (463)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.035 Score=59.43 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCeee-EE----------Eec---CCeEE-EEeCCCcEEEEc-CCC--eE
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-NW----------KFI---DSHLI-ICDNANGLHKVS-EDG--VE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~-~~----------~~~---~g~L~-v~~~~~gl~~~~-~~g--~~ 137 (360)
....++++.++|... +++.+|.|..++ +++.. .+ ... ++.+. .++.++.+..++ .++ ..
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence 345678888887654 455889888888 55322 11 111 22233 333334455566 555 33
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-------------
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------------- 204 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~------------- 204 (360)
.+. .. ...+..+++.++|...++- ...|.|..+|..+++......
T Consensus 738 ~~~-~h----~~~v~~~~~sp~~~~l~s~-----------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 738 TMF-GH----TNSVNHCRFSPDDELLASC-----------------SADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795 (1249)
T ss_dssp EEC-CC----SSCEEEEEECSSTTEEEEE-----------------ESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred eec-CC----CCCEEEEEEecCCCEEEEE-----------------ECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence 321 11 1347788999999877753 235677778776554432211
Q ss_pred -CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 205 -GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 -~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.......+++++||+.++++. .+.+..++..... ....+.....+....+.++++|++.++...
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 860 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECS
T ss_pred cccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeC
Confidence 011356788999999777766 4678888875432 122222223344667888999987665544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.033 Score=54.95 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=37.1
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++.++++|||+.+..+. ..+.|..+++++......... ...+....+++.++|.+.++..
T Consensus 451 v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~~~~~~--~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp EEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCCCCEEEEeC-CCCeEEEEEccCCceeeeecc--CCCCceEEEEECCCCCEEEEEc
Confidence 46788999998655554 456788888765322111111 2333456788899998666544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.041 Score=54.26 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=29.2
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
+.+..+|. +|+++..+..+.+.... + .+.+.+|++|++...
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~-P-~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSP-P-ITWEQDGEQYLGVTV 548 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSC-C-EEEEETTEEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccC-c-eEEEECCEEEEEEEc
Confidence 68999995 79999999887764221 2 223478999998543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.014 Score=53.44 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=65.3
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcC-CCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~-dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
.++.++ .++ .+.+.... ..+..+.+.+ +|. |+++.... . ......|+.+|.++++.+.+
T Consensus 169 ~l~~~d~~~g~~~~~~~~~-----~~~~~~~~sp~dg~~l~~~~~~~-~-----------~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQDT-----AWLGHPIYRPFDDSTVGFCHEGP-H-----------DLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp EEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC-S-----------SSCSCCCEEEETTSCCCEES
T ss_pred eEEEEECCCCcEEeeccCC-----cccccceECCCCCCEEEEEecCC-C-----------CCCCceEEEEECCCCceeEe
Confidence 466666 555 44443211 2345677888 664 55542110 0 00114688899876666555
Q ss_pred eCC--CcCcceEEEecCCCEEEEEeC--CCC--EEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEE
Q 018144 203 ADG--FYFANGVALSRDEDYVVVCES--WKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAI 270 (360)
Q Consensus 203 ~~~--l~~pngia~~~dg~~l~v~~t--~~~--~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~ 270 (360)
... ...+..++++|||+.|+++.. ... .|+++++++.+ ...+. ..++. +..+.+ +|++++..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~-~~~~~--~~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVM-VMPPC--SHLMSNFDGSLMVGD 300 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEE-ECCSE--EEEEECSSSSEEEEE
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEee-eCCCC--CCCccCCCCceEEEe
Confidence 432 223566899999986655532 222 38888875432 22222 12221 267777 89866543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.036 Score=54.74 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=92.2
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCee-----------eEEEe-cCCeEEE-EeCCCcEEEEc-CCC--e-EEE
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-----------VNWKF-IDSHLII-CDNANGLHKVS-EDG--V-ENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~-----------~~~~~-~~g~L~v-~~~~~gl~~~~-~~g--~-~~l 139 (360)
..|..++++++|...+...++.|...+ +++. ..+.+ ++|++.+ ++.++-+...+ .++ . ...
T Consensus 19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence 467888899998765554456676666 3321 12222 3455333 33333344455 333 1 111
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-EEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-~~~~~l~~pngia~~~dg 218 (360)
..... ..+++++++++|...++-+.. ....+.|..+|. ++.. .+.......+.++++|++
T Consensus 99 ~~~~~----~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 99 IPVFS----GPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp EECSS----SCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS
T ss_pred ecccC----CceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC
Confidence 11111 247889999999866643210 011246777763 3221 122223356789999998
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
...+++.+..+.|..++....+ ....+. ........+++.++|.+.++...
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l~-~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFG-EHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEeCCCeEEEEECCCCe--Eeeeec-cccCceEEEEECCCCCEEEEEEC
Confidence 7555565556677777753211 112222 22334567888999987665443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.072 Score=50.06 Aligned_cols=170 Identities=7% Similarity=-0.020 Sum_probs=100.8
Q ss_pred CCeEEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+..|.++..++.+..++ .++ ...+. .. ...+..++++++|...++ +...|.|..+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~l~s-----------------g~~dg~i~vw 337 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILS-GH----TDRIYSTIYDHERKRCIS-----------------ASMDTTIRIW 337 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEEC-CC----SSCEEEEEEETTTTEEEE-----------------EETTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEec-CC----CCCEEEEEEcCCCCEEEE-----------------EeCCCcEEEE
Confidence 34466666555666677 555 33331 11 134678889999876665 2335778899
Q ss_pred cCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 193 DPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 193 d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
|..+++......+ ......++++ ++.++.+. ..+.|..+++.... . .+..........+++.++|++.++..
T Consensus 338 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 338 DLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDANDYS--R--KFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTTCC--E--EEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCCCc--e--eeeecCCCCccEEEEEeCCCEEEEec
Confidence 9887876544333 2334566665 45455444 46788888875422 1 11111222345567788888766554
Q ss_pred cCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 272 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 272 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
. +.|..+| .+|+.+..+.... ...+..+..+++.+.+++-.
T Consensus 411 d-----------------------------------g~i~iwd~~~g~~~~~~~~~~---~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 411 E-----------------------------------NQFNIYNLRSGKLVHANILKD---ADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp T-----------------------------------TEEEEEETTTCCEEESCTTTT---CSEEEEEEEETTEEEEEEEE
T ss_pred C-----------------------------------CeEEEEECCCCcEEehhhccC---CCcEEEEEecCCEEEEEEEe
Confidence 4 4677777 4677766433322 24577888888888877655
Q ss_pred CC
Q 018144 351 SN 352 (360)
Q Consensus 351 ~~ 352 (360)
+.
T Consensus 453 ~g 454 (464)
T 3v7d_B 453 DG 454 (464)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.027 Score=50.94 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=65.6
Q ss_pred ccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEe
Q 018144 150 FANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 150 ~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~ 225 (360)
.+..+++.+ +|++.++ +...|.|..+|..+++....... ....+.++++||+.. +++.
T Consensus 127 ~v~~~~~~~~~~~~~l~s-----------------~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-lasg 188 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIW-----------------ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-LALY 188 (343)
T ss_dssp CEEEEECCC---CCEEEE-----------------EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-EEEE
T ss_pred CEEEEEcCCCCCCCEEEE-----------------EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE-EEEE
Confidence 367788888 8887775 23357788899887776443322 224678999999984 4444
Q ss_pred CCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 226 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 226 t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+..+.|..+++...+.. ...+.....+....+.+.++|.+.++...
T Consensus 189 ~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp CTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred cCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 45678999998643221 01222112344667888999976665544
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.047 Score=50.11 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=90.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~pngia~~~dg~~l~v~~t 226 (360)
.+++|++.+||.+.++-+ .+.+.+++..+++....... -...+.++++||++.++.+..
T Consensus 178 ~V~~v~fspdg~~l~s~s------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 178 EVKDLHFSTDGKVVAYIT------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp CCCEEEECTTSSEEEEEC------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEccCCceEEecc------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 478999999998777532 23566777666654332211 223578999999987766654
Q ss_pred CCC---EEEEEEecCCcCcce--eeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 227 WKF---RCRKYWLKGERKGKL--ETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 227 ~~~---~i~~~~~~g~~~~~~--~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
.+. .+..++......... ..+. ........+++.++|++.++...
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~----------------------------- 289 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASN----------------------------- 289 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEET-----------------------------
T ss_pred CCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcC-----------------------------
Confidence 332 355555533211111 1111 12223456788999986654433
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 302 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 302 ~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. +++.+..+.. |- ...++++.+. +|++.+..-..+.|.++++
T Consensus 290 -----D~~V~iwd~~~~~~~~~~~~--gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 290 -----DNSIALVKLKDLSMSKIFKQ--AH-SFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp -----TSCEEEEETTTTEEEEEETT--SS-SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred -----CCEEEEEECCCCcEEEEecC--cc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 245666774 5777766532 21 2357888887 5666666666777877765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0032 Score=61.74 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=89.0
Q ss_pred CcceEEEcCCC--CEEEEecCCeEEEEE--CCeeeEEE---------ecCCeEEE-EeCC----CcEEEEc-CCC-eEEE
Q 018144 80 HPEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWK---------FIDSHLII-CDNA----NGLHKVS-EDG-VENF 139 (360)
Q Consensus 80 ~Pe~i~~d~~G--~l~v~~~~G~I~~~~--~g~~~~~~---------~~~g~L~v-~~~~----~gl~~~~-~~g-~~~l 139 (360)
+....++.++| .+|++..++.+..++ +|+.+.+. .++|+.++ +... ..++.++ .+| .+.+
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 33344444444 566665555555666 56543322 13454333 3322 3477777 666 6655
Q ss_pred eeccCCccccccccEEEcCCCcEEEE-eCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC-cCcceEE----
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA---- 213 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vt-d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l-~~pngia---- 213 (360)
... . ...+.+++++||+..++ +.. ....|+.+|.++++.+ +..+. ..+.+++
T Consensus 191 ~~~-~----~~~~~~~~SpDG~~l~~~~~~----------------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 191 DSG-E----GSFSSASISPGMKVTAGLETA----------------REARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp CCS-S----CEEEEEEECTTSCEEEEEECS----------------SCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred ecC-C----CccccceECCCCCEEEEccCC----------------CeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 321 1 23477899999974443 211 1237999999988877 43332 2234455
Q ss_pred ----EecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 214 ----LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 214 ----~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
++|||. ++++....+.+..|.+ |.. .. ...+....+.++ +|.+++....
T Consensus 249 ~~~~~spdg~-~~~~~~~~g~~~l~~~-g~~----~~---~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 249 TWLGYLPDGR-LAVVARREGRSAVFID-GER----VE---APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp EEEEECTTSC-EEEEEEETTEEEEEET-TEE----EC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred cceeEcCCCc-EEEEEEcCCcEEEEEE-CCe----ec---cCCCceEEEEec-CCEEEEEEcC
Confidence 999995 6666655667777776 321 11 112234467777 7876665443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.058 Score=49.15 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=96.7
Q ss_pred ceEEEcCCC-CEEEEecCCeEEEEE--CCeee-EE----------Ee---cCC-eEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 82 EDASMDKNG-VIYTATRDGWIKRLQ--DGTWV-NW----------KF---IDS-HLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 82 e~i~~d~~G-~l~v~~~~G~I~~~~--~g~~~-~~----------~~---~~g-~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
.++++.+++ .|..++.+|.|..++ +++.. .+ .. .+| .|+.+..++.+..++ .++ ...+.
T Consensus 158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~ 237 (354)
T 2pbi_B 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237 (354)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 456777766 466677899888888 44321 11 11 123 455555555666677 566 33331
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCcceEEEecC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALSRD 217 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~pngia~~~d 217 (360)
... ..++.+++.++|...++- ...+.|..+|..+++....... ......++++++
T Consensus 238 -~h~----~~v~~v~~~p~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 238 -THE----SDVNSVRYYPSGDAFASG-----------------SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp -CCS----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred -CCC----CCeEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 111 347789999999877752 2356788888766654333221 224568899999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++.++.+. ..+.|..++..... ....+. ...+....+++.++|.+.++..
T Consensus 296 g~~l~~g~-~d~~i~vwd~~~~~--~~~~l~-~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 296 GRLLFAGY-NDYTINVWDVLKGS--RVSILF-GHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp SSEEEEEE-TTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEE-CCCcEEEEECCCCc--eEEEEE-CCCCcEEEEEECCCCCEEEEEc
Confidence 98666555 45678888874321 122222 2233456688899997655443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.01 Score=54.67 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=82.9
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCeee-------------EEE-ecCCe-EEEEeCCC--c--EEEEc-CCC-e
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-------------NWK-FIDSH-LIICDNAN--G--LHKVS-EDG-V 136 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~-------------~~~-~~~g~-L~v~~~~~--g--l~~~~-~~g-~ 136 (360)
.-.++++.++|.+.+...++.+.+++ +++.. .+. .++|. +..+...+ + +..++ ..+ .
T Consensus 178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 35688999999888777677788877 44321 111 12444 33333332 2 22333 333 2
Q ss_pred EEEe-eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCC-CcCcceEE
Q 018144 137 ENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-FYFANGVA 213 (360)
Q Consensus 137 ~~l~-~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~-l~~pngia 213 (360)
.... ....+. ...++.+++.+||++.++ +..++.|..+|..+++... +..+ ....+.++
T Consensus 258 ~~~~~~~~~~~-~~~V~~~~~Spdg~~las-----------------gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 258 SVLRSKQVTNR-FKGITSMDVDMKGELAVL-----------------ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp EEEEEEEEESS-CSCEEEEEECTTSCEEEE-----------------EETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred cceeeeeecCC-CCCeEeEEECCCCCceEE-----------------EcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 2111 111111 134678899999987775 3345778899998887644 3333 33568999
Q ss_pred EecCCCEEEEEeCCCCEEEEEEec
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
|+|||+.| ++.+..+.|..+++.
T Consensus 320 fSpdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 320 ISPDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp ECTTSCEE-EEEETTSEEEEEECC
T ss_pred ECCCCCEE-EEEeCCCeEEEEEcC
Confidence 99999844 555556788888874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.04 Score=55.26 Aligned_cols=41 Identities=10% Similarity=0.251 Sum_probs=28.6
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
+.|..+|. .|+++..+..+.+.... +. ....+|++|++...
T Consensus 479 g~l~a~d~~tG~~l~~~~~~~~~~~~-p~-~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 479 GQMHAYSADKGEALWQFEAQSGIVAA-PM-TFELAGRQYVAIMA 520 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSC-CE-EEEETTEEEEEEEE
T ss_pred ccchhhhhhcChhheEecCCCCcccC-ce-EEEECCEEEEEEEe
Confidence 68899985 69999999887654222 22 22578999987654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.043 Score=54.98 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=92.5
Q ss_pred CcceEEEcCC-CC-EEEEecCCeEEEEE-C-C-----e-----------eeEEEe-cCCe-EEEEeCCCcEEEEc-CCC-
Q 018144 80 HPEDASMDKN-GV-IYTATRDGWIKRLQ-D-G-----T-----------WVNWKF-IDSH-LIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 80 ~Pe~i~~d~~-G~-l~v~~~~G~I~~~~-~-g-----~-----------~~~~~~-~~g~-L~v~~~~~gl~~~~-~~g- 135 (360)
.-.+|++.++ +. |..++.||.|..++ + + . +..+.. ++|+ |..++.++.+..++ .++
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 3456677654 34 45566888887776 2 1 1 111111 2444 44444444455566 566
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC----CcCcc
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFAN 210 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----l~~pn 210 (360)
...+. ... ..+..+++.++|+..+|- ...+.|..+|..+.....+... ....+
T Consensus 464 ~~~~~~-~h~----~~v~~~~~s~~~~~l~s~-----------------s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 464 STRRFV-GHT----KDVLSVAFSLDNRQIVSA-----------------SRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EEEEEE-CCS----SCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred ceeEEe-CCC----CCEEEEEEeCCCCEEEEE-----------------eCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 33332 111 246788999999766652 2356677788654433333221 12356
Q ss_pred eEEEecCCC-EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 211 GVALSRDED-YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 211 gia~~~dg~-~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+++++++. .++++.+..+.|..+++...+. ...+. ...+....++++++|++.++...
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeCCCCEEEEEeC
Confidence 889999862 2445555567788888754321 12221 23344567888999987665543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0055 Score=61.56 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=38.3
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc-------------------Ccc
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-------------------FAN 210 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~-------------------~pn 210 (360)
+..+++++||+ |.++. .+.|+.+|.++++...+..... ...
T Consensus 116 ~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp CSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred ccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 56778999995 44431 2478999988777665543211 225
Q ss_pred eEEEecCCCEEEEEe
Q 018144 211 GVALSRDEDYVVVCE 225 (360)
Q Consensus 211 gia~~~dg~~l~v~~ 225 (360)
+++++|||+.|+++.
T Consensus 177 ~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAA 191 (723)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred eEEECCCCCEEEEEE
Confidence 799999999887765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.059 Score=50.12 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=62.1
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeEEEEe--------CCCcCcceEEEecCC-C
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVA--------DGFYFANGVALSRDE-D 219 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~~~~~--------~~l~~pngia~~~dg-~ 219 (360)
.+..+++.++|++.++ + ..+.|..+|..+ ++..... ......+.++++|++ +
T Consensus 179 ~v~~~~~~~~~~~l~s-----------------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 179 HINSISINSDYETYLS-----------------A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp CCCEEEECTTSSEEEE-----------------E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred ceEEEEEcCCCCEEEE-----------------e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 5678899999987775 2 356788888762 2222211 112346789999998 7
Q ss_pred EEEEEeCCCCEEEEEEecCCcCc--ceeeeccCCC-----------CCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKG--KLETFAENLP-----------GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~~~~~-----------g~pd~i~~d~~G~lwva~~~ 272 (360)
.++.+. ..+.|..+++...+.. ....+..... +....+.++++|.+.++...
T Consensus 241 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 241 TFVYSS-SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp EEEEEE-TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred EEEEEe-CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 555544 4567888887643321 1233321111 13557888999987665443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00055 Score=63.59 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=54.9
Q ss_pred EEcCCCCEEEEecCCeEEEEE--CCeeeE-EE---------ecCCeEEEEe-CCCcEEEEc-CCC-e-EEEeeccCCccc
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVN-WK---------FIDSHLIICD-NANGLHKVS-EDG-V-ENFLSYVNGSKL 148 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~--~g~~~~-~~---------~~~g~L~v~~-~~~gl~~~~-~~g-~-~~l~~~~~~~~~ 148 (360)
+++ ++.||+++.+|.|+.+| +|+..- +. ..+|.+|++. .+..++.+| ++| . ..+.........
T Consensus 6 ~v~-~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 6 TLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp --C-TTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eee-CCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 443 78899999999999999 675331 11 1245567653 445688888 566 3 222111000000
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..| ++..+|.||+. ...+.|+.+|+++|+....... ......+++++.+|++.. .
T Consensus 85 ~sp---~~~~~~~v~~g------------------~~dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-d 139 (369)
T 2hz6_A 85 ASP---CRSSDGILYMG------------------KKQDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-E 139 (369)
T ss_dssp TCS---CC-----CCCC------------------EEEEEEEEECCC-------------------------EEEEEE-E
T ss_pred cCc---eEecCCEEEEE------------------eCCCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-C
Confidence 111 22235667762 2357899999998876543221 112344556777887754 4
Q ss_pred CEEEEEEecC
Q 018144 229 FRCRKYWLKG 238 (360)
Q Consensus 229 ~~i~~~~~~g 238 (360)
+.|+.++.+.
T Consensus 140 g~v~a~d~~t 149 (369)
T 2hz6_A 140 YTITMYDTKT 149 (369)
T ss_dssp EEEECCCSSS
T ss_pred CEEEEEECCC
Confidence 5788888753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.054 Score=49.82 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=91.5
Q ss_pred CCEEEEecCCeEEEEE--CCeee-EE---------------Ee--cCCeEEE-EeCCCcEEEEc-C-CC--eEEEeeccC
Q 018144 90 GVIYTATRDGWIKRLQ--DGTWV-NW---------------KF--IDSHLII-CDNANGLHKVS-E-DG--VENFLSYVN 144 (360)
Q Consensus 90 G~l~v~~~~G~I~~~~--~g~~~-~~---------------~~--~~g~L~v-~~~~~gl~~~~-~-~g--~~~l~~~~~ 144 (360)
..|..++.+|.|..++ +++.. .+ .. .++.+++ +..++-+..+| . .+ ...+. ...
T Consensus 171 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~ 249 (380)
T 3iz6_a 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHE 249 (380)
T ss_dssp SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCS
T ss_pred CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcC
Confidence 3577888899888887 44321 11 11 1344444 33334455555 3 22 33331 111
Q ss_pred CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--------CcCcceEEEec
Q 018144 145 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------FYFANGVALSR 216 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--------l~~pngia~~~ 216 (360)
..++.+++.++|...+| +...+.|..+|..+++....... ......+++++
T Consensus 250 ----~~v~~v~~~p~~~~l~s-----------------~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 250 ----GDINSVKFFPDGQRFGT-----------------GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ----SCCCEEEECTTSSEEEE-----------------ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ----CCeEEEEEecCCCeEEE-----------------EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 35789999999987776 33467788888887765443221 12357899999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeec---cCCCCCCceeEEcCCCCEEEEEe
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFA---ENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~---~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
+|+.++.+ ...+.|..++....+ ....+. ....+....+++.++|.+.++..
T Consensus 309 ~g~~l~~g-~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 309 SGRLLFAG-YSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp SSSEEEEE-CTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEE-ECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 99855554 456778888864321 111111 12334466788999998666543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.32 E-value=0.088 Score=47.51 Aligned_cols=168 Identities=9% Similarity=0.045 Sum_probs=87.4
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE--CCee-eEEE----------e-cCC-eEEEEeCCCcEEEEc-CCCeEEEeec
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWK----------F-IDS-HLIICDNANGLHKVS-EDGVENFLSY 142 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~-~~~~----------~-~~g-~L~v~~~~~gl~~~~-~~g~~~l~~~ 142 (360)
.-.++++.+++.+. .++.+|.|..++ +++. ..+. . +++ .|..+..++.+..++ ..........
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 157 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec
Confidence 44677888887654 455888888887 4432 1221 1 233 344444444454555 3221111111
Q ss_pred cCCccccccccEEEcCCC----------cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-EEeCCCcCcce
Q 018144 143 VNGSKLRFANDVVEASDG----------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANG 211 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG----------~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-~~~~~l~~png 211 (360)
..+ ....+..+.+.+++ .+.++ +...+.|..+|.. ++.. .+.......+.
T Consensus 158 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 158 KEN-HSDWVSCVRYSPIMKSANKVQPFAPYFAS-----------------VGWDGRLKVWNTN-FQIRYTFKAHESNVNH 218 (343)
T ss_dssp TTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEE-----------------EETTSEEEEEETT-TEEEEEEECCSSCEEE
T ss_pred ccC-CCceeeeeeeccccccccccCCCCCEEEE-----------------EcCCCEEEEEcCC-CceeEEEcCccccceE
Confidence 001 11235566666665 33332 3345778888854 4333 23223345678
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
++++|||+.|..+. ..+.|..+++..... ....+. .......++++++|.+..+.
T Consensus 219 ~~~s~~g~~l~sgs-~dg~v~iwd~~~~~~-~~~~~~--~~~~v~~v~~sp~~~~la~~ 273 (343)
T 2xzm_R 219 LSISPNGKYIATGG-KDKKLLIWDILNLTY-PQREFD--AGSTINQIAFNPKLQWVAVG 273 (343)
T ss_dssp EEECTTSSEEEEEE-TTCEEEEEESSCCSS-CSEEEE--CSSCEEEEEECSSSCEEEEE
T ss_pred EEECCCCCEEEEEc-CCCeEEEEECCCCcc-cceeec--CCCcEEEEEECCCCCEEEEE
Confidence 99999998655444 467888888732211 111221 11235678888888755433
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.094 Score=47.43 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=88.5
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE-CCe-ee--------------EEEecCCeEEEEeCCCcEEEEcCCC--eEEEee
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DGT-WV--------------NWKFIDSHLIICDNANGLHKVSEDG--VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~-~~--------------~~~~~~g~L~v~~~~~gl~~~~~~g--~~~l~~ 141 (360)
.-.+|++..++.+|+....|.|++-. .|+ ++ .+...++++|++....++++-+..| .+.+..
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~ 116 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 116 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCC
T ss_pred cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCceECcc
Confidence 45566666677888766777787765 331 11 1222356788765444454433334 333321
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC-cCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l-~~pngia~~~dg~~ 220 (360)
.. ..+ ..++.|++.+++++|+.. ..|.|++-+-.....+...... ....++++++++.
T Consensus 117 ~~-~~~-~~~~~i~~~~~~~~~~~~------------------~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~- 175 (327)
T 2xbg_A 117 DP-KLP-GSPRLIKALGNGSAEMIT------------------NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE- 175 (327)
T ss_dssp CT-TCS-SCEEEEEEEETTEEEEEE------------------TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-
T ss_pred cc-CCC-CCeEEEEEECCCCEEEEe------------------CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-
Confidence 11 000 124567777778888852 1345776543323444443322 2345788888886
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|+... .+.+++-+-.+.. ..+......+.....+.++++|++|++...
T Consensus 176 ~~~~g~-~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 224 (327)
T 2xbg_A 176 YVAVSS-RGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPDGRLWMIVNG 224 (327)
T ss_dssp EEEEET-TSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTTSCEEEEETT
T ss_pred EEEEEC-CCcEEEEeCCCCC--ceeECCCCCCCccceeEECCCCCEEEEeCC
Confidence 444443 3457765432111 112221112223456778888999987654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.062 Score=54.11 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=29.1
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
+.|..+|. +|+++..+..+.+.... +. ..+.+|+.|++...
T Consensus 496 g~l~a~D~~tG~~lw~~~~~~~~~~~-p~-ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 496 GRVIAYAADTGEKLWEQPAASGVMAA-PV-TYSVDGEQYVTFMA 537 (689)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSC-CE-EEEETTEEEEEEEE
T ss_pred CcEEEEECCCCccceeeeCCCCcccC-ce-EEEECCEEEEEEEe
Confidence 68999995 69999999887764222 21 22578999988653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.033 Score=50.53 Aligned_cols=102 Identities=7% Similarity=0.041 Sum_probs=58.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeC-CCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VAD-GFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~-~l~~pngia~~~dg~~l~v~~t 226 (360)
.+..+++.++|+..++- ...+.+..+|..++..+. ... .....+.++++|+++.|..+.
T Consensus 63 ~v~~~~~sp~g~~l~s~-----------------s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s- 124 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASA-----------------SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS- 124 (345)
T ss_dssp CEEEEEECTTSSEEEEE-----------------ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred cEEEEEECCCCCEEEEE-----------------ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-
Confidence 47788999999876652 224556666655454322 222 234568899999998665555
Q ss_pred CCCEEEEEEecCCcCcc-eeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 227 WKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
..+.|..++++...... ...+. ........+++.++|.+.++.
T Consensus 125 ~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 125 RDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp TTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSSSCEEEE
T ss_pred CCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCCCEEEEE
Confidence 45678888875432111 12221 122234456777877654443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.065 Score=56.49 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=75.0
Q ss_pred eEEEcCCC-CEEEEecCCeEE-EEE--CCeee----------EEEe-cCC-eEEEEeCCCcEEEEc-CCC-eEEEeeccC
Q 018144 83 DASMDKNG-VIYTATRDGWIK-RLQ--DGTWV----------NWKF-IDS-HLIICDNANGLHKVS-EDG-VENFLSYVN 144 (360)
Q Consensus 83 ~i~~d~~G-~l~v~~~~G~I~-~~~--~g~~~----------~~~~-~~g-~L~v~~~~~gl~~~~-~~g-~~~l~~~~~ 144 (360)
++++. +| .|++++.++.|+ .++ .++.. .+.. ++| .|+.+.....++.++ .+| ...+.....
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 44555 54 344444556677 666 33222 1111 234 466666556788888 677 554432221
Q ss_pred CccccccccEEEcCCCcEE-EEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 145 GSKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~-vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
..+..+++++||+.. ++.....+.. .....+.|+.+|.++++...+.........+++++||+.+++
T Consensus 421 ----~~v~~~~~SpDG~~la~~~~~~~~~~--------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 421 ----AMITDFTISDNSRFIAYGFPLKHGET--------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp ----SCCCCEEECTTSCEEEEEEEECSSTT--------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred ----CCccceEECCCCCeEEEEecCccccc--------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence 235788999999743 3221100000 001235799999988886655555556678999999998887
Q ss_pred EeC
Q 018144 224 CES 226 (360)
Q Consensus 224 ~~t 226 (360)
...
T Consensus 489 ~s~ 491 (1045)
T 1k32_A 489 LSY 491 (1045)
T ss_dssp EES
T ss_pred Eec
Confidence 765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.037 Score=49.58 Aligned_cols=166 Identities=15% Similarity=0.052 Sum_probs=85.7
Q ss_pred CCcceEEEcCCCCEEE-Ee-c---CCeEEEEE--CCeeeE------------EEe-cC----CeEEEEeCCCcEEEEc-C
Q 018144 79 NHPEDASMDKNGVIYT-AT-R---DGWIKRLQ--DGTWVN------------WKF-ID----SHLIICDNANGLHKVS-E 133 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v-~~-~---~G~I~~~~--~g~~~~------------~~~-~~----g~L~v~~~~~gl~~~~-~ 133 (360)
....++++.++|..++ +. . +|.|..++ +++... +.. ++ ..|+.+..++.+..++ .
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 4567888888774433 33 3 78888777 443221 111 12 3455555555566666 3
Q ss_pred CC---eEEEeeccCCccccccccE------EEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEE
Q 018144 134 DG---VENFLSYVNGSKLRFANDV------VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLV 202 (360)
Q Consensus 134 ~g---~~~l~~~~~~~~~~~~n~l------~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~ 202 (360)
++ ...+. ... ..+..+ ++.++|+..++ +...+.|..+|..+++ ...+
T Consensus 99 ~~~~~~~~~~-~~~----~~v~~~~~~~~~~~s~~~~~l~~-----------------~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 99 APEMPVYSVK-GHK----EIINAIDGIGGLGIGEGAPEIVT-----------------GSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp SCSSCSEEEC-CCS----SCEEEEEEESGGGCC-CCCEEEE-----------------EETTSCEEEECTTSCSSCSEEE
T ss_pred CCCccEEEEE-ecc----cceEEEeeccccccCCCccEEEE-----------------EeCCCeEEEEeCCCCCCcceec
Confidence 33 22221 111 123334 44677776664 2235678888877654 2222
Q ss_pred eC--C--CcCcceEE----EecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC---CCCEEEEEe
Q 018144 203 AD--G--FYFANGVA----LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP---DGTFWIAII 271 (360)
Q Consensus 203 ~~--~--l~~pngia----~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~---~G~lwva~~ 271 (360)
.. + ......++ ++++++.++.+. ..+.|..+++...+. ... .........+.+++ +|++.++..
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGY-DNGDIKLFDLRNMAL---RWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEE-TTSEEEEEETTTTEE---EEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEc-cCCeEEEEECccCce---eee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 21 1 11334455 678998666555 457899999865332 111 12233456778887 776554433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.093 Score=53.05 Aligned_cols=138 Identities=15% Similarity=0.061 Sum_probs=71.6
Q ss_pred cEEEEEcCCC---C---eEEEEeC------CCcCcceEEEecCCCEEEEE-eCCC--CEEEEEEecCCc----Cc-ceee
Q 018144 187 GQLLKYDPSS---N---ITTLVAD------GFYFANGVALSRDEDYVVVC-ESWK--FRCRKYWLKGER----KG-KLET 246 (360)
Q Consensus 187 g~l~~~d~~t---g---~~~~~~~------~l~~pngia~~~dg~~l~v~-~t~~--~~i~~~~~~g~~----~~-~~~~ 246 (360)
..|+.+|.++ + +...+.. .......++++|||+.++.. .... ..|+.++.++.+ .. ....
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 3688899887 6 4444432 22335578899999843333 2222 257888876543 00 1111
Q ss_pred eccCCCCC-----CceeEEcCCCCEEE-EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE
Q 018144 247 FAENLPGA-----PDNINLAPDGTFWI-AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 320 (360)
Q Consensus 247 ~~~~~~g~-----pd~i~~d~~G~lwv-a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ 320 (360)
+.+...+. +....+.+||..++ .... ......|+.++.+|...
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-------------------------------~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-------------------------------EEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-------------------------------TTSCEEEEEEETTCSSC
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEc-------------------------------CCCceEEEEEECCCCce
Confidence 11111111 34677889997322 2211 01135788888877655
Q ss_pred EEEeCCCCCcccceeeEE-EECCEEEEEeCC------CCeEEEEeC
Q 018144 321 RNLVDPTGQLMSFVTSGL-QVDNHLYVISLT------SNFIGKVQL 359 (360)
Q Consensus 321 ~~~~~~~g~~~~~~t~~~-~~~g~Lylgs~~------~~~i~~~~l 359 (360)
..+...+. .+..+. .+++.||+.+.. ...|.++++
T Consensus 357 ~~lT~g~~----~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 357 TFITKGTW----EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp EESCCSSS----CEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred EecccCCE----EEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 54443221 233332 346777777654 235555544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.053 Score=49.52 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=77.2
Q ss_pred CCcceEEEcC-CCCE-EEEecCCeEEEEE--CCee------------------------eEEEe-c-CC-eEEEEeCCCc
Q 018144 79 NHPEDASMDK-NGVI-YTATRDGWIKRLQ--DGTW------------------------VNWKF-I-DS-HLIICDNANG 127 (360)
Q Consensus 79 ~~Pe~i~~d~-~G~l-~v~~~~G~I~~~~--~g~~------------------------~~~~~-~-~g-~L~v~~~~~g 127 (360)
..-.++++.+ +|.+ .+++.+|.|..++ +++. ..+.. + ++ .|..++.++.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 4556788888 7765 4555889888888 3311 11111 1 33 3444444444
Q ss_pred EEEEc-CCC-eEEEeeccCCccccccccEEEcC---CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 128 LHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 128 l~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~---dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
+..++ .++ ...... .. ..+..+.+.+ ++.+.++ +...+.|..+|..+++....
T Consensus 124 i~iwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 124 LKVWDTNTLQTADVFN-FE----ETVYSHHMSPVSTKHCLVAV-----------------GTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEETTTTEEEEEEE-CS----SCEEEEEECSSCSSCCEEEE-----------------EESSSSEEEEESSSSCCCEE
T ss_pred EEEeeCCCCccceecc-CC----CceeeeEeecCCCCCcEEEE-----------------EcCCCeEEEEeCCCcceeee
Confidence 55566 555 222211 11 1234455554 3434443 22356788888876654433
Q ss_pred eC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 203 AD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 203 ~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.. .......++++++++.++++....+.|..+++..
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 33 3345678999999986555555567788888753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.14 Score=47.64 Aligned_cols=139 Identities=4% Similarity=0.030 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCeEEEEeCC---CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeE-
Q 018144 184 KPHGQLLKYDPSSNITTLVADG---FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN- 259 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~---l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~- 259 (360)
...+.|..+|..+++....... ....+.++++++++.++.+.. .+.|..+++...+ ....+..........++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNV--LIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETTTTE--EEEEEBCTTCEEEEEEEE
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcCCcc--EEEEEecCCCCceEEEEe
Confidence 3467899999887766543332 346788999999986665554 5678888875321 11122101111123342
Q ss_pred ---EcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC------
Q 018144 260 ---LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ------ 329 (360)
Q Consensus 260 ---~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~------ 329 (360)
++++|.+.++... .+.|..+|. +++.+..+....+.
T Consensus 266 ~~~~s~~~~~l~s~~~----------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSS----------------------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp CTTTCTTEEEEEEEST----------------------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred ccccCCCccEEEEEcC----------------------------------CCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 2345644444333 256666775 46766666532210
Q ss_pred ----------------cccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 330 ----------------LMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 330 ----------------~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
....++.+...++.+.+..-....|..+++
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred cccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEEC
Confidence 123366677777776666666778877765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=45.92 Aligned_cols=134 Identities=14% Similarity=0.065 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCe----e-----------eEEEec---CCe-EEEEeCCCcEEEEc-CCC
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----W-----------VNWKFI---DSH-LIICDNANGLHKVS-EDG 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~----~-----------~~~~~~---~g~-L~v~~~~~gl~~~~-~~g 135 (360)
..-.++++.++|. |.+++.+|.|..++ ++. . ..+... ++. |..+..++-+..++ .++
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 4566788888876 45555888888877 221 1 112221 243 44444444455555 332
Q ss_pred -e-------EEEeeccCCccccccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE----
Q 018144 136 -V-------ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---- 201 (360)
Q Consensus 136 -~-------~~l~~~~~~~~~~~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---- 201 (360)
. +.+... .+. ...+..+++.++ |.+.++ +...|.|..+|..+++...
T Consensus 92 ~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~-----------------~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 92 QEECSGRRWNKLCTL-NDS-KGSLYSVKFAPAHLGLKLAC-----------------LGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp SCTTSSCSEEEEEEE-CCC-SSCEEEEEECCGGGCSEEEE-----------------EETTCEEEEEECSSTTCTTCCEE
T ss_pred cccccccCcceeeee-ccc-CCceeEEEEcCCCCCcEEEE-----------------ecCCCcEEEecCCChHHhccccc
Confidence 1 222111 111 134678888888 876554 2235678888865543210
Q ss_pred ---Ee-------CCCcCcceEEEecC---CCEEEEEeCCCCEEE
Q 018144 202 ---VA-------DGFYFANGVALSRD---EDYVVVCESWKFRCR 232 (360)
Q Consensus 202 ---~~-------~~l~~pngia~~~d---g~~l~v~~t~~~~i~ 232 (360)
.. ........++++|+ ++.++++.. .+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~ 195 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQAII 195 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEEEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecC-CCcEE
Confidence 00 11234567889887 776665554 34443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.24 Score=49.73 Aligned_cols=173 Identities=9% Similarity=0.093 Sum_probs=89.0
Q ss_pred eEEEcCCCCE-EEEe-cCC----eEEEEE--CCeeeE------------EEecCCeEEEEeCCCc---------------
Q 018144 83 DASMDKNGVI-YTAT-RDG----WIKRLQ--DGTWVN------------WKFIDSHLIICDNANG--------------- 127 (360)
Q Consensus 83 ~i~~d~~G~l-~v~~-~~G----~I~~~~--~g~~~~------------~~~~~g~L~v~~~~~g--------------- 127 (360)
++++.+||.. .++. .+| .|+.++ +|+... |...+..|+.+.....
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 5677788864 3333 344 688888 554332 1112335666654433
Q ss_pred -EEEEc-CCC-e--EEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCC-----
Q 018144 128 -LHKVS-EDG-V--ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----- 196 (360)
Q Consensus 128 -l~~~~-~~g-~--~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t----- 196 (360)
++.++ .++ . ..+....... .+..++.+++||+ |.++-... ......|+.+|.++
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~--~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEP--KWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCT--TCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSSS
T ss_pred EEEEEECCCCcccceEEeccCCCC--eEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECccccccc
Confidence 66666 444 2 2222211111 1345778899996 44432110 01135788888765
Q ss_pred -C--eEEEEeCCCcCcceEEEecCCCEEEEEeCC---CCEEEEEEecCCcCcceeeeccCCC-CCCceeEEcCCCCEEEE
Q 018144 197 -N--ITTLVADGFYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIA 269 (360)
Q Consensus 197 -g--~~~~~~~~l~~pngia~~~dg~~l~v~~t~---~~~i~~~~~~g~~~~~~~~~~~~~~-g~pd~i~~d~~G~lwva 269 (360)
+ ..+.+...... ....+++||+.+|+.... ..+|+++++++......+.+..... ....++.+.+++.+++.
T Consensus 274 ~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 274 TGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred CCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 4 35555433222 223578899888887653 3479999986542212233322211 12345566656666665
Q ss_pred Ee
Q 018144 270 II 271 (360)
Q Consensus 270 ~~ 271 (360)
..
T Consensus 353 ~~ 354 (710)
T 2xdw_A 353 YL 354 (710)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.022 Score=57.87 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=91.1
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCee-------------eEEEe-cC--C-eEEEEeCCCcEEEEc-CCC-eE
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-------------VNWKF-ID--S-HLIICDNANGLHKVS-EDG-VE 137 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-------------~~~~~-~~--g-~L~v~~~~~gl~~~~-~~g-~~ 137 (360)
.-.++++.++|. |.+++.+|.|..++ ++.. ..+.. .+ + .|..+..++-+..++ .++ ..
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 90 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence 344566666664 55666888877776 2321 12222 12 3 344555444455566 445 32
Q ss_pred EEeeccCCccccccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe---EEEEeCCCcCcceE
Q 018144 138 NFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGV 212 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~---~~~~~~~l~~pngi 212 (360)
..... .+. ...+..+++.++ |.+.++ +...|.|..+|..++. ...+.........+
T Consensus 91 ~~~~~-~~h-~~~V~~v~~sp~~~~~~l~s-----------------gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 91 QIAVH-AVH-SASVNSVQWAPHEYGPLLLV-----------------ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp EEEEE-CCC-SSCEEEEEECCGGGCSEEEE-----------------EETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred ccccc-cCC-CCCeEEEEECCCCCCCEEEE-----------------EeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 22211 111 134678888888 876665 3345778888876552 12222233456778
Q ss_pred EEec-------------CCCEEEEEeCCCCEEEEEEecCCcCc-ceeeeccCCCCCCceeEEcCC---CCEEEEEe
Q 018144 213 ALSR-------------DEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAII 271 (360)
Q Consensus 213 a~~~-------------dg~~l~v~~t~~~~i~~~~~~g~~~~-~~~~~~~~~~g~pd~i~~d~~---G~lwva~~ 271 (360)
+++| |++.++.+. ..+.|..+++...... ..........+....+++.++ |++.++..
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp EECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred EecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 8888 476555555 4567888887643211 111111122334556778887 66555443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.02 Score=52.81 Aligned_cols=133 Identities=10% Similarity=0.051 Sum_probs=72.3
Q ss_pred eEEEEeCCCcEEEEc-CC---CeEEEeeccCCccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 118 HLIICDNANGLHKVS-ED---GVENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 118 ~L~v~~~~~gl~~~~-~~---g~~~l~~~~~~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.|..+..++.+..++ .+ +.+.+.. ..+. ...+..+++.++ +++.++- ...+.|..+
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~~l~s~-----------------~~dg~v~iw 141 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNAINSMAR-FSNH-SSSVKTVKFNAKQDNVLASG-----------------GNNGEIFIW 141 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSCCCEEEE-CCCS-SSCCCEEEECSSSTTBEEEE-----------------CSSSCEEBC
T ss_pred eEEEEccCCeEEEeecccccccccchhh-ccCC-ccceEEEEEcCCCCCEEEEE-----------------cCCCeEEEE
Confidence 455555555566666 43 2111111 1111 135788999987 6766652 235678888
Q ss_pred cCCCCe------EEEEe----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCC-----CCCCce
Q 018144 193 DPSSNI------TTLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL-----PGAPDN 257 (360)
Q Consensus 193 d~~tg~------~~~~~----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~-----~g~pd~ 257 (360)
|..+++ ..... ........+++++++..++++....+.|..++++..+ ....+.... ......
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEE
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEE
Confidence 877664 21111 1223567899999943355565556779989876432 111221111 234566
Q ss_pred eEEcCCC-CEEEEEe
Q 018144 258 INLAPDG-TFWIAII 271 (360)
Q Consensus 258 i~~d~~G-~lwva~~ 271 (360)
+++.++| ++.++..
T Consensus 220 ~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 220 VEWHPKNSTRVATAT 234 (416)
T ss_dssp EEECSSCTTEEEEEE
T ss_pred EEECCCCCCEEEEEE
Confidence 8888887 4444433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.14 Score=45.78 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=90.4
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE--CCeee-EEE----------e-cCCe-EEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-NWK----------F-IDSH-LIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~-~~~----------~-~~g~-L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
.-.++++.++|... .++.+|.|..++ +++.. .+. . +++. |..+..++-+..++ +.. ...+..
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 146 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 44567888887654 555889888888 55422 121 1 2333 33444344444555 333 333311
Q ss_pred ccCCccccccccEEEcC------CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEE
Q 018144 142 YVNGSKLRFANDVVEAS------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL 214 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~------dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~ 214 (360)
. . ..+..+.+.+ ++...++ +...+.|..+|..+++......+ ....+.+++
T Consensus 147 h-~----~~v~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 147 H-N----DWVSQVRVVPNEKADDDSVTIIS-----------------AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204 (319)
T ss_dssp C-S----SCEEEEEECCC------CCEEEE-----------------EETTSCEEEEETTTTEEEEEECCCCSCEEEEEE
T ss_pred c-C----CcEEEEEEccCCCCCCCccEEEE-----------------EeCCCEEEEEECCcchhheeecCCCCcEEEEEE
Confidence 1 1 1234455544 3334443 23356788888877765543333 345678999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|||+.+..+. ..+.|..+++...+ ....+. .......+++.++|.+.++...
T Consensus 205 sp~g~~l~s~~-~dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 205 SPDGTLIASAG-KDGEIMLWNLAAKK--AMYTLS--AQDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp CTTSSEEEEEE-TTCEEEEEETTTTE--EEEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred cCCCCEEEEEe-CCCeEEEEECCCCc--EEEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence 99998555444 45778888875432 111221 1223566888999876655443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.071 Score=53.65 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E--------------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeec
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N--------------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~--------------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~ 142 (360)
+|.||+++.++.|+.+| +|+.. . ....+++||+++.+..++.+| .+| ...-...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 78999999889999999 67421 0 112367899998777899999 788 3322221
Q ss_pred c-CCcc-ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 143 V-NGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 143 ~-~~~~-~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
. +... ......-.+ .+|.+|+..+...+ ...|.|+.+|.+||+...
T Consensus 150 ~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 150 RADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp CSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred cCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEEE
Confidence 1 1100 000111122 26789886433111 135789999999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.2 Score=46.81 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 185 PHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
..|.|..+|..+++......+ ......+++ +++.++.+.. .+.|..+++...+ ....+. ........+.. +
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~--~ 328 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVETGN--CIHTLT-GHQSLTSGMEL--K 328 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETTTCC--EEEEEC-CCCSCEEEEEE--E
T ss_pred CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECCCCC--EEEEEc-CCcccEEEEEE--e
Confidence 356788888776665443332 223345555 7776666654 5678888875422 112221 12222333444 3
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECC
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN 342 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g 342 (360)
|++.++... .+.|..+|. +++.+..+..+.+. ...++++..++.
T Consensus 329 ~~~l~~~~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 373 (445)
T 2ovr_B 329 DNILVSGNA----------------------------------DSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKN 373 (445)
T ss_dssp TTEEEEEET----------------------------------TSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSS
T ss_pred CCEEEEEeC----------------------------------CCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEECCC
Confidence 444444333 246666774 67777777654322 235666666656
Q ss_pred EEEEEeCCCCeEEEEeC
Q 018144 343 HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 343 ~Lylgs~~~~~i~~~~l 359 (360)
.|..|+. ...|..+++
T Consensus 374 ~l~s~~~-dg~v~iwd~ 389 (445)
T 2ovr_B 374 FVITSSD-DGTVKLWDL 389 (445)
T ss_dssp EEEEEET-TSEEEEEET
T ss_pred EEEEEeC-CCeEEEEEC
Confidence 6665553 455665554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.035 Score=55.67 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=61.1
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE-----------------------ecCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK-----------------------FIDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~-----------------------~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
+|.||+++.+|.|+.+| +|+.. |. ..++++|+++.+..++.+| .+| ...-..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhc-eEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 78999999999999999 67532 21 1357899998777899999 788 332222
Q ss_pred ccCC-ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 142 YVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 142 ~~~~-~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
.... ..........+ .+|.+|+......+ ...|.|+.+|.+||+...
T Consensus 145 ~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRV-VKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp CSCTTSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred cCCCCCcceecCCCEE-ECCEEEEeCCCCCc------------CCCCEEEEEECCCCcEEE
Confidence 1111 00011111123 26789986433111 124789999999898754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.044 Score=50.00 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=50.8
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEec-CCCEEEEEeCCC-----CEEEEEEecCCcCcceeeeccCCCC-CCce
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPG-APDN 257 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~-dg~~l~v~~t~~-----~~i~~~~~~g~~~~~~~~~~~~~~g-~pd~ 257 (360)
....|+.+|.++++...+.........++++| |++.++++.... .+|+.++.++... ..+....++ .+..
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTH 242 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccc
Confidence 34679999998888776654444567889999 777555544322 4789998865321 222211111 2344
Q ss_pred eEEcCCCC-EEEEE
Q 018144 258 INLAPDGT-FWIAI 270 (360)
Q Consensus 258 i~~d~~G~-lwva~ 270 (360)
+.++++|+ |+++.
T Consensus 243 ~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 243 EFWIPDGSAMAYVS 256 (396)
T ss_dssp EEECTTSSCEEEEE
T ss_pred eEECCCCCEEEEEe
Confidence 67889986 55443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.27 Score=48.06 Aligned_cols=99 Identities=7% Similarity=-0.039 Sum_probs=58.6
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--------EEEEeCC----CcCcceEEEecC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--------TTLVADG----FYFANGVALSRD 217 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--------~~~~~~~----l~~pngia~~~d 217 (360)
.+..+++.+||.+.++ +...|.|..+|..++. +..+... ......++++||
T Consensus 131 sv~svafSPDG~~LAs-----------------gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 131 TYHCFEWNPIESSIVV-----------------GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp CEEEEEECSSSSCEEE-----------------EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred cEEEEEEcCCCCEEEE-----------------EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 4778999999975553 3346788889988764 2333211 235678999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcc-eeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
| + ++....+.+..+++++....+ ...+..........+++. |+..++.
T Consensus 194 g--L-aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa 242 (588)
T 2j04_A 194 V--L-VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT 242 (588)
T ss_dssp E--E-EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE
T ss_pred c--E-EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEE
Confidence 8 4 344446778888887654321 112211111235667776 4544444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.14 Score=51.36 Aligned_cols=101 Identities=11% Similarity=-0.036 Sum_probs=60.1
Q ss_pred cccEEEcCCCc-EEEE-eCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vt-d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..++.+++||+ |.++ +.+ +.....|+.+|.++|+.......-....+++++|||+.++++....
T Consensus 127 ~~~~~~SPDg~~la~~~~~~--------------G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSAS--------------GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp EEEEEECTTSSEEEEEEEET--------------TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEEcCC--------------CCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECC
Confidence 45678899996 4333 211 1122378999998888754322112246799999999888876432
Q ss_pred ---------------CEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC
Q 018144 229 ---------------FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT 265 (360)
Q Consensus 229 ---------------~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~ 265 (360)
..|+++++.+.......++... .+....++.+++||+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~ 245 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC
Confidence 3488888764332222333221 122334678899997
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.22 Score=46.46 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc--CCCCCCceeEE
Q 018144 184 KPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINL 260 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--~~~g~pd~i~~ 260 (360)
...+.|..+|..+++......+ ......+ ..+++.++.+. ..+.|..+++...+ ....+.. ...+....+.+
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGN-ADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCSCEEEE--EEETTEEEEEE-TTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcccEEEE--EEeCCEEEEEe-CCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEE
Confidence 3456788888877765443332 1223334 44566555554 45678888875321 1222211 01222334555
Q ss_pred cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCC-CCCcccceeeEE
Q 018144 261 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP-TGQLMSFVTSGL 338 (360)
Q Consensus 261 d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~-~g~~~~~~t~~~ 338 (360)
+ +++.++... .+.|..++. +|+.+..+... .+.....+.++.
T Consensus 371 ~--~~~l~s~~~----------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 371 N--KNFVITSSD----------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp C--SSEEEEEET----------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred C--CCEEEEEeC----------------------------------CCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 4 555444433 257777774 67877777322 122234567777
Q ss_pred EEC-CE-EEEEeCCCC---eEEEEeCC
Q 018144 339 QVD-NH-LYVISLTSN---FIGKVQLS 360 (360)
Q Consensus 339 ~~~-g~-Lylgs~~~~---~i~~~~l~ 360 (360)
... +. |..|+..+. +|.+++++
T Consensus 415 ~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 415 ASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp ECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ecCCEEEEEEcccCCCCccEEEEEECC
Confidence 765 33 344444443 57777753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.14 Score=45.88 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=43.5
Q ss_pred CCcceEEEcCC---C-CEEEEecCCeEEEEE--C-Ceee--EE----------Ee-cCC-eEEEEeCCCcEEEEc-CCC-
Q 018144 79 NHPEDASMDKN---G-VIYTATRDGWIKRLQ--D-GTWV--NW----------KF-IDS-HLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~---G-~l~v~~~~G~I~~~~--~-g~~~--~~----------~~-~~g-~L~v~~~~~gl~~~~-~~g- 135 (360)
..-.++++.++ | .|.+++.+|.|..++ + +... .+ .. +++ .|+.++.++.+..++ .++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence 45577888887 3 456666889888887 3 4321 11 11 234 355555555566666 555
Q ss_pred eEEEeeccCCccccccccEEE--cCCCcEEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVE--ASDGSLYFT 165 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~--d~dG~l~vt 165 (360)
...+.. .. ..+..+.+ +++|.+.++
T Consensus 120 ~~~~~~-~~----~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 120 AIQIAQ-HD----APVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp EEEEEE-CS----SCEEEEEEEECSSCEEEEE
T ss_pred ceeecc-cc----CceEEEEEEeCCCCCEEEE
Confidence 333221 11 23455565 566654443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.99 E-value=0.17 Score=44.78 Aligned_cols=170 Identities=10% Similarity=0.057 Sum_probs=90.8
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCeeeEE------------Eec-CCeEEEEeCCCcEEEEc-CCCeEEEee
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNW------------KFI-DSHLIICDNANGLHKVS-EDGVENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~~~------------~~~-~g~L~v~~~~~gl~~~~-~~g~~~l~~ 141 (360)
....++++.++|.+. .++.+|.|..++ .+..... ... +..|..+..++.+..++ .........
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 455678888888654 555888888777 3321111 111 23344454444455555 222211111
Q ss_pred ccCCccccccccEEEcCCC--cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCC
Q 018144 142 YVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 218 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG--~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg 218 (360)
..+. ...+..+++..++ .+.++- ...+.|..+|..+++......+ ....+.++++||+
T Consensus 167 -~~~~-~~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 167 -DESH-SEWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp -SSSC-SSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred -eccc-cCcccceEEccCCCCcEEEEE-----------------cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC
Confidence 1111 1234455555443 345542 2345677888877776554433 3345789999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.++.+. ..+.|..+++...+ ....+. .......+.+.+++.+..+...
T Consensus 228 ~~l~s~s-~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 228 SLCASGG-KDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAATG 276 (340)
T ss_dssp SEEEEEE-TTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEET
T ss_pred CEEEEEe-CCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccCC
Confidence 8665554 45788888875421 112221 1223455667777777766554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.19 Score=45.20 Aligned_cols=131 Identities=19% Similarity=0.061 Sum_probs=75.4
Q ss_pred CCeEEE-EeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLII-CDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v-~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
++.+++ ++.++.+..++ .++ ......... ...+..+++.++|.+.++ +...|.|..+
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~las-----------------g~~dg~i~iw 197 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLLLAL-----------------YSPDGILDVY 197 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCS---SCCCCEEEECTTSCEEEE-----------------ECTTSCEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC---CCceEEEEECCCCCEEEE-----------------EcCCCEEEEE
Confidence 344444 55445566666 555 322211111 124778999999988775 3346788889
Q ss_pred cCCCCeEE--EEeC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCc---eeEEcCCCC
Q 018144 193 DPSSNITT--LVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPD---NINLAPDGT 265 (360)
Q Consensus 193 d~~tg~~~--~~~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd---~i~~d~~G~ 265 (360)
|..+++.. .+.. .....+.+++++++..|..+. . +.|..+|+...+. ...+.+.. ...+- .++++++|.
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSS
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeeccccc--ccccccceEEEECCCCC
Confidence 98777643 2322 234567899999998776666 3 3788888764321 11111110 11222 388999998
Q ss_pred EEEEE
Q 018144 266 FWIAI 270 (360)
Q Consensus 266 lwva~ 270 (360)
+.++.
T Consensus 274 ~l~~~ 278 (343)
T 3lrv_A 274 NMIAY 278 (343)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.021 Score=60.36 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=97.6
Q ss_pred CcceEEEc-CCCC-EEEEecCCeEEEEE--CCeeeEE-----------EecCC-eEEEEeCCCcEE-EEc-CCC-eEEEe
Q 018144 80 HPEDASMD-KNGV-IYTATRDGWIKRLQ--DGTWVNW-----------KFIDS-HLIICDNANGLH-KVS-EDG-VENFL 140 (360)
Q Consensus 80 ~Pe~i~~d-~~G~-l~v~~~~G~I~~~~--~g~~~~~-----------~~~~g-~L~v~~~~~gl~-~~~-~~g-~~~l~ 140 (360)
...++++. ++|. |.++. ++.|+.++ +++...+ ...+| .|+.+.....++ .++ .++ .+.+.
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~ 375 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE 375 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec
Confidence 36788898 8886 44444 67788777 3432221 11122 355544445677 667 445 44432
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~ 219 (360)
. . ...+..+++++||+..++- ...+.|+.+|.++++...+..+ ......++++|||+
T Consensus 376 -~-~---~~~~~~~~~SpDG~~la~~-----------------~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 376 -E-N---LGNVFAMGVDRNGKFAVVA-----------------NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp -C-C---CCSEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred -C-C---ccceeeeEECCCCCEEEEE-----------------CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence 1 1 1346788999999744421 1235799999988888766533 33447899999999
Q ss_pred EEEEEeCCC---------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 220 YVVVCESWK---------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 220 ~l~v~~t~~---------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.+.++.... ..|+.+++++.+ ...+.. .......+.++++|. |+++..
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~-~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATT-ENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSC-SSSBEEEEEECTTSCEEEEEES
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeC-CCcccCCceEcCCCCEEEEEec
Confidence 776665422 478888876532 222221 111234577888886 555543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.25 Score=46.27 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 184 KPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
...+.|..+|..+++......+ ......++++++++.++.+.. .+.|..+++..
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~ 341 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDLEN 341 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-TSCEEEEETTT
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Confidence 3457788899877766544332 345678999999986666554 56788888753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.2 Score=45.19 Aligned_cols=212 Identities=8% Similarity=0.045 Sum_probs=109.2
Q ss_pred ceEEEcCCCCEEEEecCCeEEEEE-CCe-ee-------------EEE-ecCCeEEEEeCCCcEEEEcCCC--eEEEeecc
Q 018144 82 EDASMDKNGVIYTATRDGWIKRLQ-DGT-WV-------------NWK-FIDSHLIICDNANGLHKVSEDG--VENFLSYV 143 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~G~I~~~~-~g~-~~-------------~~~-~~~g~L~v~~~~~gl~~~~~~g--~~~l~~~~ 143 (360)
.+|++++ +.+|+....|.|++-. .|+ ++ .+. ..++++|++....++++-...| .+.+....
T Consensus 83 ~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 83 NSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEA 161 (327)
T ss_dssp EEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSC
T ss_pred EEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCC
Confidence 3567764 6788877778888865 331 11 111 2457788776544555544444 44443221
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC-CCeEEEEeCC-CcCcceEEEecCCCEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG-FYFANGVALSRDEDYV 221 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg~~~~~~~~-l~~pngia~~~dg~~l 221 (360)
. ..+.+++++++|.+|+.. ..|.+++-+.. ....+.+... -.....++++++++ +
T Consensus 162 ~----~~~~~~~~~~~~~~~~~g------------------~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~ 218 (327)
T 2xbg_A 162 I----GVMRNLNRSPSGEYVAVS------------------SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-L 218 (327)
T ss_dssp C----CCEEEEEECTTSCEEEEE------------------TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-E
T ss_pred C----cceEEEEEcCCCcEEEEE------------------CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-E
Confidence 1 235677888888888742 13456665432 1233333221 22345777888887 5
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccC-CCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
|++.. .+.+++...++.+ +.+..... ++. ....+..++++.+|++...
T Consensus 219 ~~~~~-~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------------------------- 269 (327)
T 2xbg_A 219 WMIVN-GGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------------------------- 269 (327)
T ss_dssp EEEET-TTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--------------------------
T ss_pred EEEeC-CceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCC--------------------------
Confidence 55554 3456554333211 11111100 111 1124556778899997654
Q ss_pred cccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCCeEEEE
Q 018144 299 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKV 357 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~~i~~~ 357 (360)
+.+++-...|+.-..+..+.+. ...+..+.. .++.+|+.+..+ .|.++
T Consensus 270 ---------g~i~~S~DgG~tW~~~~~~~~~-~~~~~~v~~~~~~~~~~~G~~G-~i~~~ 318 (327)
T 2xbg_A 270 ---------GALLCSQDGGQTWQQDVDVKKV-PSNFYKILFFSPDQGFILGQKG-ILLRY 318 (327)
T ss_dssp ---------TCEEEESSTTSSCEECGGGTTS-SSCCCEEEEEETTEEEEECSTT-EEEEE
T ss_pred ---------CeEEEeCCCCcccEEcCccCCC-CCCeEEEEEECCCceEEEcCCc-eEEEE
Confidence 3465544456654444322111 112344444 468888887654 55554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.12 Score=51.75 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=93.1
Q ss_pred CcceEEEcCCCC-EEEEecC---------CeEEEEE--CCeeeEEE--------------ecCC-eEEEEeCCCcEEEEc
Q 018144 80 HPEDASMDKNGV-IYTATRD---------GWIKRLQ--DGTWVNWK--------------FIDS-HLIICDNANGLHKVS 132 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~---------G~I~~~~--~g~~~~~~--------------~~~g-~L~v~~~~~gl~~~~ 132 (360)
...++++.+||. |.++..+ +.|+.++ +|+...+. .++| .|..+. .+.++.++
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE-CCeEEEEE
Confidence 377899999997 4444432 6777887 45432221 1234 344433 35688888
Q ss_pred -CCC-eEEEeec-cCCc-------------cccccccEEEcCCCc-EEEEeCCCCCCCccceec------------c-c-
Q 018144 133 -EDG-VENFLSY-VNGS-------------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLD------------I-L- 181 (360)
Q Consensus 133 -~~g-~~~l~~~-~~~~-------------~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~------------~-~- 181 (360)
.+| ...+... ..+. .+.....+++++||+ |.++.... -....+... + +
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccCC
Confidence 556 4444322 1110 011235789999996 54442110 000000000 0 0
Q ss_pred -cc--CCccEEEEEcCCCCeE-EEEeCC------CcCcceEEEecCCCEEEEEe-CC--CCEEEEEEecCCcCcceeeec
Q 018144 182 -EG--KPHGQLLKYDPSSNIT-TLVADG------FYFANGVALSRDEDYVVVCE-SW--KFRCRKYWLKGERKGKLETFA 248 (360)
Q Consensus 182 -~~--~~~g~l~~~d~~tg~~-~~~~~~------l~~pngia~~~dg~~l~v~~-t~--~~~i~~~~~~g~~~~~~~~~~ 248 (360)
.+ .....|+.+|..+++. ..+... ......++++|||+.++... .. ...|+.+++++.+.. ..+.
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~--~~~~ 297 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKHE 297 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce--EEEE
Confidence 00 1123788999887764 333221 12345689999998664442 21 235777787543221 1111
Q ss_pred cCCCCC----CceeEEcCCCC-EEEE
Q 018144 249 ENLPGA----PDNINLAPDGT-FWIA 269 (360)
Q Consensus 249 ~~~~g~----pd~i~~d~~G~-lwva 269 (360)
....+. +..+++.+||+ |++.
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eccCCEEeccCCCceEcCCCCeEEEE
Confidence 111121 24678888886 4443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.054 Score=48.29 Aligned_cols=99 Identities=8% Similarity=0.039 Sum_probs=62.8
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcC-CCCeEEEEeC--CCcCcceEEEecCCCEEEEEe
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNITTLVAD--GFYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~tg~~~~~~~--~l~~pngia~~~dg~~l~v~~ 225 (360)
.+..+++.++|+ ..++ +...|.|..+|. .+++...+.. .......+++++ ++.++.+.
T Consensus 58 ~v~~~~~~~~~~~~l~~-----------------~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~ 119 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYV-----------------GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAAS 119 (342)
T ss_dssp CEEEEEEEESSSEEEEE-----------------EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE
T ss_pred ceEEEEECCCCCcEEEE-----------------EcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEc
Confidence 467888999898 5554 233578999998 8787765544 444567899999 77565555
Q ss_pred CCCCEEEEEEecC---------CcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 226 SWKFRCRKYWLKG---------ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 226 t~~~~i~~~~~~g---------~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..+.|..+++.. .+. ...+ ...+.+..+.+++++ +.++...
T Consensus 120 -~d~~i~iwd~~~~~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~-l~~~~~d 169 (342)
T 1yfq_A 120 -WDGLIEVIDPRNYGDGVIAVKNLN--SNNT--KVKNKIFTMDTNSSR-LIVGMNN 169 (342)
T ss_dssp -TTSEEEEECHHHHTTBCEEEEESC--SSSS--SSCCCEEEEEECSSE-EEEEEST
T ss_pred -CCCeEEEEcccccccccccccCCe--eeEE--eeCCceEEEEecCCc-EEEEeCC
Confidence 457788887653 110 1111 133345667777776 6666544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.17 Score=45.48 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=46.8
Q ss_pred ccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecC--CCEEE
Q 018144 150 FANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRD--EDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~d--g~~l~ 222 (360)
.+..+++.++ |++.++ +..+|.|..+|..+++... +.........++++++ ++.++
T Consensus 57 ~v~~~~~~~~~~~~~l~s-----------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILAS-----------------CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp CEEEEEECCGGGCSEEEE-----------------EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred cEEEEEeCCCCCCCEEEE-----------------eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEE
Confidence 4667787755 776664 2235677778877675322 2223345678999998 87666
Q ss_pred EEeCCCCEEEEEEecCC
Q 018144 223 VCESWKFRCRKYWLKGE 239 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~ 239 (360)
++. ..+.|..+++...
T Consensus 120 ~~~-~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 120 VAS-SDGKVSVVEFKEN 135 (379)
T ss_dssp EEE-TTSEEEEEECCTT
T ss_pred Eec-CCCcEEEEecCCC
Confidence 555 4578998988653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.16 Score=50.93 Aligned_cols=105 Identities=15% Similarity=0.001 Sum_probs=60.2
Q ss_pred cccEEEcCCCc-EEE-EeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc--ceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGS-LYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~-l~v-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p--ngia~~~dg~~l~v~~t 226 (360)
..++.+++||+ |.+ .+.+ +.....|+.+|.++|+... ...+... .++++++||+.++.+..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~--------------G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~ 187 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPN--------------AADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWL 187 (695)
T ss_dssp EEEEEECTTSSEEEEEEEET--------------TCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCC--------------CCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEe
Confidence 45678889996 333 2211 2223578999998887530 1112222 68999999998877765
Q ss_pred C------------CCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC-EEEEE
Q 018144 227 W------------KFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 227 ~------------~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~ 270 (360)
. ...|+++++.+.......++... .+....++.+++||. |.++.
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 2 23488888765432222333211 112234677899996 44443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.22 Score=46.10 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=81.0
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEEE-C-Ce-ee------------------EEEe-cCC-e-EEEEeCCCcEEEEc-
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-D-GT-WV------------------NWKF-IDS-H-LIICDNANGLHKVS- 132 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~-g~-~~------------------~~~~-~~g-~-L~v~~~~~gl~~~~- 132 (360)
-....++++.++|.+.++..+|.|..++ . +. .. .+.. +++ . |..+..++.+..++
T Consensus 177 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp SSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 3456788999988877666788888888 4 21 11 1111 233 3 44555444566666
Q ss_pred CCC-e-----EEEeeccCCcc-------ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-Ce
Q 018144 133 EDG-V-----ENFLSYVNGSK-------LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI 198 (360)
Q Consensus 133 ~~g-~-----~~l~~~~~~~~-------~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~ 198 (360)
.++ . ..+........ ...+..++++++|.+.++ +.. +.|..+|..+ ++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-----------------~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT-----------------RDY-LSVKVWDLNMENR 318 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE-----------------EES-SEEEEEETTCCSS
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE-----------------eeC-CeEEEEeCCCCcc
Confidence 444 3 22211100000 015778999999987775 223 6788888764 43
Q ss_pred EEEEeCCCcC----------------cceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 199 TTLVADGFYF----------------ANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 199 ~~~~~~~l~~----------------pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
.......... ...+++++|++.+ ++.+..+.|..++.+..
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred ccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence 2211111111 1238999999866 55556778988987643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.22 Score=44.00 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=87.0
Q ss_pred ceEEEcCCCC-EEEEecCCeEEEEE--CCee-eEE----------Ee-cCCe-EEEEeCCCcEEEEc-CCC--eEEEeec
Q 018144 82 EDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNW----------KF-IDSH-LIICDNANGLHKVS-EDG--VENFLSY 142 (360)
Q Consensus 82 e~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-~~~----------~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~l~~~ 142 (360)
.++++.+++. |.+++.+|.|..++ +++. ..+ .. +++. |..+..++-+..++ .++ ......
T Consensus 59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~- 137 (304)
T 2ynn_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE- 137 (304)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-
Confidence 4566766665 45566888888888 4432 111 11 2333 44444444455556 444 221111
Q ss_pred cCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCC-CcCcceEEEec--C
Q 018144 143 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-FYFANGVALSR--D 217 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~-l~~pngia~~~--d 217 (360)
+. ...+..+++.+ ++.+.++ +...+.|..+|..+++... +..+ ....+.+++.+ +
T Consensus 138 --~h-~~~v~~v~~~p~~~~~l~s-----------------gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 138 --GH-EHFVMCVAFNPKDPSTFAS-----------------GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp --CC-CSCEEEEEECTTCTTEEEE-----------------EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred --cc-CCcEEEEEECCCCCCEEEE-----------------EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence 11 13467888887 5666665 2345678888875443221 2222 22345566665 6
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+..++ +.+..+.|..+++...+ ....+. ........+++.+++.+.++...
T Consensus 198 ~~~l~-s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 198 KPYMI-TASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp CCEEE-EEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred CCEEE-EEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcC
Confidence 66444 44456788888875321 112221 12223445778888886665443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.13 Score=46.13 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=61.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
+..+.+++||+ |.++... .......|+.+|.++++...+..... ...++++|||+.++++...
T Consensus 61 ~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~ 126 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRR 126 (347)
T ss_dssp CEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCC
T ss_pred CCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCC
Confidence 45678899995 5553211 00123469999988887766543333 7789999999988777532
Q ss_pred ------------------------CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 228 ------------------------KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 228 ------------------------~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
...|+++++++.+. ...+.. + ....+.+.++| +.+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~--~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK--P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp C---------CCCC---------CEEEEEEEETTTTEE--EEEEEE--E-TTCEEEEETTE-EEEEE
T ss_pred CcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC--C-CcccccCCCCe-EEEEE
Confidence 24688888765332 022222 2 35677888888 55544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.091 Score=54.61 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=98.5
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE-C-Ce----------eeEEEecCCe-EEEEeCCCcEEEEc-CCC--eEEEee
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ-D-GT----------WVNWKFIDSH-LIICDNANGLHKVS-EDG--VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~-~-g~----------~~~~~~~~g~-L~v~~~~~gl~~~~-~~g--~~~l~~ 141 (360)
....+++++++|.+. +|+.+|.|..++ . ++ +..+.+..|+ |..++.++.+...+ .++ +..+.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 467889999988755 555889888877 3 22 2222322354 55555555566667 555 33332
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-----------C-CCcCc
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----------D-GFYFA 209 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-----------~-~l~~p 209 (360)
.. ..+..++++++|+..++ +...|.|..+|..+++...+. . .....
T Consensus 97 -~~----~~V~~v~~sp~g~~l~s-----------------gs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 97 -VP----GKITSIDTDASLDWMLI-----------------GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp -CS----SCEEEEECCTTCSEEEE-----------------EETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred -CC----CCEEEEEECCCCCEEEE-----------------EcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 11 24678889999975553 334577888998877653211 1 12346
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-----------------CCCCCceeEEcCCCCEEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----------------LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-----------------~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..++++|++..++++....+.| .++++..+. ...+... .......+++.++|++.++...
T Consensus 155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 7899999753355555566777 888754321 1122111 0122456778899986665544
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.017 Score=56.17 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=72.1
Q ss_pred CcceEEEecCCCEEEEEeCCC---------------------CEEEEEEecCCc----Ccceeeecc-------------
Q 018144 208 FANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGER----KGKLETFAE------------- 249 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~---------------------~~i~~~~~~g~~----~~~~~~~~~------------- 249 (360)
.|-+++++|....+|++-|++ +.|+++..++.. ..+.+++..
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 466889988555599987642 578998875421 111233321
Q ss_pred --------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEE
Q 018144 250 --------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTII 320 (360)
Q Consensus 250 --------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~ 320 (360)
..-..|||+++|++|+||+++-..... .. .........|+++++ .|++.
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~------------------~g----~~~~~gnn~v~~~dp~tGel~ 522 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSN------------------AG----DFAGMGNNQMLCADPATGEIR 522 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCC------------------SG----GGTTCCSCEEEEECTTTCCEE
T ss_pred CccCccccCccCCCCceEECCCCCEEEEeCCCcCc------------------cc----cccccCCceEEEEeCCCCeEE
Confidence 011359999999999999966542100 00 000112358999998 57877
Q ss_pred EEEeCCCCCcccceeeEEEE--CCEEEEEe
Q 018144 321 RNLVDPTGQLMSFVTSGLQV--DNHLYVIS 348 (360)
Q Consensus 321 ~~~~~~~g~~~~~~t~~~~~--~g~Lylgs 348 (360)
..+..|.+ ..++++.+. +..||+.-
T Consensus 523 ~fl~~P~~---aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 523 RFMVGPIG---CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEECCTT---CEEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCC---ccccCCEECCCCCEEEEEE
Confidence 77766665 367888886 36899874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.18 Score=46.77 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=79.1
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE-C----Ceee---------EEEe-----------------cCCe-EEEEeCC
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ-D----GTWV---------NWKF-----------------IDSH-LIICDNA 125 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~----g~~~---------~~~~-----------------~~g~-L~v~~~~ 125 (360)
....++++.+++. |.+++.+|.|..++ . ++.. .+.. .++. |+.++.+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 3456788888775 55566888776665 2 2111 1110 1233 4455555
Q ss_pred CcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 126 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 126 ~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
+.+..++ .++ ...+.... ....+..++++++|...++ +...|.|..+|..+++....
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s-----------------~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLIL-----------------GTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEE-----------------EETTSCEEEEETTTTEEEEE
T ss_pred CeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEE-----------------EcCCCeEEEEEcCCccEEEE
Confidence 5566677 555 33332210 1135788999999987665 23356788899877766443
Q ss_pred e--CCCcCcceEEEe----cCCCEEEEEeCCCCEEEEEEecC
Q 018144 203 A--DGFYFANGVALS----RDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 203 ~--~~l~~pngia~~----~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
. ........++++ +++. ++++.+..+.|..+++..
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred EecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence 2 222234567554 4554 555555566788888753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.3 Score=45.46 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=31.1
Q ss_pred CCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 184 KPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
...|.|..+|..+++......+ ......+++ +++.++.+. ..+.|..+++..
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~iwd~~~ 325 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIEC 325 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEEEETTT
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEEEECCC
Confidence 3457888899887765443322 223344555 456555554 456788888753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.42 Score=47.91 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=46.3
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCC--eEEEEeCCCcCcceEEEecCCCEEEEEeCC-
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVCESW- 227 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg--~~~~~~~~l~~pngia~~~dg~~l~v~~t~- 227 (360)
.++.+++||+ |+++-.. ....+.|+.+|.+++ +.+.+......-.. .++++|+.+|+....
T Consensus 237 ~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRD 301 (693)
T ss_dssp EEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred EEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCC
Confidence 4567889996 5554322 112347888887655 45555433222112 267777777776543
Q ss_pred --CCEEEEEEecCCcCcceeee
Q 018144 228 --KFRCRKYWLKGERKGKLETF 247 (360)
Q Consensus 228 --~~~i~~~~~~g~~~~~~~~~ 247 (360)
+.+|+++++++......+.+
T Consensus 302 ~~~~~l~~~d~~~~~~~~~~~l 323 (693)
T 3iuj_A 302 APNRRLVTVDAANPGPAHWRDL 323 (693)
T ss_dssp CTTCEEEEEETTSCCGGGCEEE
T ss_pred CCCCEEEEEeCCCCCccccEEE
Confidence 36899999876443333333
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.006 Score=55.76 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=56.5
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----EEEEeCCCcCcceEEEecCCCEEEEEe
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADGFYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----~~~~~~~l~~pngia~~~dg~~l~v~~ 225 (360)
.+..+++.++|++.++- ...+.|..+|..+++ ...+.........++++++++.++.+.
T Consensus 57 ~v~~~~~s~~~~~l~s~-----------------s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 119 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTC-----------------SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS 119 (377)
T ss_dssp CEEEEEECTTTCCEEEE-----------------ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE
T ss_pred eEEEEEEeCCCCEEEEE-----------------eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe
Confidence 46788999998766642 234667778876665 222223334567899999998666665
Q ss_pred CCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 226 SWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 226 t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
. .+.|..++++.... .....+.....+....+++.++|++.++.
T Consensus 120 ~-d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 120 G-ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp S-SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred c-CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 4 45687777754321 11223322133445677888888755543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.76 E-value=0.15 Score=47.59 Aligned_cols=154 Identities=6% Similarity=-0.058 Sum_probs=89.5
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--------EEEeCCCcCcceEEEecCCCE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--------TLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--------~~~~~~l~~pngia~~~dg~~ 220 (360)
.+..+++.+++. +.++- ...|.|..+|..++.. ..+.......+.+++++++..
T Consensus 183 ~v~~l~~~~~~~~~l~s~-----------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 245 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSA-----------------SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245 (430)
T ss_dssp CCCCEEECTTSTTEEEEE-----------------CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT
T ss_pred CeEEEEeCCCCCCeEEEE-----------------eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC
Confidence 467889998886 66652 2356788888765211 112222335678999995444
Q ss_pred EEEEeCCCCEEEEEEecCCc-CcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 221 VVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~-~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
++++....+.|..|++.... ......+. .....+..+.+.++|. ++++...
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~-------------------------- 298 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA-------------------------- 298 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEET--------------------------
T ss_pred EEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeC--------------------------
Confidence 66666667889999986432 11122221 2333467788999885 5544433
Q ss_pred cccccCCCceEEEEECCC--CcEEEEEeCCCCCcccceeeEEEEC-C-EEEEEeCCCCeEEEEeC
Q 018144 299 SQFITLGGGAHLIHVAED--GTIIRNLVDPTGQLMSFVTSGLQVD-N-HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~--g~~~~~~~~~~g~~~~~~t~~~~~~-g-~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|.. ++.+..+.... ..++++.... + .+++.+-..+.|.++++
T Consensus 299 --------dg~v~vwd~~~~~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 299 --------DKTVALWDLRNLKLKLHSFESHK----DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp --------TSEEEEEETTCTTSCSEEEECCS----SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred --------CCeEEEEeCCCCCCCeEEeecCC----CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 2456666642 44455554332 2466666653 3 45665555667776654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.3 Score=43.69 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=55.4
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-------CeEEEEeC-CCcCcceEEEecCCCEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-------NITTLVAD-GFYFANGVALSRDEDYV 221 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-------g~~~~~~~-~l~~pngia~~~dg~~l 221 (360)
.++.+++.++|.+.++- ...+.|..+|..+ .+...... .....+.++++|+++.|
T Consensus 60 ~v~~v~~sp~~~~las~-----------------s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l 122 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAG-----------------SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122 (330)
T ss_dssp CEEEEEECTTSSEEEEE-----------------ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEE
T ss_pred CEEEEEECCCCCEEEEE-----------------eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEE
Confidence 46678888888766652 2244566665531 12211122 22346789999999866
Q ss_pred EEEeCCCCEEEEEEecCC-cC-cceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 222 VVCESWKFRCRKYWLKGE-RK-GKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~-~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
..+. ..+.|..++++.. .. .....+. ........+.+.++|++.++..
T Consensus 123 as~s-~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 123 ATCS-RDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp EEEE-TTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEe-CCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCCEEEEEc
Confidence 5554 4567888887321 11 1112222 2223345677788887666544
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.026 Score=55.50 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=72.0
Q ss_pred CcceEEEecCCCEEEEEeCCC---------------------CEEEEEEecCCcCc----ceeeecc-------------
Q 018144 208 FANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGERKG----KLETFAE------------- 249 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~---------------------~~i~~~~~~g~~~~----~~~~~~~------------- 249 (360)
.|.++.+++....+|++-|++ +.|++|..++.... +.+++..
T Consensus 385 RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~~ 464 (592)
T 3zwu_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred ccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccccc
Confidence 467899998544599997742 46999987643211 1122210
Q ss_pred --------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEE
Q 018144 250 --------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTII 320 (360)
Q Consensus 250 --------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~ 320 (360)
+.-..||||++|++|+|||++-+..+...++ .......++.+++ .|++.
T Consensus 465 ~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~----------------------~~~gnn~~~~~~~~~g~~~ 522 (592)
T 3zwu_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDF----------------------AGMGNNQMLCADPATGEIR 522 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGG----------------------TTTCSCEEEEECTTTCCEE
T ss_pred cccccCCCCCccCCcceEECCCCCEEEEecCCCcccccc----------------------cccccceEEEEeCCCCeEE
Confidence 0112599999999999999987632111000 0112346777776 47777
Q ss_pred EEEeCCCCCcccceeeEEEEC--CEEEEE
Q 018144 321 RNLVDPTGQLMSFVTSGLQVD--NHLYVI 347 (360)
Q Consensus 321 ~~~~~~~g~~~~~~t~~~~~~--g~Lylg 347 (360)
..+..|.|. .++++.+.. ..||+.
T Consensus 523 rf~~~P~ga---E~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 523 RFMVGPIGC---EVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECCTTC---EEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCc---cCcCeeECCCCCEEEEE
Confidence 777777764 788888863 578875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.25 Score=48.58 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=57.5
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E------------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccC
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N------------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVN 144 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~------------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~ 144 (360)
+|.||+++..+.|+.+| +|+.. . ....++++|+++.+..|+.+| .+| ...-.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 78999999756699999 67532 0 012367899998888899999 788 432211111
Q ss_pred ---CccccccccEEEcC--CC--cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 145 ---GSKLRFANDVVEAS--DG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 145 ---~~~~~~~n~l~~d~--dG--~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
+..+... -+..+. +| .||+...+.. ....|.|+.+|..||+...
T Consensus 148 ~~~~~~~~~s-P~v~~~~~~G~~~v~vg~~~~e------------~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 148 HGAGYTMTGA-PTIVKDGKTGKVLLIHGSSGDE------------FGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp GGGTCBCCSC-CEEEECTTTCCEEEEECCBCGG------------GCCBCEEEEECTTTCCEEE
T ss_pred CCcCcccccC-CEEeCCCcCCcEEEEEeccccc------------cCCCCEEEEEECCCCCEEe
Confidence 0011111 111221 23 6777432210 1125789999998888654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.45 Score=44.05 Aligned_cols=216 Identities=11% Similarity=-0.026 Sum_probs=110.8
Q ss_pred ceEEEcCCCCE-EEEecCCeEEEEE--CCeeeE-----------EEecCCeEEEEeCCCcEEEEc-CCC---eEEEeecc
Q 018144 82 EDASMDKNGVI-YTATRDGWIKRLQ--DGTWVN-----------WKFIDSHLIICDNANGLHKVS-EDG---VENFLSYV 143 (360)
Q Consensus 82 e~i~~d~~G~l-~v~~~~G~I~~~~--~g~~~~-----------~~~~~g~L~v~~~~~gl~~~~-~~g---~~~l~~~~ 143 (360)
.++++.++|.. .+|+.+|.|..++ +++... +...+..|..+..+..+...+ ... +..+. ..
T Consensus 151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h 229 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GH 229 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CC
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec-cc
Confidence 57888888764 4566888888887 443221 112222344444344444444 222 22221 11
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-----EEEeCCCcCcceEEEecCC
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-----TLVADGFYFANGVALSRDE 218 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-----~~~~~~l~~pngia~~~dg 218 (360)
...+..+...++|...++- ...+.+..++..+++. ............+++++++
T Consensus 230 ----~~~~~~~~~~~~g~~l~s~-----------------~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 230 ----SQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288 (420)
T ss_dssp ----SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred ----ccceeeeeecCCCCeeeee-----------------eccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence 1235567777888766642 2245566666654432 1122222345678888876
Q ss_pred CEEEEEe--CCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 219 DYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 219 ~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
..++++. +..+.|..+++..... ...+. .......+...++++..++..+..
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t~~~--~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~---------------------- 342 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCSGAC--LSAVD--AHSQVCSILWSPHYKELISGHGFA---------------------- 342 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTTTEE--EEEEE--CSSCEEEEEEETTTTEEEEEECTT----------------------
T ss_pred ccEEEEEeecCCCEEEEEeCCcccc--ceeec--cccceeeeeecCCCCeEEEEEecC----------------------
Confidence 5455443 3345677777653211 11111 122345666777777655543310
Q ss_pred cccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 297 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+| ++++.+..+..-. ..++++... +|.+.+..-....|...++
T Consensus 343 ----------d~~I~iwd~~~~~~v~~l~gH~----~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 343 ----------QNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ----------TCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ----------CCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 24566666 4677777775433 346777665 3544444334455655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.5 Score=47.32 Aligned_cols=106 Identities=10% Similarity=0.001 Sum_probs=60.6
Q ss_pred ccccEEEcCCCc--EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~--l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
...++.+++||+ +|..|.+ +.....|+.+|.++|+.......-....+++++ ||+.++++...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence 456778999996 4444432 222347889999988864331111113578899 99988887644
Q ss_pred ------------CCEEEEEEecCCcCcceeeeccCC--CCCCceeEEcCCCC-EEEEE
Q 018144 228 ------------KFRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 228 ------------~~~i~~~~~~g~~~~~~~~~~~~~--~g~pd~i~~d~~G~-lwva~ 270 (360)
...|+++++.........++.... +..-.++.+++||. |.+..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 245888887543322233443211 11223566789997 44443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.16 Score=50.90 Aligned_cols=153 Identities=8% Similarity=-0.028 Sum_probs=75.4
Q ss_pred cceEEEcCCCC-EEEEec---------CCeEEEEE--CCee---eEE-------E-ecCC-eEEEEeCCCcEEEEc-CCC
Q 018144 81 PEDASMDKNGV-IYTATR---------DGWIKRLQ--DGTW---VNW-------K-FIDS-HLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 81 Pe~i~~d~~G~-l~v~~~---------~G~I~~~~--~g~~---~~~-------~-~~~g-~L~v~~~~~gl~~~~-~~g 135 (360)
..++++.+||. |.+++. ++.|+.++ +|+. ..+ . .++| .|..+. .+.|+.++ .+|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g 140 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD 140 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence 56788999987 444443 47888888 5554 221 1 1244 344433 55677777 555
Q ss_pred -eEEEeecc-CCcc-------------ccccccEEEcCCCc-EEEEeCCCCCCCccceec---------------cc--c
Q 018144 136 -VENFLSYV-NGSK-------------LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLD---------------IL--E 182 (360)
Q Consensus 136 -~~~l~~~~-~~~~-------------~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~---------------~~--~ 182 (360)
...+.... .... +.....+++.+||+ |.++... .-....+... .. .
T Consensus 141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~ 219 (719)
T 1z68_A 141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN-DTDIPVIAYSYYGDEQYPRTINIPYPKAGA 219 (719)
T ss_dssp CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE-CTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC-CCCCceEEeeccCCCCCccceeecCCCCCC
Confidence 44332111 1000 01225789999996 4443110 0000000000 00 0
Q ss_pred cCCccEEEEEcCCCCeEE---EEe------CCCcCcceEEEecCCCEEEEEe-CCC--CEEEEEE
Q 018144 183 GKPHGQLLKYDPSSNITT---LVA------DGFYFANGVALSRDEDYVVVCE-SWK--FRCRKYW 235 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~---~~~------~~l~~pngia~~~dg~~l~v~~-t~~--~~i~~~~ 235 (360)
......|+.+|.++++.. .+. ........++++||++.++... ... ..|+.++
T Consensus 220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 112236888888766531 221 1122346789999986444322 222 3577888
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.49 Score=42.86 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=50.0
Q ss_pred cCCccEEEEEcCCCCe-----------------EEEEeCCCcCcceEEEecCCCEEEEEeCCCCE-EEEEEecCCcCcce
Q 018144 183 GKPHGQLLKYDPSSNI-----------------TTLVADGFYFANGVALSRDEDYVVVCESWKFR-CRKYWLKGERKGKL 244 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~-----------------~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~-i~~~~~~g~~~~~~ 244 (360)
+...|.|..+|..+++ ...+.......+.++++|||+.+..+. ..+. |..++....+ ..
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~~~--~~ 231 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QDGTIIRVFKTEDGV--LV 231 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TTCSEEEEEETTTCC--EE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CCCCEEEEEECCCCc--EE
Confidence 3456778888887654 333333334567899999998555544 4565 7777775321 12
Q ss_pred eeeccC-CCCCCceeEEcCCCCEEEEEe
Q 018144 245 ETFAEN-LPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 245 ~~~~~~-~~g~pd~i~~d~~G~lwva~~ 271 (360)
..+... ..+....++++++|++.++..
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 223211 333455678888887666543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.14 Score=49.70 Aligned_cols=138 Identities=10% Similarity=0.007 Sum_probs=79.2
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCe-e-----------eEE--Ee-cCC-eEEEEeCCCc-EEEEc-CCC--eE
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT-W-----------VNW--KF-IDS-HLIICDNANG-LHKVS-EDG--VE 137 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~-~-----------~~~--~~-~~g-~L~v~~~~~g-l~~~~-~~g--~~ 137 (360)
...++++.+++.|.+|+.||.|..++ ++. . ..+ .. .+| .++++....| +..+| +++ ..
T Consensus 268 ~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 268 LITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred CEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 34567777777888888999998888 342 1 112 11 233 4433332333 33344 333 22
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-EEEeCCCcCcceEEEec
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSR 216 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-~~~~~~l~~pngia~~~ 216 (360)
.+.....+ ..+..+++.++|..+++-+ ..+.|..+|..++.. ..+.......+.++++|
T Consensus 348 ~~~~~~~~---~~v~~v~fsp~~~~l~s~~-----------------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 348 TTVSRFRG---SNLVPVVYCPQIYSYIYSD-----------------GASSLRAVPSRAAFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp EEEEECSC---CSCCCEEEETTTTEEEEEC-----------------SSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred cccccccc---CcccceEeCCCcCeEEEeC-----------------CCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence 22111111 1256789999998777532 245677788766553 33333334678999999
Q ss_pred CCCEEEEEeCCCCEEEEEEecC
Q 018144 217 DEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+|+.+ ++.+..+.|..+++.+
T Consensus 408 ~g~~l-~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 408 LHPMV-LAGSADGSLIITNAAR 428 (524)
T ss_dssp SCCBC-EEEETTTEEECCBSCS
T ss_pred CCCeE-EEEECCCEEEEEechH
Confidence 99855 4545567787777644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.49 Score=46.68 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCCEEEEec-CCeEEEEE---CCeee----------------------EEEe--cCCe----EEEEeCCCcEEEEc-CCC
Q 018144 89 NGVIYTATR-DGWIKRLQ---DGTWV----------------------NWKF--IDSH----LIICDNANGLHKVS-EDG 135 (360)
Q Consensus 89 ~G~l~v~~~-~G~I~~~~---~g~~~----------------------~~~~--~~g~----L~v~~~~~gl~~~~-~~g 135 (360)
+|.||+++. ++.|+.+| +|+.. .... .+++ ||+++.+..|+.+| .+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 778999887 78888887 34321 0112 3566 99988777899999 788
Q ss_pred -eEEEeeccCCcc--ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 136 -VENFLSYVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 136 -~~~l~~~~~~~~--~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
...-.. ..... ......-.+ .+|.||+..+...+ ...|.|+.||.+||+...
T Consensus 142 ~~~W~~~-~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 142 ETVWKVE-NSDIKVGSTLTIAPYV-VKDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp CEEEEEE-CCCGGGTCBCCSCCEE-ETTEEEECCBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred CEEEeec-CCCCCccceeecCCEE-ECCEEEEEeccccc------------CCCCeEEEEECCCCcEEE
Confidence 332211 11100 000111123 25788885432110 125789999999998754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.67 Score=46.72 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred cccEEEcCCCc-EEE-EeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGS-LYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~v-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..++.+++||+ |.+ ++.. +.....|+.+|.++|+.......-....++++++| +.++++....
T Consensus 165 ~~~~~~SPDG~~la~~~~~~--------------G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDG--------------GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEECTTSSEEEEEEEET--------------TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred EEeEEECCCCCEEEEEEcCC--------------CCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecC
Confidence 45678899996 333 2211 11224689999988876443111111257899999 8888876432
Q ss_pred -------------CEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC-EEEEE
Q 018144 229 -------------FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 229 -------------~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~ 270 (360)
.+|+++++.+.......++... .+....++.+++||+ |.+..
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 3588888754332222333211 111234677889996 44433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.42 Score=47.81 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=55.5
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC---
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--- 226 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--- 226 (360)
..++.+++||+ |.++-.. ......|+.++..+++.+.+............ ++|+ +|+...
T Consensus 229 ~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~ 292 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGA 292 (695)
T ss_dssp EEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTC
T ss_pred EEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCC
Confidence 45778899995 5443211 00234688888766776666543333333333 6777 766654
Q ss_pred CCCEEEEEEecCCcCcceeeeccCC-CCCCceeEEcCCCCEEEEEe
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~-~g~pd~i~~d~~G~lwva~~ 271 (360)
...+|+++++++......+.+.... .....++.++ ++.+++...
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 3578999988653322222322111 1123345555 556666543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.016 Score=49.46 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=62.3
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC-------eEEEEeC-CCcCcceEEEecCCCEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-------ITTLVAD-GFYFANGVALSRDEDYV 221 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg-------~~~~~~~-~l~~pngia~~~dg~~l 221 (360)
...+++++++|.||.. ..|.|+++++.++ .-+.+-. +...=..+.++++|. |
T Consensus 42 ~~~~laf~P~G~LYaV-------------------~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-L 101 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-------------------LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-L 101 (236)
T ss_dssp TCSEEEECTTSCEEEE-------------------ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-E
T ss_pred cceeEEECCCccEEEE-------------------eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-E
Confidence 4569999999999995 2468999998662 2222221 222335688999996 8
Q ss_pred EEEeCCCCEEEEEEe--cCCc--CcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWKFRCRKYWL--KGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~--~g~~--~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
|++ + .++|+|++. ++.. +.....+.+..=.--.-+.+|++|+||... .
T Consensus 102 Yav-~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d 153 (236)
T 1tl2_A 102 YAV-S-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G 153 (236)
T ss_dssp EEE-E-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T
T ss_pred EEe-C-CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C
Confidence 888 3 378999876 2211 111122211000012457889999999988 5
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.18 Score=47.17 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=70.5
Q ss_pred EEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 119 LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
|..|+.++-|..++ .++ ...+... .+. ...+++|++.+ +|++.+|- ..+|.|..+|..
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~-~gH-~~~V~~l~f~p~~~~~l~s~-----------------s~D~~v~iwd~~ 195 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKG-IGA-GGSITGLKFNPLNTNQFYAS-----------------SMEGTTRLQDFK 195 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECC-CSS-SCCCCEEEECSSCTTEEEEE-----------------CSSSCEEEEETT
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEc-cCC-CCCEEEEEEeCCCCCEEEEE-----------------eCCCEEEEeecc
Confidence 44455444555666 444 2222111 111 13578999986 67777752 235678888887
Q ss_pred CCeEEEEeCCC---cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 196 SNITTLVADGF---YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 196 tg~~~~~~~~l---~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
++....+.... .....++++++++.++ +....+.|..+++++....... ........+.+.++|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~i~~wd~~~~~~~~~~----~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVV-TGDNVGNVILLNMDGKELWNLR----MHKKKVTHVALNPCCD 263 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEE-EECSSSBEEEEESSSCBCCCSB----CCSSCEEEEEECTTCS
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEE-EEeCCCcEeeeccCcceeEEEe----cccceEEeeeecCCCc
Confidence 66665544321 2345789999998554 4445678888988764322211 1122345577777775
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.075 Score=53.26 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=66.4
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE--CCeeeEE--------------Ee-cCCe-EEEEeC---------CCcEEEEc-CC
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNW--------------KF-IDSH-LIICDN---------ANGLHKVS-ED 134 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~--------------~~-~~g~-L~v~~~---------~~gl~~~~-~~ 134 (360)
++.+.++|.++..+.+|.|+.++ +|+...+ .. ++|+ |..+.. ...++.++ .+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 55666677655555667777777 4432221 11 2443 444432 13455555 44
Q ss_pred C-e---EEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC---
Q 018144 135 G-V---ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--- 206 (360)
Q Consensus 135 g-~---~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l--- 206 (360)
| . +.+ . ..+..++++|||+ |.++ ..+.|+.+|..+++...+....
T Consensus 100 g~~~~~~~l----~----~~~~~~~~SPDG~~la~~-------------------~~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 100 GEFVRGNEL----P----RPIQYLCWSPVGSKLAYV-------------------YQNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp TEECCSSCC----C----SSBCCEEECSSTTCEEEE-------------------ETTEEEEESSTTSCCEECCCCCBTT
T ss_pred Cccccceec----C----cccccceECCCCCEEEEE-------------------ECCeEEEEeCCCCCcEEEecCCCcC
Confidence 4 3 222 1 2367789999995 5443 1347888888777765543211
Q ss_pred ----------------cCcceEEEecCCCEEEEEe
Q 018144 207 ----------------YFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 207 ----------------~~pngia~~~dg~~l~v~~ 225 (360)
....+++++|||+.|+++.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 1125899999999887765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.37 Score=48.80 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=47.9
Q ss_pred ccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecC--CCEEE
Q 018144 150 FANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRD--EDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~d--g~~l~ 222 (360)
.+..+++.++ |+..++ +...|.|..+|..+++... ..........++++++ ++.++
T Consensus 55 ~V~~l~~s~~~~~~~l~s-----------------~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~ 117 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILAS-----------------CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 117 (753)
T ss_dssp CEEEEEECCTTSCSEEEE-----------------EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ceEEEEecCCCCCCEEEE-----------------EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEE
Confidence 4677888776 776665 2335678888877775322 2223345678999998 87665
Q ss_pred EEeCCCCEEEEEEecCC
Q 018144 223 VCESWKFRCRKYWLKGE 239 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~ 239 (360)
.+. ..+.|..+++...
T Consensus 118 sgs-~dg~I~vwdl~~~ 133 (753)
T 3jro_A 118 VAS-SDGKVSVVEFKEN 133 (753)
T ss_dssp EEE-TTSEEEEEECCSS
T ss_pred EEe-CCCcEEEEEeecC
Confidence 555 4678999998654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.24 E-value=1.2 Score=44.93 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=55.4
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCC--e-EEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--I-TTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg--~-~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
..++.+++||+ |.++-... ......|+.+|.+++ + .+.+.......... +++||+.+|+...
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~ 335 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSG 335 (741)
T ss_dssp EEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEEC
Confidence 45678899995 44432110 002347888888766 5 55554433222223 4588888877754
Q ss_pred C---CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 227 W---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 227 ~---~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
. +.+|+++++++.. ...+.+.........++..+ ++.+++..
T Consensus 336 ~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASY 380 (741)
T ss_dssp TTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEE
T ss_pred CCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEE
Confidence 2 4679999986532 22233322222222344555 44555544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.04 E-value=0.78 Score=41.09 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=49.3
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++.+++.++|.+.+|- ...+.|..+|..+++..... ......+.++++||++.++.+.. .
T Consensus 78 ~V~~~~~~~~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-d 139 (343)
T 2xzm_R 78 FVSDLALSQENCFAISS-----------------SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-E 139 (343)
T ss_dssp CEEEEEECSSTTEEEEE-----------------ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-T
T ss_pred ceEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-C
Confidence 46778888999877752 33577888898777654332 23345678999999996665554 5
Q ss_pred CEEEEEEecC
Q 018144 229 FRCRKYWLKG 238 (360)
Q Consensus 229 ~~i~~~~~~g 238 (360)
+.|..+++.+
T Consensus 140 ~~i~~wd~~~ 149 (343)
T 2xzm_R 140 REIKLWNILG 149 (343)
T ss_dssp SCEEEEESSS
T ss_pred CEEEEEeccC
Confidence 6788888753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.73 Score=40.33 Aligned_cols=71 Identities=10% Similarity=-0.096 Sum_probs=45.1
Q ss_pred ccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe----------EEEEeCCCcCcceEEEecC
Q 018144 150 FANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----------TTLVADGFYFANGVALSRD 217 (360)
Q Consensus 150 ~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~----------~~~~~~~l~~pngia~~~d 217 (360)
.+..+++.+ +|.+.++ +...|.|..+|..+++ ...+.........++++++
T Consensus 59 ~v~~~~~~~~~d~~~l~s-----------------~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 121 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIAS-----------------ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121 (351)
T ss_dssp CEEEEEECCGGGCSEEEE-----------------EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred cEEEEEEcCCCCCCEEEE-----------------EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCC
Confidence 467788877 5776664 2234567777766542 2222223345678999999
Q ss_pred --CCEEEEEeCCCCEEEEEEecC
Q 018144 218 --EDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 218 --g~~l~v~~t~~~~i~~~~~~g 238 (360)
++.++.+. ..+.|..+++..
T Consensus 122 ~~~~~l~~~~-~dg~v~iwd~~~ 143 (351)
T 3f3f_A 122 HLGLKLACLG-NDGILRLYDALE 143 (351)
T ss_dssp GGCSEEEEEE-TTCEEEEEECSS
T ss_pred CCCcEEEEec-CCCcEEEecCCC
Confidence 88665555 457899898764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.8 Score=40.73 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=61.6
Q ss_pred cEEEEc-CCC-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~-~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| . +.+.. + .+..+++.+|| ++++-....-. . ...+...|+.+| +++.+.+.
T Consensus 153 ~l~~~d~~~~~~~~~l~~--~-----~~~~~~~spdg-~~~~~~~~~~~--~------~~~~~~~l~~~d--~~~~~~l~ 214 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK--P-----RFSSGIWHRDK-IVVNVPHREII--P------QYFKFWDIYIWE--DGKEEKMF 214 (347)
T ss_dssp EEEEEETTTTEEEEEEEE--E-----TTCEEEEETTE-EEEEEECCCSS--C------CSSCCEEEEEEE--TTEEEEEE
T ss_pred eEEEEECCCCeEEeeecC--C-----CcccccCCCCe-EEEEEeccccc--c------cccccccEEEeC--CCceEEec
Confidence 466777 556 4 55532 1 35677889999 66653210000 0 000134789998 57776655
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC-------CCEEEEEEecCCcCcceeeeccCCCCCCce-eEEcCCCCEEEEEe
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW-------KFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWIAII 271 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~-------~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~-i~~d~~G~lwva~~ 271 (360)
.. .. -..++|||+.++++... ...|+.++ .+ ....+.........+ +.++ +| +++...
T Consensus 215 ~~-~~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~ 280 (347)
T 2gop_A 215 EK-VS--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK----EVMGILDEVDRGVGQAKIKD-GK-VYFTLF 280 (347)
T ss_dssp EE-ES--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS----CEEESSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred cC-cc--eeeECCCCCEEEEEEccccCCccccceEEEEC-CC----ceEeccccCCcccCCccEEc-Cc-EEEEEe
Confidence 43 22 22348999877666532 35788887 32 222222122222333 6677 77 665543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.96 E-value=0.78 Score=40.39 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=83.0
Q ss_pred CCcceEEEcCC-CCE-EEEecCCeEEEEE--CCe----------------eeEEEe-cCCe-EEEEeCCCcEEEEc-CCC
Q 018144 79 NHPEDASMDKN-GVI-YTATRDGWIKRLQ--DGT----------------WVNWKF-IDSH-LIICDNANGLHKVS-EDG 135 (360)
Q Consensus 79 ~~Pe~i~~d~~-G~l-~v~~~~G~I~~~~--~g~----------------~~~~~~-~~g~-L~v~~~~~gl~~~~-~~g 135 (360)
..-.+|++.++ +.+ ..++.||.|..++ +++ +..+.. ++|+ |..+..+..+...+ ..+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence 34567888875 554 4566889887776 221 011111 2344 34444333344444 333
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-C-CcCcceE
Q 018144 136 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G-FYFANGV 212 (360)
Q Consensus 136 -~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~-l~~pngi 212 (360)
......... .........+++...++ +...+.+..+|........... + ....+.+
T Consensus 119 ~~~~~~~~~~----~~~~~~~~~~~~~~l~s-----------------~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 119 TTTRRFVGHT----KDVLSVAFSSDNRQIVS-----------------GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EEEEEEECCS----SCEEEEEECTTSSCEEE-----------------EETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred ceeeeecCCC----CceeEEEEeecCcccee-----------------ecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 221111111 12334455666655553 2234566677765443322221 1 2334567
Q ss_pred EEecCCC-EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 213 ALSRDED-YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 213 a~~~dg~-~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
++++++. .++++....+.|..++....+ ....+. ...+....++++++|++.++...
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECCCCCEEEEEeC
Confidence 7776643 244454445667777765322 112221 22334556888999987665443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=1.2 Score=41.26 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 185 PHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
..|.|..+|..+++......+ ......++++ ++.++.+. ..+.|..+++...
T Consensus 191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~ 243 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCS-KDRSIAVWDMASP 243 (435)
T ss_dssp TTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEE-TTSCEEEEECSSS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEee-CCCcEEEEeCCCC
Confidence 356778888777765443322 2234455554 44455554 4567888887643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.98 Score=39.98 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=43.0
Q ss_pred cceEEEcCCCCEE-EEecCCeEEEEE--CCee---e----------EEEe--c-CC-eEEEEeCCCcEEEEc-CCC-eEE
Q 018144 81 PEDASMDKNGVIY-TATRDGWIKRLQ--DGTW---V----------NWKF--I-DS-HLIICDNANGLHKVS-EDG-VEN 138 (360)
Q Consensus 81 Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~~---~----------~~~~--~-~g-~L~v~~~~~gl~~~~-~~g-~~~ 138 (360)
-.+++++++|... .++.||.|..++ +++. . .+.. + ++ .|..+..++-+...+ +++ .+.
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 3567888877654 445788777776 4431 1 1222 1 13 344444445555556 444 222
Q ss_pred EeeccCCccccccccEEEcCC--CcEEEE
Q 018144 139 FLSYVNGSKLRFANDVVEASD--GSLYFT 165 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~d--G~l~vt 165 (360)
... ..+. ...++.+++.++ |.+.++
T Consensus 96 ~~~-~~~h-~~~V~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 96 SHE-HAGH-DSSVNSVCWAPHDYGLILAC 122 (316)
T ss_dssp EEE-ECCC-SSCCCEEEECCTTTCSCEEE
T ss_pred EEE-ccCC-CCceEEEEECCCCCCcEEEE
Confidence 211 1111 135788888886 665554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=1.4 Score=39.29 Aligned_cols=138 Identities=8% Similarity=-0.008 Sum_probs=72.4
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE-CC--------e-----------eeEEEe-cCCe-EEEEeCCCcEEEEc-C-C
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ-DG--------T-----------WVNWKF-IDSH-LIICDNANGLHKVS-E-D 134 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~-~g--------~-----------~~~~~~-~~g~-L~v~~~~~gl~~~~-~-~ 134 (360)
.-.++++.++|.+. .++.+|.|..++ .. + +..+.. ++|+ |..+..++-+..++ . .
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 35678888888755 455788777765 21 0 111111 2344 44444444455555 2 2
Q ss_pred C--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeC-CCcCc
Q 018144 135 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VAD-GFYFA 209 (360)
Q Consensus 135 g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~-~l~~p 209 (360)
+ .+.+.. ..+. ...++.+++.++|.+.+|- ...+.|..+|..++..+. ... .....
T Consensus 140 ~~~~~~~~~-~~~h-~~~v~~v~~~p~~~~l~s~-----------------s~D~~i~iW~~~~~~~~~~~~~~~h~~~v 200 (330)
T 2hes_X 140 GEEYECISV-LQEH-SQDVKHVIWHPSEALLASS-----------------SYDDTVRIWKDYDDDWECVAVLNGHEGTV 200 (330)
T ss_dssp CCCCEEEEE-ECCC-SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred CCCeEEEEE-eccC-CCceEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCCeeEEEEccCCCCcE
Confidence 2 222211 1111 1346788999999877763 234556666654443222 222 23345
Q ss_pred ceEEEecC--CCEEEEEeCCCCEEEEEEec
Q 018144 210 NGVALSRD--EDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 210 ngia~~~d--g~~l~v~~t~~~~i~~~~~~ 237 (360)
..++++++ +..+ ++....+.|..+++.
T Consensus 201 ~~~~~~~~~~~~~l-~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 201 WSSDFDKTEGVFRL-CSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEECCSSSSCEE-EEEETTSCEEEEEEE
T ss_pred EEEEecCCCCeeEE-EEEeCCCeEEEEEec
Confidence 78899998 5434 444445567767664
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.18 Score=47.55 Aligned_cols=102 Identities=7% Similarity=-0.064 Sum_probs=57.4
Q ss_pred ccccEEEcCCCcEEE----EeCCCCCCCccceecccccCCccEEEEEcCCCC-----eE------EEEeC-CCcCcceEE
Q 018144 150 FANDVVEASDGSLYF----TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-----IT------TLVAD-GFYFANGVA 213 (360)
Q Consensus 150 ~~n~l~~d~dG~l~v----td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg-----~~------~~~~~-~l~~pngia 213 (360)
.++.++++++|+..+ + +...+.|..+|..++ +. ..... .......++
T Consensus 94 ~v~~l~~spdg~~lav~~~s-----------------gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 156 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS-----------------SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK 156 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE-----------------TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE
T ss_pred cccEEEEcCCCCEEEEEEec-----------------cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE
Confidence 467889999997544 3 223456777765432 10 11111 133567899
Q ss_pred EecC-CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 214 LSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 214 ~~~d-g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
++|+ ++ ++++.+..+.|..+|+..... ..... ........++++++|+ |.++...
T Consensus 157 ~~p~~~~-~las~s~Dg~v~iwD~~~~~~--~~~~~-~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 157 WNPTVPS-MVAVCLADGSIAVLQVTETVK--VCATL-PSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp ECSSCTT-EEEEEETTSCEEEEEESSSEE--EEEEE-CGGGCEEEEEECTTSSCEEEEETT
T ss_pred ECCCCCC-EEEEEECCCeEEEEEcCCCcc--eeecc-CCCCceeEEEEcCCCCEEEEEcCC
Confidence 9998 55 555555567788888864311 11111 1122456788898886 4445433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=1.9 Score=38.08 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=50.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEE--ecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL--SRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~--~~dg~~l~v~~t~ 227 (360)
.+..+++.++|...++ +...|.|..+|..+++.............+++ +++++.++.+. .
T Consensus 88 ~v~~~~~~~~~~~l~s-----------------~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~ 149 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFT-----------------ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS-W 149 (368)
T ss_dssp CEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE-T
T ss_pred CEEEEEECcCCCEEEE-----------------EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc-C
Confidence 4778899999986664 22357889999888877665444455678898 88887555554 4
Q ss_pred CCEEEEEEecC
Q 018144 228 KFRCRKYWLKG 238 (360)
Q Consensus 228 ~~~i~~~~~~g 238 (360)
.+.|..+++..
T Consensus 150 dg~i~vwd~~~ 160 (368)
T 3mmy_A 150 DKTLKFWDTRS 160 (368)
T ss_dssp TSEEEEECSSC
T ss_pred CCcEEEEECCC
Confidence 57788888754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.8 Score=37.45 Aligned_cols=216 Identities=11% Similarity=-0.022 Sum_probs=107.9
Q ss_pred ceEEEcCCCCEE-EEecCCeEEEEE--CCeeeE-E----------EecCCeEEEEeCCCcEEEEc-CCC---eEEEeecc
Q 018144 82 EDASMDKNGVIY-TATRDGWIKRLQ--DGTWVN-W----------KFIDSHLIICDNANGLHKVS-EDG---VENFLSYV 143 (360)
Q Consensus 82 e~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~~-~----------~~~~g~L~v~~~~~gl~~~~-~~g---~~~l~~~~ 143 (360)
.++++.++|... +|+.+|.|..++ +++... + ...+..+..+.....+...+ ..+ ...+. ..
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~ 149 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GH 149 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CC
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc-Cc
Confidence 578888887654 556889888888 554321 1 11122233333333233333 332 22221 11
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-----EEeCCCcCcceEEEecCC
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-----LVADGFYFANGVALSRDE 218 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-----~~~~~l~~pngia~~~dg 218 (360)
......+...++|+..++- ...+.|..+|..+++.. ...........+++.+++
T Consensus 150 ----~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 150 ----SQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208 (318)
T ss_dssp ----SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS
T ss_pred ----cCceEEEEEcCCCCEEEEE-----------------ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC
Confidence 1235566777888766652 23466777777654321 111122234567777765
Q ss_pred CEEE-EEe-CCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 219 DYVV-VCE-SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 219 ~~l~-v~~-t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
..++ ++. ...+.|..++..... ..... ........+.+.++++..+...+.
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~----------------------- 261 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCSGA--CLSAV--DAHSQVCSILWSPHYKELISGHGF----------------------- 261 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEEETTTTEEEEEECT-----------------------
T ss_pred CcEEEEEecCCCCEEEEEeccccc--ccccc--cceeeeeeeeecccccceEEEEEc-----------------------
Confidence 4343 333 333455555543321 11111 111223455666767654433321
Q ss_pred cccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 297 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
..+.|..+| .+++.+..+.... ..++++... +|.+.+..-....|...++
T Consensus 262 ---------~d~~i~iwd~~~~~~~~~l~gH~----~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 262 ---------AQNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ---------TTCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ---------CCCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 024566667 4678887775433 357777776 4554444445566766654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.70 E-value=2 Score=44.39 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+..++++++|.+.++ +...|.|..+|..+++.......-.....+++++ |+.|+.+ ...+
T Consensus 19 ~V~~lafspdg~~lAs-----------------gs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~-s~D~ 79 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAI-----------------ATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVI-NAKD 79 (902)
T ss_dssp CEEEEEEETTTTEEEE-----------------EETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEE-ETTC
T ss_pred CcEEEEECCCCCEEEE-----------------EeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEE-ECcC
Confidence 4678999999987775 3346788889887666544333333467899999 7745444 4567
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
.|..++++..+ ....+. .++....++++++|++.+.
T Consensus 80 ~v~lWd~~~~~--~~~~~~--~~~~V~~v~~sp~g~~l~s 115 (902)
T 2oaj_A 80 TVYVLSLYSQK--VLTTVF--VPGKITSIDTDASLDWMLI 115 (902)
T ss_dssp EEEEEETTTCS--EEEEEE--CSSCEEEEECCTTCSEEEE
T ss_pred eEEEEECCCCc--EEEEEc--CCCCEEEEEECCCCCEEEE
Confidence 88888875432 122221 2234556778888874443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=94.57 E-value=2.1 Score=37.26 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=80.3
Q ss_pred CcceEEEcCCCCEE-EEecCCeEEEEE-CC---e-----------eeEEEe--c-CCe-EEEEeCCCcEEEEc-CCC-eE
Q 018144 80 HPEDASMDKNGVIY-TATRDGWIKRLQ-DG---T-----------WVNWKF--I-DSH-LIICDNANGLHKVS-EDG-VE 137 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~-v~~~~G~I~~~~-~g---~-----------~~~~~~--~-~g~-L~v~~~~~gl~~~~-~~g-~~ 137 (360)
.-.+++++++|... .++.+|.|..++ ++ + +..+.. + .++ |..+..++-+...+ .++ ..
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 34577888888655 445788887777 32 1 111222 1 133 33344334344445 333 21
Q ss_pred EEeeccCCccccccccEEEcCC--CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe---EEEEeCCCcCcceE
Q 018144 138 NFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGV 212 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~d--G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~---~~~~~~~l~~pngi 212 (360)
.+.. ..+. ...++.+++.++ |.+.++ +...+.|..+|..++. ...+.......+.+
T Consensus 91 ~~~~-~~~h-~~~v~~v~~~p~~~g~~l~s-----------------~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 91 QIAV-HAVH-SASVNSVQWAPHEYGPMLLV-----------------ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp CCEE-ECCC-SSCEEEEEECCGGGCSEEEE-----------------EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEEE-eecC-CCceeEEEeCcCCCCcEEEE-----------------EECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 1111 0111 124677888876 666554 2235667777765432 12222222345677
Q ss_pred EEecC-------------CCEEEEEeCCCCEEEEEEecCCcCc--ceeeeccCCCCCCceeEEcCCC
Q 018144 213 ALSRD-------------EDYVVVCESWKFRCRKYWLKGERKG--KLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 213 a~~~d-------------g~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~~~~~g~pd~i~~d~~G 264 (360)
+++|+ ++ ++++....+.|..++.+..... ....+. ........+++.++|
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTV 216 (297)
T ss_dssp EECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCC
T ss_pred eecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCC
Confidence 88876 34 4444444567777777542211 111121 122234567777775
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.48 E-value=1.4 Score=44.49 Aligned_cols=104 Identities=14% Similarity=0.068 Sum_probs=58.1
Q ss_pred cccEEEc-CCCc-EEEE-eCCCCCCCccceecccccCCccEEEEEcCCCC-eEEEEeCCCc-CcceEEEecCCCEEEEEe
Q 018144 151 ANDVVEA-SDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFY-FANGVALSRDEDYVVVCE 225 (360)
Q Consensus 151 ~n~l~~d-~dG~-l~vt-d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg-~~~~~~~~l~-~pngia~~~dg~~l~v~~ 225 (360)
.....++ +||+ |.++ |.. +.....|+.+|.++| +. +...+. ...++++++||+.++++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~--------------G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~ 239 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMS--------------GNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT 239 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESS--------------SSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred EeeeEecCCCCCEEEEEEeCC--------------CCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence 4456889 9996 4443 322 222346999999887 52 111111 135789999998777765
Q ss_pred CCC----CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 018144 226 SWK----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 226 t~~----~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 270 (360)
... .+|+++++.+.......++......+-.++.+++||. |.+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 421 3688888765432223333322222333566788886 44433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.24 E-value=1.5 Score=42.92 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=60.3
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCC---CCCCceeEEcCCCC-EEEEEecCchhHHHHhhc
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL---PGAPDNINLAPDGT-FWIAIIKLDARRMKILNS 283 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~---~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~ 283 (360)
....++++|||+.+-++. ..+.|..++.++ ....+.... ......+++.+||. |.++...
T Consensus 87 ~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D----------- 150 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED----------- 150 (588)
T ss_dssp CEEEEEECSSSSCEEEEE-TTSCEEEEETTE----EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT-----------
T ss_pred cEEEEEECCCCCEEEEEe-CCCcEEEEeCCc----eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC-----------
Confidence 457899999998555544 456677776432 112221010 01245788999996 5555443
Q ss_pred chhHHHHHHhCCccccccccCCCceEEEEECCCCc--------EEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEE
Q 018144 284 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT--------IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 355 (360)
Q Consensus 284 ~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--------~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~ 355 (360)
+.|..++.+++ .+..+....+...+.+..+....+. .+++-.++.+.
T Consensus 151 ------------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVr 205 (588)
T 2j04_A 151 ------------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVF 205 (588)
T ss_dssp ------------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEE
T ss_pred ------------------------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEE
Confidence 45666665433 2445432221123567777776533 44444566666
Q ss_pred EEeC
Q 018144 356 KVQL 359 (360)
Q Consensus 356 ~~~l 359 (360)
.+++
T Consensus 206 lWd~ 209 (588)
T 2j04_A 206 SMTV 209 (588)
T ss_dssp EECC
T ss_pred EEEC
Confidence 5544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.038 Score=51.03 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
.|.|+.+|.++|+....... .......+..++. +|++.+..+.|+.++.+
T Consensus 18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~ 67 (369)
T 2hz6_A 18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK 67 (369)
T ss_dssp TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence 57899999988987643332 2222233344554 66766667789999874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.78 E-value=1.8 Score=41.86 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=84.9
Q ss_pred CcceEEEcCC------C-CEEEEecCCeEEEEE--CCe----------------------eeEEEe-cCCeEEEEeCCCc
Q 018144 80 HPEDASMDKN------G-VIYTATRDGWIKRLQ--DGT----------------------WVNWKF-IDSHLIICDNANG 127 (360)
Q Consensus 80 ~Pe~i~~d~~------G-~l~v~~~~G~I~~~~--~g~----------------------~~~~~~-~~g~L~v~~~~~g 127 (360)
...++++.++ + .|-.++.+|.|..++ +++ +..+.. .++.|..+..++-
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~Dgt 288 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGF 288 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCE
Confidence 3456777664 3 344456888887777 331 111222 2345555554444
Q ss_pred EEEEc-CCC---eEEEeeccCCccccccccE--EEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE
Q 018144 128 LHKVS-EDG---VENFLSYVNGSKLRFANDV--VEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 200 (360)
Q Consensus 128 l~~~~-~~g---~~~l~~~~~~~~~~~~n~l--~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~ 200 (360)
+..++ .++ ...+. ... ..+++| +..++| ++.+|- ..++.|..+|..+++..
T Consensus 289 V~lWD~~~~~~~~~~~~-~H~----~~V~sv~~~~s~~g~~~laS~-----------------S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQ-VHD----SYILSVSTAYSDFEDTVVSTV-----------------AVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEEEETTBCSSCSEEEE-CSS----SCEEEEEEECCTTSCCEEEEE-----------------ETTSEEEEECGGGHHHH
T ss_pred EEEEECCCCCCceEEee-ccc----ccEEEEEEEcCCCCCeEEEEe-----------------ccCCeEEEEECCCCCcc
Confidence 55555 433 22221 111 235666 346677 776752 33567888887554321
Q ss_pred E-EeCCC--cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 201 L-VADGF--YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 201 ~-~~~~l--~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
. +.... .....++++|+++. +++....+.|..+++..... ...+. ...+....+++.++|.+.++
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~--~~~l~-gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA--VHPLV-SRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC--CEEEE-ECSSCEEEEECCSSCCBCEE
T ss_pred cccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc--ceeee-cCCCceEEEEeCCCCCeEEE
Confidence 1 11111 12467999999985 55555566777777643221 11222 12233456677777764443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=93.71 E-value=1 Score=45.38 Aligned_cols=77 Identities=10% Similarity=-0.110 Sum_probs=47.8
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
+++.+++||+ |.++.... .+......+.++.+|.++++.+.+..........+++|||+.|..+. .+.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~---------~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYV---------KQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEE---------ECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTE
T ss_pred cceEECCCCCEEEEEECCe---------eeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCe
Confidence 4578899996 44432110 00001223678899999888765443333456789999998776664 357
Q ss_pred EEEEEecCC
Q 018144 231 CRKYWLKGE 239 (360)
Q Consensus 231 i~~~~~~g~ 239 (360)
|+.++.++.
T Consensus 134 i~~~~~~~~ 142 (740)
T 4a5s_A 134 IYVKIEPNL 142 (740)
T ss_dssp EEEESSTTS
T ss_pred EEEEECCCC
Confidence 888877653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=93.35 E-value=1.2 Score=40.12 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=50.4
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccE-EEEEcCCCCeEEEEeC---CCcCcceEEEecCCCEEEEEe
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ-LLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tg~~~~~~~---~l~~pngia~~~dg~~l~v~~ 225 (360)
.+..++++++|++.+| +...+. |..+|..+++...... .....+.++++||++.+..+.
T Consensus 197 ~v~~~~~s~~g~~l~s-----------------~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVAT-----------------CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp CEEEEEECTTSSEEEE-----------------EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred ceEEEEECCCCCEEEE-----------------EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 4678899999987775 234566 8888988776544332 234567899999998665554
Q ss_pred CCCCEEEEEEecCC
Q 018144 226 SWKFRCRKYWLKGE 239 (360)
Q Consensus 226 t~~~~i~~~~~~g~ 239 (360)
..+.|..++++..
T Consensus 260 -~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 260 -DKWTLHVFEIFND 272 (355)
T ss_dssp -TTCEEEEEESSCC
T ss_pred -CCCEEEEEEccCC
Confidence 4578888887643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=92.84 E-value=4.3 Score=40.14 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=34.2
Q ss_pred EEEcCCCCEEEEe--cCCeEEEEE--CCeeeEE------------Ee-cCCeEEEEeC-C------CcEEEEc-CCC-eE
Q 018144 84 ASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNW------------KF-IDSHLIICDN-A------NGLHKVS-EDG-VE 137 (360)
Q Consensus 84 i~~d~~G~l~v~~--~~G~I~~~~--~g~~~~~------------~~-~~g~L~v~~~-~------~gl~~~~-~~g-~~ 137 (360)
+++..+|.||+.. .+..+.++| +++++.. .. .+|+|||... . ..+.++| .++ .+
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 5556688999865 345789998 5554432 12 3788888654 1 2366677 455 44
Q ss_pred EE
Q 018144 138 NF 139 (360)
Q Consensus 138 ~l 139 (360)
.+
T Consensus 328 ~~ 329 (656)
T 1k3i_A 328 SL 329 (656)
T ss_dssp EE
T ss_pred eC
Confidence 44
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.4 Score=43.62 Aligned_cols=96 Identities=13% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEEe-----------------cCCeEEEEe--CCCcEEEEc-CCCeEEEeeccC--
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWKF-----------------IDSHLIICD--NANGLHKVS-EDGVENFLSYVN-- 144 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~~-----------------~~g~L~v~~--~~~gl~~~~-~~g~~~l~~~~~-- 144 (360)
+|.+|+++.+|.|+.+| +|+.. |.. .++.+|+.. .+..|+.++ .+|.+.+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~-W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHII-WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEE-EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEE-EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 56889999999999999 67532 221 134677764 345688888 667332321111
Q ss_pred --CccccccccEEE------cCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 145 --GSKLRFANDVVE------ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 145 --~~~~~~~n~l~~------d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
..++..-....+ +.+|.+|+ +...|+++.+|..||+.....
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~------------------Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYT------------------GSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEE------------------CEEEEEEEEEETTTCCEEEEE
T ss_pred eeccccccCCCceeecccccccCCEEEE------------------EecCCEEEEEECCCCcEEEEE
Confidence 111111111122 25778888 455789999999999886543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=92.19 E-value=5.7 Score=34.86 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=43.7
Q ss_pred ccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE---EEeCCCcCcceEEEecC--CCEEE
Q 018144 150 FANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT---LVADGFYFANGVALSRD--EDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~---~~~~~l~~pngia~~~d--g~~l~ 222 (360)
.+..+++.+ +|++.+| +...+.|..+|..+++.. .+.......+.++++|+ +. ++
T Consensus 59 ~V~~v~~~~~~~~~~l~s-----------------~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~l 120 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILAS-----------------CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-IL 120 (316)
T ss_dssp CEEEEEECCGGGSSCEEE-----------------EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CE
T ss_pred cEEEEEeCCCCCCCEEEE-----------------EECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EE
Confidence 466777754 4666664 223567888888766422 22222345789999997 55 44
Q ss_pred EEeCCCCEEEEEEecC
Q 018144 223 VCESWKFRCRKYWLKG 238 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g 238 (360)
++.+..+.|..++...
T Consensus 121 asgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 121 ACGSSDGAISLLTYTG 136 (316)
T ss_dssp EEECSSSCEEEEEECS
T ss_pred EEEcCCCCEEEEecCC
Confidence 5555566788777754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.39 E-value=6.6 Score=34.01 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=44.2
Q ss_pred ccccEEEcC--CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE---EEeCCCcCcceEEEecC--CCEEE
Q 018144 150 FANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT---LVADGFYFANGVALSRD--EDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~--dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~---~~~~~l~~pngia~~~d--g~~l~ 222 (360)
.++.+++.+ +|++.+| +..++.|..+|..+++.. .+.......+.++++|+ +..+.
T Consensus 55 ~V~~v~~s~~~~g~~l~s-----------------~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILAS-----------------CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp CEEEEEECCGGGCSEEEE-----------------EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred CeEEEEecCCCcCCEEEE-----------------EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEE
Confidence 456777754 4777665 233567888887766422 22222335678999987 76555
Q ss_pred EEeCCCCEEEEEEecC
Q 018144 223 VCESWKFRCRKYWLKG 238 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g 238 (360)
.+. ..+.|..+++..
T Consensus 118 s~s-~d~~v~~wd~~~ 132 (297)
T 2pm7_B 118 VAS-SDGKVSVVEFKE 132 (297)
T ss_dssp EEE-TTSEEEEEEBCS
T ss_pred EEE-CCCcEEEEEecC
Confidence 444 467888888754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=90.73 E-value=4.7 Score=37.61 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=49.1
Q ss_pred cccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t 226 (360)
..+.++++.++ ++++++- ...|.|..+|..+++......+ ....+.++++++|+.|+++..
T Consensus 150 ~~V~~v~~~p~~~~~las~-----------------s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~ 212 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVC-----------------LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ 212 (434)
T ss_dssp GSEEEEEECSSCTTEEEEE-----------------ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET
T ss_pred CceEEEEECCCCCCEEEEE-----------------ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC
Confidence 35778899987 6777752 2356788888876644322222 345788999999997776664
Q ss_pred CCCEEEEEEecC
Q 018144 227 WKFRCRKYWLKG 238 (360)
Q Consensus 227 ~~~~i~~~~~~g 238 (360)
.+.|..|+.++
T Consensus 213 -dg~v~iwd~~~ 223 (434)
T 2oit_A 213 -NGTVVQYLPTL 223 (434)
T ss_dssp -TSCEEEECTTC
T ss_pred -CCcEEEEccCC
Confidence 56788888753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=89.44 E-value=12 Score=34.06 Aligned_cols=130 Identities=8% Similarity=0.027 Sum_probs=67.2
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE--CCeeeE-------------EEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEeec
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVN-------------WKF-IDS-HLIICDNANGLHKVS-EDG--VENFLSY 142 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~-------------~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~~~ 142 (360)
.|.+.+++.|-+|. ++.|+.++ +|+... +.. ++| .|.++..++.+..++ .++ +..+ ..
T Consensus 110 ~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~ 187 (420)
T 4gga_A 110 LVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TS 187 (420)
T ss_dssp CEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CC
T ss_pred eEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eC
Confidence 35555555444544 67787777 554322 221 233 355555555566666 555 3322 11
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEEeCCCcCcceEEEecCCCE
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. ..+.. +..++.+.++ +...+.+..+|..+.. +..+........++.++++++.
T Consensus 188 h~----~~v~~--~s~~~~~l~s-----------------gs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 188 HS----ARVGS--LSWNSYILSS-----------------GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp CS----SCEEE--EEEETTEEEE-----------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CC----CceEE--EeeCCCEEEE-----------------EeCCCceeEeeecccceeeEEecccccceeeeeecCCCCe
Confidence 11 11223 3334555554 2234566666654332 2223333455678899999986
Q ss_pred EEEEeCCCCEEEEEEecC
Q 018144 221 VVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g 238 (360)
+..+. ..+.+..++...
T Consensus 245 l~s~~-~D~~v~i~~~~~ 261 (420)
T 4gga_A 245 LASGG-NDNLVNVWPSAP 261 (420)
T ss_dssp EEEEE-TTSCEEEEESSC
T ss_pred eeeee-ccccceEEeecc
Confidence 65554 456677777653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=87.22 E-value=17 Score=33.01 Aligned_cols=55 Identities=5% Similarity=-0.156 Sum_probs=34.9
Q ss_pred cccEEEcC---CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC----CcCcceEEEecCCCEEE
Q 018144 151 ANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFANGVALSRDEDYVV 222 (360)
Q Consensus 151 ~n~l~~d~---dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----l~~pngia~~~dg~~l~ 222 (360)
...+++.+ +|.+.++- ..++.|..+|.++|+......+ ......++++|||+.+.
T Consensus 181 v~~l~fs~~~g~~~~LaSg-----------------S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGT-----------------TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp SCEEEEEEEETSTTEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred eeeEEeeccCCCCceEEEe-----------------cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 34555555 67888863 3467788899998876443322 22345668999997553
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=86.89 E-value=12 Score=33.91 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=35.0
Q ss_pred CCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 184 KPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
...|.|..+|..+++.... .......+.++++|||+.|-++.. +++..+.+.|
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~--~Gv~lvrL~g 389 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE--GSVLLTRLMG 389 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES--SEEEEEEEGG
T ss_pred CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEEeC
Confidence 3467888899877655332 222334678999999997766653 4576666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.42 E-value=3.6 Score=37.27 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=56.8
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCc-CcceEEEe----cCCCEEEEEe-CCCCEEEEEEecCCcCcceeeeccCC-CCCCc
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFY-FANGVALS----RDEDYVVVCE-SWKFRCRKYWLKGERKGKLETFAENL-PGAPD 256 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~-~pngia~~----~dg~~l~v~~-t~~~~i~~~~~~g~~~~~~~~~~~~~-~g~pd 256 (360)
+.+|.|+.+|.++|+......... .| -+... +++..+|+.+ +..++|+.++.+.+.. ....-...+ ...|-
T Consensus 17 t~dG~l~Ald~~tG~~~W~~~~~~~~p-~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~~lv~~SP~ 94 (339)
T 2be1_A 17 DVEGGLHAVDRRNGHIIWSIEPENFQP-LIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIRQLVSTSPL 94 (339)
T ss_dssp ETTSCEEEEETTTTEEEEEECGGGSCC-SEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHHHHHTTCSE
T ss_pred eCCCeEEEEECCCCcEEEEecCCccCC-cEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccccceecccc
Confidence 456789999988888765433210 11 01100 1223477776 5678888888653211 111100000 00110
Q ss_pred ----eeEE------cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC
Q 018144 257 ----NINL------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD 325 (360)
Q Consensus 257 ----~i~~------d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~ 325 (360)
...+ +.+|.+|++... +.++.+|. +|+++..+..
T Consensus 95 ~~~~~pvv~~~~~~~~~g~Vy~Gs~~-----------------------------------g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 95 HLKTNIVVNDSGKIVEDEKVYTGSMR-----------------------------------TIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEECC----------CCEEEEECEEE-----------------------------------EEEEEEETTTCCEEEEEST
T ss_pred ccCCCceeecccccccCCEEEEEecC-----------------------------------CEEEEEECCCCcEEEEEec
Confidence 1112 267889999876 78999995 6999888864
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=84.16 E-value=3.6 Score=39.97 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=57.6
Q ss_pred EEEEEcCCC----C-eEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC------CcC-cc-eeeeccCCCC-
Q 018144 188 QLLKYDPSS----N-ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG------ERK-GK-LETFAENLPG- 253 (360)
Q Consensus 188 ~l~~~d~~t----g-~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g------~~~-~~-~~~~~~~~~g- 253 (360)
++-.+|... + .+..+...-..|+|+-++|||++++++.-....+..|+.+. .+. .- ..+..+...|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 566777653 1 33444445578999999999999999999889999999752 111 10 1112222223
Q ss_pred CCceeEEcCCCCEEEEEec
Q 018144 254 APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~ 272 (360)
.|--.++|.+|+.|.+++-
T Consensus 379 GPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp CEEEEEECSSSEEEEEETT
T ss_pred cccEEEECCCCceEeeeee
Confidence 4778899999999999863
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=80.15 E-value=53 Score=33.18 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=22.3
Q ss_pred CCcceEEEcC--CCCEEEEecCCeEEEEE-CC
Q 018144 79 NHPEDASMDK--NGVIYTATRDGWIKRLQ-DG 107 (360)
Q Consensus 79 ~~Pe~i~~d~--~G~l~v~~~~G~I~~~~-~g 107 (360)
..-.+|++++ .+.+|+++..|.|+|-+ .|
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG 46 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGT 46 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTT
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCC
Confidence 3556788886 47899999888899988 44
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 5e-32 |
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 120 bits (303), Expect = 5e-32
Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 21/254 (8%)
Query: 101 IKRLQDGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDG 160
D T + + +H E+ L + L ND+V
Sbjct: 104 TFIDDDNTV--YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE 161
Query: 161 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220
Y T P+ ++ G + Y P+ +VA+GF FANG+ +S D Y
Sbjct: 162 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RVVAEGFDFANGINISPDGKY 219
Query: 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKI 280
V + E + Y + DNI++ P + R+
Sbjct: 220 VYIAELLAHKIHVYEKHANWTLTPLRV-LSFDTLVDNISVDPVTGDLWVGCHPNGMRIFF 278
Query: 281 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV 340
++ + + S E+ + + G ++ T
Sbjct: 279 YDAENPPGSEVLRIQDILS---------------EEPK-VTVVYAENGTVLQGSTVAAVY 322
Query: 341 DNHLYVISLTSNFI 354
L + ++ +
Sbjct: 323 KGKLLIGTVFHKAL 336
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.96 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.94 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.93 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.82 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.48 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.45 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.45 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.44 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.42 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.15 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.09 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.71 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.67 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.66 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.6 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.45 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.45 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.33 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.3 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.21 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.19 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.12 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.12 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.09 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.09 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.05 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 97.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.96 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.94 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.79 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.69 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.56 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.45 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.43 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.41 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.29 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.21 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.19 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.18 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.12 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.82 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.79 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.79 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 96.77 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.69 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.54 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.29 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.26 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.18 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.17 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.04 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.56 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.26 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.68 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.14 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.48 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 93.26 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 93.23 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 92.82 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 92.54 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 92.43 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.25 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 90.48 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.4 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 89.68 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 88.19 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.16 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.42 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 80.52 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.96 E-value=1.2e-27 Score=218.77 Aligned_cols=249 Identities=22% Similarity=0.308 Sum_probs=187.1
Q ss_pred ceEecCCCCCCcceEEEcCCCCEEEEec--------CCeEEEEE--CCeeeEE---------------Ee-c-CCeEEEE
Q 018144 70 FIKVGEGSVNHPEDASMDKNGVIYTATR--------DGWIKRLQ--DGTWVNW---------------KF-I-DSHLIIC 122 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G~l~v~~~--------~G~I~~~~--~g~~~~~---------------~~-~-~g~L~v~ 122 (360)
.+++.++ +.+||++++|++|+||+.+. +|+|+|++ ++....+ .. . +++|||+
T Consensus 10 ~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred eEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE
Confidence 3667766 79999999999999999763 46899999 4433322 11 2 3469999
Q ss_pred eCCCcEEEEcCCC-eEE-EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE
Q 018144 123 DNANGLHKVSEDG-VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 200 (360)
Q Consensus 123 ~~~~gl~~~~~~g-~~~-l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~ 200 (360)
+..+++++++.++ ... +....++.+++.||++++|++|+|||||.+......... .......|+|++++++ ++..
T Consensus 89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~--~~~~~~~G~v~~~~~d-g~~~ 165 (314)
T d1pjxa_ 89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCEE
T ss_pred ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc--ceeccCCceEEEEeec-Ccee
Confidence 9889999999666 443 344556667889999999999999999987443322222 1123456899999987 6777
Q ss_pred EEeCCCcCcceEEEecCCC----EEEEEeCCCCEEEEEEecCC-cCcceeeeccC---CCCCCceeEEcCCCCEEEEEec
Q 018144 201 LVADGFYFANGVALSRDED----YVVVCESWKFRCRKYWLKGE-RKGKLETFAEN---LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 201 ~~~~~l~~pngia~~~dg~----~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~---~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+..++..|||++++++++ .||++++..++|++|+++.. .....+++.+. ..+.||||++|.+|+|||+.+.
T Consensus 166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence 7777889999999999875 79999999999999998643 33444444321 2346999999999999999987
Q ss_pred CchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-cEEEEEeCCCCCcccceeeEEEEC--CEEEEEeC
Q 018144 273 LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-TIIRNLVDPTGQLMSFVTSGLQVD--NHLYVISL 349 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~~~~~~~~~~g~~~~~~t~~~~~~--g~Lylgs~ 349 (360)
.+.|.+|+|+| +....+..|.. .++++++.+ ++|||++.
T Consensus 246 ----------------------------------~g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~ 287 (314)
T d1pjxa_ 246 ----------------------------------SSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp ----------------------------------TTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEET
T ss_pred ----------------------------------CCEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEEEC
Confidence 46899999985 45566666542 467777763 47999999
Q ss_pred CCCeEEEEeCC
Q 018144 350 TSNFIGKVQLS 360 (360)
Q Consensus 350 ~~~~i~~~~l~ 360 (360)
.+++|.++++.
T Consensus 288 ~~g~i~~~~~~ 298 (314)
T d1pjxa_ 288 ENNAVWKFEWQ 298 (314)
T ss_dssp TTTEEEEEECS
T ss_pred CCCcEEEEECC
Confidence 99999999863
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.94 E-value=9.5e-25 Score=200.81 Aligned_cols=265 Identities=20% Similarity=0.264 Sum_probs=182.9
Q ss_pred cceEecCCCCCCcceEEEcCCCCEEEEec-------------CCeEEEEE-C-C--eeeEEE------------------
Q 018144 69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-------------DGWIKRLQ-D-G--TWVNWK------------------ 113 (360)
Q Consensus 69 ~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~-------------~G~I~~~~-~-g--~~~~~~------------------ 113 (360)
++..+ ++...|||+|+++++|.+|+++. .|.|+.++ + . +...+.
T Consensus 26 ~C~~i-~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l 104 (340)
T d1v04a_ 26 NCNLV-KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIST 104 (340)
T ss_dssp SCEEC-TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEE
T ss_pred CceEc-CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeE
Confidence 44444 46567999999999999998873 38898888 2 2 221111
Q ss_pred --ecCC--eEEEEeCC--C---cEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceeccccc
Q 018144 114 --FIDS--HLIICDNA--N---GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 183 (360)
Q Consensus 114 --~~~g--~L~v~~~~--~---gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~ 183 (360)
..+| +|+|.++. + .++.++.++ ...+........+..||+|++..+|.+|+||.+..........+.+.+
T Consensus 105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence 1123 36776652 1 244555333 222333445566788999999999999999865322211122334456
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP- 262 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~- 262 (360)
.+.+.++++|+ ++.+.+.+++.+||||++++|++.|||+++...+|.+|++++........+. .+++.||||.+|+
T Consensus 185 ~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~ 261 (340)
T d1v04a_ 185 LAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPV 261 (340)
T ss_dssp CCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTT
T ss_pred CCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecC
Confidence 67889999987 4567778889999999999999999999999999999999865433333333 4788999999995
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC----CCCcEEEEEeCCCCCcccceeeEE
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA----EDGTIIRNLVDPTGQLMSFVTSGL 338 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~----~~g~~~~~~~~~~g~~~~~~t~~~ 338 (360)
+|.+|++....... +....+. ......++++. .++++.+.|.+ +|..+..+|.+.
T Consensus 262 ~g~lwva~~p~~~~-------------~~~~~~~-------~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~ 320 (340)
T d1v04a_ 262 TGDLWVGCHPNGMR-------------IFFYDAE-------NPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAA 320 (340)
T ss_dssp TCCEEEEEESCHHH-------------HHSCCTT-------SCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEE
T ss_pred CCEEEEEECCcccc-------------hhhhccc-------CCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEE
Confidence 78999998763211 1111111 11124556652 35788888877 466688899999
Q ss_pred EECCEEEEEeCCCCeEEEEeC
Q 018144 339 QVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 339 ~~~g~Lylgs~~~~~i~~~~l 359 (360)
+.+|+||+||+..++| .|+|
T Consensus 321 ~~~g~L~iGs~~~~~l-~C~~ 340 (340)
T d1v04a_ 321 VYKGKLLIGTVFHKAL-YCDL 340 (340)
T ss_dssp EETTEEEEEESSSCEE-EEEC
T ss_pred EECCEEEEEeeeCCce-EecC
Confidence 9999999999999988 7876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.93 E-value=7.9e-24 Score=191.40 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=170.9
Q ss_pred ceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeEEE----------ecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCC
Q 018144 82 EDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWK----------FIDSHLIICDNANGLHKVS-EDG-VENFLSYVNG 145 (360)
Q Consensus 82 e~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~~~----------~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~ 145 (360)
|+..+|+ +|.||+.+ .+++|+|++ +++.+.+. ..+|+||++. .+|+++++ .+| ++.+.....+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~ 99 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESD 99 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecC
Confidence 6667884 88999998 889999999 56554432 2478899987 57999999 778 8877665555
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEe
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~ 225 (360)
.+...+|++.+|++|++||++..... ....+.+++++. ++++.+..++..|||+++++|++.+|+++
T Consensus 100 ~~~~~~nd~~vd~~G~iw~~~~~~~~-----------~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 100 LPGNRSNDGRMHPSGALWIGTMGRKA-----------ETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTC-----------CTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred CCcccceeeEECCCCCEEEEeccccc-----------cccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEee
Confidence 55678999999999999999754211 123467888763 78887878889999999999999999999
Q ss_pred CCCCEEEEEEecCC---cCcceeeecc--CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 226 SWKFRCRKYWLKGE---RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 226 t~~~~i~~~~~~g~---~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
+..++|++|+++.. ..+....+.+ ...+.||++++|++|+|||+.+.
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~---------------------------- 218 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---------------------------- 218 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----------------------------
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----------------------------
Confidence 99999999998743 2233344432 24567999999999999999987
Q ss_pred cccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeCC
Q 018144 301 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLT 350 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~~ 350 (360)
.+.|.+|+|+|+.+..+..|.. .+|++++.+ ++|||++..
T Consensus 219 ------~g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 219 ------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred ------CCceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence 3689999999999999988753 588888863 789999865
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=2.1e-23 Score=190.62 Aligned_cols=223 Identities=21% Similarity=0.295 Sum_probs=164.1
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE-CCe-eeEE-----------E-ecCCeEEEEeCC-----CcEEEEc-CCC-e
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT-WVNW-----------K-FIDSHLIICDNA-----NGLHKVS-EDG-V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~-~~~~-----------~-~~~g~L~v~~~~-----~gl~~~~-~~g-~ 136 (360)
...|++++|++|+||+.+ .+|+|+|++ +++ ...+ . ..+|+|||++.. .+++.++ ..+ +
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 456999999999999998 889999999 553 2221 1 247899999743 3577787 444 5
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
..+.... .....+|+++++++|++|++|.... .....+.+++++++.+.++.+..++..||||++++
T Consensus 120 ~~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~ 186 (319)
T d2dg1a1 120 QDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALST 186 (319)
T ss_dssp EEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred eeeccCC--CcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence 5543322 2245799999999999999986421 12245789999998777777778889999999999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCc-c---ee-eeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKG-K---LE-TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~-~---~~-~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
|++.||++++..++|++|+++..... . .. .......+.||||++|.+|+|||+...
T Consensus 187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------------------- 247 (319)
T d2dg1a1 187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------------------- 247 (319)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-------------------
T ss_pred ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-------------------
Confidence 99999999999999999998643211 1 11 111122345999999999999999987
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC--cccceeeEEEEC--CEEEEEe
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQVD--NHLYVIS 348 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~--~~~~~t~~~~~~--g~Lylgs 348 (360)
.+.|.+|+++|+.+..+.-|... ....++++...+ ..||+.+
T Consensus 248 ---------------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 248 ---------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp ---------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ---------------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 47999999999999999877531 123456666653 5677765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=9.6e-21 Score=167.62 Aligned_cols=219 Identities=17% Similarity=0.214 Sum_probs=162.0
Q ss_pred CCcceEEEcCCCCEEEEe--cCCeEEEEE-CCeeeE------------EE-ecCCeEEEEeCCCcEEEEcCCC-eEEEee
Q 018144 79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVN------------WK-FIDSHLIICDNANGLHKVSEDG-VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~--~~G~I~~~~-~g~~~~------------~~-~~~g~L~v~~~~~gl~~~~~~g-~~~l~~ 141 (360)
.+|++|++|++|++|+++ .+++|.+++ ++.... +. ..+|+|||++..++++++..++ ...+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence 689999999999999986 457888887 332211 11 2468899999888888877444 222211
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~~ 220 (360)
...+..|++|++|++|+||++|.. ..+++++++.+...... ..++..|++++++++|+
T Consensus 94 ---~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~- 152 (260)
T d1rwia_ 94 ---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN- 152 (260)
T ss_dssp ---CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-
T ss_pred ---eeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-
Confidence 122467899999999999998754 45788898875544433 35678999999999997
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
+|+++....+|.+++.++.. ...+.....+.|.++++|++|+|||+...
T Consensus 153 ~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~---------------------------- 201 (260)
T d1rwia_ 153 VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHN---------------------------- 201 (260)
T ss_dssp EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETT----------------------------
T ss_pred Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecC----------------------------
Confidence 89999999999999976532 22222223346999999999999999986
Q ss_pred cccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 301 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|+++++++.....+.. .+ +..++++..+ +|+||+++..+++|.++.
T Consensus 202 ------~~~i~~~~~~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 202 ------TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp ------TTEEEEECTTCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ------CCEEEEEeCCCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 3689999998876554432 22 4567888887 489999999999999986
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.86 E-value=1.2e-19 Score=164.05 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=159.5
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE-CCeeeEEE-----------ecCCeEEEEeCCC-cEEEEc---C
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWK-----------FIDSHLIICDNAN-GLHKVS---E 133 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~~~-----------~~~g~L~v~~~~~-gl~~~~---~ 133 (360)
..++.+ .-||++++++||+||+++ .+++|++++ +|+.+.+. ..+|+|||++... .+..++ .
T Consensus 22 ~~~p~~--~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~ 99 (302)
T d2p4oa1 22 TSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 99 (302)
T ss_dssp EEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EECCCC--CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence 345544 249999999999999999 689999999 77655432 2478899988663 455555 3
Q ss_pred CC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--------
Q 018144 134 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------- 204 (360)
Q Consensus 134 ~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-------- 204 (360)
++ .+.+..... ...+|+++++++|++|++|.. .+.++++|+.++.......
T Consensus 100 ~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (302)
T d2p4oa1 100 DGTVETLLTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSN 159 (302)
T ss_dssp TSCEEEEEECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred ccceeeccccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceee
Confidence 44 555544322 246899999999999999764 4688999988776554321
Q ss_pred ---CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc-CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHH
Q 018144 205 ---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKI 280 (360)
Q Consensus 205 ---~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~-~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~ 280 (360)
....+||+..+ ++.+|++++..++|++++.++.. ......+. ....||++++|++|+||++...
T Consensus 160 ~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~-------- 227 (302)
T d2p4oa1 160 SESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHI-------- 227 (302)
T ss_dssp TTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBT--------
T ss_pred ccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcC--------
Confidence 23467888765 45799999999999999987542 22333332 2246999999999999999876
Q ss_pred hhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-----CCEEEEEeCCCC
Q 018144 281 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-----DNHLYVISLTSN 352 (360)
Q Consensus 281 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-----~g~Lylgs~~~~ 352 (360)
.+.|.+++++|+.........+ ...++++.+. ++.||+++..+.
T Consensus 228 --------------------------~~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g~ 276 (302)
T d2p4oa1 228 --------------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGGM 276 (302)
T ss_dssp --------------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTTS
T ss_pred --------------------------CCcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCCc
Confidence 3689999999998777665544 3567888873 267999976543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.82 E-value=5.5e-18 Score=151.15 Aligned_cols=224 Identities=13% Similarity=0.226 Sum_probs=159.2
Q ss_pred CCCCCcceEEEcCCCCEEEEe-cCCeEEEEE-CCeeeE-EE------------------ecCCeEEEE-eCCC-cEEEEc
Q 018144 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVN-WK------------------FIDSHLIIC-DNAN-GLHKVS 132 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~-~~------------------~~~g~L~v~-~~~~-gl~~~~ 132 (360)
|.+..|.+|++|++|+||+++ .+.+|.+++ +|+... +. ...+..+++ +..+ .+..++
T Consensus 20 g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (279)
T d1q7fa_ 20 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 99 (279)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence 458899999999999999998 788999999 775432 10 112333333 3222 344455
Q ss_pred CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCc
Q 018144 133 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFA 209 (360)
Q Consensus 133 ~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~p 209 (360)
.+| .... .....+..|.+++++++|++|++|.. .+.+.+++++...+..+ ...+..|
T Consensus 100 ~~g~~~~~---~~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 100 QYGQFVRK---FGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFP 159 (279)
T ss_dssp TTSCEEEE---ECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred ccccceee---cCCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeeccccccccccc
Confidence 555 3221 12223467899999999999998764 45788999874433433 2356789
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 288 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r 288 (360)
++++++++++ +|+++...++|.+|+.+|.... .+.. .....|.+|++|++|+|||+....
T Consensus 160 ~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~~~---~~g~~g~~~~P~giavD~~G~i~Vad~~~--------------- 220 (279)
T d1q7fa_ 160 NGVVVNDKQE-IFISDNRAHCVKVFNYEGQYLR---QIGGEGITNYPIGVGINSNGEILIADNHN--------------- 220 (279)
T ss_dssp EEEEECSSSE-EEEEEGGGTEEEEEETTCCEEE---EESCTTTSCSEEEEEECTTCCEEEEECSS---------------
T ss_pred ceeeecccee-EEeeeccccceeeeecCCceee---eecccccccCCcccccccCCeEEEEECCC---------------
Confidence 9999999985 9999999999999998875322 2221 122369999999999999998641
Q ss_pred HHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 289 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
...|..++++|+.+..+..+.. ...+++++.. +|+||+++ .+++|.+++.
T Consensus 221 ------------------~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~ 271 (279)
T d1q7fa_ 221 ------------------NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRY 271 (279)
T ss_dssp ------------------SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred ------------------CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence 2468899999998888865432 2457777666 59999998 5899999874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=8.8e-17 Score=141.71 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=125.7
Q ss_pred CCCCCcceEEEcCCCCEEEEecCCeEEEEE-CCee------------eEEE-ecCCeEEEEeCC-CcEEEEcCCC-eEEE
Q 018144 76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW------------VNWK-FIDSHLIICDNA-NGLHKVSEDG-VENF 139 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~------------~~~~-~~~g~L~v~~~~-~gl~~~~~~g-~~~l 139 (360)
+.+..|++|++|++|+||+++..+.+.++. ++.. ..+. ..+|+||+++.. ..+++++..+ ....
T Consensus 54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~ 133 (260)
T d1rwia_ 54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 133 (260)
T ss_dssp CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE
T ss_pred CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeee
Confidence 446789999999999999999777666665 3311 1122 346789999866 3566777444 3222
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg 218 (360)
. ....+..|++|+++++|++|++|.. .++|+++|+++.....+. ..+..|+|++++++|
T Consensus 134 ~---~~~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g 193 (260)
T d1rwia_ 134 L---PFTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG 193 (260)
T ss_dssp C---CCCSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred e---eecccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeeeee
Confidence 1 1122467899999999999999754 468999998755444433 568899999999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+ |||++..+++|.+|+.++.. ...+.......|.+|++|++|+|||+...
T Consensus 194 ~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 194 T-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp C-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred e-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence 7 99999999999999876532 22222222236999999999999999876
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.48 E-value=1.1e-12 Score=118.44 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=105.9
Q ss_pred CCCcceEEEcCCCCEEEEec----------------CCeEEEEE-CCeeeEEE------------ecC-C---eEEEEeC
Q 018144 78 VNHPEDASMDKNGVIYTATR----------------DGWIKRLQ-DGTWVNWK------------FID-S---HLIICDN 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~----------------~G~I~~~~-~g~~~~~~------------~~~-g---~L~v~~~ 124 (360)
+.+|.++++|++|+||+++. .|+|++++ +|+...+. ..+ + .|||++.
T Consensus 116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~ 195 (314)
T d1pjxa_ 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEee
Confidence 45799999999999999863 35799998 77644321 111 1 5999987
Q ss_pred C-CcEEEEc--CCC-eEE--EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe
Q 018144 125 A-NGLHKVS--EDG-VEN--FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI 198 (360)
Q Consensus 125 ~-~gl~~~~--~~g-~~~--l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~ 198 (360)
. +.+++++ .+| +.. +.....+.....|++|++|++|+||+++.. .++|++|||++++
T Consensus 196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGGQ 258 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCBS
T ss_pred cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCCE
Confidence 6 4577877 455 321 222223333346899999999999998643 5789999999776
Q ss_pred EEE-EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 199 TTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 199 ~~~-~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
... +......|.++++.+|++.|||+++.+++|++++..
T Consensus 259 ~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 543 444567889999999999999999999999999975
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.47 E-value=1.7e-12 Score=116.27 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=117.8
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++.++++++||+||+||.. .++|+++|++ ++.+.+......|+++++++||+ +|+++...
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~ 88 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA 88 (302)
T ss_dssp CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred CCcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence 36889999999999999764 5789999998 66666666667899999999998 99998888
Q ss_pred CEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 229 FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
+.+.+++..+.. +....+.+. ....|+++++|++|++|++... .
T Consensus 89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~----------------------------------~ 133 (302)
T d2p4oa1 89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSY----------------------------------R 133 (302)
T ss_dssp TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETT----------------------------------T
T ss_pred ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeeccc----------------------------------c
Confidence 888888876532 233333322 2346889999999999999876 4
Q ss_pred eEEEEECCCCcEEEEE-eCCCC------CcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 308 AHLIHVAEDGTIIRNL-VDPTG------QLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~-~~~~g------~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
+.++++++++.....+ .++.. ........+..++++||++....+.|.+++++
T Consensus 134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence 6889999876554443 22211 11233456677789999999999999998753
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6e-11 Score=104.11 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=127.7
Q ss_pred CCeEEEEeCCC-cEEEEcCCC------eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCcc
Q 018144 116 DSHLIICDNAN-GLHKVSEDG------VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHG 187 (360)
Q Consensus 116 ~g~L~v~~~~~-gl~~~~~~g------~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g 187 (360)
+++||+++... .+++.+-++ .+.+.. ..+..|.+|++|. .++||++|.. .+
T Consensus 41 ~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~~~~p~glAvD~~~~~lY~~d~~-----------------~~ 99 (266)
T d1ijqa1 41 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LG 99 (266)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-----------------TT
T ss_pred CCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CCCCCcceEEEeeccceEEEEecC-----------------CC
Confidence 56677777553 355544111 222211 1134688999995 5689999865 45
Q ss_pred EEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-
Q 018144 188 QLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG- 264 (360)
Q Consensus 188 ~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G- 264 (360)
+|.+++.++..... +..++..|.++++++....+||++.+. .+|.|.+++|.. .+.+....-..|.++++|..+
T Consensus 100 ~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~~~~~p~gl~iD~~~~ 176 (266)
T d1ijqa1 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSG 176 (266)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTT
T ss_pred EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---eecccccccceeeEEEeecccc
Confidence 78888887554433 445678899999999877899999754 589999998742 233332333469999999754
Q ss_pred CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE-EeCCCCCcccceeeEEEECCE
Q 018144 265 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN-LVDPTGQLMSFVTSGLQVDNH 343 (360)
Q Consensus 265 ~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-~~~~~g~~~~~~t~~~~~~g~ 343 (360)
+||++... .+.|.+++.+|.-... +....+ ...+.++..++++
T Consensus 177 ~lYw~d~~----------------------------------~~~I~~~~~dG~~~~~~~~~~~~--~~~p~~lav~~~~ 220 (266)
T d1ijqa1 177 RLYWVDSK----------------------------------LHSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDK 220 (266)
T ss_dssp EEEEEETT----------------------------------TTEEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTE
T ss_pred EEEEecCC----------------------------------cCEEEEEECCCCCEEEEEeCCCc--ccccEEEEEECCE
Confidence 69998765 3588999988864333 343333 4567788888999
Q ss_pred EEEEeCCCCeEEEEeC
Q 018144 344 LYVISLTSNFIGKVQL 359 (360)
Q Consensus 344 Lylgs~~~~~i~~~~l 359 (360)
||+++...+.|.++++
T Consensus 221 ly~td~~~~~I~~~~~ 236 (266)
T d1ijqa1 221 VFWTDIINEAIFSANR 236 (266)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEEC
Confidence 9999999999999874
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.45 E-value=2.4e-12 Score=116.24 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=113.7
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCC-
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW- 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~- 227 (360)
...++++|++|+||++|.. .++|+++++++++... .......|+|+++++||+ +|+++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~-----------------~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~ 102 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVF-----------------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD 102 (319)
T ss_dssp CEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT
T ss_pred CcEeCEECCCCCEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCC
Confidence 3478999999999999854 5799999998776544 455667899999999997 8888754
Q ss_pred ---CCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 228 ---KFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 228 ---~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
..++.+++.++.... ...+. ....|+++++|++|++|++.....
T Consensus 103 ~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~---------------------------- 151 (319)
T d2dg1a1 103 FKSTGGIFAATENGDNLQ---DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY---------------------------- 151 (319)
T ss_dssp SSSCCEEEEECTTSCSCE---EEECSSSSCCCEEEEEECTTSCEEEEECCCB----------------------------
T ss_pred CccceeEEEEcCCCceee---eeccCCCcccCCcceeEEeccceeecccccc----------------------------
Confidence 346777776543322 22211 223588999999999999986521
Q ss_pred cCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 303 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 303 ~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
.....+.+++++++|+.+..+... +..+.++... ++.||++....++|.+++++
T Consensus 152 ~~~~~g~v~~~~~dg~~~~~~~~~----~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 152 STNPLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cccCcceeEEEecccceeEEEeec----cceeeeeeeccccceEEEecccCCceEEEEEc
Confidence 122357899999998765554321 3345666665 35799999999999999763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.2e-11 Score=105.86 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=121.4
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe-----ee-----------EEEe--cCCeEEEEeCCC-cEEEEcCCC
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-----WV-----------NWKF--IDSHLIICDNAN-GLHKVSEDG 135 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~-----~~-----------~~~~--~~g~L~v~~~~~-gl~~~~~~g 135 (360)
+..|.+|.+|. ++.||+++ ..+.|++.+ ++. .+ .++. .+++||+++... .+.+++.+|
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 57888999995 67899998 678899887 431 11 1222 368899999775 455666555
Q ss_pred --eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcce
Q 018144 136 --VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANG 211 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~png 211 (360)
.+.+... + ...|.+|++|+ .|.+|++|.+ ..++|++.+.+....+.+. .++..|+|
T Consensus 109 ~~~~~~~~~--~--~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~g 168 (266)
T d1ijqa1 109 VKRKTLFRE--N--GSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNG 168 (266)
T ss_dssp SSEEEEEEC--T--TCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred ceEEEEEcC--C--CCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceeeE
Confidence 3333221 1 24688999997 6899999854 2358999998755555544 56889999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++++.++.|||++...++|.+++++|... +.+... ....|.+++++ +++||++...
T Consensus 169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~-~~~ly~td~~ 227 (266)
T d1ijqa1 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDII 227 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred EEeeccccEEEEecCCcCEEEEEECCCCCE---EEEEeCCCcccccEEEEEE-CCEEEEEECC
Confidence 999999889999999999999999987432 222212 12358899999 4789999876
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=3.6e-11 Score=105.38 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=135.1
Q ss_pred CCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCe-eeE-----------EEe--cCCeEEEEeCCC-cEEEEcCCC--eEE
Q 018144 79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVN-----------WKF--IDSHLIICDNAN-GLHKVSEDG--VEN 138 (360)
Q Consensus 79 ~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~-~~~-----------~~~--~~g~L~v~~~~~-gl~~~~~~g--~~~ 138 (360)
..+.+|++|. ++.||+++ ..+.|++.+ +|. .+. ++. .+++||+++... .+.+++.+| .+.
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 3456788884 78899998 678899998 542 221 222 267899998764 566777555 444
Q ss_pred EeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE-eCCCcCcceEEEec
Q 018144 139 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR 216 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~-~~~l~~pngia~~~ 216 (360)
+... .+..|.+|++|+ .|.+|+++.. ....+|++.+.+....+.+ ..++..|+|+++++
T Consensus 116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~ 176 (263)
T d1npea_ 116 LFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176 (263)
T ss_dssp EECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred Eecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence 4322 134689999997 5689998854 1235799998875444443 45788999999999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
.++.|||++...++|.+++++|.. .+.+...++ .|.+|+++ ++.||++...
T Consensus 177 ~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~~-~P~~lav~-~~~lYwtd~~------------------------ 227 (263)
T d1npea_ 177 FSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQ-YPFAVTSY-GKNLYYTDWK------------------------ 227 (263)
T ss_dssp TTTEEEEEETTTTEEEEEETTEEE---EEEEEECCC-SEEEEEEE-TTEEEEEETT------------------------
T ss_pred cCcEEEEEeCCCCEEEEEECCCCC---eEEEECCCC-CcEEEEEE-CCEEEEEECC------------------------
Confidence 988999999999999999998742 233333333 68899998 5789999877
Q ss_pred cccccccCCCceEEEEECCC-CcEEEEEeC
Q 018144 297 LFSQFITLGGGAHLIHVAED-GTIIRNLVD 325 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~ 325 (360)
.+.|.+++.. |+.+..+..
T Consensus 228 ----------~~~I~~~~~~~g~~~~~~~~ 247 (263)
T d1npea_ 228 ----------TNSVIAMDLAISKEMDTFHP 247 (263)
T ss_dssp ----------TTEEEEEETTTTEEEEEECC
T ss_pred ----------CCEEEEEECCCCccceEECC
Confidence 3689999974 777766654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=9.7e-11 Score=102.56 Aligned_cols=183 Identities=10% Similarity=0.154 Sum_probs=132.5
Q ss_pred cCCeEEEEeCCC-cEEEEcCCC--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEE
Q 018144 115 IDSHLIICDNAN-GLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 115 ~~g~L~v~~~~~-gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
.+++||+++... .|.+++-+| .+.+... .+..|.+|++|. .++||++|.. .++|.
T Consensus 46 ~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~~~~p~~iAvD~~~~~lY~~d~~-----------------~~~I~ 104 (263)
T d1npea_ 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----DLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIE 104 (263)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECT----TCCCEEEEEEETTTTEEEEEETT-----------------TTEEE
T ss_pred CCCEEEEEECCCCeEEEEEcccCCcEEEEEe----ccccccEEEEeccCCeEEEeccC-----------------CCEEE
Confidence 367899998775 477777333 4444322 124688999995 6689999754 45899
Q ss_pred EEcCCCCeEEEE-eCCCcCcceEEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CE
Q 018144 191 KYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TF 266 (360)
Q Consensus 191 ~~d~~tg~~~~~-~~~l~~pngia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~l 266 (360)
+++++....+.+ ..++..|.+++++|.+..+|+++.+. .+|+|.+++|... +.+....-..|.+|++|..+ .|
T Consensus 105 ~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---~~i~~~~~~~P~glaiD~~~~~l 181 (263)
T d1npea_ 105 VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQL 181 (263)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEE
T ss_pred EEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---eeeeeecccccceEEEeecCcEE
Confidence 998875554444 35678999999999988999998764 4699999987432 22222223469999999654 69
Q ss_pred EEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEE
Q 018144 267 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYV 346 (360)
Q Consensus 267 wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lyl 346 (360)
|++... .+.|.+++.+|...+.+-. + ...+.++..++++||+
T Consensus 182 Yw~d~~----------------------------------~~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYw 223 (263)
T d1npea_ 182 CWVDAG----------------------------------THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYY 223 (263)
T ss_dssp EEEETT----------------------------------TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEE
T ss_pred EEEeCC----------------------------------CCEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEE
Confidence 888765 3588999999876655432 2 2356778888999999
Q ss_pred EeCCCCeEEEEeC
Q 018144 347 ISLTSNFIGKVQL 359 (360)
Q Consensus 347 gs~~~~~i~~~~l 359 (360)
++...+.|.++++
T Consensus 224 td~~~~~I~~~~~ 236 (263)
T d1npea_ 224 TDWKTNSVIAMDL 236 (263)
T ss_dssp EETTTTEEEEEET
T ss_pred EECCCCEEEEEEC
Confidence 9999999999876
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.38 E-value=5.1e-11 Score=105.14 Aligned_cols=189 Identities=14% Similarity=0.210 Sum_probs=131.9
Q ss_pred ecCCeEEEEeCC-CcEEEEcCCC--eEEEeeccC-CccccccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccE
Q 018144 114 FIDSHLIICDNA-NGLHKVSEDG--VENFLSYVN-GSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 114 ~~~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~~-~~~~~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
..+|+|||+|.. +.|.+++.+| ++.+.+... ......|.+++.+.+ |..+++..+ .++.
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----------------~~~~ 94 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------------PTHQ 94 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------------GGCE
T ss_pred cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----------------Cccc
Confidence 357899999976 5688888777 444433221 223346788887654 455554322 3457
Q ss_pred EEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCE
Q 018144 189 LLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 189 l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~l 266 (360)
|.+++++......+. ..+..|++++++++|+ +|+++....++.+++.++.... .+. ......|.++++|++|++
T Consensus 95 i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~i~~d~~g~i 170 (279)
T d1q7fa_ 95 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLH---KFGCSKHLEFPNGVVVNDKQEI 170 (279)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEE---EEECTTTCSSEEEEEECSSSEE
T ss_pred cccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCceee---cccccccccccceeeeccceeE
Confidence 888888633333332 3467899999999997 8999998899999998764322 221 122346889999999999
Q ss_pred EEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEE
Q 018144 267 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLY 345 (360)
Q Consensus 267 wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Ly 345 (360)
|++... .+.|.+++++|+.+..+..+ |. +..+.++..+ +|+||
T Consensus 171 ~v~d~~----------------------------------~~~V~~~d~~G~~~~~~g~~-g~-~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 171 FISDNR----------------------------------AHCVKVFNYEGQYLRQIGGE-GI-TNYPIGVGINSNGEIL 214 (279)
T ss_dssp EEEEGG----------------------------------GTEEEEEETTCCEEEEESCT-TT-SCSEEEEEECTTCCEE
T ss_pred Eeeecc----------------------------------ccceeeeecCCceeeeeccc-cc-ccCCcccccccCCeEE
Confidence 999876 36899999999998887543 33 5678888776 58999
Q ss_pred EEeCCCC-eEEEEe
Q 018144 346 VISLTSN-FIGKVQ 358 (360)
Q Consensus 346 lgs~~~~-~i~~~~ 358 (360)
++...++ +|.+++
T Consensus 215 Vad~~~~~~v~~f~ 228 (279)
T d1q7fa_ 215 IADNHNNFNLTIFT 228 (279)
T ss_dssp EEECSSSCEEEEEC
T ss_pred EEECCCCcEEEEEC
Confidence 9986554 677765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.15 E-value=2.1e-09 Score=95.44 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=120.0
Q ss_pred eEEEecCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCc
Q 018144 110 VNWKFIDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 110 ~~~~~~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
-.|...+++||..|.. +.|++++ +++ .+.+... ..+..++.+++|++|++. .
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~------~~~~~i~~~~dg~l~va~-------------------~ 77 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVHALP------FMGSALAKISDSKQLIAS-------------------D 77 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------SCEEEEEEEETTEEEEEE-------------------T
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC------CCcEEEEEecCCCEEEEE-------------------e
Confidence 3455567889988865 5799999 666 5554322 136688999999999963 2
Q ss_pred cEEEEEcCCCCeEEEEeCC-----CcCcceEEEecCCCEEEEEeCC------CCEEEEEEecCCcCcceeeeccCCCCCC
Q 018144 187 GQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLPGAP 255 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~-----l~~pngia~~~dg~~l~v~~t~------~~~i~~~~~~g~~~~~~~~~~~~~~g~p 255 (360)
.+++++|+++++.+.+... ...+|.+.++++|+ +|+++.. .+.++++. . +........ ...|
T Consensus 78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~---g~~~~~~~~-~~~~ 150 (295)
T d2ghsa1 78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K---GKVTKLFAD-ISIP 150 (295)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T---TEEEEEEEE-ESSE
T ss_pred CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--C---CcEEEEeec-cCCc
Confidence 3799999999998876532 34689999999997 7777532 23455553 2 222222222 2368
Q ss_pred ceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCcE----EEEEeCCCC
Q 018144 256 DNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTI----IRNLVDPTG 328 (360)
Q Consensus 256 d~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~----~~~~~~~~g 328 (360)
++++++++++ +|++... .+.|++++- ++.. ...+.+..+
T Consensus 151 Ng~~~s~d~~~l~~~dt~----------------------------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~ 196 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTK----------------------------------VNRLMRVPLDARTGLPTGKAEVFIDSTG 196 (295)
T ss_dssp EEEEECTTSCEEEEEETT----------------------------------TCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred ceeeecCCCceEEEeecc----------------------------------cceeeEeeecccccccccceEEEeccCc
Confidence 9999999885 8888765 357777653 2211 122222222
Q ss_pred CcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 329 QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 329 ~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
. ...+.++..+ +|+||++...+..|.+++
T Consensus 197 ~-~g~pdG~~vD~~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 197 I-KGGMDGSVCDAEGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp S-SSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred c-cccccceEEcCCCCEEeeeeCCCceEEec
Confidence 1 2345666666 599999999999999886
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.09 E-value=1.7e-07 Score=81.18 Aligned_cols=219 Identities=13% Similarity=0.127 Sum_probs=142.1
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCeeeE-EE-----------ecCCeEEEEeCCCcEE-EEc-CCC-eEEE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN-WK-----------FIDSHLIICDNANGLH-KVS-EDG-VENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~~~-~~-----------~~~g~L~v~~~~~gl~-~~~-~~g-~~~l 139 (360)
..|.+++++++|. ||++. .++.|..+| +++... +. ..+..++++....+.. .++ .++ ....
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeee
Confidence 5799999999986 77776 688999999 554321 11 1233466666554444 344 444 2222
Q ss_pred eeccCCccccccccEEEcCCCcE-EEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l-~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
... ...+..++++++|.. +++.. ..+.+..++..+++..........|..+++++++
T Consensus 112 ~~~-----~~~~~~~~~~~dg~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
T d1l0qa2 112 VKT-----GKSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG 169 (301)
T ss_dssp EEC-----SSSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred ccc-----cccceEEEeecCCCeeeeeec-----------------cccceeeeeccccceeeecccCCCceEEEeeccc
Confidence 111 124677889999964 44432 2356777888777766555566678999999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
+.+|++......+..++....+ ..... .....|.+++++.+|+ +|++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~------------------------ 221 (301)
T d1l0qa2 170 TKVYVANFDSMSISVIDTVTNS--VIDTV--KVEAAPSGIAVNPEGTKAYVTNVDK------------------------ 221 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTE--EEEEE--ECSSEEEEEEECTTSSEEEEEEECS------------------------
T ss_pred cceeeeccccccccccccccee--eeecc--cccCCcceeeccccccccccccccc------------------------
Confidence 9999998877766666644321 11111 1334588999999996 66665441
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-C-CEEEEEeCCCCeEEEEeCC
Q 018144 298 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~~~~i~~~~l~ 360 (360)
..+.|..+|. +++.+..+.... .+.++... + .+||+++-.++.|.+++++
T Consensus 222 --------~~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 222 --------YFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp --------SCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --------eeeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 1246888885 577777665422 35666665 3 5799999889999998763
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.89 E-value=2.6e-06 Score=77.15 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=99.9
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcC-CCCeEEEE-----eCCCcCcceEEEecCCCEEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNITTLV-----ADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~tg~~~~~-----~~~l~~pngia~~~dg~~l~ 222 (360)
.+.++++++||+ +|++|.+ ...|+.|+. .++..... ......|.+++++||++.+|
T Consensus 146 h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y 208 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY 208 (365)
T ss_dssp CEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred cceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE
Confidence 578999999996 9998754 235555432 23443322 12245799999999999999
Q ss_pred EEeCCCCEEEEEEecCCcCcceee---e---ccCCC----------CCCceeEEcCCCC-EEEEEecCchhHHHHhhcch
Q 018144 223 VCESWKFRCRKYWLKGERKGKLET---F---AENLP----------GAPDNINLAPDGT-FWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~---~---~~~~~----------g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~ 285 (360)
++....+.|..|+.+..+...... . ....+ ..+..|.++++|. +|++.....+.
T Consensus 209 v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~--------- 279 (365)
T d1jofa_ 209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE--------- 279 (365)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT---------
T ss_pred EeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc---------
Confidence 999999999999987543221111 1 00000 1245688999996 78876542100
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE---eCC-CCCcccceeeEEE---ECCEEEEEeCCCCeEEEEe
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL---VDP-TGQLMSFVTSGLQ---VDNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~---~~~-~g~~~~~~t~~~~---~~g~Lylgs~~~~~i~~~~ 358 (360)
....-..++++.+|.+.... ..+ .|. .+..+.. ++..||+++..++.|.+++
T Consensus 280 ------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 280 ------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---HSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---TCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---CccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence 00012446677777654332 222 232 2333443 3467999999999999886
Q ss_pred C
Q 018144 359 L 359 (360)
Q Consensus 359 l 359 (360)
+
T Consensus 339 ~ 339 (365)
T d1jofa_ 339 W 339 (365)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1e-05 Score=70.65 Aligned_cols=227 Identities=13% Similarity=0.123 Sum_probs=127.5
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE---CC-eeeE------------EE-ec-CCeEEEEeCCCcEE-EEc-CCC-
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DG-TWVN------------WK-FI-DSHLIICDNANGLH-KVS-EDG- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~---~g-~~~~------------~~-~~-~g~L~v~~~~~gl~-~~~-~~g- 135 (360)
..|.+|++.+||. ||++. .++.|..++ ++ ..+. +. .+ +..||+++...+.+ .++ .+.
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~ 116 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence 5789999999985 78887 578887665 22 1111 11 12 34588888665443 333 333
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe-EEE------EeCCCc
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTL------VADGFY 207 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~-~~~------~~~~l~ 207 (360)
.......... ...+.++.++++|+ +++++.. ...+..++..+.. ... ......
T Consensus 117 ~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (333)
T d1ri6a_ 117 PVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEGA 177 (333)
T ss_dssp EEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred ceecccccCC--CccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCcceeeeceeeeeecCC
Confidence 2222121111 13577889999996 5555422 2345555443221 111 112345
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCc--CcceeeeccC-----CCCCCceeEEcCCCC-EEEEEecCchhHHH
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAEN-----LPGAPDNINLAPDGT-FWIAIIKLDARRMK 279 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~--~~~~~~~~~~-----~~g~pd~i~~d~~G~-lwva~~~~~~~~~~ 279 (360)
.|..+++++++..+|++....+....+...... .......... ....|..++++++|+ +|++....
T Consensus 178 ~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~------ 251 (333)
T d1ri6a_ 178 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA------ 251 (333)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT------
T ss_pred CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC------
Confidence 688999999999999998877777666654321 1111111110 112456688899996 55554431
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEe-CCCCCcccceeeEEEE--CCEEEEEeCCCCeEEE
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV-DPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGK 356 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~-~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~ 356 (360)
....++.++.++....... .+.+ ..+..+... +.+||+++-.++.|.+
T Consensus 252 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 252 --------------------------SLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp --------------------------TEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred --------------------------CeEEEEEEcCCCCEEEEEEEeCCC---CCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence 1235667777765443332 1222 134445554 4679999888898888
Q ss_pred EeC
Q 018144 357 VQL 359 (360)
Q Consensus 357 ~~l 359 (360)
+.+
T Consensus 303 ~~i 305 (333)
T d1ri6a_ 303 YEI 305 (333)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.67 E-value=3.8e-06 Score=78.34 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=97.5
Q ss_pred ceEecCCCCCCcceEEEcCCCCEEEEec-CCeEEEEE--CCeeeEEEe------------------------cCCeEEEE
Q 018144 70 FIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKF------------------------IDSHLIIC 122 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~--~g~~~~~~~------------------------~~g~L~v~ 122 (360)
.+++.++ +..|.+|++.++|.||++.. .|+|++++ +++.+.+.. .++.+|++
T Consensus 19 ~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 19 KKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp EEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 3556665 89999999999999999995 79999998 554333221 12446664
Q ss_pred eCC-----------C--cEEEEc--CCC--e---EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccce-----
Q 018144 123 DNA-----------N--GLHKVS--EDG--V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC----- 177 (360)
Q Consensus 123 ~~~-----------~--gl~~~~--~~g--~---~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~----- 177 (360)
-.. + -+.++. .+. . +.+.........+.-..|++++||.|||+-...........
T Consensus 98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~ 177 (450)
T d1crua_ 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQ 177 (450)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCC
T ss_pred EecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccccc
Confidence 210 0 022222 111 1 11222222222345678999999999998754221100000
Q ss_pred -----ec-----ccccCCccEEEEEcCCCCe-----------EEEEeCCCcCcceEEEecCCCEEEEEeCCC---CEEEE
Q 018144 178 -----LD-----ILEGKPHGQLLKYDPSSNI-----------TTLVADGFYFANGVALSRDEDYVVVCESWK---FRCRK 233 (360)
Q Consensus 178 -----~~-----~~~~~~~g~l~~~d~~tg~-----------~~~~~~~l~~pngia~~~dg~~l~v~~t~~---~~i~~ 233 (360)
.. --.....|.|+|++++... .+.+..++..|.|++++++|+ ||++|.+. ..|.+
T Consensus 178 ~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G~~~~dEln~ 256 (450)
T d1crua_ 178 AQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPNSDDEINL 256 (450)
T ss_dssp TTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSSSCEEEEE
T ss_pred cccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeeccccccccccccc
Confidence 00 0011235899999986332 145778899999999999887 99998753 34555
Q ss_pred E
Q 018144 234 Y 234 (360)
Q Consensus 234 ~ 234 (360)
+
T Consensus 257 i 257 (450)
T d1crua_ 257 I 257 (450)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.66 E-value=3.9e-06 Score=72.14 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=86.8
Q ss_pred EEEEeCC-CcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 119 LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 119 L~v~~~~-~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
+||++.. +.|..+| +++ ...+... ..|.++++++||+ ||+++.. .+.|..+|
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g------~~p~~va~spdG~~l~v~~~~-----------------~~~i~v~d 60 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANAH-----------------SNDVSIID 60 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEECC------CCceEEEEeCCCCEEEEEECC-----------------CCEEEEEE
Confidence 5777655 4477777 666 3333211 2478999999996 7887543 56899999
Q ss_pred CCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 194 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 194 ~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
..+++..........|.+++++++++.++++......+..++....+ ....+ .....|..+.++++|+.++..
T Consensus 61 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~dg~~~~~~ 133 (301)
T d1l0qa2 61 TATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTV--KTGKSPLGLALSPDGKKLYVT 133 (301)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE--ECSSSEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeeccccccccccccccccccccccccceeeecccccce--eeeec--cccccceEEEeecCCCeeeee
Confidence 99888766555566899999999999999999888888888865422 11122 123346778889999755443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.60 E-value=9.2e-06 Score=73.44 Aligned_cols=152 Identities=7% Similarity=0.030 Sum_probs=84.0
Q ss_pred CCeEEEEeCCC-cEEEEcCCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDNAN-GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~~~-gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+..||+++.+. ..+.+++++ .........+ ..|..++++++|+ +|++..+..-+ .-+...+......+.++.+
T Consensus 51 ~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~p~~v~~~~~~~~~~v~~a~~~~~-~v~~~~~~~~~~~~~~~~~ 126 (365)
T d1jofa_ 51 RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPY-AVYANPFYKFAGYGNVFSV 126 (365)
T ss_dssp SSEEEEEEBTEEEEEEEEETTEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTC-CEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEEeCCcEEEEEEeCCCCeEEEeeecCC---CCcEEEEECCCCCEEEEEEecCCCC-EEEEeEccCCCCcceeEee
Confidence 34588876442 233444444 3333221112 2477888898884 77776542100 0011111111223456666
Q ss_pred cCCCCeEEEE-----eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccC-CCCCCceeEEcCCCC
Q 018144 193 DPSSNITTLV-----ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAEN-LPGAPDNINLAPDGT 265 (360)
Q Consensus 193 d~~tg~~~~~-----~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~-~~g~pd~i~~d~~G~ 265 (360)
+.. ++.... .....+|++++++|||+++|+++.+..+|++|+.+.. +.......... ....|..++++++|+
T Consensus 127 ~~~-~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~ 205 (365)
T d1jofa_ 127 SET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN 205 (365)
T ss_dssp CTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred eec-ceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCc
Confidence 543 333221 1234578899999999999999999999999986532 11111222111 223588999999997
Q ss_pred -EEEEEec
Q 018144 266 -FWIAIIK 272 (360)
Q Consensus 266 -lwva~~~ 272 (360)
+|++...
T Consensus 206 ~~yv~~e~ 213 (365)
T d1jofa_ 206 YLYALMEA 213 (365)
T ss_dssp EEEEEETT
T ss_pred eEEEeccC
Confidence 6666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=5.1e-05 Score=65.93 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=82.1
Q ss_pred eEEEEeCC-CcEEEEc--CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEE--E
Q 018144 118 HLIICDNA-NGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL--L 190 (360)
Q Consensus 118 ~L~v~~~~-~gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l--~ 190 (360)
.+||++.. +.+..++ .++ ++.+.....+ ..+.+|++++||+ ||++... .+.| +
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---~~v~~la~spDG~~L~v~~~~-----------------d~~i~~~ 64 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVVSPDKRYLYVGVRP-----------------EFRVLAY 64 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEECTTSSEEEEEETT-----------------TTEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC---CCEeEEEEeCCCCEEEEEECC-----------------CCeEEEE
Confidence 46777754 3444454 344 4443221111 3578999999995 8887532 3444 4
Q ss_pred EEcCCCCeEEEEe--CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EE
Q 018144 191 KYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FW 267 (360)
Q Consensus 191 ~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lw 267 (360)
.+++.+...+... .....|.++++++||+.||++......+..+..+.......... ...+..|..+.++++|+ ++
T Consensus 65 ~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 65 RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp EECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEE
T ss_pred EEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc-cCCCccceEEEeeecceeee
Confidence 5555544444332 23456899999999999999998888888877654322222222 13444688899999997 44
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
++...
T Consensus 144 ~~~~~ 148 (333)
T d1ri6a_ 144 VPALK 148 (333)
T ss_dssp EEEGG
T ss_pred ccccc
Confidence 44433
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.45 E-value=5.5e-05 Score=65.52 Aligned_cols=136 Identities=11% Similarity=-0.052 Sum_probs=79.5
Q ss_pred EEEEecCCeEEEEE--CCeeeE-------------EEe-cCC-eEEEEeCC-CcEEEEc-CCC--eEEEeeccCCccccc
Q 018144 92 IYTATRDGWIKRLQ--DGTWVN-------------WKF-IDS-HLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 150 (360)
Q Consensus 92 l~v~~~~G~I~~~~--~g~~~~-------------~~~-~~g-~L~v~~~~-~gl~~~~-~~g--~~~l~~~~~~~~~~~ 150 (360)
+++++.++.|..+| +++... +.. ++| .|||+... +.+..+| .++ ...+...........
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 45555666777666 443221 111 244 47777654 4577778 666 333322222223356
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
+.+++++++|. +|++..... ..........+.+..+|..+++..........+.++++++||+.+|++...
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-- 155 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVR------LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD-- 155 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEE------ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--
T ss_pred eeeEEEcCCCcEEEEeecCCc------ceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--
Confidence 88999999995 666543210 000011122457788898888776655556678999999999988887532
Q ss_pred EEEEEEe
Q 018144 230 RCRKYWL 236 (360)
Q Consensus 230 ~i~~~~~ 236 (360)
+..++.
T Consensus 156 -~~~~d~ 161 (337)
T d1pbyb_ 156 -LHVMDP 161 (337)
T ss_dssp -EEEEET
T ss_pred -cceeee
Confidence 444554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.33 E-value=8.4e-05 Score=68.43 Aligned_cols=135 Identities=9% Similarity=-0.101 Sum_probs=84.1
Q ss_pred CCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEE----EcCCCc-EEEEeCCCCCCCccceecccccCCccE
Q 018144 116 DSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVV----EASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~----~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
+..||+++.++.+..++ .++ .+.......+ ..+.+++ +++||+ +|++... .+.
T Consensus 73 G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~---~~~~~~~~s~~~SpDG~~l~vs~~~-----------------~~~ 132 (432)
T d1qksa2 73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQ 132 (432)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTE
T ss_pred CCEEEEEcCCCCEEEEEeeCCCceEEEEEecC---CCCCCeEEecccCCCCCEEEEEcCC-----------------CCe
Confidence 44688888777777788 555 3222111111 1233443 456895 7886432 467
Q ss_pred EEEEcCCCCeEEEEeCC------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCc
Q 018144 189 LLKYDPSSNITTLVADG------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD 256 (360)
Q Consensus 189 l~~~d~~tg~~~~~~~~------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd 256 (360)
+..+|.++++....... .....++++++||..++++....+.|..++....+......+ .....|.
T Consensus 133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~ 210 (432)
T d1qksa2 133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLH 210 (432)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEE
T ss_pred EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccc
Confidence 88899888876543221 123456889999999999998889999998754322222122 1223688
Q ss_pred eeEEcCCCC-EEEEEec
Q 018144 257 NINLAPDGT-FWIAIIK 272 (360)
Q Consensus 257 ~i~~d~~G~-lwva~~~ 272 (360)
++.++++|+ ++++...
T Consensus 211 ~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 211 DGGLDGSHRYFITAANA 227 (432)
T ss_dssp EEEECTTSCEEEEEEGG
T ss_pred cceECCCCCEEEEeccc
Confidence 999999997 5666554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=0.00069 Score=59.19 Aligned_cols=212 Identities=12% Similarity=0.035 Sum_probs=123.7
Q ss_pred ceEEEcCCCCEE-EEecCCeEEEEE-CC-e--ee-E----------EE-ecCCe-EEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 82 EDASMDKNGVIY-TATRDGWIKRLQ-DG-T--WV-N----------WK-FIDSH-LIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 82 e~i~~d~~G~l~-v~~~~G~I~~~~-~g-~--~~-~----------~~-~~~g~-L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
.++++.++|... +++.+|.|..++ .. . .. . +. .+++. +..+..+..+..++ .++ ......
T Consensus 101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~ 180 (337)
T d1gxra_ 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180 (337)
T ss_dssp EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578888887654 556889888887 32 1 11 1 11 12333 44444445566666 555 322211
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l 221 (360)
... ..+..+++.++|...++ +...+.+..+|..+++.............++++++++.+
T Consensus 181 ~~~----~~v~~l~~s~~~~~~~~-----------------~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 181 GHT----DGASCIDISNDGTKLWT-----------------GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp CCS----SCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ccc----ccccccccccccccccc-----------------ccccccccccccccceeecccccccceEEEEEccccccc
Confidence 111 24667888888865553 223567888888777654433333456789999999877
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
+++.. .+.+..++.+.... .... ...+....+.+.++|++.++...
T Consensus 240 ~~~~~-d~~i~i~d~~~~~~--~~~~--~~~~~i~~v~~s~~g~~l~s~s~----------------------------- 285 (337)
T d1gxra_ 240 AVGME-SSNVEVLHVNKPDK--YQLH--LHESCVLSLKFAYCGKWFVSTGK----------------------------- 285 (337)
T ss_dssp EEEET-TSCEEEEETTSSCE--EEEC--CCSSCEEEEEECTTSSEEEEEET-----------------------------
T ss_pred ceecc-cccccccccccccc--cccc--ccccccceEEECCCCCEEEEEeC-----------------------------
Confidence 66554 56788888764321 1111 12334567888999987765543
Q ss_pred ccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-CC-EEEEEeCCCCeEEEEeC
Q 018144 302 ITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 302 ~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+| .+++.+..+... ..++++... ++ .|..|+ ....|.+++|
T Consensus 286 -----Dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~s-~D~~I~vWdl 335 (337)
T d1gxra_ 286 -----DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGS-GDKKATVYEV 335 (337)
T ss_dssp -----TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred -----CCeEEEEECCCCCEEEEccCC-----CCEEEEEEeCCCCEEEEEe-CCCeEEEEEE
Confidence 24666676 467777665532 246666665 34 455554 4556766654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.21 E-value=0.00016 Score=61.91 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=99.0
Q ss_pred eEecCCCCCCcceEEEcCCCCE-EEEecCCeEEEEE--CCeee------------EEE-ecCCeEEEEeCCCcEEEEc-C
Q 018144 71 IKVGEGSVNHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTWV------------NWK-FIDSHLIICDNANGLHKVS-E 133 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l-~v~~~~G~I~~~~--~g~~~------------~~~-~~~g~L~v~~~~~gl~~~~-~ 133 (360)
.++..|=-..-.++++.++|.+ ..|+.||.|..++ +++.. .+. .++|+++++..+..+..++ .
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence 3444444445667889888865 4556889888888 44322 111 2356777777666666666 2
Q ss_pred CC-eE---EEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc
Q 018144 134 DG-VE---NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 209 (360)
Q Consensus 134 ~g-~~---~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p 209 (360)
.. .. ...... ...+..+++.++|.+.++.. .+.+..++. ++...... ....
T Consensus 85 ~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~~~~------------------~~~i~~~~~--~~~~~~~~-~~~~ 139 (299)
T d1nr0a2 85 GSGVDSSKAVANKL----SSQPLGLAVSADGDIAVAAC------------------YKHIAIYSH--GKLTEVPI-SYNS 139 (299)
T ss_dssp SSSSCTTSCCEEEC----SSCEEEEEECTTSSCEEEEE------------------SSEEEEEET--TEEEEEEC-SSCE
T ss_pred Cccccccccccccc----cccccccccccccccccccc------------------ccccccccc--cccccccc-cccc
Confidence 11 11 111111 12456788888887666422 245666764 33333322 2346
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
..++++++++.++++.. .+.|..+++++.+....... ........++++++|.+.++..
T Consensus 140 ~~~~~s~~~~~l~~g~~-dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 198 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQ-DSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATD 198 (299)
T ss_dssp EEEEECTTSCEEEEEET-TSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccc-cccccccccccccccccccc--cccccccccccccccccccccc
Confidence 77899999986665554 57899998865433222222 1223356677888887655443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.19 E-value=0.00085 Score=58.28 Aligned_cols=223 Identities=14% Similarity=0.083 Sum_probs=126.2
Q ss_pred CCcceEEEcCCCCEE-EEecCCeEEEEE--CCe--ee-EEE----------e-cCCe-EEEEeCC-Cc-EEEEc-CCC--
Q 018144 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT--WV-NWK----------F-IDSH-LIICDNA-NG-LHKVS-EDG-- 135 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~-v~~~~G~I~~~~--~g~--~~-~~~----------~-~~g~-L~v~~~~-~g-l~~~~-~~g-- 135 (360)
..-.++++.++|++. +|+.+|.|..++ +++ .. .+. . +++. |.++..+ .. +..++ +++
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~ 138 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence 445777888888765 455899888887 332 11 111 1 1333 3333322 11 22233 333
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVA 213 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia 213 (360)
...+ .+. ...++.+++.++|. +.+| +...+.|..+|..+++....... ....+.++
T Consensus 139 ~~~l----~~h-~~~v~~v~~~~~~~~~l~s-----------------gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~ 196 (311)
T d1nr0a1 139 NGNL----TGQ-ARAMNSVDFKPSRPFRIIS-----------------GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196 (311)
T ss_dssp CBCC----CCC-SSCEEEEEECSSSSCEEEE-----------------EETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred cccc----ccc-ccccccccccccceeeecc-----------------cccccccccccccccccccccccccccccccc
Confidence 2111 111 12467788888886 3443 22356788888887776555443 33457899
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCc-CcceeeeccCCC---CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENLP---GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~g~~-~~~~~~~~~~~~---g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
++|+++.++.+.. .+.|..++..... ....+....... +....++++++|++.++...
T Consensus 197 ~~p~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~----------------- 258 (311)
T d1nr0a1 197 YNPDGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----------------- 258 (311)
T ss_dssp ECTTSSEEEEEET-TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-----------------
T ss_pred cCccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC-----------------
Confidence 9999996665554 4668888865321 111111110111 12345788999986665433
Q ss_pred HHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeCC
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.|..+| .+++.+..+...... .....++...++.|+.++. ...|..+++|
T Consensus 259 -----------------Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~-dG~i~~wd~d 311 (311)
T d1nr0a1 259 -----------------DKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISA-NGFINFVNPE 311 (311)
T ss_dssp -----------------TSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEET-TCCEEEEETT
T ss_pred -----------------CCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEEC-CCEEEEEeCC
Confidence 24676777 468888888654432 2344566666778888885 6778877765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.12 E-value=0.0002 Score=65.82 Aligned_cols=154 Identities=11% Similarity=0.010 Sum_probs=93.7
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEE----ecCCCEEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVAL----SRDEDYVV 222 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~----~~dg~~l~ 222 (360)
.|.++++++||+ +|+++ ..|.+..+|..+++.+.. ......+.++++ ++||+++|
T Consensus 63 ~~~~v~fSpDG~~l~~~s------------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIG------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp CEEEEEECTTSCEEEEEE------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred CeeEEEECCCCCEEEEEc------------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence 478999999995 66643 246788899876654322 223345667765 56999999
Q ss_pred EEeCCCCEEEEEEecCCcCcceeeecc------C----CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 018144 223 VCESWKFRCRKYWLKGERKGKLETFAE------N----LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~~~~------~----~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~ 292 (360)
++....+.|..++.+..+.. ..+.. . ..+.+..+..+++|..|+.....
T Consensus 125 vs~~~~~~v~i~d~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~------------------- 183 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETLEPK--KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------------- 183 (432)
T ss_dssp EEEEETTEEEEEETTTCCEE--EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-------------------
T ss_pred EEcCCCCeEEEEeCccccce--eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-------------------
Confidence 99888889999987643211 11110 0 11123346678888765544331
Q ss_pred hCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 293 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..++. +++......-+.|. .+..+... +.++|+++..++.+..+++
T Consensus 184 --------------~~~i~~~d~~~~~~~~~~~i~~g~---~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 184 --------------TGKILLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp --------------TTEEEEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred --------------CCeEEEEEccCCCcceEEEEcccC---ccccceECCCCCEEEEeccccceEEEeec
Confidence 246777764 44443332222332 34455554 3568999999999888775
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.12 E-value=0.00025 Score=60.54 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=93.4
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE-CCe-e--------------eEEE-ecCCeEEEEeCCCcEEEEcCCCeEEEeecc
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ-DGT-W--------------VNWK-FIDSHLIICDNANGLHKVSEDGVENFLSYV 143 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~-~--------------~~~~-~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~ 143 (360)
-.++++.++|.++++..++.+..++ .+. . ..+. ..+|++.++...+.+..++..........
T Consensus 58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~- 136 (299)
T d1nr0a2 58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS- 136 (299)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS-
T ss_pred EEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 3578888999999888888888877 221 0 0111 12444444444444444442221111111
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYV 221 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l 221 (360)
.....+++.+++.+.++ +...|.|..+|.++++..... ..-...+.++++++++.+
T Consensus 137 -----~~~~~~~~s~~~~~l~~-----------------g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 137 -----YNSSCVALSNDKQFVAV-----------------GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp -----SCEEEEEECTTSCEEEE-----------------EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred -----ccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 12456778888876554 233577888887766654322 123346789999999877
Q ss_pred EEEeCCCCEEEEEEecCCc-CcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 222 VVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~-~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
+.+.. .+.|..++..... ......+. ........++++++|.+.++..
T Consensus 195 ~~~~~-d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs 243 (299)
T d1nr0a2 195 VATDQ-SRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGS 243 (299)
T ss_dssp EEEET-TSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccc-cccccccccccccccccccccc-ccccccccccccccccceEEEc
Confidence 66654 5678888875321 11111111 1112245577889997665443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.09 E-value=0.0011 Score=57.63 Aligned_cols=171 Identities=9% Similarity=-0.033 Sum_probs=93.0
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCee-----------eEEEe-cCCeEE-EEeCCCcEEEEc-CCC--e-EEEe
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-----------VNWKF-IDSHLI-ICDNANGLHKVS-EDG--V-ENFL 140 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~-----------~~~~~-~~g~L~-v~~~~~gl~~~~-~~g--~-~~l~ 140 (360)
.|..++.+++|...+...++.|+.++ +++. ..+.. ++|++. .++.++-+..++ .++ . ....
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~ 98 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 98 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc
Confidence 45567888888766555566777777 3322 11222 345544 455455555556 433 2 2211
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~ 219 (360)
.... ..+.++++.++|...++-+. + ....+..++.++++...... .....+.++++++++
T Consensus 99 ~~~~----~~v~~v~~s~d~~~l~~~~~--------------~-~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~ 159 (311)
T d1nr0a1 99 PVFS----GPVKDISWDSESKRIAAVGE--------------G-RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159 (311)
T ss_dssp ECSS----SCEEEEEECTTSCEEEEEEC--------------C-SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred cccc----Cccccccccccccccccccc--------------c-ccccccccccccccccccccccccccccccccccce
Confidence 1111 24678899999987765322 0 01123334444444332222 233467899999998
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.++++.+..+.|..|+.+..+ ....+. ........+.++++|++.++...
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFK--FKSTFG-EHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred eeecccccccccccccccccc--cccccc-cccccccccccCccccccccccc
Confidence 777766666778888875321 111221 22223457888999987665443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.09 E-value=0.00021 Score=61.89 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=75.1
Q ss_pred EEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcC
Q 018144 119 LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 194 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 194 (360)
|++++..+.|..+| +++ +..+. .+. ...|.++++++||+ +|+++. ..+.|..+|.
T Consensus 11 l~~~~~~~~v~v~D~~t~~~~~t~~--~~~--~~~p~~l~~spDG~~l~v~~~-----------------~~~~v~~~d~ 69 (346)
T d1jmxb_ 11 MIVTNYPNNLHVVDVASDTVYKSCV--MPD--KFGPGTAMMAPDNRTAYVLNN-----------------HYGDIYGIDL 69 (346)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEE--CSS--CCSSCEEEECTTSSEEEEEET-----------------TTTEEEEEET
T ss_pred EEEEcCCCEEEEEECCCCCEEEEEE--cCC--CCCcceEEECCCCCEEEEEEC-----------------CCCcEEEEeC
Confidence 34445455566666 555 22221 111 13578999999995 788753 2578999999
Q ss_pred CCCeEEEEeCC-------CcCcceEEEecCCCEEEEEeCC-----------CCEEEEEEecCCc-CcceeeeccCCCCCC
Q 018144 195 SSNITTLVADG-------FYFANGVALSRDEDYVVVCESW-----------KFRCRKYWLKGER-KGKLETFAENLPGAP 255 (360)
Q Consensus 195 ~tg~~~~~~~~-------l~~pngia~~~dg~~l~v~~t~-----------~~~i~~~~~~g~~-~~~~~~~~~~~~g~p 255 (360)
.+++....... ...|.++++++||+.+|++... ...+..++....+ ........ .+...
T Consensus 70 ~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~ 147 (346)
T d1jmxb_ 70 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQV 147 (346)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSC
T ss_pred ccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee--ccCce
Confidence 98876543221 2358899999999999998642 3345556553221 11111111 12223
Q ss_pred ceeEEcCCCCEEEEE
Q 018144 256 DNINLAPDGTFWIAI 270 (360)
Q Consensus 256 d~i~~d~~G~lwva~ 270 (360)
..+....+|.+++..
T Consensus 148 ~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 148 YLMRAADDGSLYVAG 162 (346)
T ss_dssp CCEEECTTSCEEEES
T ss_pred EEEEecCCCEEEEeC
Confidence 345556677777764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.05 E-value=0.00013 Score=62.96 Aligned_cols=128 Identities=21% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcC
Q 018144 119 LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 194 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 194 (360)
++.+...+.|..+| +++ ...+.....+ ..|.++++++||+ +|++.. ..+.|..||.
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~---~~~~~i~~spDg~~l~v~~~-----------------~~~~v~v~D~ 63 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAG---PTPMVPMVAPGGRIAYATVN-----------------KSESLVKIDL 63 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCT---TCCCCEEECTTSSEEEEEET-----------------TTTEEEEEET
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCC---CCccEEEECCCCCEEEEEEC-----------------CCCeEEEEEC
Confidence 45556567788888 666 3334222222 3588999999996 678643 3578999999
Q ss_pred CCCeEEEEeCC------CcCcceEEEecCCCEEEEEeCC-----------CCEEEEEEecCCcCcceeeeccCCCCCCce
Q 018144 195 SSNITTLVADG------FYFANGVALSRDEDYVVVCESW-----------KFRCRKYWLKGERKGKLETFAENLPGAPDN 257 (360)
Q Consensus 195 ~tg~~~~~~~~------l~~pngia~~~dg~~l~v~~t~-----------~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~ 257 (360)
.+++....... ...+.++++++|++.+|++... ...+..++..... ....+ .....|.+
T Consensus 64 ~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~--~~~~~~~~ 139 (337)
T d1pbyb_ 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAF--EAPRQITM 139 (337)
T ss_dssp TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEE--ECCSSCCC
T ss_pred CCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe--EEEec--cccCCceE
Confidence 98877543221 2457899999999999988642 2345555543211 11111 12345889
Q ss_pred eEEcCCCC-EEEEE
Q 018144 258 INLAPDGT-FWIAI 270 (360)
Q Consensus 258 i~~d~~G~-lwva~ 270 (360)
++++++|. +|++.
T Consensus 140 ~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 140 LAWARDGSKLYGLG 153 (337)
T ss_dssp EEECTTSSCEEEES
T ss_pred EEEcCCCCEEEEEc
Confidence 99999996 55543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.96 E-value=6.7e-05 Score=69.61 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=68.3
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCc------ceEEEecC-
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFA------NGVALSRD- 217 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~p------ngia~~~d- 217 (360)
+..|.+|++.+||+||||.. ..|+|+++++++++.+.+..- .... -||+++||
T Consensus 26 L~~P~~la~~pdg~llVter-----------------~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf 88 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTER-----------------ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF 88 (450)
T ss_dssp CSSEEEEEECTTSCEEEEET-----------------TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred CCCceEEEEeCCCeEEEEEe-----------------cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence 35788999999999999742 258899999888877654321 1112 36999985
Q ss_pred --CCEEEEEeCC------------CCEEEEEEecCCcC--cceeeeccCCCC----CCceeEEcCCCCEEEEEecC
Q 018144 218 --EDYVVVCESW------------KFRCRKYWLKGERK--GKLETFAENLPG----APDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 218 --g~~l~v~~t~------------~~~i~~~~~~g~~~--~~~~~~~~~~~g----~pd~i~~d~~G~lwva~~~~ 273 (360)
...+|++.+. ...+.++..+.... ...+.+....+. .-..|.+++||.||++....
T Consensus 89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~ 164 (450)
T d1crua_ 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (450)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence 4578987541 11355555543321 122222222221 13468999999999998753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.96 E-value=2.7e-05 Score=67.84 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=70.2
Q ss_pred EEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCEEEEEeCCCCEE
Q 018144 154 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRC 231 (360)
Q Consensus 154 l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l~v~~t~~~~i 231 (360)
++++++|+.+++- ...+.|..+|.+++++.... .....|.+++++|||+.+|++....+.|
T Consensus 2 ~a~~~~~~~l~~~-----------------~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v 64 (346)
T d1jmxb_ 2 PALKAGHEYMIVT-----------------NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64 (346)
T ss_dssp CCCCTTCEEEEEE-----------------ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCCCcEEEEE-----------------cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence 4677888777753 23578999999999875432 3345799999999999999999888999
Q ss_pred EEEEecCCcCcceeeeccC---CCCCCceeEEcCCCC-EEEEEe
Q 018144 232 RKYWLKGERKGKLETFAEN---LPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 232 ~~~~~~g~~~~~~~~~~~~---~~g~pd~i~~d~~G~-lwva~~ 271 (360)
..+|++..+.......... ....|.++++++||+ +|++..
T Consensus 65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 9999864322111000000 112478999999995 777753
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.95 E-value=0.00014 Score=64.85 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=106.3
Q ss_pred cccccEEEcCCCcEEEEeCCCCCC-CccceecccccCCccEEEEEcCCCCeEE--EE--eCC-----CcCcceEEE--ec
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYL-PHEYCLDILEGKPHGQLLKYDPSSNITT--LV--ADG-----FYFANGVAL--SR 216 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~-~~~~~~~~~~~~~~g~l~~~d~~tg~~~--~~--~~~-----l~~pngia~--~~ 216 (360)
..+.||+++++|.+|++..- .+. ...+ .....|.++.+|.++.+.+ .+ ..+ ...|.|+.+ +.
T Consensus 35 ~G~EDi~~~~dg~~~issg~-~~~~~~~~-----~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~ 108 (340)
T d1v04a_ 35 NGSEDLEILPNGLAFISSGL-KYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 108 (340)
T ss_dssp SCCCEEEECTTSEEEEEECC-CC-------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT
T ss_pred CCcceEEECCCCcEEEEecC-ccCCCCCC-----CCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC
Confidence 35889999999998887432 111 1111 1123589999997644322 21 111 146899987 44
Q ss_pred CCC-EEEEEeC--CCCEEEEEEec--CCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 217 DED-YVVVCES--WKFRCRKYWLK--GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 217 dg~-~l~v~~t--~~~~i~~~~~~--g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
||. .|+|.+. .+.+|-.|+++ +.+......+.......|++++...+|.+|++..... ..++.+.+-
T Consensus 109 dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~--------~~~~~~~~e 180 (340)
T d1v04a_ 109 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYF--------IDPYLKSWE 180 (340)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSC--------CSHHHHHHH
T ss_pred CCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccC--------cChhhhhhh
Confidence 554 5777775 34566656554 3233333344333445799999999999999965421 112222211
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
. + ...+.+.|+.++++.. +...+ + +..+.++... ++.||++.....+|.++.++
T Consensus 181 ~-~--------~~~~~g~v~~~~~~~~--~~~~~--~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 181 M-H--------LGLAWSFVTYYSPNDV--RVVAE--G--FDFANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp H-H--------TTCCCEEEEEECSSCE--EEEEE--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred H-h--------hcCCceeEEEEcCCce--EEEcC--C--CCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence 0 0 0223578888886442 22221 2 3456667765 36899999999999998763
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.94 E-value=0.0026 Score=57.57 Aligned_cols=163 Identities=6% Similarity=-0.057 Sum_probs=90.5
Q ss_pred CEEEEe-cCCeEEEEE--CCee----------eEEEe--cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCc-cccccc
Q 018144 91 VIYTAT-RDGWIKRLQ--DGTW----------VNWKF--IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGS-KLRFAN 152 (360)
Q Consensus 91 ~l~v~~-~~G~I~~~~--~g~~----------~~~~~--~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~-~~~~~n 152 (360)
.++++. .+|.|..+| +++. ..+.+ .+.+||+++.++.+..++ .++ .........+. ....+.
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 344544 567777777 4432 22222 244588888766677787 555 33322211111 111222
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC------------CcCcceEEEecCCC
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRDED 219 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~------------l~~pngia~~~dg~ 219 (360)
.+++.+||+ ++++.. ..+.+..+|..+++....... ......++.++|+.
T Consensus 113 s~~~spDG~~l~v~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~ 175 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 175 (426)
T ss_dssp CCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred eeeecCCCCEEEEeec-----------------CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence 333446885 677532 234677778777765443221 11234577888998
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.++++....+.+..++............. ....|.++.++++|+++.....
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 176 EFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp EEEEEETTTTEEEEEECSSSSSCEEEEEE--CCSSEEEEEECTTSCEEEEEET
T ss_pred EEEEecCCCCeEEEEEeccccceeeEEec--cCCccEeeeECCCCcEEEeeee
Confidence 88888888888877765432222222221 2235788999999986665443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.0071 Score=52.32 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=95.3
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CC-e---------------eeEEEe-cCCe-EEEEeCCCcEEEEc-CCC-e
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG-T---------------WVNWKF-IDSH-LIICDNANGLHKVS-EDG-V 136 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g-~---------------~~~~~~-~~g~-L~v~~~~~gl~~~~-~~g-~ 136 (360)
..-.++++.++|...++..+|.|..++ ++ . +..+.. ++|+ |.++..++.+..++ ... .
T Consensus 52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 131 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc
Confidence 355788999988765555678877777 22 1 111222 2444 55555545455566 322 2
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEe
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALS 215 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~ 215 (360)
+.... ..+. ...+..+++.+++.+.++-+ ..+.+..++..+++....... ....+.++++
T Consensus 132 ~~~~~-~~~~-~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s 192 (337)
T d1gxra_ 132 RIKAE-LTSS-APACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EEEEE-EECS-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ccccc-cccc-cccccccccccccccccccc-----------------cccccccccccccccccccccccccccccccc
Confidence 22111 1111 12355677888887776522 245688888877776554433 3346788999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
++++.++++.. .+.+..+++...+ ....+ ...+....++++++|++.++
T Consensus 193 ~~~~~~~~~~~-d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~ 241 (337)
T d1gxra_ 193 NDGTKLWTGGL-DNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp TTSSEEEEEET-TSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccc-cccccccccccce--eeccc--ccccceEEEEEcccccccce
Confidence 99987776654 5678888875322 11222 12233556778888875554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.79 E-value=0.0008 Score=59.26 Aligned_cols=108 Identities=10% Similarity=-0.042 Sum_probs=68.7
Q ss_pred ccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++.+++.+|| ++|+++... ....+.|+.+|.++++........ .+.+++++|||+.+|++....
T Consensus 22 p~~~~a~spdg~~~~~~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAH-------------HSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred CccccccCCCCCEEEEEcccc-------------cCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecC
Confidence 35778899999 689986541 123467999999988876544332 344799999999999987543
Q ss_pred ---------CEEEEEEecCCcCcceeeeccC-----CCCCCceeEEcCCCC-EEEEEec
Q 018144 229 ---------FRCRKYWLKGERKGKLETFAEN-----LPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 229 ---------~~i~~~~~~g~~~~~~~~~~~~-----~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+.|..+|....+... ++.... ....|.++.+.++|. +++....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 145 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA 145 (373)
T ss_pred CcccccccceEEEEEECCCCcEEE-EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence 456777765432111 110000 112467788888874 6776654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.69 E-value=7e-05 Score=68.89 Aligned_cols=174 Identities=11% Similarity=0.062 Sum_probs=98.1
Q ss_pred cCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCEEEEEeCCCCEE--
Q 018144 157 ASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRC-- 231 (360)
Q Consensus 157 d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l~v~~t~~~~i-- 231 (360)
.+|| .+|++|.. +++|.++|.++++..... .....|+|+++++||+++||+....+.+
T Consensus 80 tpDGr~lfV~d~~-----------------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 80 RYDGKYLFINDKA-----------------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp EEEEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred cCCCCEEEEEcCC-----------------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence 3678 59998754 579999999999876643 3467899999999999999987655444
Q ss_pred ----------------EEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchh-HHH--------Hhhcch
Q 018144 232 ----------------RKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDAR-RMK--------ILNSSK 285 (360)
Q Consensus 232 ----------------~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~-~~~--------~~~~~~ 285 (360)
..++....+. ..++ ..++.|+++.++++|. +|+++.....- ..+ ++.-..
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v-~~qI---~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n 218 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDV-AWQV---IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN 218 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSE-EEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE
T ss_pred cCcccccccccccceEEeecCcccee-eEEE---ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC
Confidence 2233321110 0111 1235699999999996 88877653111 111 111110
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECC--CCcEEEEEeCCCCCcccceeeEEE--ECCEEEEEeCCCCeEEEEeCC
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~~~~~g~~~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l~ 360 (360)
+ .....-.|. ....... ...+..++. ..+++..+.. |. .+.++.. ++.++|+++..++.+.+++++
T Consensus 219 ~-p~~~~~~~d--Gk~~~v~-~~~v~vvd~~~~~~v~~~IPv--gk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 219 V-ERIAAAVKA--GNFKTIG-DSKVPVVDGRGESEFTRYIPV--PK---NPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp H-HHHHHHHHT--TCCBCCT-TCCCCEEECSSSCSSEEEECC--BS---SCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred c-cceEEEecC--CCEEEeC-CCCcEEEEcccCCceEEEEeC--CC---CccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 0 011110010 0000011 123444442 3455555543 32 2333444 457899999999999999863
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.64 E-value=0.0022 Score=55.54 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=77.4
Q ss_pred CCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+|++++......++.++ .+| ...+. .+ ..+.++++.+||+ |+++-. .....|+.+
T Consensus 14 dG~~~a~~~~g~v~v~d~~~~~~~~~~---~~---~~v~~~~~spDg~~l~~~~~----------------~~g~~v~v~ 71 (360)
T d1k32a3 14 DGDLIAFVSRGQAFIQDVSGTYVLKVP---EP---LRIRYVRRGGDTKVAFIHGT----------------REGDFLGIY 71 (360)
T ss_dssp GGGCEEEEETTEEEEECTTSSBEEECS---CC---SCEEEEEECSSSEEEEEEEE----------------TTEEEEEEE
T ss_pred CCCEEEEEECCeEEEEECCCCcEEEcc---CC---CCEEEEEECCCCCEEEEEEc----------------CCCCEEEEE
Confidence 44444433344566666 444 33321 11 2467889999996 444311 112357889
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
|.++++.+.+.......+.++++|||+.+..+.. .+.++.++.++.+. ...+. ........+++.++|...+
T Consensus 72 d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKP--TVIER-SREAMITDFTISDNSRFIA 143 (360)
T ss_dssp ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCE--EEEEE-CSSSCCCCEEECTTSCEEE
T ss_pred ECCCCcEEEeeCCCceEEeeeecccccccceecc-ccccccccccccce--eeeee-cccccccchhhccceeeee
Confidence 9988888877666667789999999996666654 56788888765322 12221 2333456788888887544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.57 E-value=0.00062 Score=59.40 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=64.6
Q ss_pred EcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC-------
Q 018144 156 EASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW------- 227 (360)
Q Consensus 156 ~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~------- 227 (360)
..+|| ++|+++... +...+.|+.+|.++++..........| +++++|||+.+|+++..
T Consensus 9 ~spdg~~~~v~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g 74 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAH-------------FAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARG 74 (355)
T ss_dssp CCCCTTEEEEEECGG-------------GCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEE
T ss_pred eCCCCCEEEEEeccc-------------CCCcCeEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCcccccc
Confidence 45788 689987541 223467999999999875544333333 79999999999998642
Q ss_pred --CCEEEEEEecCCcCcceeeecc----CCCCCCceeEEcCCCC-EEEEEec
Q 018144 228 --KFRCRKYWLKGERKGKLETFAE----NLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 228 --~~~i~~~~~~g~~~~~~~~~~~----~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
.+.|..||....+....-.... .....|.+++++++|+ ++++...
T Consensus 75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126 (355)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence 2457778775432211101110 1123578899999986 6776544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.56 E-value=0.0037 Score=57.06 Aligned_cols=109 Identities=8% Similarity=-0.058 Sum_probs=63.9
Q ss_pred CeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCC-CccceecccccCCccEEEE
Q 018144 117 SHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL-PHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~-~~~~~~~~~~~~~~g~l~~ 191 (360)
..|||++.. +.+-+++ .++ .........+ ..|.++++.++| ++|++..+.... ...-...+........+..
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~ 160 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence 358888865 4677777 666 3332221112 358899999988 478876432100 0000000001112234667
Q ss_pred EcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 192 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
+|+.+.++......-..|.++++++||+++|++....
T Consensus 161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence 8988777654333345789999999999999997654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.56 E-value=0.0047 Score=54.38 Aligned_cols=190 Identities=10% Similarity=-0.050 Sum_probs=104.6
Q ss_pred CCcceEEEcCCC-CEEEEe-cCCeEEEEE--CCeeeEEEec---------CCeEEEEeC-CCcEEEEc-C-CC-eEEEee
Q 018144 79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI---------DSHLIICDN-ANGLHKVS-E-DG-VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~-~~G~I~~~~--~g~~~~~~~~---------~g~L~v~~~-~~gl~~~~-~-~g-~~~l~~ 141 (360)
..|.++++.+|| .||+++ ..|.+..++ +++....... +.+.+++.. +..+..++ . .+ ......
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence 468899999988 588887 578899998 5554332211 122333322 23344444 2 22 111111
Q ss_pred -ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----------C--Cc
Q 018144 142 -YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------G--FY 207 (360)
Q Consensus 142 -~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----------~--l~ 207 (360)
.........+.....+.+|.++++. .++++.++...++...... . ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T d1mdah_ 204 AQCTGAQNCSSQAAQANYPGMLVWAV-------------------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECB-------------------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred cccccccccceeecccccCcEEEEec-------------------CCCEEEEeecCCceEEEeecccccceeeeeeecCC
Confidence 1001111234556666777655532 2234444444333332211 0 11
Q ss_pred CcceEEEecCCCEEEEEeCCC--------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC--EEEEEecCchhH
Q 018144 208 FANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARR 277 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~~~~~ 277 (360)
.+..++++++++.+|+..... .+|+.+|.+..+. ...+ .....|..+++++||+ +|++...
T Consensus 265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~--~~~~~~~~~a~spDG~~~ly~s~~~----- 335 (368)
T d1mdah_ 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPI--SNGHDSDAIIAAQDGASDNYANSAG----- 335 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECC--EEEEEECEEEECCSSSCEEEEEETT-----
T ss_pred CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE--eEEe--cCCCceeEEEECCCCCEEEEEEeCC-----
Confidence 345789999999999875332 3577888754321 1111 1123578899999996 6776654
Q ss_pred HHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC
Q 018144 278 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD 325 (360)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~ 325 (360)
.+.|..+|. .|+.+..+..
T Consensus 336 -----------------------------~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 336 -----------------------------TEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp -----------------------------TTEEEEEESSSCEEEEECCC
T ss_pred -----------------------------CCeEEEEECCCCCEEEEEEC
Confidence 257888995 6888887764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=0.029 Score=48.69 Aligned_cols=217 Identities=12% Similarity=0.092 Sum_probs=109.6
Q ss_pred ceEEEcCCCCEE-EEecCCeEEEEE--CCeeeEE-----------Ee--cCCeEEEEeCCCcEEEEc-CCC-eEEEeecc
Q 018144 82 EDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNW-----------KF--IDSHLIICDNANGLHKVS-EDG-VENFLSYV 143 (360)
Q Consensus 82 e~i~~d~~G~l~-v~~~~G~I~~~~--~g~~~~~-----------~~--~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~ 143 (360)
.++++.++|.+. +++.+|.|..++ .++.... .. .+..+..++....+..++ .+. .......
T Consensus 125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~- 203 (388)
T d1erja_ 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI- 203 (388)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred EEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc-
Confidence 467888887654 556888888877 4432211 11 122345555444454555 333 2211111
Q ss_pred CCccccccccEEEc-CCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--------CcCcceEEE
Q 018144 144 NGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------FYFANGVAL 214 (360)
Q Consensus 144 ~~~~~~~~n~l~~d-~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--------l~~pngia~ 214 (360)
.. ....+.+. .+|++.++ +...+.|..+|..++........ ......+++
T Consensus 204 ~~----~~~~~~~~~~~~~~l~~-----------------~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 262 (388)
T d1erja_ 204 ED----GVTTVAVSPGDGKYIAA-----------------GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262 (388)
T ss_dssp SS----CEEEEEECSTTCCEEEE-----------------EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred cc----ccccccccCCCCCeEEE-----------------EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence 11 11222333 35555553 22245677777665544322111 123467899
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCc---------ceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKG---------KLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 285 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~---------~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~ 285 (360)
+++++.++.+.. .+.|..+++...... ...............++++++|.+.++...
T Consensus 263 s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------------- 328 (388)
T d1erja_ 263 TRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------------- 328 (388)
T ss_dssp CTTSSEEEEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------
T ss_pred CCCCCEEEEEEC-CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-------------
Confidence 999986665554 567888886532110 000000111223456778888875554333
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-------CCEEEEEeCCCCeEEEE
Q 018144 286 LIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKV 357 (360)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-------~g~Lylgs~~~~~i~~~ 357 (360)
.+.|..+| .+|+.+..+....+ .++++... ++.+.+.+-....|.+.
T Consensus 329 ---------------------dg~i~vwd~~~~~~~~~l~~H~~----~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 329 ---------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 383 (388)
T ss_dssp ---------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred ---------------------CCEEEEEECCCCcEEEEEeCCCC----CEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence 25677777 46888888765443 34444432 45555554455667666
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
++
T Consensus 384 ~~ 385 (388)
T d1erja_ 384 KY 385 (388)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.033 Score=48.72 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=73.0
Q ss_pred ceEEEcCCCCEEE-EecCCeEEEEE--CCeeeE-------------EEe-cCCe-EEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 82 EDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVN-------------WKF-IDSH-LIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 82 e~i~~d~~G~l~v-~~~~G~I~~~~--~g~~~~-------------~~~-~~g~-L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
.+++++++|.+.+ ++.+|.|..++ +++.+. +.. ++++ |..++.++-+...+ .++ .+....
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 90 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 90 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence 5788888887664 55778777776 443221 111 2333 44444444455555 444 322211
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeCC-CcCcceEEEecCC
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADG-FYFANGVALSRDE 218 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~~-l~~pngia~~~dg 218 (360)
. .+. ...+..+.++++|+..++-+. ...-+++.++........ .... -.....++++||+
T Consensus 91 ~-~~~-~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 91 I-LRI-NRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp C-CCC-SSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred c-ccc-cccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccccc
Confidence 1 111 134678889999976554221 112245556554332221 1122 1234678999999
Q ss_pred CEEEEEeCCCCEEEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~ 237 (360)
+.+..+. ..+.|..++..
T Consensus 154 ~~l~s~s-~D~~v~v~~~~ 171 (371)
T d1k8kc_ 154 VLLAAGS-CDFKCRIFSAY 171 (371)
T ss_dssp SEEEEEE-TTSCEEEEECC
T ss_pred cceeccc-cCcEEEEEeec
Confidence 8665444 45667777764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=0.0099 Score=53.49 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=60.8
Q ss_pred EEEEeCCC-cEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 119 LIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 119 L~v~~~~~-gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
++|+.... .+..+| .++ +..+.. + ..|.++++++||+ +|+++ ..+.|..+|
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~---g---~~~~~vafSPDGk~l~~~~------------------~d~~v~vwd 89 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDT---G---YAVHISRMSASGRYLLVIG------------------RDARIDMID 89 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEEC---C---SSEEEEEECTTSCEEEEEE------------------TTSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC---C---CCeeEEEECCCCCEEEEEe------------------CCCCEEEEE
Confidence 44555443 344556 555 344421 1 2478999999996 56642 246788899
Q ss_pred CCCCeEEEEe--CCCcCcceEEE----ecCCCEEEEEeCCCCEEEEEEecC
Q 018144 194 PSSNITTLVA--DGFYFANGVAL----SRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 194 ~~tg~~~~~~--~~l~~pngia~----~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.++++..... .....+.++++ +|||+.++++....+.+..++.+.
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~ 140 (426)
T d1hzua2 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140 (426)
T ss_dssp TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence 8877654322 22345566655 469999999987777787777654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.045 Score=47.42 Aligned_cols=168 Identities=14% Similarity=0.073 Sum_probs=83.6
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCeeeE-----------------------------EEe-cCCe-EEEEeCCCc
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-----------------------------WKF-IDSH-LIICDNANG 127 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~-----------------------------~~~-~~g~-L~v~~~~~g 127 (360)
-.+++++++|.+.++..+|.|..++ +++... +.. ++|+ |..+..++-
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~ 144 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence 4578899999876555678887777 443211 111 1333 334443333
Q ss_pred EEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC
Q 018144 128 LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 205 (360)
Q Consensus 128 l~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~ 205 (360)
+..++ ..+ ......... ..+..+...+++...++ +...+.+..+|..+.........
T Consensus 145 v~i~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~-----------------~~~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 145 IRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVS-----------------GSGDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp EEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccccc----ccccccccccccccccc-----------------cccceeeeeeecccccccccccc
Confidence 44444 344 211111111 23556677777765543 22346788888876665544333
Q ss_pred CcCcceEEEec-CCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccC---CCCCCceeEEcCCCCEEEEE
Q 018144 206 FYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERK-GKLETFAEN---LPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 206 l~~pngia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~---~~g~pd~i~~d~~G~lwva~ 270 (360)
......+++.+ +++.++.+. ..+.|..++...... ......... ..+....+.+.++|++.++.
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 204 EDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp SSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccCCCCCeEEEEc-CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence 33444555554 666554444 456688887653211 111110001 11223456778888755543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.051 Score=46.48 Aligned_cols=104 Identities=12% Similarity=-0.030 Sum_probs=56.3
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++++++.++|+..++-+. ...+.+..++.++++......+ ....+.+++++++..++++....
T Consensus 117 ~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 181 (325)
T d1pgua1 117 PISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181 (325)
T ss_dssp CEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeecccccccccccccccceEEEeecc
Confidence 3578888999975553221 0122345555555654433332 33457899999987666655556
Q ss_pred CEEEEEEecCCcCcceeeecc--CCCCCCceeEEcCCC-CEEEEE
Q 018144 229 FRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDG-TFWIAI 270 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~--~~~g~pd~i~~d~~G-~lwva~ 270 (360)
+.+..++....+. ...... ...+....+++.+++ .+.++.
T Consensus 182 ~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~ 224 (325)
T d1pgua1 182 GSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITV 224 (325)
T ss_dssp TEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ccccccccccccc--ceecccccCCCCccEEeeeccccceecccc
Confidence 6777777643211 111111 122234567788764 555443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.19 E-value=0.015 Score=49.96 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=55.1
Q ss_pred CC-eEEEEeCCCc--EEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEE
Q 018144 116 DS-HLIICDNANG--LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 116 ~g-~L~v~~~~~g--l~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
+| .|+++....| ++.++ .+| .+.+... ...+..+++++||+..++- ...+.++
T Consensus 53 Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~-----------------~~~~~~~ 110 (360)
T d1k32a3 53 DTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-----LGNVFAMGVDRNGKFAVVA-----------------NDRFEIM 110 (360)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCC-----CCSEEEEEECTTSSEEEEE-----------------ETTSEEE
T ss_pred CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC-----CceEEeeeeccccccccee-----------------ccccccc
Confidence 44 4555554443 45556 556 5443211 1246788999999755542 2346788
Q ss_pred EEcCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEe
Q 018144 191 KYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 191 ~~d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~ 225 (360)
.++.++++...... .......+++++||+.+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred cccccccceeeeeecccccccchhhccceeeeeeec
Confidence 88888777655443 344567899999999776653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.18 E-value=0.0031 Score=55.68 Aligned_cols=107 Identities=6% Similarity=-0.143 Sum_probs=65.9
Q ss_pred ccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC---
Q 018144 152 NDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--- 227 (360)
Q Consensus 152 n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--- 227 (360)
..++..++| ..|++-... ......|+.+|.+++++......- +..++++++||+.+|+++..
T Consensus 23 ~~~a~~~~~~~~~v~~~~~-------------~~g~~~~~~~d~~~~~~~~~~~~~-~~~~~a~spDg~~i~~~~~~~~~ 88 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAY-------------FAGTTENWVSCAGCGVTLGHSLGA-FLSLAVAGHSGSDFALASTSFAR 88 (368)
T ss_dssp BCCCCCCCTTEEEEEECTT-------------TCSSEEEEEEETTTTEEEEEEEEC-TTCEEEECTTSSCEEEEEEEETT
T ss_pred cccccCCCCcceeEEeecc-------------CCCcceEEEEeCCCCcEEEEEeCC-CCCcceECCCCCEEEEEcccCcc
Confidence 344556677 466654321 123457999999999876544433 34589999999999998742
Q ss_pred ------CCEEEEEEecCCcCcceeeeccC----CCCCCceeEEcCCCC-EEEEEec
Q 018144 228 ------KFRCRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 228 ------~~~i~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
.+.|..||....+....-..... ....|.++++.+||+ +|++...
T Consensus 89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~ 144 (368)
T d1mdah_ 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG 144 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC
Confidence 23477888654321111011110 112588999999994 8888765
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.12 E-value=0.057 Score=45.37 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=78.7
Q ss_pred cCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEE
Q 018144 183 GKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINL 260 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~ 260 (360)
+...+.+..+|..+++......+ ....+.++++|+++.++.+.. .+.|..++..... ....+.. ........+.+
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRADQ--ELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTE--EEEEECCTTCCSCEEEEEE
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeecccc--cccccccccccCceEEEEE
Confidence 34457788888877776544333 345678999999986665554 5668878765321 1222211 11122456778
Q ss_pred cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEE
Q 018144 261 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ 339 (360)
Q Consensus 261 d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~ 339 (360)
+++|++.++... .+.|..+|. +++.+..+....+ .++++..
T Consensus 279 s~~~~~l~~g~~----------------------------------dg~i~iwd~~~~~~~~~~~~H~~----~V~~l~~ 320 (340)
T d1tbga_ 279 SKSGRLLLAGYD----------------------------------DFNCNVWDALKADRAGVLAGHDN----RVSCLGV 320 (340)
T ss_dssp CSSSCEEEEEET----------------------------------TSCEEEEETTTCCEEEEECCCSS----CEEEEEE
T ss_pred CCCCCEEEEEEC----------------------------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEE
Confidence 999986665443 256777774 6788877754332 4777777
Q ss_pred E-CC-EEEEEeCCCCeEEE
Q 018144 340 V-DN-HLYVISLTSNFIGK 356 (360)
Q Consensus 340 ~-~g-~Lylgs~~~~~i~~ 356 (360)
. ++ .|..|+.. ..|.+
T Consensus 321 s~d~~~l~s~s~D-g~v~i 338 (340)
T d1tbga_ 321 TDDGMAVATGSWD-SFLKI 338 (340)
T ss_dssp CTTSSCEEEEETT-SCEEE
T ss_pred eCCCCEEEEEccC-CEEEE
Confidence 5 34 45555543 34443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.82 E-value=0.056 Score=46.20 Aligned_cols=103 Identities=13% Similarity=0.034 Sum_probs=62.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC-EEEEEeCCC
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED-YVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~-~l~v~~t~~ 228 (360)
...++++++|. +|++...... .........|..+|..+++.......-..+.+++++|||+ .+|++....
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d 322 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDE--------WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 322 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCT--------TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred eEEEEEeCCCCeEEEEeccCCc--------eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC
Confidence 45678888885 5554322100 0011223578899998887654433345688999999997 477787777
Q ss_pred CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 229 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
+.|..||.+..+ ....+. .....|.-+.+..+|
T Consensus 323 ~~i~v~D~~tg~--~~~~i~-~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 323 KTLYIHDAESGE--ELRSVN-QLGHGPQVITTADMG 355 (355)
T ss_dssp TEEEEEETTTCC--EEEEEC-CCCSSCCEEECCCCC
T ss_pred CEEEEEECCCCC--EEEEEe-CcCCCccEEEeCCCC
Confidence 899999985432 122222 223357767665554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.79 E-value=0.14 Score=44.66 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec----cCCCCCCceeEE--cCCC-CEEEEEec
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA----ENLPGAPDNINL--APDG-TFWIAIIK 272 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~----~~~~g~pd~i~~--d~~G-~lwva~~~ 272 (360)
..+.|++++.+.+.||+++-. .+|++|+.+........... ..+.+-|.|+++ ..+| .+||+...
T Consensus 180 ~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ 251 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ 251 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred CccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence 467899999998899999985 68999987643222222221 123334677775 3333 25555544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.79 E-value=0.053 Score=47.27 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=62.3
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CC-CcCcceEEEecCCCEEEEEeCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
+..+++++||++.++ +..++.|..||.++++.+... .+ ....+.++++|+++.|..+..
T Consensus 10 It~~~~s~dg~~la~-----------------~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~- 71 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAI-----------------CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT- 71 (371)
T ss_dssp CCEEEECTTSSEEEE-----------------ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-
T ss_pred eEEEEECCCCCEEEE-----------------EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC-
Confidence 678899999987765 223567888887767654332 22 234688999999997665554
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.+.|..++++.........+. ........+.++++|+..+...
T Consensus 72 D~~i~vWd~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~s 114 (371)
T d1k8kc_ 72 DRNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGS 114 (371)
T ss_dssp TSCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEeecccccccccccc-cccccccccccccccccceeec
Confidence 456777777543211111111 1222355677888887555443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.78 E-value=0.1 Score=42.83 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=53.0
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCC
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 295 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~ 295 (360)
.++..++.+ +..+.|..++....+ ....+. ........+++.++|++.++...
T Consensus 215 ~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~----------------------- 267 (317)
T d1vyhc1 215 KPGPFLLSG-SRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD----------------------- 267 (317)
T ss_dssp --CCEEEEE-ETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET-----------------------
T ss_pred cCCceeEec-cCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEEC-----------------------
Confidence 344434433 345667777764321 111221 12233456788888876654433
Q ss_pred ccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CC-EEEEEeCCCCeEEEE
Q 018144 296 KLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKV 357 (360)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~Lylgs~~~~~i~~~ 357 (360)
.+.|..+|. +++.+..+....+ .++++... ++ .|..|+. ...|..+
T Consensus 268 -----------dg~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~-Dg~i~iW 316 (317)
T d1vyhc1 268 -----------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSV-DQTVKVW 316 (317)
T ss_dssp -----------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEET-TSEEEEE
T ss_pred -----------CCeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCeEEEe
Confidence 256777784 6787877765333 47777765 34 4555554 4455543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=96.77 E-value=0.14 Score=44.08 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=27.8
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CC-E-EEEEeCCCCeEEEEeC
Q 018144 308 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-H-LYVISLTSNFIGKVQL 359 (360)
Q Consensus 308 ~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~-Lylgs~~~~~i~~~~l 359 (360)
+.+..+|. +++.+..+.... .+..+.+. || + ||+.+-..+.|.++++
T Consensus 298 ~~v~~~d~~t~~~~~~~~~~~-----~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 298 KEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CeEEEEECCCCcEEEEecCCC-----CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 35666664 566666554322 24455554 34 3 6777777788888775
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.69 E-value=0.16 Score=47.39 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEEe-----------------------cCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWKF-----------------------IDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~~-----------------------~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
+|.||+++.+|.|+.+| +|+.. |.. .++++|+++.+..|+.+| .+| ...-..
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~l-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEE-EEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 78999999999999999 77532 321 146799988888899999 788 322111
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
..+.........--+--+|.+++...... ....|.|..+|..||+...
T Consensus 145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W 192 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLAW 192 (560)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred ccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEEe
Confidence 11111000011111113566777433321 1234789999999998765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.54 E-value=0.071 Score=47.71 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=54.2
Q ss_pred EEEEEcCCC---CeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC-------CcCcceeeeccCCCC-CCc
Q 018144 188 QLLKYDPSS---NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-------ERKGKLETFAENLPG-APD 256 (360)
Q Consensus 188 ~l~~~d~~t---g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g-------~~~~~~~~~~~~~~g-~pd 256 (360)
++-.+|..+ ..+..+...-..|+|+.++|||+++|++......+.+|+.+. ...-...+.++...| .|=
T Consensus 253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL 332 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 332 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence 455566542 122223333457999999999999999999989999999741 110011122221112 366
Q ss_pred eeEEcCCCCEEEEEec
Q 018144 257 NINLAPDGTFWIAIIK 272 (360)
Q Consensus 257 ~i~~d~~G~lwva~~~ 272 (360)
--.+|.+|+.|.+++-
T Consensus 333 ht~fd~~g~aytslfi 348 (459)
T d1fwxa2 333 HTAFDGRGNAYTSLFL 348 (459)
T ss_dssp EEEECTTSEEEEEETT
T ss_pred ccccCCCceEEEEeec
Confidence 6788999999999764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.19 Score=42.61 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=84.6
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC----CcCcceEEEecCCCEEEEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~----l~~pngia~~~dg~~l~v~ 224 (360)
.++.+++.+++. +.++ +...+.+..+|..+++....... ......++++||+..++++
T Consensus 161 ~v~~~~~~~~~~~~~~~-----------------~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 161 RINACHLKQSRPMRSMT-----------------VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp CEEEEEECSSSSCEEEE-----------------EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ccccccccccccceEEE-----------------eecccccccccccccccceecccccCCCCccEEeeeccccceeccc
Confidence 456788888775 3443 22356777788765655443222 2235789999985446666
Q ss_pred eCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc---CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 225 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA---PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 225 ~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d---~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
.+..+.|..|+.+..+ ....+. .......++.+. ++|.+.++...
T Consensus 224 ~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~----------------------------- 271 (325)
T d1pgua1 224 VGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGA----------------------------- 271 (325)
T ss_dssp EETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEET-----------------------------
T ss_pred cccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeC-----------------------------
Confidence 6566778888865321 122221 111112233332 67776665443
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 302 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 302 ~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. +++.+..+.............+... ++.|.-++. ...|.+++|
T Consensus 272 -----D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vwdl 325 (325)
T d1pgua1 272 -----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYEL 325 (325)
T ss_dssp -----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEET
T ss_pred -----CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEEEC
Confidence 245666674 5788777764332212222334444 466655554 477777765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.29 E-value=0.33 Score=45.23 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCCEEEEec-CCeEEEEE--C-CeeeEEE-----------------------ecCCeEEEEeCCCcEEEEc-CCC-eEEE
Q 018144 89 NGVIYTATR-DGWIKRLQ--D-GTWVNWK-----------------------FIDSHLIICDNANGLHKVS-EDG-VENF 139 (360)
Q Consensus 89 ~G~l~v~~~-~G~I~~~~--~-g~~~~~~-----------------------~~~g~L~v~~~~~gl~~~~-~~g-~~~l 139 (360)
+|.||+++. ++.|+.++ + |+. .|. ..+++||+++.+..++.+| ++| ...-
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~-~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKI-VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE-EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCce-EEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 789999885 68899998 3 642 221 2257899998888899999 788 3222
Q ss_pred eec---cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 140 LSY---VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 140 ~~~---~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
... ..+.....+- .+ -++.+++..++.. ....|.|..+|..||+...
T Consensus 141 ~~~~~~~~~~~~t~~p--~v-~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAP--FV-AKDTVLMGCSGAE------------LGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EECCCGGGTCBCCSCC--EE-ETTEEEEECBCGG------------GTCCCEEEEEETTTCCEEE
T ss_pred ccccccccccceeecC--eE-eCCeEEEeecccc------------ccccCcEEEEECCCCcEEE
Confidence 111 1111111111 22 2478888654321 2235789999999998765
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.26 E-value=0.26 Score=46.00 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=61.2
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE-----------------------ecCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK-----------------------FIDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~-----------------------~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
+|.||+++.+|.|+.+| +|+. .|. ..++++|+++.+..++.+| .+| ...-..
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~-~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNR-IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE-EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCe-EEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceeccc
Confidence 78999999999999999 7753 232 1256799998888899999 788 432222
Q ss_pred ccCCccc-cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 142 YVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 142 ~~~~~~~-~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
..++... .....--+--+|.+++...... ....|.|..+|..||+...
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W 204 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGERKW 204 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred CccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCcccee
Confidence 2111110 0011111123567777543311 2235789999999998754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.18 E-value=0.023 Score=50.98 Aligned_cols=169 Identities=10% Similarity=-0.006 Sum_probs=94.9
Q ss_pred CC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCEEEEEeCCCCE-----
Q 018144 159 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFR----- 230 (360)
Q Consensus 159 dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l~v~~t~~~~----- 230 (360)
|| .+|++|.. ++||.++|.++.++..+. .....+.|+....++++.||...+...
T Consensus 98 DGrylFVNDka-----------------n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn 160 (459)
T d1fwxa2 98 DGRFLFMNDKA-----------------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 160 (459)
T ss_dssp EEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred ceeEEEEEcCC-----------------CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCC
Confidence 67 58887643 679999999988886643 456678899988888888888754433
Q ss_pred --------------EEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecC--chhHHHHhhc---------c
Q 018144 231 --------------CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKL--DARRMKILNS---------S 284 (360)
Q Consensus 231 --------------i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~--~~~~~~~~~~---------~ 284 (360)
+..+|.+..+. ..++. .++.|+++.++.+|. +|+++... .....+..+. .
T Consensus 161 dg~~l~d~~~y~~~~t~ID~~tm~V-~~QV~---V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~ 236 (459)
T d1fwxa2 161 DGTNMEDVANYVNVFTAVDADKWEV-AWQVL---VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 236 (459)
T ss_dssp SSSSTTCGG-EEEEEEEEETTTTEE-EEEEE---ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred CCccccchhhcceEEEEEecCCceE-EEEee---eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence 34455432111 11221 345689999999997 45544331 1222222211 0
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCC----CcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAED----GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~----g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
|.+.+.+. . ......+++-.+|.. ..++..+..+.. ++-..+..++.++|+++.-++.+.++++
T Consensus 237 ~rie~av~---~-----Gk~~eingV~VVD~~~~~~~~v~~yIPVpKs---PHGV~vSPDGKyi~VaGKLs~tVSViD~ 304 (459)
T d1fwxa2 237 AEIEKAIA---A-----GDYQELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDV 304 (459)
T ss_dssp HHHHHHHH---H-----TCSEEETTEEEEECSGG--CSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred HHhHHhhh---c-----CCcEEeCCceeecccccCCcceeEEEecCCC---CCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence 11111111 0 000111234455532 234444443332 1222344456899999999999999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.11 Score=42.74 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=43.7
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.+..+++.++|++.++ +...|.|..+|..+++...... .....+.+++++|++.|+.+.. .
T Consensus 249 ~v~~~~~~~~~~~l~s-----------------~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~-D 310 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILS-----------------CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-D 310 (317)
T ss_dssp CEEEEEECSSSSCEEE-----------------EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET-T
T ss_pred CEEEEEECCCCCEEEE-----------------EECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-C
Confidence 4667888888876664 2335788889987776533322 2345678999999986655543 4
Q ss_pred CEEEEE
Q 018144 229 FRCRKY 234 (360)
Q Consensus 229 ~~i~~~ 234 (360)
+.|..+
T Consensus 311 g~i~iW 316 (317)
T d1vyhc1 311 QTVKVW 316 (317)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 555543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.04 E-value=0.17 Score=42.24 Aligned_cols=129 Identities=11% Similarity=0.026 Sum_probs=71.1
Q ss_pred EEEcCCCCEEE-EecCCeEEEEE--CCeee-----------EEEe-cCCe-EEEEeCCCcEEEEc-CCC--eEEEeeccC
Q 018144 84 ASMDKNGVIYT-ATRDGWIKRLQ--DGTWV-----------NWKF-IDSH-LIICDNANGLHKVS-EDG--VENFLSYVN 144 (360)
Q Consensus 84 i~~d~~G~l~v-~~~~G~I~~~~--~g~~~-----------~~~~-~~g~-L~v~~~~~gl~~~~-~~g--~~~l~~~~~ 144 (360)
+...+.+.+.+ +..+|.|..++ +++.. .+.. +++. |++++.+.-+..++ ... ...+....
T Consensus 190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~- 268 (340)
T d1tbga_ 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN- 268 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-
T ss_pred eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc-
Confidence 33444555544 44778777777 44321 1121 2343 44444444455555 333 22221111
Q ss_pred CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEE
Q 018144 145 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVV 223 (360)
Q Consensus 145 ~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v 223 (360)
....+..++++++|++.++ +...|.|..+|..+++......+ ....+.+++++|++.|+.
T Consensus 269 --~~~~i~~~~~s~~~~~l~~-----------------g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s 329 (340)
T d1tbga_ 269 --IICGITSVSFSKSGRLLLA-----------------GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp --CCSCEEEEEECSSSCEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred --ccCceEEEEECCCCCEEEE-----------------EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 1134567889999987665 23357788899877766554443 334578999999986655
Q ss_pred EeCCCCEEEE
Q 018144 224 CESWKFRCRK 233 (360)
Q Consensus 224 ~~t~~~~i~~ 233 (360)
+.. .+.|..
T Consensus 330 ~s~-Dg~v~i 338 (340)
T d1tbga_ 330 GSW-DSFLKI 338 (340)
T ss_dssp EET-TSCEEE
T ss_pred Ecc-CCEEEE
Confidence 543 344544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.84 E-value=0.5 Score=41.03 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=73.3
Q ss_pred EEEEcCCCCeEEEEe-------CCCcCcceEEE--ecC-CCE-EEEEeCCCCEEEEEEec--CC-cCc--ceeeeccCCC
Q 018144 189 LLKYDPSSNITTLVA-------DGFYFANGVAL--SRD-EDY-VVVCESWKFRCRKYWLK--GE-RKG--KLETFAENLP 252 (360)
Q Consensus 189 l~~~d~~tg~~~~~~-------~~l~~pngia~--~~d-g~~-l~v~~t~~~~i~~~~~~--g~-~~~--~~~~~~~~~~ 252 (360)
++.+|+..+.+..+. ..+..+.|+|+ +++ |.. +++++ ..+++..|.+. +. ... ..+.| ..+
T Consensus 103 ~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~ 179 (353)
T d1h6la_ 103 IYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRAF--KMN 179 (353)
T ss_dssp EEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEEE--ECS
T ss_pred EEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeecc--CCC
Confidence 566666555544332 23456889998 554 442 33334 35677666653 21 111 11222 244
Q ss_pred CCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCC-cEEEEEeCCCC
Q 018144 253 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDG-TIIRNLVDPTG 328 (360)
Q Consensus 253 g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g-~~~~~~~~~~g 328 (360)
.-+.++++|. .+.|||+... .++++++ +++ .....+....|
T Consensus 180 ~q~EGCVvDde~~~LyisEE~-----------------------------------~Giw~~~a~~~~~~~~~~i~~~~g 224 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRADG 224 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSTTSCSCCEEEEECSS
T ss_pred CccceEEEeCCCCcEEEecCc-----------------------------------cceEEEEeccCCCccceeeecccC
Confidence 4578899976 5789999765 3667775 332 21111211122
Q ss_pred -CcccceeeEEEE-----CCEEEEEeCCCCeEEEEeC
Q 018144 329 -QLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 329 -~~~~~~t~~~~~-----~g~Lylgs~~~~~i~~~~l 359 (360)
....-+.++... +|+|.+++-..+...+++.
T Consensus 225 ~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 225 RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 224445555432 3789999988888888864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.47 Score=38.72 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=55.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+..+...++|.+.++.. .+.+..++..+++....... .....+++++++.+.++....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTN------------------DDDLLILQSFTGDIIKSVRL--NSPGSAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp CEEEEEECSSSEEEEEET------------------TSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSEEEEEETTTS
T ss_pred ceeeeeeccCCceEEEee------------------cccceeeeccceeeeeeccc--cceeeeeeccCcceeeeccccc
Confidence 355667777887666422 34567777666654433221 2345667788887777776656
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.+..++..... ..........+....++++++|.+.++.
T Consensus 142 ~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g 180 (287)
T d1pgua2 142 TIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAG 180 (287)
T ss_dssp CEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred eeeeeeccccc--eeeeeeeccCCceeEEEeccCccccccc
Confidence 67667653211 1111111222345668888988754433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.19 Score=43.81 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--------------CcCcceEEEe
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------------FYFANGVALS 215 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--------------l~~pngia~~ 215 (360)
.++.+++.+||++.++-+. ....+.+..+|.++++....... ....+.++++
T Consensus 233 ~V~~l~~spdg~~l~sgs~--------------D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs 298 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHD--------------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298 (393)
T ss_dssp CEEEEEECSSTTEEEEEEE--------------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred eEEEcccccccceeeeecC--------------CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence 4678889999987775221 01113355677777655432210 1234679999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecC
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
||++.| ++....+.|..+|++.
T Consensus 299 pd~~~l-~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 299 DSGETL-CSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSSSEE-EEEETTSEEEEEETTT
T ss_pred CCCCee-EEECCCCEEEEEECCC
Confidence 999854 5555567888888753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.98 E-value=1.4 Score=40.76 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEe
Q 018144 304 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 348 (360)
Q Consensus 304 ~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs 348 (360)
....+.+..+|. +|+++..+..+.+.. ..+. ..+.+|+.||+-
T Consensus 481 G~~dg~l~A~Da~tGe~lW~~~l~~~~~-a~P~-ty~~dGkqYi~v 524 (571)
T d2ad6a1 481 ATLDGYLKALDNKDGKELWNFKMPSGGI-GSPM-TYSFKGKQYIGS 524 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEEE
T ss_pred ECCCCeEEEEECCCCcEEEEEECCCCce-ecce-EEEECCEEEEEE
Confidence 344578999996 699999998877642 2222 235589999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.86 Score=36.97 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=89.7
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCeee-E---------EEecCCeEEEEeCCCcEEE-EcCCCeEEEeeccCC
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-N---------WKFIDSHLIICDNANGLHK-VSEDGVENFLSYVNG 145 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~-~---------~~~~~g~L~v~~~~~gl~~-~~~~g~~~l~~~~~~ 145 (360)
..|..++..+++.+.+...++.+..++ +++.. . +...+..+.++....+.++ ++-...+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-~~ 159 (287)
T d1pgua2 81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-KT 159 (287)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-SS
T ss_pred cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeee-ee
Confidence 467888888888888877777787777 44322 1 2223455666665544433 332221111111 11
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecC------
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRD------ 217 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~d------ 217 (360)
.....+..++++++|...++ +...|.|..||..+++....... ....+.++++|+
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~-----------------g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAA-----------------GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEE-----------------EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred ccCCceeEEEeccCcccccc-----------------ccccccccceeecccccccccccccccccceeeeccccccccc
Confidence 11124678899999975554 22356788888877765432111 123456666554
Q ss_pred ----CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 218 ----EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 218 ----g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
++ ++++....+.|..++++... .....+ ....+....+.+.+++.+..+
T Consensus 223 ~~~~~~-~l~sgs~D~~i~iw~~~~~~-~~~~~~-~~h~~~V~~v~~~~~~~l~s~ 275 (287)
T d1pgua2 223 EEIEED-LVATGSLDTNIFIYSVKRPM-KIIKAL-NAHKDGVNNLLWETPSTLVSS 275 (287)
T ss_dssp -CCSCC-EEEEEETTSCEEEEESSCTT-CCEEET-TSSTTCEEEEEEEETTEEEEE
T ss_pred ccCCCC-eeEeecCCCeEEEEECCCCC-eEEEEe-CCCCCCeEEEEECCCCEEEEE
Confidence 34 44454455678888864321 112221 122233456666666654433
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=1.2 Score=36.55 Aligned_cols=130 Identities=8% Similarity=0.043 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 185 PHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
..+.|..+|..++.......+ ....+.++++ ++.+ ++....+.|..++.+... . .+.........-....++
T Consensus 221 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~~~~~dg~i~iwd~~~~~---~-~~~~~~~~~~~~~~~~~~ 293 (355)
T d1nexb2 221 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYS---R-KFSYHHTNLSAITTFYVS 293 (355)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEE-EEECTTSEEEEEETTTCC---E-EEEEECTTCCCCCEEEEC
T ss_pred ccceEEeeeccccccccccccccccccccccc--ccee-eeeecccccccccccccc---e-ecccccCCceEEEEEcCC
Confidence 345677777776665444333 2234566665 4544 444556788888875321 1 111111111112334566
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEECC
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDN 342 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g 342 (360)
+++.++... +.|..+| .+|+.+....... ...+.++...++
T Consensus 294 ~~~l~~g~d-----------------------------------~~i~vwd~~tg~~~~~~~~~~---~~~V~~v~~~~~ 335 (355)
T d1nexb2 294 DNILVSGSE-----------------------------------NQFNIYNLRSGKLVHANILKD---ADQIWSVNFKGK 335 (355)
T ss_dssp SSEEEEEET-----------------------------------TEEEEEETTTCCBCCSCTTTT---CSEEEEEEEETT
T ss_pred CCEEEEEeC-----------------------------------CEEEEEECCCCCEEEEEecCC---CCCEEEEEEcCC
Confidence 777776544 4677777 4577653221111 234677777776
Q ss_pred EEEEE-eCCCC-eEEEEeC
Q 018144 343 HLYVI-SLTSN-FIGKVQL 359 (360)
Q Consensus 343 ~Lylg-s~~~~-~i~~~~l 359 (360)
.+.++ +..+. +|.++++
T Consensus 336 ~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 336 TLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp EEEEEEESSSCEEEEEEEC
T ss_pred eEEEEEECCCcEEEEEEeC
Confidence 66554 44443 5676664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.97 E-value=0.07 Score=43.94 Aligned_cols=53 Identities=13% Similarity=0.007 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC--CC---CEEEEEEecCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WK---FRCRKYWLKGE 239 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--~~---~~i~~~~~~g~ 239 (360)
|.|+.+|.++++.+.+..........+++|||+.+.++.. .. ..|+.++.++.
T Consensus 21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 5688888888888777666556677899999997776532 11 24777777654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=2 Score=38.35 Aligned_cols=61 Identities=5% Similarity=-0.073 Sum_probs=37.6
Q ss_pred EEEecCCCEEEEEeCC----CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 212 VALSRDEDYVVVCESW----KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~----~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
++++++++.+|++.+. ...|++++++|....+.-.......+.-..+.++++|..+|-...
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 5689999999988653 335999988775322211100011112346788999998886654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.48 E-value=2.8 Score=38.44 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=27.6
Q ss_pred ceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 307 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 307 ~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
.+.+..||. +|+++..+..+.+.. ..+. ..+.+|+-||.
T Consensus 478 dg~l~A~Da~tGe~LW~~~l~~~~~-~~P~-ty~~dGkqyv~ 517 (560)
T d1kv9a2 478 AGQMHAYSADKGEALWQFEAQSGIV-AAPM-TFELAGRQYVA 517 (560)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEE
T ss_pred CCcEEEEECCCCcEeEEEECCCCcc-ccCE-EEEECCEEEEE
Confidence 478899995 799999999887652 2232 23567877765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=1.8 Score=35.49 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=16.9
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE--CCe
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ--DGT 108 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~--~g~ 108 (360)
++..| +..|..|+.||.|..+| +++
T Consensus 18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~ 44 (355)
T d1nexb2 18 CLQFE-DNYVITGADDKMIRVYDSINKK 44 (355)
T ss_dssp EEEEE-TTEEEEEETTTEEEEEETTTTE
T ss_pred EEEEC-CCEEEEEeCCCeEEEEECCCCc
Confidence 45554 34567777899998888 554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.84 Score=39.41 Aligned_cols=106 Identities=12% Similarity=0.009 Sum_probs=58.8
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-------CCcCcceEEEecCCCEE
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------GFYFANGVALSRDEDYV 221 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-------~l~~pngia~~~dg~~l 221 (360)
..++.+++.++|.|.. +..++.|..+|..+++...... .....+.++++|||+.|
T Consensus 185 ~~~~~v~~s~dg~las------------------gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 246 (393)
T d1sq9a_ 185 QFATSVDISERGLIAT------------------GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246 (393)
T ss_dssp CCCCEEEECTTSEEEE------------------ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred CcEEEEEECCCCEEEE------------------EeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence 3567788888884433 3346788889988776543221 11235789999999977
Q ss_pred EEEeCCC--CEEEEEEecCCc-Ccceeee------ccC---CCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWK--FRCRKYWLKGER-KGKLETF------AEN---LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~--~~i~~~~~~g~~-~~~~~~~------~~~---~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..+...+ ..|..++++... ....+.. ... ..+....+++.++|++.++...
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence 6654322 234555654221 1111100 000 1112345788999987776544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.82 E-value=0.74 Score=40.93 Aligned_cols=78 Identities=10% Similarity=-0.167 Sum_probs=48.7
Q ss_pred ccccEEEcCCCc-EE-EEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGS-LY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~-vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
.+.++.+.|||+ |. .++... +......+.++.||.++++...+...-.....+.++|||+.+.+..
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~~~----------~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-- 130 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNYVK----------QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-- 130 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEEEE----------CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--
T ss_pred ccceeEECCCCCEEEEEECCcc----------eeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--
Confidence 467888999996 33 332110 1112234678889999888765443333455678999998666654
Q ss_pred CCEEEEEEecCC
Q 018144 228 KFRCRKYWLKGE 239 (360)
Q Consensus 228 ~~~i~~~~~~g~ 239 (360)
++.++.++..+.
T Consensus 131 ~~~l~~~~~~~g 142 (470)
T d2bgra1 131 NNDIYVKIEPNL 142 (470)
T ss_dssp TTEEEEESSTTS
T ss_pred cccceEEECCCC
Confidence 346777776543
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=92.54 E-value=1.8 Score=33.78 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=85.7
Q ss_pred cchhcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE----CC----------------eee-EEEecCCeEEE
Q 018144 63 SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ----DG----------------TWV-NWKFIDSHLII 121 (360)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~----~g----------------~~~-~~~~~~g~L~v 121 (360)
..+-+..+.+|+.+.+..=.-|++.++|.||.... |.+|+=. +. .++ .+.++.|-||+
T Consensus 24 ~dn~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~Lya 102 (235)
T d1tl2a_ 24 NDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYA 102 (235)
T ss_dssp TCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEE
T ss_pred cccccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEE
Confidence 33455677888887788888899999999997654 4677543 11 011 23456788887
Q ss_pred EeCCCcEEEEc-CCC-eEE-E--eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 122 CDNANGLHKVS-EDG-VEN-F--LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 122 ~~~~~gl~~~~-~~g-~~~-l--~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
.+. ..|++-. ++. ... + +..+....-+...-|.+||+|.||-.. ++++++-.|-+
T Consensus 103 Vt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~-------------------~~~l~k~~pP~ 162 (235)
T d1tl2a_ 103 VSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFYKALPPV 162 (235)
T ss_dssp EET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEEEECCCS
T ss_pred ecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEE-------------------CCcEEEcCCCC
Confidence 663 4566655 221 110 0 111111112334567889999999853 23577766643
Q ss_pred Ce-------EEEEe-CCCcCcceEEEecCCCEEEEEeCCCCEEEE
Q 018144 197 NI-------TTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRK 233 (360)
Q Consensus 197 g~-------~~~~~-~~l~~pngia~~~dg~~l~v~~t~~~~i~~ 233 (360)
+. -+.+. .+-..+..|.+++||+ |+.+. ++.+++
T Consensus 163 ~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~--~g~~Y~ 204 (235)
T d1tl2a_ 163 SNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYE 204 (235)
T ss_dssp STTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEE
T ss_pred CCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe--CCeEEe
Confidence 31 12233 2334567999999998 55553 244554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=2.2 Score=34.56 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=68.2
Q ss_pred EEEcCCC-CEEEEecCCeEEEEE--CCee-----------eEEEecCCeEEEEeCCCcEEEEc-CCC--eEEEeeccCCc
Q 018144 84 ASMDKNG-VIYTATRDGWIKRLQ--DGTW-----------VNWKFIDSHLIICDNANGLHKVS-EDG--VENFLSYVNGS 146 (360)
Q Consensus 84 i~~d~~G-~l~v~~~~G~I~~~~--~g~~-----------~~~~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~ 146 (360)
.....++ .+..++.+|.|..++ .++. ..+...++.|+.+..++.+..++ .+. ...+......
T Consensus 181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~- 259 (342)
T d2ovrb2 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH- 259 (342)
T ss_dssp EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-
T ss_pred ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccccccccccccee-
Confidence 3333344 455666888888777 3322 12233345566655555566666 333 3233211110
Q ss_pred cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCC-----CcCcceEEEecCCCE
Q 018144 147 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-----FYFANGVALSRDEDY 220 (360)
Q Consensus 147 ~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~-----l~~pngia~~~dg~~ 220 (360)
...+. ++..++++.++ +...|.|..+|..+++... +... ....+.+++++++.
T Consensus 260 -~~~~~--~~~~~~~~~~s-----------------~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~- 318 (342)
T d2ovrb2 260 -QSAVT--CLQFNKNFVIT-----------------SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL- 318 (342)
T ss_dssp -SSCEE--EEEECSSEEEE-----------------EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-
T ss_pred -eecee--ecccCCCeeEE-----------------EcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC-
Confidence 11222 33344555554 3346789999988887643 2211 12356789999986
Q ss_pred EEEEeCCC----CEEEEEEec
Q 018144 221 VVVCESWK----FRCRKYWLK 237 (360)
Q Consensus 221 l~v~~t~~----~~i~~~~~~ 237 (360)
++++.... .+|+.+|.+
T Consensus 319 ~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 319 VCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEECSSSSSCCEEEEEECC
T ss_pred EEEEEeCCCCCeeEEEEEeCC
Confidence 44443322 357777754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.25 E-value=2.9 Score=33.37 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=44.2
Q ss_pred eEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEE-ecCC-eEE-EEeCC-----CcEEEEc-CCC-eEEEeeccC--Ccc
Q 018144 83 DASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK-FIDS-HLI-ICDNA-----NGLHKVS-EDG-VENFLSYVN--GSK 147 (360)
Q Consensus 83 ~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~-~~~g-~L~-v~~~~-----~gl~~~~-~~g-~~~l~~~~~--~~~ 147 (360)
.|++..+|.||+-+ .+|...++. .+...... .++| +|. +.... ..++.++ .+| .+.+..... ...
T Consensus 14 ~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~ 93 (281)
T d1k32a2 14 RIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGR 93 (281)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETT
T ss_pred EEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCc
Confidence 56777778888887 566777776 23322222 2344 443 33211 1366777 455 554422111 111
Q ss_pred ccccccEEEcCCCc-EEEEeC
Q 018144 148 LRFANDVVEASDGS-LYFTVS 167 (360)
Q Consensus 148 ~~~~n~l~~d~dG~-l~vtd~ 167 (360)
..........+||+ |+++..
T Consensus 94 ~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 94 RMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp EECSEEEEECTTCCEEEEECT
T ss_pred cccccccccCCCCCEEEEEEc
Confidence 12345667888995 666543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=3.4 Score=32.86 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=41.1
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.-+..|||+ |.|+... .....++.++..++..+.+...........+++||+.++......
T Consensus 43 sP~wSPDGk~IAf~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~ 104 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFE---------------SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT 104 (269)
T ss_dssp EEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred eeEECCCCCEEEEEEee---------------ccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC
Confidence 347899994 5554221 123467888888777777666666667788999999777665543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.40 E-value=6.4 Score=35.94 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=28.1
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 305 GGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
...+.+..+|. +|+++..++.+.+.. ..+.. .+.+|+.||.
T Consensus 495 ~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~t-y~~~GkQYv~ 536 (573)
T d1kb0a2 495 TADGRLVAYHAATGEKLWEAPTGTGVV-AAPST-YMVDGRQYVS 536 (573)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCC-SCCEE-EEETTEEEEE
T ss_pred CCCCeEEEEECCCCcEeEEEECCCCcc-ccCEE-EEECCEEEEE
Confidence 33478999995 799999999887652 22222 2467887764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.68 E-value=2.2 Score=37.63 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=50.9
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC------CCEEEEEEecCCcCcceeeeccCCCCC---Cc
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLPGA---PD 256 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~------~~~i~~~~~~g~~~~~~~~~~~~~~g~---pd 256 (360)
...|+.++.+++....+..+-....++ ++.|++.+|++.+. ...|+++++++.. ..+.+...+.+. -.
T Consensus 343 ~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~~~ 419 (470)
T d2bgra1 343 YRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT--KVTCLSCELNPERCQYY 419 (470)
T ss_dssp CEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTT--CEEESSTTTSTTTBCBE
T ss_pred CceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCC--ceeEecccccCCCCCEE
Confidence 457899998866666655554445555 45566678776542 2259999987642 222222122221 23
Q ss_pred eeEEcCCCCEEEEEec
Q 018144 257 NINLAPDGTFWIAIIK 272 (360)
Q Consensus 257 ~i~~d~~G~lwva~~~ 272 (360)
.+.+++||.+++.+..
T Consensus 420 s~~fSpdgky~~~~~s 435 (470)
T d2bgra1 420 SVSFSKEAKYYQLRCS 435 (470)
T ss_dssp EEEECTTSSEEEEEEC
T ss_pred EEEECCCCCEEEEEec
Confidence 5778999998887665
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=88.19 E-value=0.96 Score=35.40 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=62.1
Q ss_pred hcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CCe------------------ee-EEEecCCeEEEEeC
Q 018144 66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT------------------WV-NWKFIDSHLIICDN 124 (360)
Q Consensus 66 ~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~------------------~~-~~~~~~g~L~v~~~ 124 (360)
-...+.+|+.+.-..=.-+.+|++|.||..+. |.|||=. +.+ ++ .+.++.|.||...
T Consensus 74 wf~~atrIG~ggWn~FkflffdP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~- 151 (235)
T d1tl2a_ 74 WMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 151 (235)
T ss_dssp HHHHCEEEECSCGGGCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred HHHhhhhcccCcccceEEEEECCCceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEE-
Confidence 34777889887655666789999999998884 7999875 221 11 2345688899765
Q ss_pred CCcEEEEc-CCC--eEEE--eeccCCccccccccEEEcCCCcEEEE
Q 018144 125 ANGLHKVS-EDG--VENF--LSYVNGSKLRFANDVVEASDGSLYFT 165 (360)
Q Consensus 125 ~~gl~~~~-~~g--~~~l--~~~~~~~~~~~~n~l~~d~dG~l~vt 165 (360)
..++++-. +.+ -..+ .+.+....-..+..|.+.++|+||-.
T Consensus 152 ~~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v 197 (235)
T d1tl2a_ 152 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV 197 (235)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred CCcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence 44577766 332 1111 11111111234568899999999984
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.16 E-value=11 Score=34.41 Aligned_cols=46 Identities=17% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE---------------------ecCCeEEEEeCCCcEEEEc-CCC
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK---------------------FIDSHLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~---------------------~~~g~L~v~~~~~gl~~~~-~~g 135 (360)
+|.||+++.+|.|+.+| +|+.. |. ..+++||+++.+..++.+| ++|
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~l-W~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG 137 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTG 137 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSC
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeE-EEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEeccccc
Confidence 78999999999999999 77532 22 1256799999888899999 778
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.42 E-value=10 Score=34.59 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.8
Q ss_pred ceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 307 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 307 ~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
.+.+..+|. .|+++..+..+.+.. ..+. ..+.+|+-||+
T Consensus 506 dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~-ty~~~G~qYv~ 545 (582)
T d1flga_ 506 DGYFKAFDAKSGKELWKFQTGSGIV-SPPI-TWEQDGEQYLG 545 (582)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEE
T ss_pred CCeEEEEECCCCcEeEEEECCCCcc-ccCE-EEEECCEEEEE
Confidence 468999995 799999999877652 2232 34578887765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.52 E-value=12 Score=29.72 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=70.3
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC-ceeEEcCC
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP-DNINLAPD 263 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p-d~i~~d~~ 263 (360)
..|.|..+|..+++........ ...-.+++++++.++.+. ..+.|..++....+ ....+. ...... .-..+..+
T Consensus 195 ~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~s-~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 269 (342)
T d2ovrb2 195 LDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGN-ADSTVKIWDIKTGQ--CLQTLQ-GPNKHQSAVTCLQFN 269 (342)
T ss_dssp TTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEE-TTSCEEEEETTTCC--EEEEEC-STTSCSSCEEEEEEC
T ss_pred CCCeEEEeecccceeeeEeccc-ccceeEEecCCCEEEEEc-CCCEEEEEeccccc--cccccc-ccceeeeceeecccC
Confidence 3567888887766654333221 122233445556555444 45678888875432 122221 111111 12334445
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC-CCCcccceeeEEEEC
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP-TGQLMSFVTSGLQVD 341 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~-~g~~~~~~t~~~~~~ 341 (360)
+++.++... .+.|..+| ..|+.+..+... .+.....++.+....
T Consensus 270 ~~~~~s~s~----------------------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 270 KNFVITSSD----------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp SSEEEEEET----------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CCeeEEEcC----------------------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 666655443 35777777 468888777532 222234577777775
Q ss_pred CEEE--EEeCCC---CeEEEEeCC
Q 018144 342 NHLY--VISLTS---NFIGKVQLS 360 (360)
Q Consensus 342 g~Ly--lgs~~~---~~i~~~~l~ 360 (360)
+..+ .|+..+ -+|.+++++
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCEEEEEeCCCCCeeEEEEEeCC
Confidence 4333 333333 357777764
|