Citrus Sinensis ID: 018154

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQTVMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYISTEDERESNCSNMLKFEIPDILDVNEFM
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccHHHcccccccccHccHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHcHHccccHcccEEcccccccHHHcc
Coil and Loop (DISEMBL)
mgrapccdksglkkgpwtpeedQKLIDYIQkhgygnwrtlpknaglqrcgkscrlrwtnylrpdikrgrfafeEEETIIQLHSILGNKWSAIAarlpgrtdneiKNYWNTHIRKRLLrmgidpvthsprldlldlssilsssfysssQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFqenqyqqlvqpdshqlqipleacctltpppppcvshsndqaqlmnsnveqfptnftnfsnqncqqsewqsngmpsnltedyvpippsysyygsdqtvmdpssetsnfhsnnsnqsfnfasvlstpssgstplnsnstyistederesncsnmlkfeipdildvnefm
Flexible Loop (DISEMBL)
mgrapccdksglkkgpwtpeeDQKLIDYIQKHGygnwrtlpknaglqrcgkscrlrwtnylrpdikrgrfAFEEEETIIQLHSILGNKWSAIAARlpgrtdneiknYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQTVMDPSSETSNFHSNNSNQSFNFASVLStpssgstplnsNSTYISTEderesncsnmlkfeipdildvnefm
Low Complexity Region (SEG)
MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRldlldlssilsssfysssQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTpppppCVSHSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQTVMDPSSETsnfhsnnsnqsfnfasVLSTPSSGSTPLNSNSTYISTEDERESNCSNMLKFEIPDILDVNEFM
Disordered region (IsUnstruct)
***********************KLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHH****QNQIQKFIYQNFQENQYQQLVQP**HQLQIPLEACC************************************************************************************************************************************I**********
Disordered Region (DISOPRED)
*GRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGI****************************************************************************************************************************************************************SYYGSDQTVMDPSSETSN*HSNNS**********************************SNCSNMLKFEIPDILDVNEFM
Disordered Region (DISEMBL)
MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQTVMDPSSETSNFHSNNSNQSFNFASV***************************CSNMLKFEIPDILDVNEFM
Disordered Region (DISPRO)
***APCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLD*****************************************************************QL***DS**LQIPLEACCTLT****************************************************************************************************************STEDERESNCSNMLKFEIPDILDVNEFM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQTVMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYISTEDERESNCSNMLKFEIPDILDVNEFM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q8GWP0	360	Transcription factor MYB3	no	no	0.411	0.411	0.688	2e-59
O49608	274	Transcription factor MYB3	no	no	0.355	0.467	0.718	6e-55
Q7XBH4	257	Myb-related protein Myb4	no	no	0.322	0.451	0.784	1e-54
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.355	0.435	0.726	2e-54
Q9S9K9	257	Transcription factor MYB3	no	no	0.35	0.490	0.730	2e-54
Q9SZP1	282	Transcription repressor M	no	no	0.355	0.453	0.703	1e-53
Q9SPG2	366	Transcription factor MYB2	no	no	0.355	0.349	0.695	1e-53
Q38851	236	Transcription repressor M	no	no	0.35	0.533	0.714	2e-53
P20025	255	Myb-related protein Zm38	N/A	no	0.355	0.501	0.695	2e-53
P81393	232	Myb-related protein 308 O	N/A	no	0.35	0.543	0.722	3e-53

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 124/151 (82%), Gaps = 3/151 (1%)

Query: 1   MGRAPCCDK-SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTN 59
           MGR+PCCD+  G+KKGPW PEED KL  YI ++GYGNWR+LPK AGL RCGKSCRLRW N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRM 119
           YLRPDI+RG+F+  EE TI++LH++LGNKWS IA  LPGRTDNEIKNYWNTH+RK+LL+M
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query: 120 GIDPVTHSPRLDLLDLSSILSSSFYSSSQMN 150
           GIDPVTH PR +  DLS IL  S   ++ +N
Sbjct: 121 GIDPVTHEPRTN--DLSPILDVSQMLAAAIN 149

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  214 bits (546), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 107/128 (83%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K    KG WT EED KLI YI+ HG G WR+LP++AGLQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  EE++ II+LHS+LGNKWS IA RLPGRTDNEIKNYWNTH++++LLR G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPVTHSP 128
           IDP TH P
Sbjct: 121 IDPATHRP 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 104/116 (89%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCC+K GLKKGPWTPEED+ L+ +IQ+HG+GNWR LPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
           LRPDIKRG F+ EEE+TII LH +LGN+WSAIAARLPGRTDNEIKN W+TH++KRL
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 108/128 (84%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR PCCDK G+KKGPWT EED+KLI +I  +G   WR +PK AGL+RCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG  +  EE+ +I LHS LGN+WS IAARLPGRTDNEIKN+WNTHI+K+LL+MG
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 121 IDPVTHSP 128
           IDPVTH P
Sbjct: 121 IDPVTHEP 128

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 108/126 (85%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K+ + KG WT EEDQ L+DYI+KHG G WR+LP+ AGLQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  EE+E II+LHS+LGNKWS IA RLPGRTDNEIKNYWNTHI+++LL  G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPVTH 126
           IDP +H
Sbjct: 121 IDPNSH 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 106/128 (82%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K+   KG WT EED++L+ YI+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  EE+E II+LHS+LGNKWS IA RLPGRTDNEIKNYWNTHIR++L+  G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPVTHSP 128
           IDP +H P
Sbjct: 121 IDPTSHRP 128

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 101/128 (78%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           M R PCC   GLKKG WT EED+KLI YI  HG G WR +P+ AGL+RCGKSCRLRWTNY
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           L+P+IKRG F+ EEE+ II LH+  GNKWS IA  LP RTDNEIKNYWNTH++KRL+  G
Sbjct: 61  LKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQG 120

Query: 121 IDPVTHSP 128
           IDPVTH P
Sbjct: 121 IDPVTHKP 128

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 107/126 (84%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K+   KG WT EEDQ+L+DYI+ HG G WR+LPK+AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  +E++ II+LHS+LGNKWS IA RLPGRTDNEIKNYWNTHI+++LL  G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPVTH 126
           IDP TH
Sbjct: 121 IDPQTH 126

Arabidopsis thaliana (taxid: 3702)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 108/128 (84%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K+   +G WT EED++L+ YI+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  +E++ I++LHS+LGNKWS IAARLPGRTDNEIKNYWNTH+R++LL  G
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Query: 121 IDPVTHSP 128
           IDPVTH P
Sbjct: 121 IDPVTHRP 128

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 104/126 (82%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCC+K+   KG WT EED +L+ YI+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F  EE+E II+LHS+LGNKWS IA RLPGRTDNEIKNYWNTHIR++LL  G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 IDPVTH 126
           IDP TH
Sbjct: 121 IDPTTH 126

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
225468618	362	PREDICTED: uncharacterized protein LOC10	0.958	0.953	0.718	1e-131
224078836	376	predicted protein [Populus trichocarpa]	0.972	0.930	0.676	1e-130
356554989	368	PREDICTED: uncharacterized protein LOC77	0.975	0.953	0.697	1e-129
302398945	352	MYB domain class transcription factor [M	0.955	0.977	0.690	1e-123
22795039	375	putative MYB transcription factor [Popul	0.958	0.92	0.658	1e-123
356549421	375	PREDICTED: uncharacterized protein LOC10	0.986	0.946	0.668	1e-122
224114101	374	predicted protein [Populus trichocarpa]	0.977	0.941	0.659	1e-121
297745651	325	unnamed protein product [Vitis vinifera]	0.838	0.929	0.678	1e-118
388501336	344	unknown [Lotus japonicus]	0.930	0.973	0.655	1e-108
255567435	342	r2r3-myb transcription factor, putative	0.888	0.935	0.643	1e-107

>gi|225468618|ref|XP_002266049.1| PREDICTED: uncharacterized protein LOC100245492 [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/376 (71%), Positives = 304/376 (80%), Gaps = 31/376 (8%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCCDK+GLKKGPWTPEEDQKLIDYIQK+GYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKNGLKKGPWTPEEDQKLIDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRE 180
           IDPVTHSPRLDLLDLSSILS+S Y+SS MN+SR +G Q LVNPELLRLATSLMS+   RE
Sbjct: 121 IDPVTHSPRLDLLDLSSILSTSLYNSSHMNVSRFLGMQPLVNPELLRLATSLMSS--QRE 178

Query: 181 NQNQIQKFIYQNFQENQ---------YQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSN 231
           N N    F+ QN QENQ         +  LVQP+  Q+Q P++      P   P  S  +
Sbjct: 179 NPN----FLLQNVQENQLCNAQVQNSFTHLVQPN--QIQTPIQEI----PACNPLSSSFS 228

Query: 232 DQAQLMNSNVEQFPTNFTNFSNQNCQQ-SEWQSNGMPSNLTED-YVPIPPSYSYYGSDQT 289
           +++Q+M  N EQFP+N T+FS+QN Q  S+WQSNG+PS+L+E+ YVP P S  YYGS+QT
Sbjct: 229 NESQVMEPNAEQFPSNITDFSSQNSQLISDWQSNGLPSDLSEEYYVPHPSSVGYYGSEQT 288

Query: 290 VMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI--STEDERE-SNCSNM- 345
           +MDPSS+ S F SNN   +F+FASVLSTPSS  TPLNSNSTYI  STEDERE S  SNM 
Sbjct: 289 IMDPSSDNSVFQSNN---NFSFASVLSTPSSSPTPLNSNSTYINSSTEDEREISYGSNMY 345

Query: 346 LKFEIPD-ILDVNEFM 360
           LKFE PD +LDVN  M
Sbjct: 346 LKFETPDHLLDVNYEM 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078836|ref|XP_002305647.1| predicted protein [Populus trichocarpa] gi|222848611|gb|EEE86158.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/386 (67%), Positives = 295/386 (76%), Gaps = 36/386 (9%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCCDK+GLKKGPWTPEEDQKL+DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPR-LDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHR 179
           IDPVTHSPR   L   S + SS + SS QMN+SR++G   LVNP LLRLATSL+S+    
Sbjct: 121 IDPVTHSPRLDLLDLSSILSSSLYNSSDQMNMSRMLGVPPLVNPGLLRLATSLLSSQ--- 177

Query: 180 ENQNQIQKFIYQNFQE-----------NQYQQLVQPDSHQLQIP---LEACCTLTPPPPP 225
             ++Q Q F+ QN QE           +QY+ ++   + Q Q P   +  C TLT    P
Sbjct: 178 --RDQTQNFVIQNGQEENHLPNPQVQQSQYESMIHQANIQFQTPGQEMPTCTTLT--TSP 233

Query: 226 CVSHSNDQAQLMNSNVEQF-PTNFTNFSNQNCQQS---EWQSNGMPSNLTED-YVPIPPS 280
           CV+ SN+ A++M+ NV+Q+  +  TNFS+ N Q S   +WQ+NGM SNL ED YVP   S
Sbjct: 234 CVTFSNE-ARIMDPNVDQYQSSTITNFSSPNSQFSTHDQWQNNGMGSNLAEDYYVPAVSS 292

Query: 281 Y---SYYGSDQTVMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI---ST 334
           Y    YYGSD  +MDPSSETS F SN+SNQ+F FASVLSTPSS  TPLNSNSTYI   S 
Sbjct: 293 YNSNGYYGSD--LMDPSSETSTFISNSSNQNFGFASVLSTPSSSPTPLNSNSTYINSSSA 350

Query: 335 EDERESNCSNMLKFEIPDILDVNEFM 360
           EDERES CSN+LKFEIPDILD   FM
Sbjct: 351 EDERESYCSNILKFEIPDILDAINFM 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554989|ref|XP_003545823.1| PREDICTED: uncharacterized protein LOC778071 [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/377 (69%), Positives = 298/377 (79%), Gaps = 26/377 (6%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCCDK+GLKKGPWT EEDQKLIDYIQK+GYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIA+RLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGA-QTLVNPELLRLATSLMST---H 176
           IDPVTHSPRLDLLD++SIL++SFY SSQ+NI RL+G  Q +VNPELL+LA+SL ST    
Sbjct: 121 IDPVTHSPRLDLLDINSILNASFYGSSQINIQRLLGMHQYMVNPELLKLASSLFSTSQQQ 180

Query: 177 HHRENQNQIQKFIYQN-FQENQYQQLVQPDSHQLQIPLE---ACCTLTPPPPPCVSHSND 232
           H+  +    QK   QN   + Q Q  V P   Q Q P++   AC T+     PCVS    
Sbjct: 181 HNDPDDMPAQKGQLQNQLCDPQIQNHV-PHFVQFQDPVQEVPACSTMF--STPCVSIPLT 237

Query: 233 QAQLMN-SNVEQFPTN-FTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSD-QT 289
           Q QL+  +NV+Q+P++ FT+FS Q  Q S+WQ     S+LT+DYVP   SY+YY SD Q 
Sbjct: 238 QPQLVEPNNVDQYPSSTFTDFSYQ--QLSDWQL----SSLTDDYVPQLSSYNYYSSDGQN 291

Query: 290 VM-DPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI---STEDERES--NCS 343
           +M DP SE SNFHSNNSNQ+F FASVLSTPSS  TPLNSNST I   +TEDER+   + S
Sbjct: 292 LMYDPLSEPSNFHSNNSNQNFRFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSS 351

Query: 344 NMLKFEIPDILDVNEFM 360
           NMLKFEIPDILDVNEFM
Sbjct: 352 NMLKFEIPDILDVNEFM 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398945|gb|ADL36767.1| MYB domain class transcription factor [Malus x domestica]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/368 (69%), Positives = 285/368 (77%), Gaps = 24/368 (6%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCCDK+GLKKGPWTPEEDQKL+DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCDKNGLKKGPWTPEEDQKLMDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQM-NISRLVGAQTLVNPELLRLATSLMSTHHHR 179
           IDPVTHSPRLDLLD SSIL +S +   QM N SRL+G    +NPELLRLATSL+ +   R
Sbjct: 121 IDPVTHSPRLDLLDFSSILYNSSHHHHQMNNFSRLLGQPIGLNPELLRLATSLIQS--RR 178

Query: 180 ENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNS 239
           EN N  Q F+ QN QEN Y Q+  P     Q   +            V + N+ +QLM  
Sbjct: 179 EN-NSNQNFVLQNAQENDYHQICNPQIQPQQPVQDN-----------VPYPNEVSQLMQQ 226

Query: 240 --NVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSD--QTVMDPSS 295
             NVE +P++ ++F +QN Q +EWQSN   SN TE+YV + PS++Y+GS+  QTV+D S 
Sbjct: 227 QPNVE-YPSSLSDFRSQNSQLNEWQSNVGTSNFTEEYVEL-PSFAYFGSEQHQTVLDLSP 284

Query: 296 ETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI---STEDERESNCSNMLKFEIPD 352
           E SNFHSNNSNQ+F+F SV STPSS  T LNSNST      TEDERES CSNMLKF IPD
Sbjct: 285 ENSNFHSNNSNQNFSFTSVFSTPSSSPTTLNSNSTTYFNSGTEDERESYCSNMLKFGIPD 344

Query: 353 ILDVNEFM 360
           IL VNEFM
Sbjct: 345 ILGVNEFM 352

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22795039|gb|AAN05422.1| putative MYB transcription factor [Populus tremula x Populus alba]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/390 (65%), Positives = 290/390 (74%), Gaps = 45/390 (11%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCC+K+GLK+GPWTP+EDQKLI YIQKHGYGNWRTLPKNA LQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCEKNGLKRGPWTPDEDQKLIGYIQKHGYGNWRTLPKNAELQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLH ILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHGILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHH--- 177
           IDPVTHSPRLDLLDLSSIL+S  Y SS+MN+SR++G Q L +PELLRLATSL+S+     
Sbjct: 121 IDPVTHSPRLDLLDLSSILNSPLYDSSRMNMSRILGVQPLGDPELLRLATSLLSSQRDQT 180

Query: 178 --------HREN--------QNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTP 221
                   H+EN        QNQ Q  I+   Q NQ+Q   Q         + AC  LT 
Sbjct: 181 QDFAIPNGHQENHLSSPQVHQNQNQSIIH---QANQFQPAGQ--------EMPACTALT- 228

Query: 222 PPPPCVSHSNDQAQLMNSNVEQFP-TNFTNFSNQNCQQS---EWQSNGMPSNLTEDYVPI 277
              PCV+ SN +AQ M+ N +Q+  +  T FS+ N Q S   +WQSN M SNL+EDY  +
Sbjct: 229 -TTPCVTFSN-EAQQMDPNGDQYHLSTITTFSSPNSQVSTHDQWQSNRMGSNLSEDYY-V 285

Query: 278 PPSYSYYGSDQT----VMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI- 332
           P   SY  +D      ++DPSSE S F SNNSNQ+F FASVLSTPSS   PLNSNSTYI 
Sbjct: 286 PAVSSYNSADNCRGTDLVDPSSEASTFISNNSNQTFGFASVLSTPSSSPAPLNSNSTYIN 345

Query: 333 --STEDERESNCSNMLKFEIPDILDVNEFM 360
             STEDER+S CSN LKFEIPDILDV+ FM
Sbjct: 346 CSSTEDERDSYCSNFLKFEIPDILDVSNFM 375

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549421|ref|XP_003543092.1| PREDICTED: uncharacterized protein LOC100784604 [Glycine max]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/380 (66%), Positives = 291/380 (76%), Gaps = 25/380 (6%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCCDK+GLKKGPWT EEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIA+RLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGA-QTLVNPELLRLATSLMST---H 176
           IDPVTHSPRLDLLD++SIL++SFY SSQ+NI RL+G  Q +VNPELL+LA+SL ST   H
Sbjct: 121 IDPVTHSPRLDLLDINSILNASFYGSSQINIQRLLGMHQYVVNPELLKLASSLFSTSQQH 180

Query: 177 HHRENQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLE---ACCTLTPPPPPCVSHSNDQ 233
           +H  +    QK       + Q Q  V P   Q Q P++   AC T+     PC S    Q
Sbjct: 181 NHDPDDMCAQKGQQNQLCDPQIQNHV-PHFVQYQDPIQEVPACSTMF--STPCFSMPLTQ 237

Query: 234 AQLMN-SNVEQFPTN-FTNFSNQNCQQSEWQSNGMP-SNLTEDYVP---IPPSYSYYGSD 287
            QL+  +NV+Q+ ++ FT+FS Q  Q S+W  +G+  S LT+DY+P      +Y    S 
Sbjct: 238 PQLVEPNNVDQYTSSTFTDFSYQ--QLSDWHKDGIALSTLTDDYMPQLSSYNNYYSSNSH 295

Query: 288 QTVMDPS-SETSNFHSNNSN-QSFNFASVLSTPSSGSTPLNSNSTYI---STEDERES-- 340
           Q +M P  SE S FHSNNSN Q+F+FASVLSTPSS  TPLNSNST I   +TEDER+   
Sbjct: 296 QNLMYPQVSEPSTFHSNNSNHQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSY 355

Query: 341 NCSNMLKFEIPDILDVNEFM 360
           + SNMLKFEIPDILDVNEFM
Sbjct: 356 DSSNMLKFEIPDILDVNEFM 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114101|ref|XP_002316667.1| predicted protein [Populus trichocarpa] gi|222859732|gb|EEE97279.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/382 (65%), Positives = 291/382 (76%), Gaps = 30/382 (7%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCC+K GLKKGPWTP+EDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRAPCCEKKGLKKGPWTPDEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLH ILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHGILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRE 180
           IDPVTHSPRLDLLDLSSIL+S  Y  S+MN+SR++G Q L +PELLRLATSL+S+     
Sbjct: 121 IDPVTHSPRLDLLDLSSILNSPLY-DSRMNMSRVLGVQPLGDPELLRLATSLLSSQ---- 175

Query: 181 NQNQIQKFIYQN-FQEN----------QYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSH 229
            ++Q Q F  QN  QEN          Q+Q ++   ++Q Q P +   T T         
Sbjct: 176 -RDQTQDFAIQNGHQENHLSSPQVHQSQHQSIIH-QANQFQTPGQEMPTCTTLTTTPCVT 233

Query: 230 SNDQAQLMNSNVEQFP-TNFTNFSNQNCQQS---EWQSNGMPSNLTEDYVPIPPSYSYYG 285
            +++AQ M+ NV+Q+  +  T+FS+ N Q S   +WQSN M SNL++DY  +P   SY  
Sbjct: 234 FSNEAQQMDPNVDQYQLSTITSFSSPNSQLSTHDQWQSNRMGSNLSQDYY-LPAVSSYNS 292

Query: 286 SDQ----TVMDPSSETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI---STEDER 338
           +D      ++DPSSE S F SNNSNQ+F FASVLSTPSS   PLNSNSTYI   STEDER
Sbjct: 293 ADNCHGTDLVDPSSEASTFISNNSNQTFGFASVLSTPSSSPAPLNSNSTYINCSSTEDER 352

Query: 339 ESNCSNMLKFEIPDILDVNEFM 360
           +S CSN+LKFEIPDILDV+ FM
Sbjct: 353 DSYCSNILKFEIPDILDVSNFM 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745651|emb|CBI40862.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/367 (67%), Positives = 275/367 (74%), Gaps = 65/367 (17%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR+PCCDK+GLKKGPWTPEEDQKLIDYIQK+GYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKNGLKKGPWTPEEDQKLIDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRE 180
           IDPVTHSPRLDLLDLSSILS+S Y+SS MN+SR +G Q LVNPELLRLATSL+S      
Sbjct: 121 IDPVTHSPRLDLLDLSSILSTSLYNSSHMNVSRFLGMQPLVNPELLRLATSLISF----S 176

Query: 181 NQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSN 240
           N++Q+                                                   M  N
Sbjct: 177 NESQV---------------------------------------------------MEPN 185

Query: 241 VEQFPTNFTNFSNQNCQQ-SEWQSNGMPSNLTED-YVPIPPSYSYYGSDQTVMDPSSETS 298
            EQFP+N T+FS+QN Q  S+WQSNG+PS+L+E+ YVP P S  YYGS+QT+MDPSS+ S
Sbjct: 186 AEQFPSNITDFSSQNSQLISDWQSNGLPSDLSEEYYVPHPSSVGYYGSEQTIMDPSSDNS 245

Query: 299 NFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI--STEDERE-SNCSNM-LKFEIPD-I 353
            F SNN   +F+FASVLSTPSS  TPLNSNSTYI  STEDERE S  SNM LKFE PD +
Sbjct: 246 VFQSNN---NFSFASVLSTPSSSPTPLNSNSTYINSSTEDEREISYGSNMYLKFETPDHL 302

Query: 354 LDVNEFM 360
           LDVN  M
Sbjct: 303 LDVNYEM 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501336|gb|AFK38734.1| unknown [Lotus japonicus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 242/369 (65%), Positives = 271/369 (73%), Gaps = 34/369 (9%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR PCC+K+GLKKGPWT EE+QKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRTPCCEKNGLKKGPWTSEENQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF FEEEETIIQLHSILGNKWSAIA+RLPGRTDNEIKNYWNTHIRKRLL+MG
Sbjct: 61  LRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLKMG 120

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRE 180
           IDPVTH+PRLDLLDLSSIL SS   SSQ+N+ RL+  Q  +NPELL LA+SL  T    +
Sbjct: 121 IDPVTHAPRLDLLDLSSILYSSLSGSSQINLQRLLSMQ--MNPELLNLASSLDMTSVVGQ 178

Query: 181 NQNQIQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSN 240
           N             + Q Q L     H  Q P++ C T +     CVS            
Sbjct: 179 NGQHNNNNNQFYNPQIQSQIL-----HFDQDPVQDCNTFS---TSCVSL---------PQ 221

Query: 241 VEQFPTNFTNFS-NQNCQQSE-WQSNGMPSNLTEDYVPIPPSYS-YYGSD-QTVM-DPSS 295
           ++ +P+NFT+F   QN QQS+ W SN +       YVP  PSY  YYGSD Q  M  P S
Sbjct: 222 LDSYPSNFTDFGYQQNFQQSDNWDSNEIA------YVPQLPSYDHYYGSDNQNFMCPPLS 275

Query: 296 ETSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI---STEDERES-NCSNMLKFEIP 351
           E S FHSNNSNQ+F+FASVLSTPSS  TPLNSNSTY+   +TEDERE  + S+MLKFEIP
Sbjct: 276 EASTFHSNNSNQNFSFASVLSTPSSSPTPLNSNSTYVNGSNTEDEREGYDSSHMLKFEIP 335

Query: 352 DILDVNEFM 360
           DILDVNEFM
Sbjct: 336 DILDVNEFM 344

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567435|ref|XP_002524697.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223536058|gb|EEF37716.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/382 (64%), Positives = 276/382 (72%), Gaps = 62/382 (16%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR PCCDK+GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1   MGRTPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPDIKRGRF+FEEEETIIQLHSILGNK                         KRLLRMG
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSILGNK-------------------------KRLLRMG 95

Query: 121 IDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRE 180
           IDPVTHSPRLDLLDLSSIL SS Y+SSQMN+SRL+G Q LVNPELLRLATSL+S+HH RE
Sbjct: 96  IDPVTHSPRLDLLDLSSILGSSLYNSSQMNMSRLLGVQPLVNPELLRLATSLISSHHQRE 155

Query: 181 NQNQIQKFI-YQNFQE---------NQYQQ-LVQPDSHQLQIPLEACCTLTPPPPPCVSH 229
           N    Q F+ +QN QE         NQY   LVQ    Q ++P     T      P VS 
Sbjct: 156 ND---QSFVSHQNGQENHLCHLQVQNQYNHPLVQAQPFQ-EMPTTTTST------PFVSF 205

Query: 230 SNDQAQLMNSNVEQFPTNFTNFSNQNCQ-QSEW-QSNGMP-SNLTEDYVPIPPSYSYYGS 286
           S D+ QLMN NVEQ+P     F++QN Q   EW   NG   S+LTEDY+ +    +Y+GS
Sbjct: 206 S-DETQLMNPNVEQYP---ARFADQNSQLNQEWPNDNGFATSSLTEDYIALQNCNNYFGS 261

Query: 287 -DQT-VMDPSSE--TSNFHSNNSNQSFNFASVLSTPSSGSTPLNSNSTYI----STEDER 338
            DQT ++DPSS+  TS F SNNSNQ+F+FASVLSTPSS  TPLNSNSTYI    STEDER
Sbjct: 262 HDQTAIIDPSSDTTTSTFISNNSNQNFSFASVLSTPSSSPTPLNSNSTYINGGSSTEDER 321

Query: 339 ESNCSNMLKFEIPDILDVNEFM 360
           ES  S++LK+EIP+ILDV+ FM
Sbjct: 322 ES-YSSILKYEIPEILDVSNFM 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.922	0.948	0.519	1.6e-86
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.577	0.641	0.657	2.2e-73
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.569	0.726	0.632	1.2e-71
TAIR|locus:2023951	365	MYB93 "myb domain protein 93"	0.358	0.353	0.798	1.3e-65
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.552	0.592	0.580	1.6e-61
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.752	0.844	0.462	2.1e-61
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.513	0.579	0.6	2.3e-60
TAIR|locus:2145402	334	MYB92 "myb domain protein 92"	0.358	0.386	0.736	3.3e-59
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.569	0.628	0.553	3.5e-59
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.491	0.456	0.583	5.1e-58

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 196/377 (51%), Positives = 232/377 (61%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             M R+PCC+K+GLKKGPWT EEDQKL+DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRGRF+FEEEETIIQLHS LGNKWSAIAARLPGRTDNEIKN+WNTHIRK+LLRMG
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMG 120

Query:   121 IDPVTHSPRXXXXXXXXXXXXXX--XXXXQMNISRLV--------GAQTLVNPELLRLAT 170
             IDPVTHSPR                     MN+SRL+            LVNPE+L+LAT
Sbjct:   121 IDPVTHSPRLDLLDISSILASSLYNSSSHHMNMSRLMMDTNRRHHQQHPLVNPEILKLAT 180

Query:   171 SLMSTHHHRENQNQIQKFIYQNFQENQYQQLV--QPDSHQLQIPLEACCTLTXXXXXCVS 228
             SL S       QNQ Q  +  +    Q +Q V  Q   +Q Q       T+T      + 
Sbjct:   181 SLFS-------QNQNQNLVVDHDSRTQEKQTVYSQTGVNQYQTNQYFENTITQELQSSMP 233

Query:   229 HSNDQAQLMNSNVEQFPTNFTNFSNQNCQQSEWQSNGMPSNLTEDYVPIPPSYSYYGSDQ 288
                ++A+  N N++    +F  F  QN   +   S      + + Y    PS++ Y S  
Sbjct:   234 PFPNEARQFN-NMDH---HFNGFGEQNLVSTSTTS------VQDCY---NPSFNDYSSSN 280

Query:   289 TVMDPSSETXXXXXXXXXXXXXXXXVLSTPSSGSTPLNSNSTYI-----STEDERESNCS 343
              V+DPS                   VL+TPSS  +P   NS+YI     STEDE ES CS
Sbjct:   281 FVLDPS--------YSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCS 332

Query:   344 NMLKFEIPDILDVNEFM 360
             N++KF+IPD LDVN F+
Sbjct:   333 NLMKFDIPDFLDVNGFI 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 148/225 (65%), Positives = 167/225 (74%)

Query:     1 MGRAPCCDK-SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTN 59
             MGR+PCC+K +GLKKGPWTPEEDQKLIDYI  HGYGNWRTLPKNAGLQRCGKSCRLRWTN
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query:    60 YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRM 119
             YLRPDIKRGRF+FEEEETIIQLHSI+GNKWSAIAARLPGRTDNEIKNYWNTHIRKRLL+M
Sbjct:    61 YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKM 120

Query:   120 GIDPVTHSPRXXXXXXXXXXXXXXXXXXQ---------MNISRLVGA----QTLVNPELL 166
             GIDPVTH+PR                            MN+SRL+ +    Q LVNPE+L
Sbjct:   121 GIDPVTHTPRLDLLDISSILSSSIYNSSHHHHHHHQQHMNMSRLMMSDGNHQPLVNPEIL 180

Query:   167 RLATSLMSTHHHRENQNQIQKFIYQNFQENQYQQ-LVQPDSHQLQ 210
             +LATSL S  +H  N ++    + Q  + NQYQ     P + +LQ
Sbjct:   181 KLATSLFSNQNHPNNTHE-NNTVNQT-EVNQYQTGYNMPGNEELQ 223

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 136/215 (63%), Positives = 158/215 (73%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+PCCDK+G+KKGPWT EEDQKLIDYI+ HG GNWRTLPKNAGL RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRGRF+FEEEETIIQLHS++GNKWSAIAARLPGRTDNEIKN+WNTHIRKRL+R G
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSG 120

Query:   121 IDPVTHSPRXXXXXXXXXXXXXXXXXXQMNISRLVG-AQTLVNPELLRLATSLMSTHHHR 179
             IDPVTHSPR                  Q N S +   A +L+NP++LRLA+ L+      
Sbjct:   121 IDPVTHSPRLDLLDLSSLLSALFN---QPNFSAVATHASSLLNPDVLRLASLLLPL---- 173

Query:   180 ENQNQIQKF-IYQNFQE-NQYQQLVQPDSHQLQIP 212
             +N N +    + QN Q  N   +  QP +    +P
Sbjct:   174 QNPNPVYPSNLDQNLQTPNTSSESSQPQAETSTVP 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 1.3e-65, Sum P(3) = 1.3e-65
 Identities = 103/129 (79%), Positives = 118/129 (91%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+PCCD++GLKKGPWTPEEDQKLIDYI KHG+G+WR LPK A L RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRG+F+ EEE+TI+ LHSILGNKWSAIA  L GRTDNEIKN+WNTH++K+L++MG
Sbjct:    61 LRPDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPVTHSPR 129
             IDPVTH PR
Sbjct:   121 IDPVTHQPR 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 119/205 (58%), Positives = 143/205 (69%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+PCCD++GLKKGPWT EED KLID+IQKHG+G+WR LPK AGL RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRG F  EEE+TII LHS+LGNKWS+IA  LPGRTDNEIKNYWNTH+RK+LL+MG
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   121 IDPVTHSPRXXXXXXXXXX---XXXXXXXXQMNISRLV--GAQTLVNPELLRLATSLMST 175
             IDPVTH PR                      +N+++ V   A TL   +LL     ++ST
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLIAAANFNSLLNLNQNVQLDATTLAKAQLLHTMIQVLST 180

Query:   176 HHHRENQNQIQKFIYQNFQENQYQQ 200
             +++  N +       QN   N + Q
Sbjct:   181 NNNTTNPS-FSSSTMQNSNTNLFGQ 204

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 137/296 (46%), Positives = 177/296 (59%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+PCCD+SGLKKGPWTPEEDQKLI++I+KHG+G+WR LPK AGL RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRG F  EEE+TII LHS+LGNKWS+IA  LPGRTDNEIKNYWNTHIRK+L++MG
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   121 IDPVTHSPRXXXXXXXXXXXXXXXXXXQMNISRL-----VGAQTLVNPELLRLATSLMST 175
             IDPVTH PR                    N+  L     + A ++   +LL     ++S 
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLNLNQNIQLDATSVAKAQLLHSMIQVLSN 180

Query:   176 H--------HHRENQNQIQKFIYQNFQ--ENQYQQLVQPDSHQLQIPLEACCTLTXXXXX 225
             +        HH  N    Q    +N    EN Y Q  Q  SH    PL++  +       
Sbjct:   181 NNTSSSFDIHHTTNNLFGQSSFLENLPNIENPYDQ-TQGLSHIDDQPLDSFSS----PIR 235

Query:   226 CVSHSNDQ---AQLMNSNVEQFPTNFTNFSNQNCQQ-SEWQSN-GMPSNLTEDYVP 276
              V++ +DQ     L++++ ++         N+   + ++  SN    S  T+D+ P
Sbjct:   236 VVAYQHDQNFIPPLISTSPDESKETQMMVKNKEIMKYNDHTSNPSSTSTFTQDHQP 291

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 114/190 (60%), Positives = 136/190 (71%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MG++   ++S +KKGPWTPEED+KL+ YIQ HG G WRTLPKNAGL+RCGKSCRLRWTNY
Sbjct:     1 MGKSSSSEESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRG F+ +EEETIIQLH +LGNKWSAIA  LPGRTDNEIKNYWNTHI+K+LLRMG
Sbjct:    61 LRPDIKRGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKKLLRMG 120

Query:   121 IDPVTHSPRXXXXXXXXXXXXXXXXXXQMNISRLVGAQTL-VNPELLR-LATSL--MSTH 176
             IDPVTH PR                     ++      T  +NP++L  L  SL  + T 
Sbjct:   121 IDPVTHCPRINLLQLSSFLTSSLFKSMSQPMNTPFDLTTSNINPDILNHLTASLNNVQTE 180

Query:   177 HHRENQNQIQ 186
              ++ NQ Q+Q
Sbjct:   181 SYQPNQ-QLQ 189

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2145402 MYB92 "myb domain protein 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 95/129 (73%), Positives = 116/129 (89%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+P  D SGLKKGPWTP+ED+KL++Y+QKHG+ +WR LPK AGL RCGKSCRLRWTNY
Sbjct:     1 MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRGRF+ +EE+TI+ LHS+LGNKWS IA +LPGRTDNEIKN+WNTH++K+L++MG
Sbjct:    61 LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPVTHSPR 129
              DP+TH PR
Sbjct:   121 FDPMTHRPR 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 119/215 (55%), Positives = 142/215 (66%)

Query:     1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
             MGR+PCCDK GLKKGPWTPEEDQKL+ YI++HG+G+WR+LP+ AGL RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
             LRPDIKRG+F  +EE+TIIQLH++LGN+WSAIA  LP RTDNEIKNYWNTH++KRL++MG
Sbjct:    61 LRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMG 120

Query:   121 IDPVTHSPRXXXXXXX---XXXXXXXXXXXQMNISRLVGAQTLVNP-ELLRLA-----TS 171
             IDPVTH P+                     Q   +RL     L    +LL L      TS
Sbjct:   121 IDPVTHKPKNETPLSSLGLSKNAAILSHTAQWESARLEAEARLARESKLLHLQHYQTKTS 180

Query:   172 LMSTHHHRENQNQIQKFIYQNFQENQYQQLVQPDS 206
                 HHH      +         E+Q QQL  P S
Sbjct:   181 SQPHHHHGFTHKSLLPNWTTKPHEDQ-QQLESPTS 214

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 105/180 (58%), Positives = 132/180 (73%)

Query:     4 APCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63
             +PCCDK+GLKKGPWTPEEDQKL+ YI++HG+G+WR+LP+ AGLQRCGKSCRLRWTNYLRP
Sbjct:    47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRP 106

Query:    64 DIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDP 123
             DIKRG+F  +EE+TIIQLH++LGN+WSAIA  LP RTDNEIKNYWNTH++KRL++MGIDP
Sbjct:   107 DIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDP 166

Query:   124 VTHSPRXXXXXXXXXXXXXXXXXXQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQN 183
             VTH  +                   M  ++   A+      L R  + L+   H++ N N
Sbjct:   167 VTHKHKNETLSSSTGQSKNAATLSHM--AQWESARLEAEARLAR-ESKLLHLQHYQNNNN 223

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013087001 SubName- Full=Chromosome undetermined scaffold_434, whole genome shotgun sequence; (362 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-62
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-58
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-17
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	6e-06
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-05

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  198 bits (504), Expect = 6e-62
 Identities = 84/124 (67%), Positives = 101/124 (81%)

Query: 5   PCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
           PCC K G+K+GPWT EED+ L+ +I+K G G WR+LPK AGL RCGKSCRLRW NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPV 124
           +KRG    +EE+ I++LH +LGN+WS IA R+PGRTDNEIKNYWNTH+RK+LLR GIDP 
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ 135

Query: 125 THSP 128
           TH P
Sbjct: 136 THKP 139

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  195 bits (498), Expect = 1e-58
 Identities = 83/128 (64%), Positives = 105/128 (82%)

Query: 1   MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           MGR  CC K  L+KG W+PEED+KL+ +I K+G+G W ++PK AGLQRCGKSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120
           LRPD+KRG F+ +EE  II+LH++LGN+WS IAA+LPGRTDNEIKN WN+ ++K+L + G
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPVTHSP 128
           IDP TH P
Sbjct: 121 IDPNTHKP 128

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 73.7 bits (182), Expect = 4e-17
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
          +GPWTPEED+ LI+ ++KHG GNW  + K+    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
            K G W   ED+ L   ++K G  NW  +         GK    RW N+L P +K+  ++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVT 125
            EE+E +I L   LG +WS IA     RT  +    +   +             
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQR 130

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.6 bits (161), Expect = 4e-14
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 67  RGRFAFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
           RG +  EE+E +I+     GN  WS IA  LPGRTDN+ KN WN ++
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63
          KG WT EED+ LI+ ++K+G  NW  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
          PWT EED+ L++ ++K+G  NW  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 67  RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRK 114
           +G +  EE+E +I+L    G N W  IA  LPGRT  + +  W   ++ 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 17 WTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEE 76
          WT EED+KL+  ++K+G  +W+ + +   L R   +CR RW   LRP   RG   + +EE
Sbjct: 1  WTEEEDEKLLKLVEKYGN-DWKQIAEE--LGRTPSACRDRWRRKLRPKRSRG--PWTKEE 55

Query: 77 TI 78
            
Sbjct: 56 DQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 73  EEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHI 112
           EE+E +++     G N W  IA  LPGRT  + +  W   +
Sbjct: 5   EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 16 PWTPEEDQKLIDYIQKHGYGNWR 38
           WT EED+ L++ ++K+G GNW 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 73  EEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
           EE+E +++L    GN W  IA  L GRT +  ++ W   +R + 
Sbjct: 4   EEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.58
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.51
PLN03212	249	Transcription repressor MYB5; Provisional	99.47
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.45
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.45
PLN03091	459	hypothetical protein; Provisional	99.37
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.3
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.01
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.94
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.91
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.78
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.28
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.27
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.52
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.51
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.33
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.32
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.14
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.13
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.71
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.7
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.69
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.41
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.37
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.25
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.92
PRK13923	170	putative spore coat protein regulator protein YlbO	95.89
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.86
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.78
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.7
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.38
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.3
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.95
PRK13923	170	putative spore coat protein regulator protein YlbO	93.13
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.02
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	92.96
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.07
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.4
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	88.67
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.03
KOG1194	534	consensus Predicted DNA-binding protein, contains	81.83

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=311.46  Aligned_cols=136  Identities=61%  Similarity=1.138  Sum_probs=130.3

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHH
Q 018154            1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQ   80 (360)
Q Consensus         1 mgR~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Lle   80 (360)
                      |||+|||+|.+++||+||+|||++|+++|.+||..+|..||+.++++|+++|||+||.++|+|.+++++||.|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999779999999999999999999999999999999999


Q ss_pred             HHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhc
Q 018154           81 LHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLS  136 (360)
Q Consensus        81 lv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~s  136 (360)
                      +|++||++|++||+.|+|||+++||+||+.++++++++.+++|.++++....-+..
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~  136 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGE  136 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Confidence            99999999999999999999999999999999999999999999998876654433

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=9.1e-37  Score=287.12  Aligned_cols=127  Identities=66%  Similarity=1.302  Sum_probs=123.4

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHH
Q 018154            3 RAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLH   82 (360)
Q Consensus         3 R~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv   82 (360)
                      |+|||+|+++++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||.|||++|+++|
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999977999999999999999999999999999999999999


Q ss_pred             HHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcc
Q 018154           83 SILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPR  129 (360)
Q Consensus        83 ~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~  129 (360)
                      ..||++|+.||+.|||||+++||+||+.++++++.+.++.|.++++.
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~  140 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL  140 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999998773

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=7.8e-35  Score=274.04  Aligned_cols=121  Identities=66%  Similarity=1.159  Sum_probs=113.9

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCc
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNK   88 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~k   88 (360)
                      |+.+.||+||+|||++|+++|++||+++|..||+.+|++|++++||+||.+||+|++++|.||+|||.+|+++|.++|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcc
Q 018154           89 WSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPR  129 (360)
Q Consensus        89 Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~  129 (360)
                      |+.||++|||||+++||++|+..+++++.+.++++.+..+.
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~~  124 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRPS  124 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccccc
Confidence            99999999999999999999999999999988777665443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=2.9e-19  Score=185.31  Aligned_cols=111  Identities=25%  Similarity=0.478  Sum_probs=103.2

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHH
Q 018154            1 MGRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQ   80 (360)
Q Consensus         1 mgR~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Lle   80 (360)
                      +||+.-...|++++|+||++||.+|+.+|.+||..+|.+|-..+| +|+..|||+||.++|....|++.|+..||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            589999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           81 LHSILG-NKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        81 lv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      +|.+|| ++|.+||..||.||.+|.+.|=...+
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence            999999 89999999999999965544433333

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=3.2e-18  Score=177.66  Aligned_cols=146  Identities=20%  Similarity=0.361  Sum_probs=118.1

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------------------------------
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------------------------------   55 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------------------------------   55 (360)
                      ...|+++|..|+.|||++|..+...+|..+|.+||..+|.+|+..||..                               
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            4578888888888888888888888888888888888876677777765                               


Q ss_pred             -----------------------ccccccCCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHH
Q 018154           56 -----------------------RWTNYLRPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        56 -----------------------RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                                             ||...|+|.+++|+||.+||.+|+.+|.+|| ..|.+|...+|||++.|||.||.+.
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence                                   9999999999999999999999999999999 5699999999999999999999999


Q ss_pred             hhHHHhhCCCCCCCcCcccchhhhccccCCCCCCCchhhhhhccCCCc
Q 018154          112 IRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYSSSQMNISRLVGAQT  159 (360)
Q Consensus       112 Lkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~~sS~~n~s~l~~~~~  159 (360)
                      |..+.++..|...++..   |+.+-..+|-    +...++..+++.+.
T Consensus       406 L~~s~K~~rW~l~edeq---L~~~V~~YG~----g~WakcA~~Lp~~t  446 (939)
T KOG0049|consen  406 LNRSAKVERWTLVEDEQ---LLYAVKVYGK----GNWAKCAMLLPKKT  446 (939)
T ss_pred             HHHhhccCceeecchHH---HHHHHHHHcc----chHHHHHHHccccc
Confidence            99998885555555444   4444444433    34677777776543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.58  E-value=5.1e-16  Score=116.28  Aligned_cols=60  Identities=42%  Similarity=0.924  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHH
Q 018154           17 WTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETI   78 (360)
Q Consensus        17 WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~L   78 (360)
                      ||+|||++|+++|.+|| .+|..||+.|| .|++.+|+.||.++|+|.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 79999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=5.8e-15  Score=152.41  Aligned_cols=108  Identities=29%  Similarity=0.502  Sum_probs=102.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCc
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNK   88 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~k   88 (360)
                      ...++.|.|+..||+.|..+|+++|+.+|.+||+.+. -|++++|+.||.++++|.+++..|+.|||+.|+.+...+|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3456789999999999999999999999999999998 699999999999999999999999999999999999999999


Q ss_pred             chhhcccCCCCCHHHHHHHHHHHhhHHHh
Q 018154           89 WSAIAARLPGRTDNEIKNYWNTHIRKRLL  117 (360)
Q Consensus        89 Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~  117 (360)
                      |+.||..++||+..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999977665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=3.7e-15  Score=152.06  Aligned_cols=105  Identities=26%  Similarity=0.568  Sum_probs=100.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchh
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSA   91 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~   91 (360)
                      ++.|.|+.-||+.|..+|.+||.+.|++|++.+. .++++||+.||..+|+|.+++..|+.|||++|+.+.+.+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5789999999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154           92 IAARLPGRTDNEIKNYWNTHIRKRLLR  118 (360)
Q Consensus        92 IA~~LpGRT~~qcKnRW~~lLkk~l~k  118 (360)
                      ||..| ||+++||-.||.+++......
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999999765544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.47  E-value=1.6e-14  Score=136.86  Aligned_cols=91  Identities=20%  Similarity=0.406  Sum_probs=78.8

Q ss_pred             cCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccC-CCCCHHHHHHHHHHHhhHHHhhCCC
Q 018154           44 AGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARL-PGRTDNEIKNYWNTHIRKRLLRMGI  121 (360)
Q Consensus        44 l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~L-pGRT~~qcKnRW~~lLkk~l~k~g~  121 (360)
                      ++ +|++.-|-       ++.+++++||+|||++|+++|++|| .+|..||+.+ ++|+++|||.||.++|++.+++   
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k---   78 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR---   78 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc---
Confidence            44 55555443       4578999999999999999999999 6899999988 6999999999999999999998   


Q ss_pred             CCCCcCcccchhhhccccCCCCCC
Q 018154          122 DPVTHSPRLDLLDLSSILSSSFYS  145 (360)
Q Consensus       122 ~p~t~~~~~~Ll~~ssil~Ss~~~  145 (360)
                      ++|+.+++..|+.+...+|+.|..
T Consensus        79 gpWT~EED~lLlel~~~~GnKWs~  102 (249)
T PLN03212         79 GGITSDEEDLILRLHRLLGNRWSL  102 (249)
T ss_pred             CCCChHHHHHHHHHHHhccccHHH
Confidence            677777888888999999998854

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.45  E-value=3.8e-14  Score=133.85  Aligned_cols=89  Identities=20%  Similarity=0.341  Sum_probs=76.4

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhcccc
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP-GRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSIL  139 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp-GRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil  139 (360)
                      ++.+.+|+||.|||++|+++|++|| ++|..||+.++ +|++++||.||.++|++.+++   ..++.+++..++.++.++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikr---g~fT~eEe~~Ii~lH~~~   80 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKR---GNFSDEEEDLIIKLHALL   80 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccC---CCCCHHHHHHHHHHHHHH
Confidence            3445689999999999999999999 77999999999 999999999999999999999   556666777888999999


Q ss_pred             CCCCCCCchhhhhhccCC
Q 018154          140 SSSFYSSSQMNISRLVGA  157 (360)
Q Consensus       140 ~Ss~~~sS~~n~s~l~~~  157 (360)
                      |+.|.    .-...|+|.
T Consensus        81 GNrWs----~IA~~LPGR   94 (238)
T KOG0048|consen   81 GNRWS----LIAGRLPGR   94 (238)
T ss_pred             CcHHH----HHHhhCCCc
Confidence            99983    444556665

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.45  E-value=1.1e-13  Score=144.50  Aligned_cols=104  Identities=28%  Similarity=0.628  Sum_probs=94.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCC--ccCCCChHHHHHHHHHHH-------
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDI--KRGRFAFEEEETIIQLHS-------   83 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~l--kkg~WT~EEDe~Llelv~-------   83 (360)
                      .+|+||+||++.|..+|.++| +.|..|++.|+  |.+..||+||+++....-  +++.||.||++.|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999 99999999997  999999999999999884  899999999999999995       


Q ss_pred             Hh-------------------CCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhC
Q 018154           84 IL-------------------GNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRM  119 (360)
Q Consensus        84 ~~-------------------G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~  119 (360)
                      .+                   +-.|+.|+..+..|+.-+||-+|+.++...+...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            23                   1249999999999999999999999997766553

>PLN03091 hypothetical protein; Provisional

Probab=99.37  E-value=2.4e-13  Score=137.44  Aligned_cols=81  Identities=17%  Similarity=0.388  Sum_probs=74.1

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcchhhcccC-CCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccC
Q 018154           63 PDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARL-PGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILS  140 (360)
Q Consensus        63 p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~L-pGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~  140 (360)
                      ..+++++||+|||++|+++|.+|| .+|..||+.+ +||+++|||.||.++|++.+++   .+|+.+++..|+.+...+|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkK---gpWT~EED~lLLeL~k~~G   86 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR---GTFSQQEENLIIELHAVLG   86 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccC---CCCCHHHHHHHHHHHHHhC
Confidence            568899999999999999999999 6899999988 4999999999999999999988   6888888999999999999


Q ss_pred             CCCCCC
Q 018154          141 SSFYSS  146 (360)
Q Consensus       141 Ss~~~s  146 (360)
                      ..|...
T Consensus        87 nKWskI   92 (459)
T PLN03091         87 NRWSQI   92 (459)
T ss_pred             cchHHH
Confidence            998554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=1.5e-12  Score=94.09  Aligned_cols=46  Identities=30%  Similarity=0.668  Sum_probs=41.8

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc-chhhcccCC-CCCHHHHHHHHHHHh
Q 018154           67 RGRFAFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTHI  112 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~k-Ws~IA~~Lp-GRT~~qcKnRW~~lL  112 (360)
                      +++||.|||++|+++|.+||.. |..||..|| |||..||+.||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999977 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.30  E-value=1.2e-12  Score=98.07  Aligned_cols=51  Identities=33%  Similarity=0.644  Sum_probs=43.8

Q ss_pred             CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCC
Q 018154           70 FAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG  120 (360)
Q Consensus        70 WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g  120 (360)
                      ||.|||++|+++|..||.+|..||.+|+.||+.+|+.||+..|++.+.+..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~   51 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGP   51 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCC
Confidence            999999999999999999999999999669999999999998887766633

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=4.1e-13  Score=96.98  Aligned_cols=48  Identities=44%  Similarity=0.874  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      |++||+|||++|+++|.+||.++|..||..+|.+|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997679999999988999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=6e-11  Score=82.71  Aligned_cols=47  Identities=38%  Similarity=0.800  Sum_probs=44.4

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|+.||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.01  E-value=4.6e-10  Score=77.17  Aligned_cols=44  Identities=32%  Similarity=0.675  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           69 RFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      +||.|||.+|+.++..|| .+|..||..+++|+..+|+.||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.94  E-value=2.3e-10  Score=79.69  Aligned_cols=48  Identities=44%  Similarity=0.899  Sum_probs=45.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      +++||++||++|+.++..+|..+|..||+.++ +|++.+|+.||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999889999999998 9999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.91  E-value=5e-10  Score=117.51  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=93.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHh----CCC-------------------CceecccccCCCCccccccc---ccccccCCCCc
Q 018154           13 KKGPWTPEEDQKLIDYIQKH----GYG-------------------NWRTLPKNAGLQRCGKSCRL---RWTNYLRPDIK   66 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~----G~~-------------------nW~~IAk~l~~~Rt~kqCR~---RW~n~L~p~lk   66 (360)
                      +.+.|+++||+.|...|..|    |-.                   =|..|.+.|| -|+.+.+..   |-.+.+.+  +
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--~  383 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--K  383 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--c
Confidence            34899999999999999876    110                   1678888898 599998877   43444443  9


Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhc
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLS  136 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~s  136 (360)
                      +|.||+||++.|..+|.++|+.|..|+..| ||.+.+|+.||+.+.+..-+ .+-.+|+..+...|+++.
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~-~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK-RNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc-cccCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999 99999999999999876642 233555555555555443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.78  E-value=1.7e-09  Score=74.38  Aligned_cols=44  Identities=43%  Similarity=0.885  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154           16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      +||++||++|+.++.++|..+|..||+.++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999889999999998 89999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.28  E-value=3.4e-07  Score=94.60  Aligned_cols=79  Identities=23%  Similarity=0.371  Sum_probs=73.2

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCC
Q 018154           65 IKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSF  143 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~  143 (360)
                      ++.|-|+.-||++|-.+|.+|| +.|++|++.++..+..||+.||+.+|.+.+++   ..|++.++..|+++..+++..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~---tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK---TEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh---hhhhhhHHHHHHHHHHhcCCcc
Confidence            5778999999999999999999 78999999999999999999999999999988   7788899999999999999998


Q ss_pred             CCC
Q 018154          144 YSS  146 (360)
Q Consensus       144 ~~s  146 (360)
                      ...
T Consensus        82 rtI   84 (617)
T KOG0050|consen   82 RTI   84 (617)
T ss_pred             chH
Confidence            543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.27  E-value=5.2e-08  Score=101.39  Aligned_cols=97  Identities=32%  Similarity=0.678  Sum_probs=83.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCC--CCccCCCChHHHHHHHHHHHHhC----
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP--DIKRGRFAFEEEETIIQLHSILG----   86 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p--~lkkg~WT~EEDe~Llelv~~~G----   86 (360)
                      .+|.||+||+..|...+.++| ..|..|.+.++  |-+..||+||+++..+  .+++++|+.||+++|...|...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            468999999999999999999 89999998775  9999999999999998  68889999999999999987432    


Q ss_pred             ----CcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           87 ----NKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        87 ----~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                          -.|..|+.+++.|....|+.++..+.
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                34999999998888877776554443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.52  E-value=3.4e-05  Score=58.49  Aligned_cols=49  Identities=14%  Similarity=0.320  Sum_probs=42.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc---eecccccCCCC-ccccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNW---RTLPKNAGLQR-CGKSCRLRWTNYL   61 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW---~~IAk~l~~~R-t~kqCR~RW~n~L   61 (360)
                      ++-.||+||..+++++|..+|.++|   ..|++.|+..| +..+|+.+...|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999997799   99999887667 9999998877653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.51  E-value=0.00011  Score=75.00  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=44.3

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           65 IKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      +-...||.+|+.+|++++..|| |+|..||.+++.|+..+||.+|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            4456899999999999999999 99999999999999999999998775

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.33  E-value=0.00041  Score=52.61  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-cc---hhhcccCC-CC-CHHHHHHHHHHHh
Q 018154           67 RGRFAFEEEETIIQLHSILGN-KW---SAIAARLP-GR-TDNEIKNYWNTHI  112 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~-kW---s~IA~~Lp-GR-T~~qcKnRW~~lL  112 (360)
                      +-.||+||..++++++..+|. +|   ..|+..|. .| |..+|+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999995 99   99999874 35 9999999988775

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.32  E-value=5.8e-05  Score=77.08  Aligned_cols=49  Identities=20%  Similarity=0.643  Sum_probs=45.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      +-...||++|+-+|++++..+|-|||..||.++| .|++..|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3457899999999999999999999999999999 999999999998765

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.14  E-value=0.00045  Score=64.60  Aligned_cols=100  Identities=22%  Similarity=0.400  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCceecccccCCC--Cccccccccccccc-CCCC--------------------ccCCCCh
Q 018154           16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ--RCGKSCRLRWTNYL-RPDI--------------------KRGRFAF   72 (360)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~--Rt~kqCR~RW~n~L-~p~l--------------------kkg~WT~   72 (360)
                      +|++++|-+|+.+|....  +-+.|++.+.+.  -|-+.+.+||+..| +|.+                    .+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999865  677777665532  34566778999876 3333                    3468999


Q ss_pred             HHHHHHHHHHHHhC---Ccchhhc----c-cCCCCCHHHHHHHHHHHhhHHHh
Q 018154           73 EEEETIIQLHSILG---NKWSAIA----A-RLPGRTDNEIKNYWNTHIRKRLL  117 (360)
Q Consensus        73 EEDe~Llelv~~~G---~kWs~IA----~-~LpGRT~~qcKnRW~~lLkk~l~  117 (360)
                      +|+++|........   ..+.+|=    . .-++||++++..+|..+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            99999999776654   3465652    2 23789999999999876555543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.13  E-value=0.00044  Score=62.60  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=45.6

Q ss_pred             ccCCCChHHHHHHHHHHHHh---CC----cchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154           66 KRGRFAFEEEETIIQLHSIL---GN----KWSAIAARLPGRTDNEIKNYWNTHIRKRLLR  118 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~---G~----kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k  118 (360)
                      +...||.|||.+|.+.|-.|   |+    -...++..| +||+.+|.=||+..+|+....
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45789999999999999988   42    388899999 999999999999999987654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.71  E-value=0.0016  Score=68.38  Aligned_cols=46  Identities=11%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      -++.||.+|..+|++++..||.+|.+||.++.+||..+|-.|+..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999999999766

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.70  E-value=0.0012  Score=68.17  Aligned_cols=44  Identities=11%  Similarity=0.224  Sum_probs=42.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154           68 GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      ..||.+|..+|++.+..||..|.+||.+++.||..||--|+.++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            47999999999999999999999999999999999999999876

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.69  E-value=0.0012  Score=52.35  Aligned_cols=48  Identities=27%  Similarity=0.461  Sum_probs=34.7

Q ss_pred             CCCChHHHHHHHHHHHH------hC--C------cchhhcccC----CCCCHHHHHHHHHHHhhHH
Q 018154           68 GRFAFEEEETIIQLHSI------LG--N------KWSAIAARL----PGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~------~G--~------kWs~IA~~L----pGRT~~qcKnRW~~lLkk~  115 (360)
                      ..||.+|...||+++..      ++  +      .|..||..|    ..||+.||+.||.++.+.-
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            47999999999999877      21  1      399999887    3599999999999976543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.41  E-value=0.00085  Score=69.33  Aligned_cols=46  Identities=20%  Similarity=0.551  Sum_probs=42.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      ....||.+|..+|+++|.+|| .+|.+||+++| +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            566999999999999999999 89999999999 99999999998764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.37  E-value=0.0038  Score=48.60  Aligned_cols=51  Identities=18%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             cCCCChHHHHHHHHHHHHhC-------Cc--chhhcccCC-CCCHHHHHHHHHHHhhHHHh
Q 018154           67 RGRFAFEEEETIIQLHSILG-------NK--WSAIAARLP-GRTDNEIKNYWNTHIRKRLL  117 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G-------~k--Ws~IA~~Lp-GRT~~qcKnRW~~lLkk~l~  117 (360)
                      +.+||.|||..|+..|..+.       ++  |.+++..-+ .+|-...|+||...|+++..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            35799999999999997653       11  999998877 89999999999999877653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.25  E-value=0.0024  Score=67.19  Aligned_cols=49  Identities=20%  Similarity=0.546  Sum_probs=44.4

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154           10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        10 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      ....++.||.+|+-+|+++|.+|| .+|.+||.+++ +|+..+|..|+.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345678999999999999999999 89999999999 99999999987654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.92  E-value=0.0023  Score=49.80  Aligned_cols=52  Identities=31%  Similarity=0.572  Sum_probs=33.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--ceecccccCCCCcccccccccccccCCCC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGY------GN--WRTLPKNAGLQRCGKSCRLRWTNYLRPDI   65 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~------~n--W~~IAk~l~~~Rt~kqCR~RW~n~L~p~l   65 (360)
                      +.+||.|||+.|+++|.++..      ++  |..+++.-+..++-.+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999976631      12  99999887768899999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.89  E-value=0.0068  Score=55.50  Aligned_cols=52  Identities=15%  Similarity=0.263  Sum_probs=42.8

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCc-------chhhcccCCCCCHHHHHHHHHHHhhHHHh
Q 018154           65 IKRGRFAFEEEETIIQLHSILGNK-------WSAIAARLPGRTDNEIKNYWNTHIRKRLL  117 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G~k-------Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~  117 (360)
                      .+...||.|||.+|.+.|..|+..       ...++..| +||..+|.-||+..+++...
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            356789999999999999998732       56666777 99999999999999886543

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.86  E-value=0.013  Score=45.83  Aligned_cols=49  Identities=29%  Similarity=0.475  Sum_probs=40.1

Q ss_pred             cCCCChHHHHHHHHHHHHhC----C-------------cchhhcccC-----CCCCHHHHHHHHHHHhhHH
Q 018154           67 RGRFAFEEEETIIQLHSILG----N-------------KWSAIAARL-----PGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G----~-------------kWs~IA~~L-----pGRT~~qcKnRW~~lLkk~  115 (360)
                      +..||.+|.++|++++.+|.    +             .|..|+..|     +.|+..++|.+|.++....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             199999776     3599999999999987543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.78  E-value=0.0023  Score=58.05  Aligned_cols=49  Identities=27%  Similarity=0.627  Sum_probs=42.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC--C----CceecccccCCCCcccccccccccccC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGY--G----NWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~--~----nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      .+...||.|||.+|.+.|-+|-.  +    .+..+++.++  ||+..|.-||..+++
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            46789999999999999999831  1    3888988885  999999999999886

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.70  E-value=0.0083  Score=59.83  Aligned_cols=46  Identities=26%  Similarity=0.419  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           68 GRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      ..|+.+|+.+|++...-+| ++|..||.+++.|+...||.+|..+..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4799999999999999999 999999999999999999999987753

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.38  E-value=0.0023  Score=50.78  Aligned_cols=48  Identities=27%  Similarity=0.646  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh------C--CC-----Cceeccccc---CCCCccccccccccccc
Q 018154           14 KGPWTPEEDQKLIDYIQKH------G--YG-----NWRTLPKNA---GLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~------G--~~-----nW~~IAk~l---~~~Rt~kqCR~RW~n~L   61 (360)
                      +..||.+|...|++++...      +  ..     -|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999882      1  01     399999875   56899999999998753

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.30  E-value=0.07  Score=60.73  Aligned_cols=100  Identities=17%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------cccc----------------------------
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------RWTN----------------------------   59 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------RW~n----------------------------   59 (360)
                      +.|+.-|=..++.+..+||..+-..||..+. +++...++.       ||..                            
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588888888999999999888999999887 777766654       1111                            


Q ss_pred             -------------c-c-CCCCccCCCChHHHHHHHHHHHHhC-Ccchhhccc------------CCCCCHHHHHHHHHHH
Q 018154           60 -------------Y-L-RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAAR------------LPGRTDNEIKNYWNTH  111 (360)
Q Consensus        60 -------------~-L-~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~------------LpGRT~~qcKnRW~~l  111 (360)
                                   . + -+..++..||.|||..|+-.+.+|| ++|.+|-..            +..||+..|..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                         0 0 1122344699999999999999999 889998422            3589999999999999


Q ss_pred             hhHH
Q 018154          112 IRKR  115 (360)
Q Consensus       112 Lkk~  115 (360)
                      ++-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.95  E-value=0.012  Score=58.69  Aligned_cols=47  Identities=21%  Similarity=0.546  Sum_probs=44.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      --|+.+|+-+|+++....|-++|..||..+| .|....|+++|.+++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            4699999999999999999999999999999 9999999999988765

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.13  E-value=0.015  Score=53.24  Aligned_cols=49  Identities=22%  Similarity=0.540  Sum_probs=39.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC------ceecccccCCCCcccccccccccccC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGN------WRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~n------W~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      .++..||.|||.+|.+.|-+|+...      ...++..+.  |++..|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            5778999999999999999986322      556666664  999999999977665

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.02  E-value=0.3  Score=50.11  Aligned_cols=86  Identities=19%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             CCceecccccCCCCcccccccccccccCCCC-------------------------ccCCCChHHHHHHHHHHHHhCCcc
Q 018154           35 GNWRTLPKNAGLQRCGKSCRLRWTNYLRPDI-------------------------KRGRFAFEEEETIIQLHSILGNKW   89 (360)
Q Consensus        35 ~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~l-------------------------kkg~WT~EEDe~Llelv~~~G~kW   89 (360)
                      ..|..++=..+ -|...-...||.+.-.+..                         ....||.||-.-|+++++.|--+|
T Consensus        74 ~~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf  152 (445)
T KOG2656|consen   74 RPWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRF  152 (445)
T ss_pred             CCceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeE
Confidence            35777765555 6777777888887733321                         224599999999999999999999


Q ss_pred             hhhccc-----CCC-CCHHHHHHHHHHHhhHHHhhCCC
Q 018154           90 SAIAAR-----LPG-RTDNEIKNYWNTHIRKRLLRMGI  121 (360)
Q Consensus        90 s~IA~~-----LpG-RT~~qcKnRW~~lLkk~l~k~g~  121 (360)
                      -.||..     ++. ||-.++|+||+...++-++...-
T Consensus       153 ~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~  190 (445)
T KOG2656|consen  153 FVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP  190 (445)
T ss_pred             EEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence            999987     555 99999999999998877665443

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=92.96  E-value=0.035  Score=43.36  Aligned_cols=49  Identities=22%  Similarity=0.463  Sum_probs=39.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHh-----CCC-----------Cceeccccc----CCCCccccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKH-----GYG-----------NWRTLPKNA----GLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~-----G~~-----------nW~~IAk~l----~~~Rt~kqCR~RW~n~L   61 (360)
                      ++..||.+|.+.|+++|.+|     |..           -|..|+..+    |..|+..+++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            46789999999999999988     211           299999865    22799999999998754

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.07  E-value=0.3  Score=42.31  Aligned_cols=52  Identities=23%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCC----cchhhcccC------------CCCCHHHHHHHHHHHhhHH
Q 018154           64 DIKRGRFAFEEEETIIQLHSILGN----KWSAIAARL------------PGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        64 ~lkkg~WT~EEDe~Llelv~~~G~----kWs~IA~~L------------pGRT~~qcKnRW~~lLkk~  115 (360)
                      ..++..||++||.-|+-.+.+||-    .|..|...+            ..||+..+..|...+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            456778999999999999999995    798886432            4799999999999998643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.40  E-value=0.24  Score=49.27  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             cCCCChHHHHHHHHHHHHhC----------CcchhhcccC----CCCCHHHHHHHHHHHhhHH
Q 018154           67 RGRFAFEEEETIIQLHSILG----------NKWSAIAARL----PGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G----------~kWs~IA~~L----pGRT~~qcKnRW~~lLkk~  115 (360)
                      ...|+.+|-..||++..+.-          .-|..||+.+    .-||+.+||.||.++.++-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            36899999999999886532          3399999865    2399999999999998654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=88.67  E-value=0.78  Score=36.68  Aligned_cols=45  Identities=29%  Similarity=0.509  Sum_probs=34.6

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cchhhcccCC---C--CCHHHHHHHHHHHhh
Q 018154           69 RFAFEEEETIIQLHSIL---GN----------KWSAIAARLP---G--RTDNEIKNYWNTHIR  113 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~---G~----------kWs~IA~~Lp---G--RT~~qcKnRW~~lLk  113 (360)
                      .||+++++.|++++.+.   |+          .|..|+..|.   |  .+..+|++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999998654   21          2899988772   3  577999999977754

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.03  E-value=0.89  Score=46.69  Aligned_cols=47  Identities=26%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           68 GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      .+|+.+|-++...+..+.|..++-|+..+|.|..+|||.+|.+--++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999766543

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=81.83  E-value=2.1  Score=44.87  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=43.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      -...||.||--++-+++..||..+++|...||.|+-..+..+|+..-+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999998887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-25
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		7e-25
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-24
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-24
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		4e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-17
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		3e-12
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		5e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		7e-09
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-08
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		1e-08
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-08
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		3e-08

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQK+I+ ++K+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I + H +LGN+W+ IA  LPGRTDN +KN+WN+ I++++
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQ++I+++QK+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I Q H  LGN+W+ IA  LPGRTDN +KN+WN+ +R+++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 14  KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL--QRCGKSCRLRWTNYLRPDIKRGRFA 71
           KGP+T  ED  + +Y++++G  NW   P+       R  K CR RW N+L P + +  + 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+ETI + +  LG+KWS IA  +PGRTDN IKN WN+ I KR+
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 10  SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69
              KK  +TPEED+ L   + +HG  +W+ +       R  + CR RW NYL P I    
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64
Query: 70  FAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
           +  EE+  ++Q     G +W+ IA   PGRTD  IKN W T
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 65  IKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
           +K+  +  EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 64  DIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
           ++K+  +  EE+  + Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 14  KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE 73
           K  +T EED KL   + ++G  +W  + +   + R  + CR RW NY+ P ++   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115
           E+  + Q ++  G KW+ I+  L  R+DN I+N W    R R
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+LI  +QK+G   W  + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ++I+ +QK+G   W  + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-75
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-74
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-72
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-37
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	3e-58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	9e-32
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-26
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-24
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-17
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-14
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-11
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	8e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-10
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-10
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	8e-09
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	9e-09
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	5e-08
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-05
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	9e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	3e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  226 bits (578), Expect = 5e-75
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)

Query: 12  LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
           L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P++K+  + 
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  225 bits (576), Expect = 2e-74
 Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 14  KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE 73
           KGP+T  ED  + +Y++++G  NW  +       R  K CR RW N+L P + +  +  E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPR 129
           E+ETI + +  LG+KWS IA  +PGRTDN IKN WN+ I KR+           P 
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD 116

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  220 bits (564), Expect = 1e-72
 Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 1/108 (0%)

Query: 9   KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68
              L KGPWT EEDQ++I+++QK+G   W  + K+    R GK CR RW N+L P++K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 69  RFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
            +  EE+  I Q H  LGN+W+ IA  LPGRTDN +KN+WN+ +R+++
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  202 bits (517), Expect = 1e-65
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 8   DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67
           +    KK  +TPEED+ L   + +HG  +W+ +       R  + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 68  GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHS 127
             +  EE+  ++Q     G +W+ IA   PGRTD  IKN W T   K  +      + H 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 128 PR 129
             
Sbjct: 123 HH 124

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  194 bits (494), Expect = 1e-61
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 11  GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRF 70
            L KGPWT EEDQ++I  +QK+G   W  + K+    R GK CR RW N+L P++K+  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  AFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
             EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R+++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  131 bits (331), Expect = 2e-37
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 11  GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRF 70
            L K  WT EED+KL   ++++G  +W+ +       R    C+ RW   L P++ +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  AFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHIR 113
             EE++ +I+L    G K WS IA  L GR   + +  W+ H+ 
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  183 bits (466), Expect = 3e-58
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 14  KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE 73
           K  +T EED KL   + ++G  +W  + +     R  + CR RW NY+ P ++   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
           E+  + Q ++  G KW+ I+  L  R+DN I+N W    R R 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  112 bits (283), Expect = 9e-32
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+LI  +QK+G   W  + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69
          S  K G W   ED+ L   + K+G   W  +      ++  K C+ RW  +L P IK+  
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 70 FAFEEE 75
          ++    
Sbjct: 64 WSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 92.6 bits (231), Expect = 4e-24
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L K  WT EED+KL   ++++G  +W+ +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK 66
              K  WT EED++L   +++ G  +W+ L  +    R  + C+ RW   L     
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ-RCGKSCRLRWTNYLR 62
          K+  W  EED+ L   ++K+G GNW  +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 8  DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67
            S  KK  W+ EE++KL+   +      WRT+    G  R    C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 65  IKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118
            K+  ++ EEEE ++ L  ++  +W  I A + GRT  +   ++   + K   R
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQR 59

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ-RCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G GNW  + KN     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 56.2 bits (136), Expect = 8e-11
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ-RCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G GNW  + KN     R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRT-LPKNAGLQRCGKSCRLRWTNYLRPDI 65
          K+  W  EED+ L   ++K+G GNW   L       R     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 55.8 bits (134), Expect = 3e-10
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 13  KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ---RCGKSCRLRWTNYLR-----PD 64
            + P++  E + L+  ++K G G WR +   A      R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65  IKRGR-FAFEEEETIIQLHSILGNKWSAIAAR 95
            +RG     E    ++  H     +      +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 13  KKGPWTPEEDQKLIDYIQKHGYGNWRT---LPKNAGLQRCGKSCRLRWTNYLR-----PD 64
            + P+T  E + L++ ++  G G WR            R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IKRGR-FAFEEEETIIQLHSILGNKWSA 91
            +RG     E  + ++   +      S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNA---GLQRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + L++ ++  G G WR +   A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GR-FAFEEEETIIQLHSILGNK 88
          G     +  + ++  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
              WT +E+  L++ +   G+GNW+ +       +  + C   +  Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 52.1 bits (124), Expect = 9e-09
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 13  KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ---RCGKSCRLRWTNYLR-----PD 64
            + P++  E + L++ ++  G G WR +   A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGR-FAFEEEETIIQLHSILGNKWS 90
            +RG     +  + ++  H+    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
          S      W  +E+  LID  +  G GNW  +    G  R  + CR  +   
Sbjct: 5  SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68
            G +TPEE +KL +   KHG  +W T+    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 66  KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
             G++  EE E + +L    GN W+ I A L GR+ + +K+    
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 54  RLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113
                +  R ++    +  EE  T  +     G  WSAIA  +  +T ++ KN++  + +
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-K 61

Query: 114 KRL 116
           KR 
Sbjct: 62  KRQ 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 40/313 (12%), Positives = 97/313 (30%), Gaps = 87/313 (27%)

Query: 27  DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE----------EEE 76
             +   G           G    GK+  +   +       + +  F+            E
Sbjct: 151 KNVLIDGVL---------G---SGKTW-VA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 77  TIIQ----LHSILGNKWSA---IAARLPGRTD---NEIKNYWNTHIRKR-LLRMGIDPVT 125
           T+++    L   +   W++    ++ +  R      E++    +   +  LL +    V 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQ 254

Query: 126 HSPRLDLLDLSS-ILSSSFYSSSQMNISRLVGAQTLVNPELLRLATSLMSTHHHRENQNQ 184
           ++   +  +LS  IL ++ +      ++  + A T  +  L   + +L       E ++ 
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTL----TPDEVKSL 306

Query: 185 IQKFIYQNFQENQYQQLVQPDSHQLQIPLEACCTLTPPPPPCVSHSNDQAQLMNSNVEQF 244
           + K++    Q+               +P E   T     P  +S       ++  ++   
Sbjct: 307 LLKYLDCRPQD---------------LPREVLTTN----PRRLS-------IIAESIRDG 340

Query: 245 PTNFTNFSNQNC-QQSEWQSNGM----PSNLTEDY---------VPIPPS-YSYYGSDQT 289
              + N+ + NC + +    + +    P+   + +           IP    S    D  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 290 VMDPSSETSNFHS 302
             D     +  H 
Sbjct: 401 KSDVMVVVNKLHK 413

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8  DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
           K       WT +E   L++ ++ +   +W  + ++ G  R    C L +   
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Length = 211

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 3   RAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNW 37
             PC  K+      W  E+D  L+  I ++GYG+W
Sbjct: 123 TIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSW 157

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 13  KKGPWTPEEDQKLIDYIQKHGYG-----NWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67
            K  +T EED+ ++D ++K+         +  +         G S R R+  YL   ++ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLE- 64

Query: 68  GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
             + +E ++    +    GN                IK  ++ 
Sbjct: 65  --YVYEVDKFGKLVRDDDGNLIKT------KVLPPSIKRKFSA 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.86
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.7
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.66
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.63
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.62
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.54
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.53
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.5
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.48
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.48
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.47
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.45
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.11
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.4
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.36
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.33
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.33
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.32
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.29
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.25
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.87
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.18
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.18
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.17
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.15
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.15
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.15
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.12
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.83
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.81
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.67
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.63
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.57
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.43
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.4
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.33
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.22
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.17
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.12
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.96
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.92
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.89
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.73
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.62
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.6
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.58
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.73
2crg_A	70	Metastasis associated protein MTA3; transcription	97.33
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.3
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.13
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.06
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.94
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.88
2crg_A	70	Metastasis associated protein MTA3; transcription	96.7
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.69
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.49
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.19
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.76
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.62
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.82
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.27
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.23
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.08
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.89
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.16

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=7.4e-33  Score=228.11  Aligned_cols=105  Identities=49%  Similarity=0.909  Sum_probs=99.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcch
Q 018154           11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWS   90 (360)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs   90 (360)
                      ++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||++|+++|.+||.+|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154           91 AIAARLPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        91 ~IA~~LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      .||..|||||+.+||+||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=4e-32  Score=232.75  Aligned_cols=107  Identities=42%  Similarity=0.729  Sum_probs=103.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIA   93 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA   93 (360)
                      ||+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhHHHhhCCC
Q 018154           94 ARLPGRTDNEIKNYWNTHIRKRLLRMGI  121 (360)
Q Consensus        94 ~~LpGRT~~qcKnRW~~lLkk~l~k~g~  121 (360)
                      ..|||||+.+||+||+.+|++++....+
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999998876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=3.1e-32  Score=232.15  Aligned_cols=113  Identities=45%  Similarity=0.837  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHH
Q 018154            3 RAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLH   82 (360)
Q Consensus         3 R~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv   82 (360)
                      |+--..+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|
T Consensus        16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~   94 (128)
T 1h8a_C           16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH   94 (128)
T ss_dssp             ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence            4444567999999999999999999999999889999999998 999999999999999999999999999999999999


Q ss_pred             HHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154           83 SILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        83 ~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      .+||++|+.||..|||||+.+||+||+.++++++
T Consensus        95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999987653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=2.6e-32  Score=226.50  Aligned_cols=104  Identities=32%  Similarity=0.556  Sum_probs=100.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIA   93 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA   93 (360)
                      ||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154           94 ARLPGRTDNEIKNYWNTHIRKRLLR  118 (360)
Q Consensus        94 ~~LpGRT~~qcKnRW~~lLkk~l~k  118 (360)
                      ..|||||+.+||+||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999876544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=8.8e-32  Score=229.43  Aligned_cols=106  Identities=37%  Similarity=0.664  Sum_probs=101.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN   87 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~   87 (360)
                      .+.+.++|+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||.|||++|+++|.+||.
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            367889999999999999999999995 9999999998 99999999999999999999999999999999999999999


Q ss_pred             cchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154           88 KWSAIAARLPGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        88 kWs~IA~~LpGRT~~qcKnRW~~lLkk~  115 (360)
                      +|+.||..|||||+.+||+||..++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=8.3e-32  Score=237.05  Aligned_cols=130  Identities=26%  Similarity=0.573  Sum_probs=83.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC-cc
Q 018154           11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN-KW   89 (360)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~-kW   89 (360)
                      ++++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            36899999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154           90 SAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY  144 (360)
Q Consensus        90 s~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~  144 (360)
                      ..||..|||||+.+|++||.++|++.+.+   .+|+..++..|+.+...+|..|.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~---~~WT~eEd~~L~~~~~~~g~~W~  133 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK---TSWTEEEDRIIYQAHKRLGNRWA  133 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCC---SCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccc---cCCChHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999988766   67888888888888888887763

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=5.5e-30  Score=225.43  Aligned_cols=109  Identities=47%  Similarity=0.867  Sum_probs=103.6

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhC
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILG   86 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G   86 (360)
                      ..+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|++++|+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus        51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            457899999999999999999999999878999999998 9999999999999999999999999999999999999999


Q ss_pred             CcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154           87 NKWSAIAARLPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        87 ~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      ++|+.||+.|||||+.+||+||+.++++++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999987653

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.86  E-value=2.4e-23  Score=177.17  Aligned_cols=101  Identities=22%  Similarity=0.493  Sum_probs=73.2

Q ss_pred             cccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154           40 LPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLR  118 (360)
Q Consensus        40 IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k  118 (360)
                      ||+.|+ +|+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||.++|.+.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788898 99999999999999999999999999999999999999995 7999999999999999999999999998876


Q ss_pred             CCCCCCCcCcccchhhhccccCCCCC
Q 018154          119 MGIDPVTHSPRLDLLDLSSILSSSFY  144 (360)
Q Consensus       119 ~g~~p~t~~~~~~Ll~~ssil~Ss~~  144 (360)
                         .+|+.+++..|+.+...+|..|.
T Consensus        80 ---~~WT~eEd~~L~~~~~~~G~~W~  102 (128)
T 1h8a_C           80 ---TSWTEEEDRIIYQAHKRLGNRWA  102 (128)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             ---ccCCHHHHHHHHHHHHHHCcCHH
Confidence               67888888888888888887663

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=3.6e-21  Score=148.40  Aligned_cols=67  Identities=27%  Similarity=0.541  Sum_probs=64.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHH
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEE   75 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EED   75 (360)
                      ..+++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++|||+||.++|+|.+++++||.|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            35789999999999999999999999889999999999 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.70  E-value=6.3e-18  Score=158.35  Aligned_cols=106  Identities=18%  Similarity=0.319  Sum_probs=91.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ceecccccCCCCcccccccccccccCCCCc-----------------
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGN-----WRTLPKNAGLQRCGKSCRLRWTNYLRPDIK-----------------   66 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~n-----W~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk-----------------   66 (360)
                      .+.+++++||+|||++|+++|.++|..+     |..||+.|+ ||++.+||.||+.+|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4578899999999999999999998532     999999998 99999999999999999986                 


Q ss_pred             ------------cCCCChHHHHHHHHHHHH-h--------------------------------C---------------
Q 018154           67 ------------RGRFAFEEEETIIQLHSI-L--------------------------------G---------------   86 (360)
Q Consensus        67 ------------kg~WT~EEDe~Llelv~~-~--------------------------------G---------------   86 (360)
                                  +..||.|||..|...+.+ |                                |               
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999877 2                                1               


Q ss_pred             ----------CcchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154           87 ----------NKWSAIAARLPGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        87 ----------~kWs~IA~~LpGRT~~qcKnRW~~lLkk~  115 (360)
                                ..|..||+.+|+||..++|+||...|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                      16999999999999999999999988654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.66  E-value=1.2e-17  Score=142.51  Aligned_cols=83  Identities=17%  Similarity=0.380  Sum_probs=78.0

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccccc----CCCCcccccccccccccC-----CCCccC-CCChHHHHH
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNA----GLQRCGKSCRLRWTNYLR-----PDIKRG-RFAFEEEET   77 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----~~~Rt~kqCR~RW~n~L~-----p~lkkg-~WT~EEDe~   77 (360)
                      .++..++++||+|||+.|+++|.+||.++|..|++.+    + +|++.+|++||+++++     |.++++ +|++||+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            4577889999999999999999999988999999985    5 9999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCcchh
Q 018154           78 IIQLHSILGNKWSA   91 (360)
Q Consensus        78 Llelv~~~G~kWs~   91 (360)
                      |++++..+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999977

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.66  E-value=3.9e-17  Score=128.03  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=47.2

Q ss_pred             ccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           54 RLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        54 R~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      --||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999998653

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.2e-16  Score=123.80  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=60.1

Q ss_pred             cCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCc
Q 018154           61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTH  126 (360)
Q Consensus        61 L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~  126 (360)
                      +.|.+++++||.|||++|+++|.+||.+|..||.+|||||+.|||+||+.++++.++. |+++.+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence            5789999999999999999999999999999999999999999999999999988776 7776654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=121.29  Aligned_cols=60  Identities=23%  Similarity=0.367  Sum_probs=57.3

Q ss_pred             ccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCC
Q 018154           60 YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG  120 (360)
Q Consensus        60 ~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g  120 (360)
                      +|+|.+++++||.|||++|+++|.+||.+|.+||. ++|||++|||+||..+|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999988744

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=122.82  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCC
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPV  124 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~  124 (360)
                      .|.+++++||.|||++|+++|.+|| ++|..||.+|+|||+.|||+||.++|++.++++.|.+.
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e   67 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP   67 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence            4678999999999999999999999 89999999999999999999999999999988554443

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=5.3e-17  Score=121.40  Aligned_cols=57  Identities=26%  Similarity=0.549  Sum_probs=54.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCc
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK   66 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk   66 (360)
                      .|++++++||+|||++|+++|.+||.++|..||+.|+ +|+++||+.||.++|+|+++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4789999999999999999999999889999999998 99999999999999999886

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.62  E-value=1.1e-16  Score=136.69  Aligned_cols=79  Identities=19%  Similarity=0.365  Sum_probs=72.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccccc----CCCCccccccccccccc-----CCCCccCCCChHH-HHHH
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNA----GLQRCGKSCRLRWTNYL-----RPDIKRGRFAFEE-EETI   78 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----~~~Rt~kqCR~RW~n~L-----~p~lkkg~WT~EE-De~L   78 (360)
                      +...++++||+|||+.|+++|++||.++|..|++.+    + +|++.+|++||++++     .|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            355678999999999999999999988999999864    5 899999999999999     7999999999999 8999


Q ss_pred             HHHHHHhCCc
Q 018154           79 IQLHSILGNK   88 (360)
Q Consensus        79 lelv~~~G~k   88 (360)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999965

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.62  E-value=1e-16  Score=116.64  Aligned_cols=52  Identities=52%  Similarity=0.965  Sum_probs=49.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD   64 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~   64 (360)
                      +++|+||+|||++|+++|.+||..+|..||+.|+ +|+++|||.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999778999999998 999999999999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=4e-16  Score=116.58  Aligned_cols=55  Identities=22%  Similarity=0.445  Sum_probs=52.0

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||.++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999998765

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=1.5e-16  Score=115.52  Aligned_cols=52  Identities=33%  Similarity=0.756  Sum_probs=48.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD   64 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~   64 (360)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999779999999998 999999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=1.9e-16  Score=121.74  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=59.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccCCCCccCCCC
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLRPDIKRGRFA   71 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~p~lkkg~WT   71 (360)
                      .++..++++||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            457789999999999999999999998899999999976 8999999999999999999987653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=1.8e-15  Score=116.24  Aligned_cols=62  Identities=23%  Similarity=0.346  Sum_probs=56.4

Q ss_pred             ccCCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhHHHhhCCC
Q 018154           60 YLRPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRLLRMGI  121 (360)
Q Consensus        60 ~L~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk~l~k~g~  121 (360)
                      ..++..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||.++|++.+.+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            345677899999999999999999999 79999999999  999999999999999999877543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=1.4e-15  Score=110.49  Aligned_cols=50  Identities=30%  Similarity=0.581  Sum_probs=46.4

Q ss_pred             CccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           65 IKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=2.3e-15  Score=109.46  Aligned_cols=50  Identities=30%  Similarity=0.688  Sum_probs=47.2

Q ss_pred             CccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           65 IKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999999875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.54  E-value=1.8e-15  Score=128.66  Aligned_cols=79  Identities=20%  Similarity=0.368  Sum_probs=71.5

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCC
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSS  141 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~S  141 (360)
                      .+..++++||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.+.+.+   .+|+.+++..|+.+...+|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~---~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH---TPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC---SCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc---ccCCHHHHHHHHHHHHHHCc
Confidence            456789999999999999999999999999999999999999999999999998877   57888888888888888887


Q ss_pred             CC
Q 018154          142 SF  143 (360)
Q Consensus       142 s~  143 (360)
                      .|
T Consensus        83 ~W   84 (126)
T 3osg_A           83 QW   84 (126)
T ss_dssp             CH
T ss_pred             CH
Confidence            76

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.53  E-value=2e-15  Score=123.86  Aligned_cols=77  Identities=22%  Similarity=0.484  Sum_probs=69.4

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCC
Q 018154           64 DIKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSS  142 (360)
Q Consensus        64 ~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss  142 (360)
                      ++++|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+   .+|+.+++..|+.+...+|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~---~~Wt~eEd~~L~~~~~~~G~~   77 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK---TSWTEEEDRIIYQAHKRLGNR   77 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC---CCCCHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc---cCCCHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999996 7999999999999999999999999998876   678888888888888888876


Q ss_pred             C
Q 018154          143 F  143 (360)
Q Consensus       143 ~  143 (360)
                      |
T Consensus        78 W   78 (105)
T 1gv2_A           78 W   78 (105)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=9.8e-16  Score=116.89  Aligned_cols=56  Identities=32%  Similarity=0.486  Sum_probs=49.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccCCCCc
Q 018154           11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLRPDIK   66 (360)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~p~lk   66 (360)
                      ..+|++||+|||++|+++|.+||.++|..||+.+++ +|++.|||+||+++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            457899999999999999999998899999998642 89999999999999998763

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=8e-15  Score=107.15  Aligned_cols=49  Identities=27%  Similarity=0.448  Sum_probs=46.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhH
Q 018154           66 KRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk  114 (360)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=9.4e-15  Score=109.55  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      .+.+++++||+|||++|+++|.+|| ++|.+||.+|+|||+.|||+||.++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 8999999999999999999999998853

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=2.3e-15  Score=112.91  Aligned_cols=56  Identities=18%  Similarity=0.540  Sum_probs=52.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCC
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDI   65 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~l   65 (360)
                      -+.+++++||+|||++|+++|.+||.++|..||+.|+ +|+++|||.||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            3678999999999999999999999889999999998 9999999999999998653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.50  E-value=5.8e-15  Score=122.06  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=68.2

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154           67 RGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY  144 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~  144 (360)
                      +|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+   .+|+.+++..|+.+...+|..|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~---~~WT~eEd~~L~~~~~~~G~~W~   76 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT---DPWSPEEDMLLDQKYAEYGPKWN   76 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT---CCCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc---cccCHHHHHHHHHHHHHhCcCHH
Confidence            589999999999999999995 8999999999999999999999999998877   67888888888888888888764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-14  Score=112.81  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC------CcchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG------NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR  118 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G------~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k  118 (360)
                      +|.+++++||.|||++|+++|.+||      ++|.+||.+|+|||+.|||+||..+|.+.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999      78999999999999999999999999877655

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.48  E-value=1.4e-14  Score=123.79  Aligned_cols=75  Identities=20%  Similarity=0.383  Sum_probs=68.7

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154           67 RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY  144 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~  144 (360)
                      +|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+   .+|+.+++..|+.+...+|..|.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~---~~Wt~eEd~~L~~~~~~~G~~W~   77 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVK---HAWTPEEDETIFRNYLKLGSKWS   77 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCC---SCCCHHHHHHHHHHHHHSCSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccC---CCCCHHHHHHHHHHHHHHCcCHH
Confidence            68999999999999999999 78999999999999999999999999998877   57888888888888888887763

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.7e-15  Score=115.33  Aligned_cols=59  Identities=25%  Similarity=0.414  Sum_probs=54.1

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccC
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG   68 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg   68 (360)
                      +..|.+++++||+|||++|+++|.++| .+|..||+ ++ +|+++|||.||.++|+|.++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            357899999999999999999999999 59999999 76 8999999999999999877664

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=2.6e-14  Score=108.96  Aligned_cols=52  Identities=31%  Similarity=0.502  Sum_probs=46.8

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhHHH
Q 018154           65 IKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk~l  116 (360)
                      .++++||+|||++|+++|.+|| ++|..||..++  |||+.|||+||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4788999999999999999999 69999999866  9999999999999987643

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.47  E-value=6.1e-15  Score=107.80  Aligned_cols=50  Identities=28%  Similarity=0.512  Sum_probs=47.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccC
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLR   62 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~   62 (360)
                      ++++||+|||++|+++|.+||.++|..||+.+++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999976 6999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=4.9e-14  Score=105.15  Aligned_cols=50  Identities=22%  Similarity=0.338  Sum_probs=46.6

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHHh
Q 018154           63 PDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP-GRTDNEIKNYWNTHI  112 (360)
Q Consensus        63 p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp-GRT~~qcKnRW~~lL  112 (360)
                      ..+.+++||+|||++|+++|.+|| ++|.+||.+|+ |||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 99999999999 999999999998875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=5.8e-15  Score=114.88  Aligned_cols=61  Identities=23%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCceecccccCCCCcccccccccccccCCCCccCC
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGY-----GNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR   69 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~   69 (360)
                      .+|++++++||+|||++|+++|.+||.     .+|..||+.|+ +|+++|||.||.++|.+.++.|-
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999996     78999999999 99999999999999988776653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=2.1e-14  Score=107.17  Aligned_cols=51  Identities=25%  Similarity=0.490  Sum_probs=47.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154           11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      .+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++|||.||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456899999999999999999999999999999987899999999998875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.11  E-value=2e-14  Score=116.01  Aligned_cols=56  Identities=23%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             ccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154           60 YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        60 ~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~  115 (360)
                      .+.|.+++++||.|||++|+++|.+||.+|..||.+|+|||+.|||+||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999998754

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=2.2e-14  Score=111.16  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCcc
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR   67 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkk   67 (360)
                      ..|.+++++||+|||++|+++|.+|| .+|..||+.|+ +|++.||+.||..+|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999 59999999998 999999999999999876665

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.36  E-value=2.6e-13  Score=113.14  Aligned_cols=80  Identities=21%  Similarity=0.347  Sum_probs=67.9

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccC---CCCccccccccccccc-----CCCCccCCCChHHHHH-
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG---LQRCGKSCRLRWTNYL-----RPDIKRGRFAFEEEET-   77 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~---~~Rt~kqCR~RW~n~L-----~p~lkkg~WT~EEDe~-   77 (360)
                      -.+...++++||+|||++|+++|.+||.++|..|++.++   .+|++.+|++||++++     .|.+++|.-+++|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            345788999999999999999999999889999999762   3999999999999999     5889998877777655 


Q ss_pred             HHHHHHHhC
Q 018154           78 IIQLHSILG   86 (360)
Q Consensus        78 Llelv~~~G   86 (360)
                      +++|+..+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.33  E-value=2.2e-13  Score=106.65  Aligned_cols=61  Identities=25%  Similarity=0.349  Sum_probs=47.7

Q ss_pred             CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCc
Q 018154            2 GRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK   66 (360)
Q Consensus         2 gR~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk   66 (360)
                      +|.--...|++++|+||+|||++|+++|.++| .+|..||+.|  +|++.+|+.||.. |+...+
T Consensus        11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            35556678999999999999999999999999 5699999999  7999999999985 544443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.33  E-value=3.7e-13  Score=107.76  Aligned_cols=69  Identities=20%  Similarity=0.485  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceecccc----cCCCCccccccccccccc-----CCCCccC-CCChHHHHHHHHHHHH
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKN----AGLQRCGKSCRLRWTNYL-----RPDIKRG-RFAFEEEETIIQLHSI   84 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~----l~~~Rt~kqCR~RW~n~L-----~p~lkkg-~WT~EEDe~Llelv~~   84 (360)
                      ++||+|||++|+++|.+||.++|..|++.    ++ +|++.+|++||++++     .|.+++| +...+...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999998899999985    66 999999999999988     5665554 6777888889988875

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.32  E-value=1.2e-12  Score=102.46  Aligned_cols=52  Identities=10%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      ++...+++||.|||++|++++.+||    ++|.+||.+|||||.++||+||..+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3556789999999999999999999    789999999999999999999998864

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.29  E-value=5.3e-13  Score=113.79  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=68.2

Q ss_pred             cCCCCccCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhh-----HHHhhCCCCCCCcCccc
Q 018154           61 LRPDIKRGRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIR-----KRLLRMGIDPVTHSPRL  130 (360)
Q Consensus        61 L~p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLk-----k~l~k~g~~p~t~~~~~  130 (360)
                      +.+..++++||.|||+.|+++|.+||. +|+.|+..    |+|||+.+||+||+++++     +.+++ + .+++...+.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~kr-g-~~~p~e~~~   88 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR-G-EPVPQDLLD   88 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCC-C-SCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccC-C-CCCCHHHHH
Confidence            556778999999999999999999995 99999997    489999999999999998     44443 2 255555556


Q ss_pred             chhhhccccCCCCCC
Q 018154          131 DLLDLSSILSSSFYS  145 (360)
Q Consensus       131 ~Ll~~ssil~Ss~~~  145 (360)
                      .++.++..+|+.|+.
T Consensus        89 rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           89 RVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccchhc
Confidence            677888888887765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=102.77  Aligned_cols=48  Identities=10%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154           64 DIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        64 ~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      ...+++||.|||++|+++|.+||++|.+||.+|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999766

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=102.39  Aligned_cols=52  Identities=19%  Similarity=0.451  Sum_probs=48.9

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      +.+....+++||+|||++|+++|.+|| ++|..||+.|+ +|++.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            456777889999999999999999999 99999999999 99999999999998

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.87  E-value=9.4e-13  Score=106.24  Aligned_cols=56  Identities=23%  Similarity=0.451  Sum_probs=51.5

Q ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCC
Q 018154            6 CCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP   63 (360)
Q Consensus         6 ~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p   63 (360)
                      ...-|++++|+||+|||++|+++|.+|| .+|..||+.|+ +|++.+|+.||.++|+.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            3456889999999999999999999999 58999999999 99999999999999863

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.18  E-value=1.9e-11  Score=97.84  Aligned_cols=48  Identities=25%  Similarity=0.524  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhhHH
Q 018154           68 GRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLkk~  115 (360)
                      ++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999995 99999985    89999999999999999654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.18  E-value=1e-11  Score=116.55  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhc
Q 018154           63 PDIKRGRFAFEEEETIIQLHSILGNK------WSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLS  136 (360)
Q Consensus        63 p~lkkg~WT~EEDe~Llelv~~~G~k------Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~s  136 (360)
                      +.+++++||+|||++|+++|.+||++      |.+||+.|||||+++||+||+.+|++++.. .   ++..++..|+...
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~-v---y~~ded~~Li~d~   79 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY-V---YEVDKFGKLVRDD   79 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC-E---ECBCTTSCBCBCT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc-c---cccCcchhhhhcc
Confidence            45788999999999999999999975      999999999999999999999999998762 2   4444444444443


Q ss_pred             cccCCCCCCCc
Q 018154          137 SILSSSFYSSS  147 (360)
Q Consensus       137 sil~Ss~~~sS  147 (360)
                      .  |+ |..++
T Consensus        80 ~--Gn-~ikis   87 (246)
T 1ign_A           80 D--GN-LIKTK   87 (246)
T ss_dssp             T--SC-BCEES
T ss_pred             C--CC-ceeee
Confidence            3  44 44443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.17  E-value=3.4e-11  Score=100.33  Aligned_cols=53  Identities=25%  Similarity=0.433  Sum_probs=47.8

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhCC-cchhhcccC----CCCCHHHHHHHHHHHhhHH
Q 018154           63 PDIKRGRFAFEEEETIIQLHSILGN-KWSAIAARL----PGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        63 p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~L----pGRT~~qcKnRW~~lLkk~  115 (360)
                      +..++++||.|||+.|+++|.+||. +|+.|+..+    +|||+.+||+||+++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4567899999999999999999995 999999965    8999999999999999643

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.15  E-value=4.2e-12  Score=99.39  Aligned_cols=56  Identities=14%  Similarity=0.332  Sum_probs=50.5

Q ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCcccccccccccccC
Q 018154            6 CCDKSGLKKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus         6 ~~~K~~lkKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      .-+++...+++||+|||++|++++.+||   +.+|.+||+.|| ||+.++|+.||..++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3467788899999999999999999999   358999999999 9999999999998765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.15  E-value=3.1e-11  Score=98.56  Aligned_cols=58  Identities=17%  Similarity=0.410  Sum_probs=48.9

Q ss_pred             ccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhhHH-HhhCCCCC
Q 018154           66 KRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRKR-LLRMGIDP  123 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLkk~-l~k~g~~p  123 (360)
                      .+++||.|||++|++++.+||    ++|.+||.+|||||.++||+||+.+++.. ....|..|
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp   69 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP   69 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            467999999999999999996    68999999999999999999999998654 33444444

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.15  E-value=3.8e-11  Score=91.24  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=45.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHHhhH
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWSAIA---ARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs~IA---~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      ++.+||+|||+.|+++|++||.+|..|+   ..+++||..++|+||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5779999999999999999999999999   678999999999999988754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.12  E-value=4.1e-11  Score=102.28  Aligned_cols=52  Identities=25%  Similarity=0.477  Sum_probs=46.8

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhhH
Q 018154           63 PDIKRGRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        63 p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLkk  114 (360)
                      ...++++||.|||+.|+++|.+||. +|+.|+..    |+|||+.+||+||+++++.
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            3457889999999999999999995 99999986    4899999999999999953

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.8e-09  Score=80.12  Aligned_cols=48  Identities=13%  Similarity=0.079  Sum_probs=44.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      ..++||+||++++++++.+||.+|..||..||+||..+|+.+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999977643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.83  E-value=2.6e-09  Score=83.25  Aligned_cols=59  Identities=14%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CCccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCC
Q 018154           64 DIKRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDP  123 (360)
Q Consensus        64 ~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p  123 (360)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||..+ |||..+|+.||+.+.+......|..|
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp   67 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS   67 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence            34678999999999999999997    6799999998 99999999999998766444445444

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.81  E-value=4e-10  Score=91.98  Aligned_cols=48  Identities=10%  Similarity=0.333  Sum_probs=43.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCccccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      .+++||+|||++|++++.+||   +.+|..||+.+| ||+.++|+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            468999999999999999997   467999999999 999999999998864

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.79  E-value=4.4e-09  Score=85.86  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             ccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccC-----CCCCHHHHHHHHHHHhhHHHhhCC
Q 018154           50 GKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARL-----PGRTDNEIKNYWNTHIRKRLLRMG  120 (360)
Q Consensus        50 ~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~L-----pGRT~~qcKnRW~~lLkk~l~k~g  120 (360)
                      +.-+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||+.+.++.+...+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            36678899999976    89999999999999999999999999998     589999999999999988777654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.67  E-value=3.9e-09  Score=80.15  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecc---cccCCCCcccccccccccccCC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLP---KNAGLQRCGKSCRLRWTNYLRP   63 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IA---k~l~~~Rt~kqCR~RW~n~L~p   63 (360)
                      .++.+||+|||+.|+++|++||. +|..|+   ..+. +|+...+++||++..+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence            47899999999999999999995 999999   4555 99999999999997653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=8.3e-09  Score=77.50  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154            7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus         7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      .++.....++||+||++++++++.+|| .+|..||+.|+ +|+..+|+.+|....
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            455556779999999999999999999 79999999998 999999999986543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.57  E-value=4.9e-08  Score=91.00  Aligned_cols=49  Identities=20%  Similarity=0.325  Sum_probs=45.9

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      ..++||+||++++++++.+||.+|..||+.|++||..|||++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999988754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.43  E-value=9.9e-08  Score=97.45  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           68 GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      .+||.||-+++++++.+||.+|..||.+++.||..|||++|..+.
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999997654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.40  E-value=1.7e-07  Score=73.30  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             cCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      ...||.+|+++|.+++..|+    ++|.+||..+||||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46899999999999999998    479999999999999999999988854

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.33  E-value=4.9e-08  Score=76.01  Aligned_cols=51  Identities=16%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCcccccccccccccC
Q 018154           10 SGLKKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        10 ~~lkKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      .+.+++.||.|||++|.+++.+|+   +.+|.+||+.+  +|+..+|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            345678999999999999999998   45699999997  5999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.22  E-value=9.6e-07  Score=66.16  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=42.2

Q ss_pred             cCCCChHHHHHHHHHHHHh--------CC-cchhhcc-cCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSIL--------GN-KWSAIAA-RLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~--------G~-kWs~IA~-~LpGRT~~qcKnRW~~lLk  113 (360)
                      +.+||+|||..|++.|.++        |+ -|.++|. .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999        43 3999999 8999999999999988774

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.17  E-value=2.5e-07  Score=69.36  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=42.6

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCceeccc-ccCCCCcccccccccccccC
Q 018154           14 KGPWTPEEDQKLIDYIQKH--------GYGNWRTLPK-NAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      +.+||+|||+.|+++|.++        |..-|..+++ .++ .++-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        4334999999 787 9999999999999875

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.12  E-value=5.6e-07  Score=83.92  Aligned_cols=52  Identities=21%  Similarity=0.341  Sum_probs=46.9

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      ......++||+||++++++++.+|| .+|..||+.++ +|+..||+.+|.++.+
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3345678999999999999999999 89999999999 9999999999988765

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.07  E-value=6.2e-07  Score=70.14  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=43.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCceecccccCCCCcccccccccccccCC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGY---GNWRTLPKNAGLQRCGKSCRLRWTNYLRP   63 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p   63 (360)
                      ...||.+|+++|.+++..|+.   ++|..||..+| +|+..+|+.||...++-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            468999999999999999974   57999999999 99999999999987653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=9.3e-06  Score=61.29  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~-~LpGRT~~qcKnRW~~l  111 (360)
                      .|.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            467788899999999999999999999999999 59999999999988654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.92  E-value=1.4e-05  Score=77.57  Aligned_cols=100  Identities=20%  Similarity=0.242  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------cccc----------------------------
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------RWTN----------------------------   59 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------RW~n----------------------------   59 (360)
                      +.||..|...++.++.+||..+|..||..++ +++...++.       ||..                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999998 888776654       1110                            


Q ss_pred             ---------------ccCCCCccCCCChHHHHHHHHHHHHhC----Ccchhhcc------------cCCCCCHHHHHHHH
Q 018154           60 ---------------YLRPDIKRGRFAFEEEETIIQLHSILG----NKWSAIAA------------RLPGRTDNEIKNYW  108 (360)
Q Consensus        60 ---------------~L~p~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~------------~LpGRT~~qcKnRW  108 (360)
                                     +..+..++..||++||..||-++.+||    +.|..|..            .+..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                           001222456899999999999999999    56999962            34689999999999


Q ss_pred             HHHhhHH
Q 018154          109 NTHIRKR  115 (360)
Q Consensus       109 ~~lLkk~  115 (360)
                      ..+++-.
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.89  E-value=3.2e-06  Score=66.16  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=38.3

Q ss_pred             cCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHH
Q 018154           67 RGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWN  109 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~  109 (360)
                      .+.||.+|+++|.++..+|+    .+|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            45899999999999999998    47999999999999999998873

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.73  E-value=2.7e-05  Score=63.21  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           69 RFAFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G~---kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      -||.|||..||..+.+-|.   .|+.||..|.+|+.+|+++|++.+++-
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6999999999999999995   799999999999999999999998753

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.62  E-value=9.8e-05  Score=60.16  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             ccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCC-----CCCHHHHHHHHHHHhhHHHhhC
Q 018154           56 RWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLP-----GRTDNEIKNYWNTHIRKRLLRM  119 (360)
Q Consensus        56 RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~Lp-----GRT~~qcKnRW~~lLkk~l~k~  119 (360)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||+.+.++.++..
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4445554    3689999999999999999999999998763     7999999999999998776653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.60  E-value=9.7e-06  Score=63.42  Aligned_cols=44  Identities=11%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCceecccccCCCCcccccccccc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGY---GNWRTLPKNAGLQRCGKSCRLRWT   58 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l~~~Rt~kqCR~RW~   58 (360)
                      .+.||.||+++|..++.+|+.   ..|.+||+.+| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            568999999999999999974   47999999999 999999999885

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=2.5e-05  Score=58.91  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccc-ccCCCCccccccccccc
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPK-NAGLQRCGKSCRLRWTN   59 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~l~~~Rt~kqCR~RW~n   59 (360)
                      -.|.++...||+||-++..+++.+|| .+|..|++ .++ +|+..+|...|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            35778889999999999999999999 79999999 588 9999999886643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.73  E-value=9.9e-06  Score=62.48  Aligned_cols=44  Identities=14%  Similarity=0.328  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           69 RFAFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G~---kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      -||.|||..|+..+.+-|.   .|+.||..| +|+++||++|+..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999996   799999999 9999999999988863

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.33  E-value=0.00028  Score=54.25  Aligned_cols=45  Identities=16%  Similarity=0.204  Sum_probs=41.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~-~LpGRT~~qcKnRW~~l  111 (360)
                      ...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            4589999999999999999999999999 59999999999988743

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.30  E-value=0.00023  Score=57.75  Aligned_cols=45  Identities=20%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      ...||+||.++..++...||.+|..||..||+||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            357999999999999999999999999999999999999988654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.13  E-value=0.00011  Score=75.16  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154           10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        10 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      ......+||.||-+++++++.+|| .+|..||+.++ +|+..|||.+|.++-
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            344568999999999999999999 79999999999 999999999887643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.06  E-value=0.0011  Score=59.69  Aligned_cols=46  Identities=13%  Similarity=0.217  Sum_probs=36.7

Q ss_pred             CCCChHHHHHHHHHHHHhC-Ccchhhcc--cC------------CCCCHHHHHHHHHHHhh
Q 018154           68 GRFAFEEEETIIQLHSILG-NKWSAIAA--RL------------PGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G-~kWs~IA~--~L------------pGRT~~qcKnRW~~lLk  113 (360)
                      ..||.+||..|+..+.+|| ++|..|-.  .|            ..++...+..|...+|+
T Consensus       135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            3699999999999999999 99999853  21            12456789999887774

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.94  E-value=0.00013  Score=59.52  Aligned_cols=49  Identities=14%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccC----CCCcccccccccccccC
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG----LQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~----~~Rt~kqCR~RW~n~L~   62 (360)
                      ..++||.||++.|+++++++| .+|..|+..+.    .+|+...++.||..+.+
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            448999999999999999999 89999999883    27999999999877543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.88  E-value=0.00065  Score=53.50  Aligned_cols=48  Identities=13%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             cCCCChHHHHHHHHHHHHhC----------CcchhhcccCC----CCCHHHHHHHHHHHhhH
Q 018154           67 RGRFAFEEEETIIQLHSILG----------NKWSAIAARLP----GRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G----------~kWs~IA~~Lp----GRT~~qcKnRW~~lLkk  114 (360)
                      ...||.+|-..||+++..+.          ..|..||..|.    .||+.||+.+|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999997643          25999998873    69999999999988754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.00045  Score=53.11  Aligned_cols=45  Identities=11%  Similarity=0.117  Sum_probs=40.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceeccc-ccCCCCccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPK-NAGLQRCGKSCRLRWTN   59 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~l~~~Rt~kqCR~RW~n   59 (360)
                      ....||+||-++..+++.+|| .+|..|++ .++ +|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            557899999999999999999 79999999 588 9999999886653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.69  E-value=0.00044  Score=56.11  Aligned_cols=44  Identities=14%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTN   59 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n   59 (360)
                      ...||+||.+++.++...|| .+|..|++.++ +|+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence            46799999999999999999 79999999998 9999999886643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.49  E-value=0.00012  Score=57.85  Aligned_cols=49  Identities=22%  Similarity=0.594  Sum_probs=40.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC------CC---Cceeccccc---CCCCccccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHG------YG---NWRTLPKNA---GLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G------~~---nW~~IAk~l---~~~Rt~kqCR~RW~n~L   61 (360)
                      +...||.+|...|++++....      ..   -|..||..|   |..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            568899999999999998642      11   499999885   46899999999998754

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.19  E-value=0.0088  Score=59.44  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------ccccc---------------------------
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------RWTNY---------------------------   60 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------RW~n~---------------------------   60 (360)
                      +.|+.-|=..++.++.+||..+-..||..|+.+++...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999998889999999853566555443       11110                           


Q ss_pred             -------------c----CCC-CccCCCChHHHHHHHHHHHHhC----Ccchhhccc------------CCCCCHHHHHH
Q 018154           61 -------------L----RPD-IKRGRFAFEEEETIIQLHSILG----NKWSAIAAR------------LPGRTDNEIKN  106 (360)
Q Consensus        61 -------------L----~p~-lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~------------LpGRT~~qcKn  106 (360)
                                   |    .+. .++..||.+||..||-++.+||    +.|.+|-..            +..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         1    011 1345799999999999999999    569999432            46799999999


Q ss_pred             HHHHHhhHHHh
Q 018154          107 YWNTHIRKRLL  117 (360)
Q Consensus       107 RW~~lLkk~l~  117 (360)
                      |...+++-..+
T Consensus       284 Rc~tLi~~IeK  294 (374)
T 2y9y_A          284 RGNTLLQCLEK  294 (374)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999965433

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.76  E-value=0.0019  Score=52.45  Aligned_cols=45  Identities=18%  Similarity=0.387  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCceecccccCCCCcccccccccccc
Q 018154           15 GPWTPEEDQKLIDYIQKHGY--GNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~--~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      .-||.|||..|+...++.|+  ..|..||+.++ +|++.|+++|++..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            46999999999999999985  47999999998 99999999998664

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.62  E-value=0.002  Score=49.75  Aligned_cols=48  Identities=17%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC--CCceecccccCCCCcccccccccccccC
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGY--GNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      .--.||.|||..|+..+++.|+  ..|..||+.+  +|++.|+..|+...++
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3457999999999999999995  3699999888  5999999999988664

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.82  E-value=0.022  Score=51.16  Aligned_cols=40  Identities=30%  Similarity=0.630  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccc
Q 018154            4 APCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKN   43 (360)
Q Consensus         4 ~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~   43 (360)
                      -|++.++.-....||.+||..|+.+|.+||.++|..|-..
T Consensus       124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A          124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence            3555666666678999999999999999999999999653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.27  E-value=0.032  Score=45.34  Aligned_cols=49  Identities=16%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccC----CCCccccccccccccc
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG----LQRCGKSCRLRWTNYL   61 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~----~~Rt~kqCR~RW~n~L   61 (360)
                      ++...||.||...|.+++++++ -.|-.|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999 89999998763    2577778888877654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.23  E-value=0.23  Score=37.69  Aligned_cols=48  Identities=13%  Similarity=0.057  Sum_probs=40.5

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCc---chhhcccC--CCCCHHHHHHHHHHHh
Q 018154           65 IKRGRFAFEEEETIIQLHSILGNK---WSAIAARL--PGRTDNEIKNYWNTHI  112 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G~k---Ws~IA~~L--pGRT~~qcKnRW~~lL  112 (360)
                      ..+-.||+|..+..+++|..+|..   +..|...|  +|.|..+|+.+...+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999955   67887765  6899999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.08  E-value=0.21  Score=48.40  Aligned_cols=46  Identities=17%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             CCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           68 GRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      +.||..|....+.++.+|| ++|..||..|+|+|...|+.+......
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4799999999999999999 689999999999999999877666553

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.89  E-value=0.24  Score=47.14  Aligned_cols=28  Identities=43%  Similarity=0.847  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceeccc
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPK   42 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk   42 (360)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            5699999999999999999999999964

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.16  E-value=0.4  Score=45.64  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             CCCChHHHHHHHHHHHHhC-Ccchhhcc
Q 018154           68 GRFAFEEEETIIQLHSILG-NKWSAIAA   94 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G-~kWs~IA~   94 (360)
                      ..|+.+||..||..|.+|| +.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999 99999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-23
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-21
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-18
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	8e-18
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-16
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-10
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-11
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-11
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	4e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-04
d1fexa_	59	a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 96	0.004

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (218), Expect = 8e-23
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+LI  +QK+G   W  + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.7 bits (207), Expect = 3e-21
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
          K  WT EED+KL   ++++G  +W+ +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 67  RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIR 113
           + R+  EE+E + +L    G + W  IA  LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (185), Expect = 3e-18
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ-RCGKSCRLRWTNYLR 62
          K+  W  EED+ L   ++K+G GNW  +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 7e-18
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQ-RCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G GNW  + KN     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 75.1 bits (184), Expect = 8e-18
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNA---GLQRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + L++ ++  G G WR +   A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GRFAFEEE-ETIIQLHSILGNK 88
          G    ++  + ++  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (175), Expect = 2e-16
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYG-----NWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68
          K  +T EED+ ++D ++K+         +  +         G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 69 RFAFEEEETIIQLH 82
              +  + +    
Sbjct: 60 YEVDKFGKLVRDDD 73

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 9e-14
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE 73
             WT EE +     + K G   W  + K  G  R     +     Y +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 74 EEE 76
            +
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 67  RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118
             ++  EE+E   Q  +  G +W+ I+  +  RT  ++K+Y   + + ++  
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 67  RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113
           +  +  EE+  I Q H  LGN+W+ IA  LPGRTDN IKN+WN+ +R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62
          K  WT EED+ +    ++     W  + K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 4e-13
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 8  DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL--QRCGKSCRLRW 57
          +++   + PWT  + + L   +Q++  G+     K A     +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 6e-12
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 51  KSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
           + C  RWT              EE+   +Q     G  + AI+  +  ++  ++KN++  
Sbjct: 2   QKCNARWTT-------------EEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 48

Query: 111 HIRK 114
           + R+
Sbjct: 49  YRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 8e-10
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL-RPDIKRGRFA 71
              WT EE    +  I+K+G  +++ +    G  +     +  + NY  R +I      
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQE 61

Query: 72 FEEE 75
          +E E
Sbjct: 62 WEAE 65

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 WTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60
          WT +E+  L++ +   G+GNW+ +       +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 66  KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114
               ++ +E+ET  +        +  IA+ L  +T  E   Y+    + 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 55.3 bits (133), Expect = 6e-11
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL--QRCGKSCRLRWTNYLRPDIKR---GRF 70
          PW+ +E++     +  +           A     R  +  +  +   L  DIK    G+ 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKYIESGKV 61

Query: 71 AF 72
           F
Sbjct: 62 PF 63

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 73  EEEETIIQLHSILGNK---WSAIAARLPGRTDNEIKNYWNTHIR 113
           E +  I+ +    G +   +S I+ +L  +T  E+ + +   ++
Sbjct: 39  EADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 9  KSGLKKGPWTPEEDQKLIDYIQKHG--YGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62
           +G K   WT E D+ ++   Q+ G     +  + +  G  +       R+   ++
Sbjct: 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 16 PWTPEEDQKLIDYIQKHG------YGN--WRTLPKNAGLQRCGKSCRLRWTNYLR 62
           +T  +D  ++ Y++++        GN  W+ + K++  Q   +S + R+  +LR
Sbjct: 4  AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.67
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.53
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.41
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.38
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.33
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.33
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.29
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.21
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.2
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.19
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.19
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.17
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.06
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.04
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.04
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.78
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.77
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.59
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.98
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.9
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.48
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.21
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.39
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.22
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.36
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.24
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.04
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	91.89
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.53
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.37

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.4e-18  Score=123.29  Aligned_cols=52  Identities=52%  Similarity=0.965  Sum_probs=50.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154           12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD   64 (360)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~   64 (360)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5899999999999999999999889999999998 999999999999999985

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.4e-19  Score=142.68  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCC-----ceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHH
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGN-----WRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHS   83 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~n-----W~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~   83 (360)
                      |++||+|||++|+++|.+||...     |..||+.|+ +|+++|||.||.++|+|.+++++||.+||.+|+.++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            68999999999999999999643     999999998 9999999999999999999999999999999876553

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.5e-16  Score=111.79  Aligned_cols=47  Identities=51%  Similarity=0.887  Sum_probs=45.1

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      +++||+|||++|+++|.+||++|+.||.+|||||+.+||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.1e-16  Score=114.26  Aligned_cols=50  Identities=30%  Similarity=0.699  Sum_probs=47.5

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           65 IKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      +.+|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||.++|+|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.9e-17  Score=116.58  Aligned_cols=50  Identities=32%  Similarity=0.767  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD   64 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~   64 (360)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999899999999998 999999999999999985

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.6e-15  Score=107.46  Aligned_cols=48  Identities=31%  Similarity=0.605  Sum_probs=45.6

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           67 RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      |++||.|||++|+++|.+|| ++|.+||..|+|||+.||++||.++|.|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999975

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2e-15  Score=119.71  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCccc
Q 018154           67 RGRFAFEEEETIIQLHSILGNK------WSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRL  130 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~k------Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~  130 (360)
                      ++.||+|||++|+++|.+||..      |..||..|||||++|||+||+++|.+.+.+..|.+.+++...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~   70 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVR   70 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHH
Confidence            5799999999999999999964      999999999999999999999999999987555555544433

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.51  E-value=7.6e-16  Score=121.07  Aligned_cols=74  Identities=20%  Similarity=0.444  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCceeccccc---CCCCcccccccccccccC-----CCCccCCCChHHHHHHHHHHHHhC
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNA---GLQRCGKSCRLRWTNYLR-----PDIKRGRFAFEEEETIIQLHSILG   86 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l---~~~Rt~kqCR~RW~n~L~-----p~lkkg~WT~EEDe~Llelv~~~G   86 (360)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+|++.+|++||+++|+     +..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999752   238999999999999884     667888898776   455555555


Q ss_pred             Ccchh
Q 018154           87 NKWSA   91 (360)
Q Consensus        87 ~kWs~   91 (360)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-15  Score=108.52  Aligned_cols=54  Identities=33%  Similarity=0.538  Sum_probs=48.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccC-CCCcccccccccccccCCCCc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLRPDIK   66 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~-~~Rt~kqCR~RW~n~L~p~lk   66 (360)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999999999998732 289999999999999988763

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.6e-14  Score=101.59  Aligned_cols=51  Identities=29%  Similarity=0.467  Sum_probs=46.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-Ccchhhccc--CCCCCHHHHHHHHHHHhhHHH
Q 018154           66 KRGRFAFEEEETIIQLHSILG-NKWSAIAAR--LPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G-~kWs~IA~~--LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      ++++||+|||++|+++|.+|| ++|+.||..  +++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 689999987  569999999999999887643

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=99.33  Aligned_cols=48  Identities=27%  Similarity=0.470  Sum_probs=43.5

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcchhhcccC--CCCCHHHHHHHHHHHhh
Q 018154           66 KRGRFAFEEEETIIQLHSILG-NKWSAIAARL--PGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G-~kWs~IA~~L--pGRT~~qcKnRW~~lLk  113 (360)
                      ++++||+|||+.|+++|.+|| ++|+.||..+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5999999875  49999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-14  Score=103.52  Aligned_cols=50  Identities=28%  Similarity=0.479  Sum_probs=44.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCceecccccC-CCCcccccccccccccC
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~-~~Rt~kqCR~RW~n~L~   62 (360)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            579999999999999999999999999998753 38999999999998653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-13  Score=101.67  Aligned_cols=53  Identities=21%  Similarity=0.338  Sum_probs=48.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhC
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRM  119 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~  119 (360)
                      ...||.|||++|++++.+||.+|..||.+||+||+.+|++||+.++++..+.+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999998876553

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.3e-14  Score=100.64  Aligned_cols=47  Identities=26%  Similarity=0.553  Sum_probs=44.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      |++||+|||++|+++|.+|| .+|..||+.|| +|++.+|+.||..+|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            68999999999999999999 68999999998 9999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.3e-14  Score=99.47  Aligned_cols=44  Identities=23%  Similarity=0.730  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154           16 PWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      .||+|||++|+++|.+||.++|..||+.|+ +|++.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999875

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.8e-13  Score=94.97  Aligned_cols=43  Identities=16%  Similarity=0.331  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHH
Q 018154           69 RFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      .||.|||++|+++|.+|| ++|..||.+|+|||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-12  Score=95.50  Aligned_cols=50  Identities=10%  Similarity=0.195  Sum_probs=45.3

Q ss_pred             CCCCccCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHH
Q 018154           62 RPDIKRGRFAFEEEETIIQLHSILGN----KWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        62 ~p~lkkg~WT~EEDe~Llelv~~~G~----kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      .+...+++||.|||++|+++|.+||.    +|.+||..|||||+.||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567889999999999999999994    599999999999999999999764

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.6e-12  Score=95.69  Aligned_cols=51  Identities=18%  Similarity=0.430  Sum_probs=46.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC---CceecccccCCCCccccccccccc
Q 018154            8 DKSGLKKGPWTPEEDQKLIDYIQKHGYG---NWRTLPKNAGLQRCGKSCRLRWTN   59 (360)
Q Consensus         8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~l~~~Rt~kqCR~RW~n   59 (360)
                      +++...+++||+|||++|+++|.+||.+   +|..||+.|| +|++.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5677888999999999999999999965   4999999999 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.4e-13  Score=100.46  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChH
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE   73 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~E   73 (360)
                      ..+||+|||++|+++|..|| .+|..||+.|+ +|++.+|+.||.+++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            36899999999999999999 79999999999 999999999999999887777665543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=6.6e-12  Score=98.21  Aligned_cols=52  Identities=23%  Similarity=0.468  Sum_probs=46.2

Q ss_pred             CCChHHHHHHHHHHHHhC-Ccchhhccc----CCCCCHHHHHHHHHHHhhHHHhhCC
Q 018154           69 RFAFEEEETIIQLHSILG-NKWSAIAAR----LPGRTDNEIKNYWNTHIRKRLLRMG  120 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-~kWs~IA~~----LpGRT~~qcKnRW~~lLkk~l~k~g  120 (360)
                      +||.|||++|+++|.+|| ++|+.|+..    +++||+.+||+||+++|+.......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~   58 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ   58 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcc
Confidence            799999999999999999 699999974    6899999999999999987655433

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.19  E-value=7.9e-12  Score=92.84  Aligned_cols=46  Identities=17%  Similarity=0.447  Sum_probs=42.2

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           68 GRFAFEEEETIIQLHSILGN----KWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~----kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      .+||.|||++|++++..||.    +|.+||.+|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999994    59999999999999999999976654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.8e-11  Score=98.13  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             ccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCc---chhhcccCCCCCHHHHHHHHHHHhhH
Q 018154           43 NAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNK---WSAIAARLPGRTDNEIKNYWNTHIRK  114 (360)
Q Consensus        43 ~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~k---Ws~IA~~LpGRT~~qcKnRW~~lLkk  114 (360)
                      .++ ..+..++..++.+...+..+...||.|||++||+.++++|.+   |..||..|+||++.+||+||..+++-
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            344 677777888888888888888899999999999999999977   99999999999999999999888753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.9e-11  Score=89.11  Aligned_cols=48  Identities=19%  Similarity=0.113  Sum_probs=44.1

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           65 IKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        65 lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      ....+||.||+++|++++.+||.+|..||.+|||||..||+++|+...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999998654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.04  E-value=9.6e-12  Score=92.37  Aligned_cols=44  Identities=11%  Similarity=0.366  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ceecccccCCCCccccccccccc
Q 018154           15 GPWTPEEDQKLIDYIQKHGYGN---WRTLPKNAGLQRCGKSCRLRWTN   59 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~n---W~~IAk~l~~~Rt~kqCR~RW~n   59 (360)
                      .+||+|||++|+++|.+||.+.   |.+||+.|+ +|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999654   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.6e-11  Score=88.04  Aligned_cols=47  Identities=21%  Similarity=0.339  Sum_probs=44.2

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk  113 (360)
                      ..+||+|||++|++++..||.+|..||.+|||||..+|+++|+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999988764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5e-10  Score=83.92  Aligned_cols=50  Identities=12%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154           10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus        10 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      ......+||+|||++|+++|.+|| .+|..||+.|+ +|+..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            444558899999999999999999 79999999998 999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.6e-10  Score=83.34  Aligned_cols=47  Identities=23%  Similarity=0.444  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      ..+||+|||++|++++.+|| .+|..||+.|| +|+..+|+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            46799999999999999999 78999999999 9999999999988654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=3e-09  Score=85.10  Aligned_cols=52  Identities=19%  Similarity=0.391  Sum_probs=46.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCC--ceecccccCCCCccccccccccccc
Q 018154            9 KSGLKKGPWTPEEDQKLIDYIQKHGYGN--WRTLPKNAGLQRCGKSCRLRWTNYL   61 (360)
Q Consensus         9 K~~lkKg~WT~EEDe~L~~lV~k~G~~n--W~~IAk~l~~~Rt~kqCR~RW~n~L   61 (360)
                      +.|.+...||.|||+.|++.++++|+..  |..||+.|+ +|++.+||.||...+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4566778999999999999999999543  999999998 999999999997644

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.8e-06  Score=63.08  Aligned_cols=44  Identities=16%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHh
Q 018154           68 GRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lL  112 (360)
                      +.||.||+.+|.+++.+|.    ++|.+||..+ |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999996    6799999999 999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=7e-06  Score=59.17  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhccc-CCCCCHHHHHHHHHHH
Q 018154           68 GRFAFEEEETIIQLHSILGNKWSAIAAR-LPGRTDNEIKNYWNTH  111 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~kWs~IA~~-LpGRT~~qcKnRW~~l  111 (360)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|+..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3799999999999999999999999975 6999999999998754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=1.4e-05  Score=57.50  Aligned_cols=42  Identities=12%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCceecccc-cCCCCccccccccccc
Q 018154           16 PWTPEEDQKLIDYIQKHGYGNWRTLPKN-AGLQRCGKSCRLRWTN   59 (360)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~-l~~~Rt~kqCR~RW~n   59 (360)
                      .||+||..++.+++..|| .+|..|++. +| +|+..+|...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            699999999999999999 799999986 56 9999999987754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=2.9e-05  Score=56.52  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCceecccccCCCCcccccccccccc
Q 018154           15 GPWTPEEDQKLIDYIQKHGY---GNWRTLPKNAGLQRCGKSCRLRWTNY   60 (360)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l~~~Rt~kqCR~RW~n~   60 (360)
                      +.||+||+.+|.+++.+|..   .+|.+||..+|  |+..+|..|+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            57999999999999999963   45999999995  9999999998653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00052  Score=49.70  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-------c--chhhcc-cCCCCCHHHHHHHHHHHhh
Q 018154           67 RGRFAFEEEETIIQLHSILGN-------K--WSAIAA-RLPGRTDNEIKNYWNTHIR  113 (360)
Q Consensus        67 kg~WT~EEDe~Llelv~~~G~-------k--Ws~IA~-~LpGRT~~qcKnRW~~lLk  113 (360)
                      +.+||.|||+.|++.|..+..       +  |.+.+. .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            458999999999999999741       1  999984 7899999999999988875

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00035  Score=50.62  Aligned_cols=48  Identities=23%  Similarity=0.483  Sum_probs=40.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC------C--ceeccc-ccCCCCcccccccccccccC
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYG------N--WRTLPK-NAGLQRCGKSCRLRWTNYLR   62 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~------n--W~~IAk-~l~~~Rt~kqCR~RW~n~L~   62 (360)
                      +.+||+|||+.|+++|.++...      +  |..+++ .++ .++-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4689999999999999998522      1  999985 566 8999999999988875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.003  Score=43.25  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=38.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHH
Q 018154           68 GRFAFEEEETIIQLHSILGNKWSAIA---ARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        68 g~WT~EEDe~Llelv~~~G~kWs~IA---~~LpGRT~~qcKnRW~~l  111 (360)
                      ..||+||-.-|+..|+.+|+.|..|-   ..-|||+..++..+|+.+
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            47999999999999999999999995   344899999999988765

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.22  E-value=0.0041  Score=45.46  Aligned_cols=47  Identities=13%  Similarity=0.097  Sum_probs=39.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcch---hhccc--CCCCCHHHHHHHHHHHh
Q 018154           66 KRGRFAFEEEETIIQLHSILGNKWS---AIAAR--LPGRTDNEIKNYWNTHI  112 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~kWs---~IA~~--LpGRT~~qcKnRW~~lL  112 (360)
                      .+-.||+||.++.++++..+|..|.   .|...  ++|+|..+|+.+...+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3457999999999999999998874   55554  68999999999987774

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.024  Score=41.93  Aligned_cols=50  Identities=18%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             ccCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154           66 KRGRFAFEEEETIIQLHSILGN----KWSAIAARLPGRTDNEIKNYWNTHIRKR  115 (360)
Q Consensus        66 kkg~WT~EEDe~Llelv~~~G~----kWs~IA~~LpGRT~~qcKnRW~~lLkk~  115 (360)
                      ..+.|+++|-.+|-.++..+..    =|..+|..++.|+...|..+|...++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            4468999999999999999873    3999999999999999999998776443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.24  E-value=0.0081  Score=43.84  Aligned_cols=48  Identities=10%  Similarity=0.162  Sum_probs=34.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc--eecccccC-CCCcccccccccccc
Q 018154           13 KKGPWTPEEDQKLIDYIQKHGYGNW--RTLPKNAG-LQRCGKSCRLRWTNY   60 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G~~nW--~~IAk~l~-~~Rt~kqCR~RW~n~   60 (360)
                      .+-.||+||-++++++|..+|...|  ..|...|+ .+++..+++.+...|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4568999999999999999995433  34554432 177888887765544

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.024  Score=41.95  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=42.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCcccccccccccccCC
Q 018154           13 KKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYLRP   63 (360)
Q Consensus        13 kKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p   63 (360)
                      .-+.|.++|-++|-.++....   ++-|..||..+| .|++-.|..+|...+.-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            347999999999999999765   345999999999 99999999998876643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.017  Score=39.37  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCceecccccC--CCCcccccccccc
Q 018154           14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG--LQRCGKSCRLRWT   58 (360)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~--~~Rt~kqCR~RW~   58 (360)
                      +..||+||-.-|...|+++| ..|..|-=..|  +||+......+|+
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHH
Confidence            35799999999999999999 89999975544  3677766655554

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.53  E-value=0.19  Score=41.00  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             CCccCCCChHHHHHHHHHHHHhC-Cc---chhhccc------------CCCCCHHHHHHHHHHHhhHHH
Q 018154           64 DIKRGRFAFEEEETIIQLHSILG-NK---WSAIAAR------------LPGRTDNEIKNYWNTHIRKRL  116 (360)
Q Consensus        64 ~lkkg~WT~EEDe~Llelv~~~G-~k---Ws~IA~~------------LpGRT~~qcKnRW~~lLkk~l  116 (360)
                      ..++..+|.|||.-|+-.+.+|| ++   |..|-..            +.+||+..+..|...+++-..
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            34555799999999999999999 55   8887422            257999999999999986443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.37  E-value=0.56  Score=32.45  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHH
Q 018154           69 RFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTH  111 (360)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~l  111 (360)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+.+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            499999999999999999 6899999999999999998765443