Citrus Sinensis ID: 018178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHcEEEcccccHHHHHHHHHcccEEEEEEEccccccHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccEEEEEEEccHcHHHHHHHccEEEEccccccHHHHHHHHcccEEEEEEEcccccEEEEEEEEccccccccccEEccccccccccccEEEEEEEEEEcccccEEEEEEccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHEHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mssdtakenasvvdssvtekhdvgnsddpesssykanehrcpslakeakaghsngqlenstdnnkgklynTRYFIIKSLNHQNIQLSIEKEIWAtqvmnepileeafhnsGKVILIFSVNMSGFFQGYAQMMSSvgwrrdnvwsqgngknnpwgrsfKVKWLRLntlpfqktlhlknplndykpvkisrdcqelPQDIGEALCHLldgkddvdgiqtsfhrddlpakrpciepscslgdeeyhkpplhvplgktpmpypsflyqhqggpsnfhlaqrcggdaenlpftsmsskFSRIyhsrkgnlsnlqvdcdlssrydfwglsadsplastiteddFLEMVLVPVFSNLEMVFFLSYIL
Flexible Loop (DISEMBL)
mssdtakenasvvdssvtekhdvgnsddpesssykaNEHRCPSLAKeakaghsngqlenstdnnkgklYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSqgngknnpwgrsFKVKWLRLNTLPfqktlhlknplndykPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSfhrddlpakrpCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Low Complexity Region (SEG)
MSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Disordered region (IsUnstruct)
******************************************************************KLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFH************************************PYPSFLYQHQG***NFHLAQRCGG*************FSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYI*
Disordered Region (DISOPRED)
*******************************************************************LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDV***********************************************************************************************************************TITEDDFLEMVLVPVFSNLEMVFFLSYIL
Disordered Region (DISEMBL)
*****************************************PSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Disordered Region (DISPRO)
**********************************************************NSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRP*****************************************************E***F*S*SSKFSRIYHS********************W*LSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLVPVFSNLEMVFFLSYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q0DA50	665	Zinc finger CCCH domain-c	yes	no	0.375	0.203	0.510	3e-31
A9LNK9	631	Cleavage and polyadenylat	no	no	0.372	0.212	0.5	2e-29
Q9QY02	738	YTH domain-containing pro	yes	no	0.583	0.284	0.340	5e-25
B2RR83	1445	Probable ATP-dependent RN	yes	no	0.358	0.089	0.462	1e-24
Q96MU7	727	YTH domain-containing pro	yes	no	0.586	0.290	0.338	1e-24
Q5R746	671	YTH domain-containing pro	no	no	0.366	0.196	0.452	1e-24
Q9H6S0	1430	Probable ATP-dependent RN	no	no	0.361	0.090	0.459	3e-24
P59326	559	YTH domain family protein	no	no	0.372	0.239	0.363	4e-15
Q5RFL8	585	YTH domain family protein	no	no	0.372	0.229	0.356	5e-15
Q7Z739	585	YTH domain family protein	no	no	0.372	0.229	0.356	5e-15

>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 2/137 (1%)

Query: 71  TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
           +RYFI+KS N +N+++S+++ IWATQ  NE  L EAF +   VILIFS+N +  FQG A+
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAK 319

Query: 131 MMSSV-GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISR 189
           M S + G+     W   +G  + +GR+F ++WL+L  L FQKT HL+NP ND  PVKISR
Sbjct: 320 MTSRIGGYIGGGNWKSAHGTAH-YGRNFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISR 378

Query: 190 DCQELPQDIGEALCHLL 206
           DCQEL   IGE L  LL
Sbjct: 379 DCQELEPFIGEQLASLL 395

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 2/136 (1%)

Query: 72  RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
           RYF++KS N +N +LS+++ +WATQ  NE  L EAF +   VILIFSVN +  FQG A+M
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297

Query: 132 MSSV-GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
            S + G+     W   +G    +GR+F VKWL+L  L F KT +L+NP N+  PVKISRD
Sbjct: 298 TSRIGGYIGGGNWKHEHGTAQ-YGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRD 356

Query: 191 CQELPQDIGEALCHLL 206
           CQEL   +GE L  LL
Sbjct: 357 CQELEPSVGEQLASLL 372

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation. May interact with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Binds RNA in a calcium-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 114/238 (47%), Gaps = 28/238 (11%)

Query: 2   SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNG 55
           +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG    
Sbjct: 273 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 332

Query: 56  Q----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
                       ++ T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  
Sbjct: 333 HEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 392

Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSS-------VGWRRDNVWSQGNGKNNPWGRSFK 158
           AF ++  VILIFSV  SG FQG+A++ S        + W    V   G       G  FK
Sbjct: 393 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW----VLPAGMSAKM-LGGVFK 447

Query: 159 VKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQ 216
           + W+    LPF K+ HL NP N++KPVKI RD QE+  + G  LC L    + +D  Q
Sbjct: 448 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQ 505

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 5/134 (3%)

Query: 72   RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
            RYFI+KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++M
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363

Query: 132  MSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDC 191
             S +G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD 
Sbjct: 1364 SSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1418

Query: 192  QELPQDIGEALCHL 205
            QEL   +GE L  L
Sbjct: 1419 QELEPQVGEQLLQL 1432

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 28/239 (11%)

Query: 2   SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNG 55
           +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG    
Sbjct: 270 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 329

Query: 56  Q----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
                       ++ T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  
Sbjct: 330 HEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 389

Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSS-------VGWRRDNVWSQGNGKNNPWGRSFK 158
           AF ++  VILIFSV  SG FQG+A++ S        + W    V   G       G  FK
Sbjct: 390 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW----VLPAGMSAKM-LGGVFK 444

Query: 159 VKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT 217
           + W+    LPF K+ HL NP N++KPVKI RD QE+  + G  LC L    + +D  Q 
Sbjct: 445 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQV 503

May be part of a signal transduction pathway that influences splice site selection.

Homo sapiens (taxid: 9606)

>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 5/137 (3%)

Query: 71  TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
            RYFI+KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++
Sbjct: 529 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSR 588

Query: 131 MMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
           M S +G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD
Sbjct: 589 MSSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRD 643

Query: 191 CQELPQDIGEALCHLLD 207
            QEL   +GE L  L +
Sbjct: 644 GQELEPQVGEQLLQLWE 660

Pongo abelii (taxid: 9601)

>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 5/135 (3%)

Query: 71   TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
             RYFI+KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 1347

Query: 131  MMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
            M S +G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD
Sbjct: 1348 MSSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRD 1402

Query: 191  CQELPQDIGEALCHL 205
             QEL   +GE L  L
Sbjct: 1403 GQELEPLVGEQLLQL 1417

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 9/143 (6%)

Query: 68  LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN---SGKVILIFSVNMSGF 124
           L + R FIIKS +  +I  SI+  IW +       L+ AF +    G V L+FSVN SG 
Sbjct: 386 LKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGH 445

Query: 125 FQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
           F G A+M S V +     VWSQ     + W   F VKW+ +  +P  +  H++   ND K
Sbjct: 446 FCGVAEMKSPVDYGTSAGVWSQ-----DKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNK 500

Query: 184 PVKISRDCQELPQDIGEALCHLL 206
           PV  SRD QE+P +  + +  ++
Sbjct: 501 PVTNSRDTQEVPLEKAKQVLKII 523

Mus musculus (taxid: 10090)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)

Query: 68  LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
           L N R FIIKS +  +I  SI+  IW +       L+ A+   +  G + L+FSVN SG 
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472

Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
           F G A+M S V +     VWSQ     + W   F+VKW+ +  +P  +  H++   ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527

Query: 184 PVKISRDCQELPQDIGEALCHLL 206
           PV  SRD QE+P +  + +  ++
Sbjct: 528 PVTNSRDTQEVPLEKAKQVLKII 550

Pongo abelii (taxid: 9601)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)

Query: 68  LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
           L N R FIIKS +  +I  SI+  IW +       L+ A+   +  G + L+FSVN SG 
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472

Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
           F G A+M S V +     VWSQ     + W   F+VKW+ +  +P  +  H++   ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527

Query: 184 PVKISRDCQELPQDIGEALCHLL 206
           PV  SRD QE+P +  + +  ++
Sbjct: 528 PVTNSRDTQEVPLEKAKQVLKII 550

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
255537209	358	splicing factor yt521-B, putative [Ricin	0.908	0.913	0.706	1e-135
224054017	398	predicted protein [Populus trichocarpa]	0.925	0.836	0.689	1e-129
359474272	404	PREDICTED: uncharacterized protein LOC10	0.936	0.834	0.710	1e-129
297742631	306	unnamed protein product [Vitis vinifera]	0.811	0.954	0.731	1e-113
356497191	396	PREDICTED: YTH domain-containing protein	0.908	0.825	0.626	1e-108
297809507	359	hypothetical protein ARALYDRAFT_490016 [	0.9	0.902	0.606	1e-104
334186446	385	YT521-B-like protein [Arabidopsis thalia	0.905	0.846	0.599	1e-103
42566517	444	YT521-B-like protein [Arabidopsis thalia	0.905	0.734	0.599	1e-103
42572881	359	YT521-B-like protein [Arabidopsis thalia	0.9	0.902	0.603	1e-103
356540480	368	PREDICTED: YTH domain-containing protein	0.880	0.861	0.595	2e-97

>gi|255537209|ref|XP_002509671.1| splicing factor yt521-B, putative [Ricinus communis] gi|223549570|gb|EEF51058.1| splicing factor yt521-B, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/344 (70%), Positives = 279/344 (81%), Gaps = 17/344 (4%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSDT +ENASVVDSSVTE KHD+GN DDPES +YK +E   P + K  + GH   Q+EN
Sbjct: 1   MSSDTGRENASVVDSSVTEGKHDMGNFDDPESPTYKGDEDCYPFMVK--RTGHE--QVEN 56

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
           S+   KGKLYNTRYFIIKSLNH NIQLS+EK IWATQVMNEPILEEAFHNSGKVILIFS+
Sbjct: 57  SSLKKKGKLYNTRYFIIKSLNHHNIQLSVEKGIWATQVMNEPILEEAFHNSGKVILIFSI 116

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSGFFQGYAQMMS+VGWRRDN+WSQG  KNNPWGRSF+VKWL+LN LPFQKTLHLKNPL
Sbjct: 117 NMSGFFQGYAQMMSTVGWRRDNIWSQGCSKNNPWGRSFRVKWLQLNDLPFQKTLHLKNPL 176

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
           NDYKPVKISRDCQELP+DIGEALC L+DG +D+DG+     RDD+P KRP +EP CSLGD
Sbjct: 177 NDYKPVKISRDCQELPEDIGEALCELIDGDNDIDGM---LKRDDIPLKRPRMEPPCSLGD 233

Query: 240 EEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYH 299
           EEY+ PP+H+P  +TP+PY SFLYQH  G S F         A NLP ++ +SK SR+ H
Sbjct: 234 EEYNVPPMHIPWVRTPIPYSSFLYQHHAGASRFR--------AVNLPLSAGASKVSRMKH 285

Query: 300 SR-KGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMV 342
           S+  G+L+NLQV  D+ SR D WGLSA+SP AST+TEDDFLEM 
Sbjct: 286 SQVNGSLANLQVRNDMPSRSDAWGLSAESPHASTLTEDDFLEMT 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054017|ref|XP_002298082.1| predicted protein [Populus trichocarpa] gi|222845340|gb|EEE82887.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/345 (68%), Positives = 273/345 (79%), Gaps = 12/345 (3%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSD+AKENASVVDSSVTE KHD+GNSDDPES SYK NE   P +A+  KAGH   ++ N
Sbjct: 1   MSSDSAKENASVVDSSVTEWKHDMGNSDDPESPSYKGNEDGYPIMAE--KAGHD--RVGN 56

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
           S+ N K KL NTRYFIIKSLN  NIQLSIE  IWATQV NEPILEEAFHNSG+VILI+SV
Sbjct: 57  SSINKKRKLCNTRYFIIKSLNQHNIQLSIENGIWATQVRNEPILEEAFHNSGRVILIYSV 116

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSGFFQGYAQM+SSVGWR DN+WS+G+GK+NPWGRSFKVKWLRLN LPFQKTLHLKNPL
Sbjct: 117 NMSGFFQGYAQMISSVGWRHDNLWSEGSGKSNPWGRSFKVKWLRLNDLPFQKTLHLKNPL 176

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
           NDYKPVKISRDCQELP+DIGEALC L+DG+ D DG+     RDDLP KRPCI+PS   GD
Sbjct: 177 NDYKPVKISRDCQELPEDIGEALCELIDGERDTDGM---VKRDDLPMKRPCIDPSSYTGD 233

Query: 240 EEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQR--CGGDAENLPFTSMSSKFSRI 297
             Y  PPL +P G+TP PYPSFLYQ     S FHLA +   G    +   +S +SK +R+
Sbjct: 234 GVYTVPPLQMPWGRTPTPYPSFLYQQHDEASRFHLAHQGPTGAGFTDNALSSGASKVARM 293

Query: 298 YHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMV 342
             SR  N +NL++ C++ SR D WGLSA+SPLAST+T+DDFLEM 
Sbjct: 294 KQSR--NSTNLRIHCEMPSRTDIWGLSAESPLASTLTDDDFLEMT 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474272|ref|XP_002275532.2| PREDICTED: uncharacterized protein LOC100254803 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/349 (71%), Positives = 281/349 (80%), Gaps = 12/349 (3%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSDTAKENASVVDSSVT+ KHD+GN DDPESSSYKANE   PS  +E +  HS+  + N
Sbjct: 1   MSSDTAKENASVVDSSVTDWKHDMGNFDDPESSSYKANEDGYPSGPEEQR--HSHTGMLN 58

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
           S+ N KGKLY+TRYFIIKSLNH NIQLS+EK IWATQVMNEPILEEAFHNSGKVILIFSV
Sbjct: 59  SSANKKGKLYSTRYFIIKSLNHHNIQLSMEKGIWATQVMNEPILEEAFHNSGKVILIFSV 118

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSGFFQGYAQMMSSVGWRRDNVWSQG+G NNPWGRSFKVKWLRL+ LPFQKTLHLKNPL
Sbjct: 119 NMSGFFQGYAQMMSSVGWRRDNVWSQGSGGNNPWGRSFKVKWLRLHDLPFQKTLHLKNPL 178

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDV-DGIQTS-FHRDDLPAKRPCIEPSCSL 237
           NDYKPVKISRDCQEL Q+IGEALC LLDGK DV D ++ + F  DDLP +RP +EPSCSL
Sbjct: 179 NDYKPVKISRDCQELSQEIGEALCELLDGKTDVGDNLRKNDFSGDDLPPRRPFMEPSCSL 238

Query: 238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLA-QRCGGD--AENLPFTSMSSKF 294
             EEY+   +H+    T M YPS LYQH+   + FHLA QR  G    ENLP +S  SK 
Sbjct: 239 PGEEYNLSSMHMTW--TSMLYPSLLYQHKAEANRFHLAHQRSTGPFLPENLPISSGPSKV 296

Query: 295 SRIYHSR-KGNLSNLQVDCDLSSRYDFWGLSAD-SPLASTITEDDFLEM 341
           +R+ H R  GN +++QVD D+SS +D W +SA+ SPLAST+TEDD LEM
Sbjct: 297 TRVKHPRISGNFTSVQVDHDMSSGFDVWNMSAERSPLASTLTEDDILEM 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742631|emb|CBI34780.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/302 (73%), Positives = 245/302 (81%), Gaps = 10/302 (3%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSDTAKENASVVDSSVT+ KHD+GN DDPESSSYKANE   PS  +E +  HS+  + N
Sbjct: 1   MSSDTAKENASVVDSSVTDWKHDMGNFDDPESSSYKANEDGYPSGPEEQR--HSHTGMLN 58

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
           S+ N KGKLY+TRYFIIKSLNH NIQLS+EK IWATQVMNEPILEEAFHNSGKVILIFSV
Sbjct: 59  SSANKKGKLYSTRYFIIKSLNHHNIQLSMEKGIWATQVMNEPILEEAFHNSGKVILIFSV 118

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSGFFQGYAQMMSSVGWRRDNVWSQG+G NNPWGRSFKVKWLRL+ LPFQKTLHLKNPL
Sbjct: 119 NMSGFFQGYAQMMSSVGWRRDNVWSQGSGGNNPWGRSFKVKWLRLHDLPFQKTLHLKNPL 178

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDV-DGIQTS-FHRDDLPAKRPCIEPSCSL 237
           NDYKPVKISRDCQEL Q+IGEALC LLDGK DV D ++ + F  DDLP +RP +EPSCSL
Sbjct: 179 NDYKPVKISRDCQELSQEIGEALCELLDGKTDVGDNLRKNDFSGDDLPPRRPFMEPSCSL 238

Query: 238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLA-QRCGGD--AENLPFTSMSSKF 294
             EEY+   +H+    T M YPS LYQH+   + FHLA QR  G    ENLP +S  SK 
Sbjct: 239 PGEEYNLSSMHMTW--TSMLYPSLLYQHKAEANRFHLAHQRSTGPFLPENLPISSGPSKV 296

Query: 295 SR 296
           +R
Sbjct: 297 TR 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497191|ref|XP_003517446.1| PREDICTED: YTH domain-containing protein 1-like [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/345 (62%), Positives = 252/345 (73%), Gaps = 18/345 (5%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSD+AKENASVVDSSVTE ++D+GNSDDPESS YK NE+   + A   K GHS+GQ+ +
Sbjct: 1   MSSDSAKENASVVDSSVTEGRNDIGNSDDPESSGYKFNENINTTRAD--KGGHSHGQIGH 58

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
            T     K +N +YFIIKSLNHQNI LSIEK IWATQ+MNEPILEEAFHNSG VILIFSV
Sbjct: 59  PTGIGVEKWHNIKYFIIKSLNHQNIHLSIEKGIWATQIMNEPILEEAFHNSGSVILIFSV 118

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSG FQGYAQMMSS+G  RDNVWS+G GK+NPWGRSFKVKW+ LN LPF KTLHLKNPL
Sbjct: 119 NMSGSFQGYAQMMSSIGRGRDNVWSEGTGKSNPWGRSFKVKWMCLNDLPFHKTLHLKNPL 178

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
           NDYKPVKISRDCQEL  DIG ALC LLDGK+  D + TS  RD+   K        S+GD
Sbjct: 179 NDYKPVKISRDCQELSPDIGLALCELLDGKNYTDCLPTSLSRDEFSLKGLYANTPSSMGD 238

Query: 240 EEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLA-QRCGGD--AENLPFTSMSSKFSR 296
           E+ + PPLH      P+PY +  YQ+Q   +N+H   QR  G    E LP TS SS+ S 
Sbjct: 239 EDCNFPPLHTSW-SMPLPYSALFYQNQPEVNNYHSTNQRISGTMFTEILPTTSESSQVSG 297

Query: 297 IYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEM 341
           I  S+           D++S+ DFWGLS++SPLAST+TEDDFL+M
Sbjct: 298 IKRSK-----------DVASQSDFWGLSSESPLASTLTEDDFLDM 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809507|ref|XP_002872637.1| hypothetical protein ARALYDRAFT_490016 [Arabidopsis lyrata subsp. lyrata] gi|297318474|gb|EFH48896.1| hypothetical protein ARALYDRAFT_490016 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/343 (60%), Positives = 250/343 (72%), Gaps = 19/343 (5%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSDTAKENASVVDSS+T+ K D+GNSDDPESSS+++ E    S  +  +   S+ QLE+
Sbjct: 1   MSSDTAKENASVVDSSLTDWKQDIGNSDDPESSSHRSKEDHKLSKVEVERRNFSD-QLES 59

Query: 60  STDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFS 118
           S  N   K  Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIFS
Sbjct: 60  SNPNKNSKPGYQTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIFS 119

Query: 119 VNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNP 178
           VNMSGFFQGYA+M+S VGWRRD++WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKNP
Sbjct: 120 VNMSGFFQGYAEMLSPVGWRRDHIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKNP 179

Query: 179 LNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLG 238
           LNDYKPVKISRDCQELP+DIGEALC LLD     DG+  S  RDD   K+   EP  S G
Sbjct: 180 LNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKKSRAEPPSSSG 239

Query: 239 DEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIY 298
           DEEY+    +   G TPMPYP  +Y +Q   S FHLA + G          +SS++    
Sbjct: 240 DEEYN----NNLWGHTPMPYPPAVYANQDDLSRFHLAHQIG--------YGVSSEY---L 284

Query: 299 HSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEM 341
           H+  G  SN + + + S R++ W L  +SPLA+++T+DDFL+M
Sbjct: 285 HTSSG-ASNSRTEQEKSLRFNSWCLPLESPLANSLTDDDFLDM 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186446|ref|NP_001190703.1| YT521-B-like protein [Arabidopsis thaliana] gi|332657678|gb|AEE83078.1| YT521-B-like protein [Arabidopsis thaliana]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/347 (59%), Positives = 250/347 (72%), Gaps = 21/347 (6%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANE-HRCPSLAKEAKAGHSNGQLE 58
           MSSDTAKENASVVDSS+T+ K D+GNSDDPES+SY++ E H+   +  + +  +   QLE
Sbjct: 1   MSSDTAKENASVVDSSLTDWKQDLGNSDDPESTSYRSKEDHKLSKVDVDRR--NFPDQLE 58

Query: 59  NSTDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIF 117
           ++  N   K  Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIF
Sbjct: 59  SAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIF 118

Query: 118 SVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKN 177
           SVNMSGFFQGYA+M+S VGWRRD +WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKN
Sbjct: 119 SVNMSGFFQGYAEMLSPVGWRRDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKN 178

Query: 178 PLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSL 237
           PLNDYKPVKISRDCQELP+DIGEALC LLD     DG+  S  RDD   KR   EP  S 
Sbjct: 179 PLNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKRSRAEPPSSS 238

Query: 238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRI 297
           GD+EY+    +   G TPM YP  +Y +Q   S FHLAQ+ G          +S ++   
Sbjct: 239 GDDEYN----NNLWGHTPMSYPPTVYPNQDDLSRFHLAQQRG--------YGVSPEY--- 283

Query: 298 YHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLV 344
            H+  G  SN + + D S R++ W L  +SPLA+++T+DDFLEM L 
Sbjct: 284 LHTSPG-ASNSRTEQDKSLRFNSWCLPLESPLANSLTDDDFLEMCLA 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566517|ref|NP_192934.2| YT521-B-like protein [Arabidopsis thaliana] gi|332657676|gb|AEE83076.1| YT521-B-like protein [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/347 (59%), Positives = 251/347 (72%), Gaps = 21/347 (6%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANE-HRCPSLAKEAKAGHSNGQLE 58
           MSSDTAKENASVVDSS+T+ K D+GNSDDPES+SY++ E H+   +  + +  +   QLE
Sbjct: 1   MSSDTAKENASVVDSSLTDWKQDLGNSDDPESTSYRSKEDHKLSKVDVDRR--NFPDQLE 58

Query: 59  NSTDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIF 117
           ++  N   K  Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIF
Sbjct: 59  SAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIF 118

Query: 118 SVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKN 177
           SVNMSGFFQGYA+M+S VGWRRD +WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKN
Sbjct: 119 SVNMSGFFQGYAEMLSPVGWRRDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKN 178

Query: 178 PLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSL 237
           PLNDYKPVKISRDCQELP+DIGEALC LLD     DG+  S  RDD   KR   EP  S 
Sbjct: 179 PLNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKRSRAEPPSSS 238

Query: 238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRI 297
           GD+EY+    +   G TPM YP  +Y +Q   S FHLAQ+ G          +S ++   
Sbjct: 239 GDDEYN----NNLWGHTPMSYPPTVYPNQDDLSRFHLAQQRG--------YGVSPEY--- 283

Query: 298 YHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVLV 344
            H+  G  SN + + D S R++ W L  +SPLA+++T+DDFLEMV+ 
Sbjct: 284 LHTSPG-ASNSRTEQDKSLRFNSWCLPLESPLANSLTDDDFLEMVVA 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572881|ref|NP_974537.1| YT521-B-like protein [Arabidopsis thaliana] gi|4586102|emb|CAB40938.1| putative protein [Arabidopsis thaliana] gi|7267898|emb|CAB78240.1| putative protein [Arabidopsis thaliana] gi|50198805|gb|AAT70436.1| At4g11970 [Arabidopsis thaliana] gi|52421293|gb|AAU45216.1| At4g11970 [Arabidopsis thaliana] gi|332657677|gb|AEE83077.1| YT521-B-like protein [Arabidopsis thaliana]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 246/343 (71%), Gaps = 19/343 (5%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSDTAKENASVVDSS+T+ K D+GNSDDPES+SY++ E    S     +    + QLE+
Sbjct: 1   MSSDTAKENASVVDSSLTDWKQDLGNSDDPESTSYRSKEDHKLSKVDVDRRNFPD-QLES 59

Query: 60  STDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFS 118
           +  N   K  Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIFS
Sbjct: 60  AKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIFS 119

Query: 119 VNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNP 178
           VNMSGFFQGYA+M+S VGWRRD +WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKNP
Sbjct: 120 VNMSGFFQGYAEMLSPVGWRRDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKNP 179

Query: 179 LNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLG 238
           LNDYKPVKISRDCQELP+DIGEALC LLD     DG+  S  RDD   KR   EP  S G
Sbjct: 180 LNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKRSRAEPPSSSG 239

Query: 239 DEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIY 298
           D+EY+    +   G TPM YP  +Y +Q   S FHLAQ+ G          +S ++    
Sbjct: 240 DDEYN----NNLWGHTPMSYPPTVYPNQDDLSRFHLAQQRG--------YGVSPEY---L 284

Query: 299 HSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEM 341
           H+  G  SN + + D S R++ W L  +SPLA+++T+DDFLEM
Sbjct: 285 HTSPG-ASNSRTEQDKSLRFNSWCLPLESPLANSLTDDDFLEM 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540480|ref|XP_003538717.1| PREDICTED: YTH domain-containing protein 1-like [Glycine max]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 241/346 (69%), Gaps = 29/346 (8%)

Query: 1   MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLEN 59
           MSSD+AKENASVVDSSVTE ++D+GNSDDPESS YK  E+  P+ A   K GHS+GQ+ +
Sbjct: 1   MSSDSAKENASVVDSSVTEWRNDIGNSDDPESSGYKFKENINPTRAD--KGGHSHGQIGH 58

Query: 60  STDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
                  K +NT+YF+IKSLNHQNI LSIEK IWATQ+MNEPIL+EA+HNSG VILIFSV
Sbjct: 59  PAGIGVEKCHNTKYFVIKSLNHQNIHLSIEKGIWATQIMNEPILQEAYHNSGSVILIFSV 118

Query: 120 NMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPL 179
           NMSG FQGYAQMM+S+G  RDN WS+G GK+NPWGRSFKVKWL LN LPF KTLHLKNPL
Sbjct: 119 NMSGSFQGYAQMMTSIGRGRDNAWSEGTGKSNPWGRSFKVKWLCLNDLPFHKTLHLKNPL 178

Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
           NDYKPVKISRDCQEL  DIG ALC LLDGK+D DG+ T      L  +            
Sbjct: 179 NDYKPVKISRDCQELSPDIGLALCKLLDGKNDTDGLLTRGGLLLLQVQW----------- 227

Query: 240 EEYHKPPLH-VPLGKTPMPYPSFLYQHQGGPSNFHLA-QRCGGD--AENLPFTSMSSKFS 295
           E      LH +  G+ P    S  YQ+Q   + FH   QR  G    E LP TS SS+ S
Sbjct: 228 EMKTVTFLHCICCGQCPCLILSCFYQNQPEVNKFHSTNQRISGTMFTEILPTTSESSQVS 287

Query: 296 RIYHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEM 341
            I  S+           D++S+ DFWGLS++SPLAST+TEDDFL+M
Sbjct: 288 GIKRSK-----------DVASQSDFWGLSSESPLASTLTEDDFLDM 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2118046	444	AT4G11970 "AT4G11970" [Arabido	0.902	0.731	0.601	1e-100
TAIR|locus:2028175	631	CPSF30 "AT1G30460" [Arabidopsi	0.372	0.212	0.5	1.9e-31
UNIPROTKB|Q96MU7	727	YTHDC1 "YTH domain-containing	0.830	0.411	0.300	2e-26
RGD|621706	738	Ythdc1 "YTH domain containing	0.738	0.360	0.320	2.1e-26
UNIPROTKB|F1NS70	1339	YTHDC2 "Uncharacterized protei	0.480	0.129	0.423	1.6e-25
ZFIN|ZDB-GENE-041114-114	679	ythdc1 "YTH domain containing	0.666	0.353	0.338	1.6e-25
UNIPROTKB|F1RLG0	1151	YTHDC2 "Uncharacterized protei	0.488	0.152	0.393	5.1e-24
MGI|MGI:2448561	1445	Ythdc2 "YTH domain containing	0.488	0.121	0.393	7.1e-24
UNIPROTKB|E2QZR7	1376	YTHDC2 "Uncharacterized protei	0.488	0.127	0.393	8.4e-24
UNIPROTKB|F1MNU7	1429	YTHDC2 "Uncharacterized protei	0.486	0.122	0.384	8.9e-24

TAIR|locus:2118046 AT4G11970 "AT4G11970" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 208/346 (60%), Positives = 250/346 (72%)

Query:     1 MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANE-HRCPSLAKEAKAGHSNGQLE 58
             MSSDTAKENASVVDSS+T+ K D+GNSDDPES+SY++ E H+   +  + +  +   QLE
Sbjct:     1 MSSDTAKENASVVDSSLTDWKQDLGNSDDPESTSYRSKEDHKLSKVDVDRR--NFPDQLE 58

Query:    59 NSTDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIF 117
             ++  N   K  Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIF
Sbjct:    59 SAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIF 118

Query:   118 SVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKN 177
             SVNMSGFFQGYA+M+S VGWRRD +WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKN
Sbjct:   119 SVNMSGFFQGYAEMLSPVGWRRDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKN 178

Query:   178 PLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSL 237
             PLNDYKPVKISRDCQELP+DIGEALC LLD     DG+  S  RDD   KR   EP  S 
Sbjct:   179 PLNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKRSRAEPPSSS 238

Query:   238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRI 297
             GD+EY+        G TPM YP  +Y +Q   S FHLAQ+ G          +S ++   
Sbjct:   239 GDDEYNNNLW----GHTPMSYPPTVYPNQDDLSRFHLAQQRG--------YGVSPEY--- 283

Query:   298 YHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMVL 343
              H+  G  SN + + D S R++ W L  +SPLA+++T+DDFLEMV+
Sbjct:   284 LHTSPG-ASNSRTEQDKSLRFNSWCLPLESPLANSLTDDDFLEMVV 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028175 CPSF30 "AT1G30460" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 68/136 (50%), Positives = 89/136 (65%)

Query:    72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
             RYF++KS N +N +LS+++ +WATQ  NE  L EAF +   VILIFSVN +  FQG A+M
Sbjct:   238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297

Query:   132 MSSVG-WRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
              S +G +     W   +G    +GR+F VKWL+L  L F KT +L+NP N+  PVKISRD
Sbjct:   298 TSRIGGYIGGGNWKHEHGTAQ-YGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRD 356

Query:   191 CQELPQDIGEALCHLL 206
             CQEL   +GE L  LL
Sbjct:   357 CQELEPSVGEQLASLL 372

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003723 "RNA binding" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0006396 "RNA processing" evidence=RCA;IDA;TAS

GO:0004519 "endonuclease activity" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:1900363 "regulation of mRNA polyadenylation" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006397 "mRNA processing" evidence=RCA

UNIPROTKB|Q96MU7 YTHDC1 "YTH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 99/329 (30%), Positives = 146/329 (44%)

Query:     2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHS-- 53
             +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG    
Sbjct:   270 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 329

Query:    54 NGQLENS--------TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
             + +L +S        T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  
Sbjct:   330 HEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 389

Query:   106 AFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLR 163
             AF ++  VILIFSV  SG FQG+A++ S        + W    G +    G  FK+ W+ 
Sbjct:   390 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWIC 449

Query:   164 LNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT------ 217
                LPF K+ HL NP N++KPVKI RD QE+  + G  LC L    + +D  Q       
Sbjct:   450 RRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRH 509

Query:   218 --SFHRDDLPAKRPCI-EPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQG---GPSN 271
                 H       RP   EP   +G        +H    K  + YP   +Q  G    P  
Sbjct:   510 KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRY 569

Query:   272 FHLAQRCGGDAENLPFTSMSSKFSRIYHS 300
               + +R  G   ++      + + R +H+
Sbjct:   570 QEVDRRFSGVRRDVFLNGSYNDYVREFHN 598

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|621706 Ythdc1 "YTH domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 94/293 (32%), Positives = 133/293 (45%)

Query:     2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHS-- 53
             +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG    
Sbjct:   273 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 332

Query:    54 NGQLENS--------TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
             + +L +S        T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  
Sbjct:   333 HEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 392

Query:   106 AFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLR 163
             AF ++  VILIFSV  SG FQG+A++ S        + W    G +    G  FK+ W+ 
Sbjct:   393 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWIC 452

Query:   164 LNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT------ 217
                LPF K+ HL NP N++KPVKI RD QE+  + G  LC L    + +D  Q       
Sbjct:   453 RRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRH 512

Query:   218 --SFHRDDLPAKRPCI-EPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQG 267
                 H       RP   EP   +G        +H    K  + YP   +Q  G
Sbjct:   513 KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPG 565

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

UNIPROTKB|F1NS70 YTHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 78/184 (42%), Positives = 100/184 (54%)

Query:    26 SDDP-ESSSYKANEHRC-PSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQN 83
             SD+  + SS K+ +  C PS           G   + T + +  +   RYFI+KS N QN
Sbjct:  1152 SDEKSDQSSVKSTDSSCYPSPCVSPSPVSGKG---SKTPSPRLSM-PVRYFIMKSSNLQN 1207

Query:    84 IQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVW 143
             + +S +K IW+T   NE  L  AF  S  V LIFSV  SG FQG+A+M S +G  +   W
Sbjct:  1208 LDISQQKGIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARMSSEIGCEQSQCW 1267

Query:   144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALC 203
                 G     G  FKV+W+R  ++PFQ T HL NP ND K V+ISRD QEL   IGE L 
Sbjct:  1268 GS-TGL----GGVFKVEWIRKESIPFQFTHHLLNPWNDNKEVQISRDGQELEPQIGEQLL 1322

Query:   204 HLLD 207
              L D
Sbjct:  1323 KLWD 1326

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-041114-114 ythdc1 "YTH domain containing 1" [Danio rerio (taxid:7955)]

 Score = 298 (110.0 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 88/260 (33%), Positives = 127/260 (48%)

Query:     2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENST 61
             +SD+  E+ S  D      H    SD   S S K +E +  S  ++ +    N +L++  
Sbjct:   243 ASDSRSESVSFSDGESV--HSASGSD--ASGSEKKHE-KLSSSVRDVRKDRIN-KLKHI- 295

Query:    62 DNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNM 121
                   L   R+F+IKS NH+N+ L+  K +W+T  +NE  L  AF  +  V+LIFSV  
Sbjct:   296 ------LREARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRAARSVVLIFSVRE 349

Query:   122 SGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLRLNTLPFQKTLHLKNPL 179
             SG FQG+A++ S        + W    G N    G  FK+ W+    LPF KT HL NP 
Sbjct:   350 SGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLGGVFKIDWICRRELPFTKTAHLANPW 409

Query:   180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
             N++KPVKI RD QE+  + G  LC L    + +D  Q   H+  +  KR       S G 
Sbjct:   410 NEHKPVKIGRDGQEIEPECGTELCMLFPHDESIDLYQV-IHK--MRHKRRMHSEPRSRGR 466

Query:   240 EEYHKPPLHVPLGKT-PMPY 258
                H+ P+   +G+  P  Y
Sbjct:   467 LP-HREPVPRDMGRRRPEEY 485

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1RLG0 YTHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 5.1e-24, P = 5.1e-24
 Identities = 74/188 (39%), Positives = 98/188 (52%)

Query:    21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
             H   ++DD  + SS K+ +    PS  A  +      G    S   N       RYFI+K
Sbjct:   960 HPKRSADDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1015

Query:    78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
             S N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++M S +G 
Sbjct:  1016 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1075

Query:   138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
              +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD QEL   
Sbjct:  1076 EKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1130

Query:   198 IGEALCHL 205
             +GE L  L
Sbjct:  1131 VGEQLLQL 1138

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2448561 Ythdc2 "YTH domain containing 2" [Mus musculus (taxid:10090)]

 Score = 288 (106.4 bits), Expect = 7.1e-24, P = 7.1e-24
 Identities = 74/188 (39%), Positives = 98/188 (52%)

Query:    21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
             H   ++DD  + SS K+ +    PS  A  +      G    S   N       RYFI+K
Sbjct:  1254 HPKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1309

Query:    78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
             S N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++M S +G 
Sbjct:  1310 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1369

Query:   138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
              +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD QEL   
Sbjct:  1370 EKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1424

Query:   198 IGEALCHL 205
             +GE L  L
Sbjct:  1425 VGEQLLQL 1432

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2QZR7 YTHDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 8.4e-24, P = 8.4e-24
 Identities = 74/188 (39%), Positives = 98/188 (52%)

Query:    21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
             H   ++DD  + SS K+ +    PS  A  +      G    S   N       RYFI+K
Sbjct:  1185 HPKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1240

Query:    78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
             S N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++M S +G 
Sbjct:  1241 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1300

Query:   138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
              +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD QEL   
Sbjct:  1301 EKSQDWGSAG-----LGGVFKVEWVRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1355

Query:   198 IGEALCHL 205
             +GE L  L
Sbjct:  1356 VGEQLLQL 1363

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MNU7 YTHDC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 8.9e-24, P = 8.9e-24
 Identities = 73/190 (38%), Positives = 97/190 (51%)

Query:    16 SVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFI 75
             S  ++ D  +    +SS+Y +     PS    AK   S     N            RYFI
Sbjct:  1242 STEDRSDQSSVKSTDSSNYPS-PCASPSPPSSAKGSKSPSPKPNMP---------IRYFI 1291

Query:    76 IKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV 135
             +KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++M S +
Sbjct:  1292 MKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEI 1351

Query:   136 GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELP 195
             G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD QEL 
Sbjct:  1352 GREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELE 1406

Query:   196 QDIGEALCHL 205
               +GE L  L
Sbjct:  1407 PQVGEQLLQL 1416

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.9252.1 hypothetical protein (339 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
pfam04146	135	pfam04146, YTH, YT521-B-like domain	3e-57

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  181 bits (463), Expect = 3e-57
 Identities = 61/136 (44%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 72  RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
           R+FIIKS N  N+ LSI+  +WA+   N   L +AF  +  V LIFSVN SG F GYA+M
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAEPVYLIFSVNKSGKFCGYARM 60

Query: 132 MSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDC 191
            S + +         +  +  WG  FKV+WL +  LPF +  HLKNP N+ KPV ISRD 
Sbjct: 61  TSPIDFDSTANS--QDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTISRDG 118

Query: 192 QELPQDIGEALCHLLD 207
           QE+  +IGE L  +  
Sbjct: 119 QEIEPEIGEELLKIFK 134

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PRK00809	144	hypothetical protein; Provisional	96.79
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	85.51

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=1.5e-71  Score=540.56  Aligned_cols=318  Identities=33%  Similarity=0.416  Sum_probs=287.8

Q ss_pred             CCcccccccceeecCceee-ecCCCCCCCCCCccCCCCCCCCcchhhhhhcCCCCCcCCCCccc-cCCCCCcceEEEEEe
Q 018178            1 MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDN-NKGKLYNTRYFIIKS   78 (360)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~-~~~~~~~d~p~s~~y~~~~~~~~~~~~~~~~~~~~~q~~n~~~~-~~~~~~~aRFFIIKS   78 (360)
                      |.+||++|++++++.++|. ..+.+++++|++..|+..++.-+..++.++ +.+..|...-... .......+|||||||
T Consensus         1 ~~~dt~~~~~~~~~~~~t~~~q~l~~~~~~~~~~~rk~e~~~~~~v~~~~-~~s~~q~~s~~~~~ss~~~~~~rYFIiKS   79 (441)
T KOG1902|consen    1 NDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIS-GSSASESYADQTSKLKYVLQDARYFIIKS   79 (441)
T ss_pred             CcccchhhhhhhcccccchhhhhhccCCCCCCCcccccccccccCCCccc-ccCccccchhhcccccccCCceEEEEEec
Confidence            6899999999999999999 999999999999999999999999988884 4777777543333 333578999999999


Q ss_pred             CChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCCc-cccCCCCCCCCCCCce
Q 018178           79 LNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDN-VWSQGNGKNNPWGRSF  157 (360)
Q Consensus        79 ~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~~-~W~~~~g~~~~wgg~F  157 (360)
                      +|++||.+|+++|||+||+.||++||.||+++..||||||||+||||||||+|+|+|++.+++ +|.++.|.++.||++|
T Consensus        80 ~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q~~W~~~~G~~a~~G~~F  159 (441)
T KOG1902|consen   80 NNHENVELSVQKGVWSTQPSNEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQIHWVLPAGMSAMLGGVF  159 (441)
T ss_pred             CCccceeeehhcceeccccccHHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCCccccccCCcccccCcee
Confidence            999999999999999999999999999999999999999999999999999999999999986 8999888789999999


Q ss_pred             eeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCCC
Q 018178          158 KVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSL  237 (360)
Q Consensus       158 ~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~~~~~~~l~~sf~~~~~~~~r~~~~~~~~~  237 (360)
                      +|+||++++|||+++.||+|||||||||+|+||||||++++|+|||.||+..++.+ +++.-++++.+.++-+.  |  -
T Consensus       160 kVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~p~~e-l~~~s~~~~~kr~~~~A--p--~  234 (441)
T KOG1902|consen  160 KVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPDPSID-LYQVSHKMRHKRRMHSA--P--R  234 (441)
T ss_pred             eEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCCcchh-hhhhhHHHHHhhhhhcC--C--c
Confidence            99999999999999999999999999999999999999999999999999999999 66766777777776666  4  4


Q ss_pred             CCcccCCCCCcccCCCCCCCCCccccccCCCCCchhhhhccCCCCcccccCCCCccccceeeccCCCCCccccccCCCCC
Q 018178          238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQVDCDLSSR  317 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (360)
                      |+.|        ||+++||.|++..|.++....+|| ++-+|.+++++++++++++              ++..+|..-|
T Consensus       235 sr~E--------p~~~~p~~~~~~~~ped~d~~~~~-~~p~G~~p~~~h~~Pg~~~--------------~~r~q~~~~r  291 (441)
T KOG1902|consen  235 SRGE--------PSRREPVRDVGRRRPEDYDIHNSR-KKPRGDYPPEFHQRPGYLK--------------DPRYQEVDRR  291 (441)
T ss_pred             cCCC--------cccCCcccCccccCcccchhhhhh-hCCCCCCCcccccCCCcCC--------------Cccccccccc
Confidence            4544        999999999999999999999999 3455666999999999887              6777899999


Q ss_pred             ccccccCCCCCCccCCCccccceeeeehhc
Q 018178          318 YDFWGLSADSPLASTITEDDFLEMVLVPVF  347 (360)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (360)
                      +.-|+|.-++|++..+|.+||++|.--|+.
T Consensus       292 f~g~~L~v~~Pg~~~~y~~~f~nm~p~p~~  321 (441)
T KOG1902|consen  292 FSGVRLDVFLPGSYNDYVREFHNMGPPPPW  321 (441)
T ss_pred             cCceecccccCcccccccchhhhcCCCccc
Confidence            999999999999999999999999765553

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=9.4e-52  Score=359.25  Aligned_cols=139  Identities=53%  Similarity=0.888  Sum_probs=115.3

Q ss_pred             cceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCC-CccccCCCC
Q 018178           70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRR-DNVWSQGNG  148 (360)
Q Consensus        70 ~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~-~~~W~~~~g  148 (360)
                      ++|||||||+|++||++|+++|||+|+++|+++|++||+++++||||||||+||+|||||+|+|+++... ...|..+. 
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~w~~~~-   79 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESRNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPFWQQDS-   79 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-EEEEEEETTTSEEEEEEEEECECCSSS------SS--
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCCCEEEEEeecCcceEEEEEEEccCCCCcccCccccccc-
Confidence            5899999999999999999999999999999999999999999999999999999999999999998885 47795431 


Q ss_pred             CCCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcCC
Q 018178          149 KNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGK  209 (360)
Q Consensus       149 ~~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~~  209 (360)
                      ...+|+|.|+|+||++++|||+.++||+||+|+||||+++||||||++++|++||+||+++
T Consensus        80 ~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~  140 (140)
T PF04146_consen   80 SSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ  140 (140)
T ss_dssp             SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred             cccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence            2369999999999999999999999999999999999999999999999999999999863

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=1.6e-42  Score=351.18  Aligned_cols=149  Identities=32%  Similarity=0.577  Sum_probs=143.9

Q ss_pred             CCcceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhc------CCcEEEEEEecCCCceeEEEEeeccCCCCCC-
Q 018178           68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN------SGKVILIFSVNMSGFFQGYAQMMSSVGWRRD-  140 (360)
Q Consensus        68 ~~~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~------s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~-  140 (360)
                      ..++|||||||++++|||+||+|+|||+|.++|++|+.||++      .++||||||||.||+|||+|+|++++++.++ 
T Consensus       296 ~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~  375 (487)
T KOG1901|consen  296 YSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDM  375 (487)
T ss_pred             cccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceeccccc
Confidence            569999999999999999999999999999999999999986      3589999999999999999999999999986 


Q ss_pred             ccccCCCCCCCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcCCCCccccccccc
Q 018178          141 NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFH  220 (360)
Q Consensus       141 ~~W~~~~g~~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~~~~~~~l~~sf~  220 (360)
                      .+|+++     +|.|.|.|+|+.|+|||+..++||+.+.||||||+.+||+|||..+.|.++|+||..+...++||+||.
T Consensus       376 ~~WqQD-----KW~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~  450 (487)
T KOG1901|consen  376 EYWQQD-----KWSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFG  450 (487)
T ss_pred             chhhhc-----ccceecceeeEEEeeCCccceeEEEeecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeeccccc
Confidence            799985     999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q 018178          221 R  221 (360)
Q Consensus       221 ~  221 (360)
                      -
T Consensus       451 ~  451 (487)
T KOG1901|consen  451 F  451 (487)
T ss_pred             c
Confidence            4

>PRK00809 hypothetical protein; Provisional

Probab=96.79  E-value=0.015  Score=51.87  Aligned_cols=128  Identities=13%  Similarity=0.236  Sum_probs=86.5

Q ss_pred             eEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEec------CCCceeEEEEeeccCCCCCCccccC
Q 018178           72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWSQ  145 (360)
Q Consensus        72 RFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN------~Sg~FqGyArM~S~i~~~~~~~W~~  145 (360)
                      +|.|+=+ +.+|+..++++|+|......-.-|.+  -+.+..+|||+-+      .-+.|.|.|++++..-...+.+|.+
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~--Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~t~~~p~   78 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK--VKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDSTPIFPA   78 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh--CCCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCCccCCCc
Confidence            6777777 89999999999999997665555554  4567888888887      5799999999998764444455532


Q ss_pred             CC-CCCCCCCCceeeEEEEeee--CCCCcc----cCccCCCCCCCCe-eeCCCCcccChhHHHHHHH
Q 018178          146 GN-GKNNPWGRSFKVKWLRLNT--LPFQKT----LHLKNPLNDYKPV-KISRDCQELPQDIGEALCH  204 (360)
Q Consensus       146 ~~-g~~~~wgg~F~VeWL~v~d--LPF~~~----~HLrNplNenKPV-k~sRDGQEIe~e~G~qLck  204 (360)
                      .. ....++--..+|+++...+  ||++.+    .-|+|.-.=...+ ..++  .||+.+-.+.|++
T Consensus        79 ~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~~  143 (144)
T PRK00809         79 EPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIEE  143 (144)
T ss_pred             cccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHhc
Confidence            10 0113444678899998888  777765    2224431111333 5666  8888877766653

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=85.51  E-value=1.7  Score=37.58  Aligned_cols=127  Identities=10%  Similarity=0.182  Sum_probs=62.1

Q ss_pred             eEEEEEeC----ChhhH---HHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEec-CCCceeEEEEeeccCCCCCCcc-
Q 018178           72 RYFIIKSL----NHQNI---QLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN-MSGFFQGYAQMMSSVGWRRDNV-  142 (360)
Q Consensus        72 RFFIIKS~----n~eNI---~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN-~Sg~FqGyArM~S~i~~~~~~~-  142 (360)
                      +|+|+|+.    ..+++   ......|+|-.+..+   ..+..+. +.-+|||.-+ +.+.|.|.|++++......... 
T Consensus         1 ~YWl~~~~P~~~~~~~~~~~~~~~~~gv~~~~~~~---~l~~mk~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~~   76 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDLEHWGVTVWDGVRNYQARK---NLKRMKP-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAFD   76 (143)
T ss_dssp             -EEEEEEBTTTSHHHHHHHHSEEECHTEEEHHHHH---HHHC--T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGTS
T ss_pred             CEEEEEeCCcccCHHHhcccceEEEcCEeehhhhh---hhhcCCC-CCEEEEEEcCCCCCEEEEEEEEeccccCCCcccc
Confidence            69999997    54444   233344455444322   2223333 5566666666 6799999999998753322221 


Q ss_pred             ----ccCCCCCCCCCCCceeeEEEEeee--CCCCcccCccCCCCCCCCeeeC-CCCcccChhHHHHHHHH
Q 018178          143 ----WSQGNGKNNPWGRSFKVKWLRLNT--LPFQKTLHLKNPLNDYKPVKIS-RDCQELPQDIGEALCHL  205 (360)
Q Consensus       143 ----W~~~~g~~~~wgg~F~VeWL~v~d--LPF~~~~HLrNplNenKPVk~s-RDGQEIe~e~G~qLckL  205 (360)
                          |-...  .+......+|+++..-+  |+...++.. ..+.+..-++.. .--.+|+++.-..|++|
T Consensus        77 ~~~~~~~~~--~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen   77 PDSPYYDPK--SNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             TTSTTBTTT--SCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             ccccCcCCc--cCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence                11110  11234567888887555  444555321 001111222222 22356777777777664

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		2e-25
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		2e-24

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 71  TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
            RYFI+KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG FQG+++
Sbjct: 8   VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 67
Query: 131 MMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
           M S +G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V+ISRD
Sbjct: 68  MSSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRD 122
Query: 191 CQELPQDIGEALCHLLD 207
            QEL   +GE L  L +
Sbjct: 123 GQELEPQVGEQLLQLWE 139

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 58  ENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIF 117
           ++ T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  AF ++  VILIF
Sbjct: 13  KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIF 72
Query: 118 SVNMSGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLRLNTLPFQKTLHL 175
           SV  SG FQG+A++ S        + W    G +    G  FK+ W+    LPF K+ HL
Sbjct: 73  SVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHL 132
Query: 176 KNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT 217
            NP N++KPVKI RD QE+  + G  LC L    + +D  Q 
Sbjct: 133 TNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQV 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
2yu6_A	141	YTH domain-containing protein 2; structural genomi	2e-54
2yud_A	180	YTH domain-containing protein 1; structure genomic	2e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  174 bits (442), Expect = 2e-54
 Identities = 62/142 (43%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 66  GKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFF 125
                 RYFI+KS N +N+++S +K IW+T   NE  L  AF  S  V L+FSV  SG F
Sbjct: 3   SGSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHF 62

Query: 126 QGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPV 185
           QG+++M S +G  +   W          G  FKV+W+R  +LPFQ   HL NP ND K V
Sbjct: 63  QGFSRMSSEIGREKSQDWGS-----AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKV 117

Query: 186 KISRDCQELPQDIGEALCHLLD 207
           +ISRD QEL   +GE L  L +
Sbjct: 118 QISRDGQELEPQVGEQLLQLWE 139

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  166 bits (420), Expect = 2e-50
 Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 59  NSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFS 118
           + T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  AF ++  VILIFS
Sbjct: 14  DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 73

Query: 119 VNMSGFFQGYAQMMSSVGWRRD-NVW-SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLK 176
           V  SG FQG+A++ S          W           G  FK+ W+    LPF K+ HL 
Sbjct: 74  VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 133

Query: 177 NPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVD 213
           NP N++KPVKI RD QE+  + G  LC L    + +D
Sbjct: 134 NPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESID 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 60/423 (14%), Positives = 109/423 (25%), Gaps = 129/423 (30%)

Query: 10  ASVV-DSSVTEKHD-------VGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQ-LENS 60
             V     V  K D       + N + PE+   +  +     +     +   +   ++  
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 61  TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN 120
             + + +L   R    K   +    L +   +   +         AF+ S K IL+ +  
Sbjct: 227 IHSIQAEL--RRLLKSKPYENC---LLVLLNVQNAKAW------NAFNLSCK-ILLTTRF 274

Query: 121 MSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWL--RLNTLPFQKTLHLKNP 178
                      +S+      ++            +S  +K+L  R   LP +      NP
Sbjct: 275 KQ-----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NP 327

Query: 179 L---------------NDY----------KPVKISRDCQE-------------LPQD--I 198
                            D             ++ S +  E              P    I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 199 GEALCHLL---DGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD---------------- 239
              L  L+     K DV  +    H+  L  K+P  E + S+                  
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALH 446

Query: 240 ----EEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFS 295
               + Y+ P         P     + Y H G     HL        E+       + F 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKN-----IEH---PERMTLFR 494

Query: 296 RIY-----------HS-----RKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITED--D 337
            ++           H        G++ N          Y    +  + P    +     D
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKYERLVNAILD 550

Query: 338 FLE 340
           FL 
Sbjct: 551 FLP 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	97.32
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	96.75

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=1e-53  Score=372.65  Aligned_cols=138  Identities=45%  Similarity=0.722  Sum_probs=132.9

Q ss_pred             CCCCcceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCCccccC
Q 018178           66 GKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQ  145 (360)
Q Consensus        66 ~~~~~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~~~W~~  145 (360)
                      +...++|||||||++++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|++++.+...|.+
T Consensus         3 ~~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~~   82 (141)
T 2yu6_A            3 SGSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS   82 (141)
T ss_dssp             CCCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC
T ss_pred             CCCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCccccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999977788986


Q ss_pred             CCCCCCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcC
Q 018178          146 GNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDG  208 (360)
Q Consensus       146 ~~g~~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~  208 (360)
                           .+|+|.|+|+||++++|||+.++||+||+|+||||+++||||||++++|++||+||+.
T Consensus        83 -----~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~  140 (141)
T 2yu6_A           83 -----AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER  140 (141)
T ss_dssp             -----SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred             -----cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence                 5999999999999999999999999999999999999999999999999999999975

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=2.7e-52  Score=376.71  Aligned_cols=147  Identities=41%  Similarity=0.687  Sum_probs=137.0

Q ss_pred             CCcceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCC-ccccCC
Q 018178           68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRD-NVWSQG  146 (360)
Q Consensus        68 ~~~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~-~~W~~~  146 (360)
                      ..++|||||||++++||++|++|||||||++|+++|++||+++++||||||||+||+|||||+|+|+++.... ..|..+
T Consensus        23 ~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~  102 (180)
T 2yud_A           23 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLP  102 (180)
T ss_dssp             TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCC
T ss_pred             cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCcccccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999987654 678754


Q ss_pred             CCC-CCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcCCCCccc
Q 018178          147 NGK-NNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDG  214 (360)
Q Consensus       147 ~g~-~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~~~~~~~  214 (360)
                      .+. ..+|+|.|+|+||++++|||..++||+||||+||||+++||||||++++|++||+||..+++++.
T Consensus       103 ~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~~  171 (180)
T 2yud_A          103 AGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDL  171 (180)
T ss_dssp             SSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSCS
T ss_pred             CccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCccH
Confidence            322 35799999999999999999999999999999999999999999999999999999999988874

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=97.32  E-value=0.0021  Score=55.65  Aligned_cols=131  Identities=15%  Similarity=0.259  Sum_probs=85.4

Q ss_pred             eEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCC--------CceeEEEEeeccCCCCCCccc
Q 018178           72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVW  143 (360)
Q Consensus        72 RFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~S--------g~FqGyArM~S~i~~~~~~~W  143 (360)
                      +|.|+|| +.+|+...++.|+|-. .+..+...++- +.+..+|||+-+..        ..|.|+|++++.+-...+.+|
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~m-k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t~~~   78 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRV-KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIF   78 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTC-CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCS
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhC-CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCCccC
Confidence            5999999 8999999999999977 55444444433 45677788876665        899999999986543333333


Q ss_pred             cCCCCCCCCCCCceeeEEEEeeeCCCCcccC----ccCCCCCCCCeeeCCCCcccChhHHHHHHHHh
Q 018178          144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLH----LKNPLNDYKPVKISRDCQELPQDIGEALCHLL  206 (360)
Q Consensus       144 ~~~~g~~~~wgg~F~VeWL~v~dLPF~~~~H----LrNplNenKPVk~sRDGQEIe~e~G~qLckLF  206 (360)
                      .+..-.....--..+|+++.+..+|+..+..    |+|+-+=+..+ .-+--++|+++..+.||+.|
T Consensus        79 ~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m  144 (145)
T 2hd9_A           79 KPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL  144 (145)
T ss_dssp             CCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred             CCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence            2210000122234678999999999886532    33321111222 02337999999999999875

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=96.75  E-value=0.0044  Score=53.69  Aligned_cols=129  Identities=15%  Similarity=0.296  Sum_probs=83.6

Q ss_pred             ceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEec------CCCceeEEEEeeccCCCCCCcccc
Q 018178           71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWS  144 (360)
Q Consensus        71 aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN------~Sg~FqGyArM~S~i~~~~~~~W~  144 (360)
                      -+|.|+|+ +.+++...++.|+|-. .+.-+...++-+ .+.-+|||...      .-..|.|+|++++..-...+.+|.
T Consensus         4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk-~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp   80 (147)
T 2p5d_A            4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVK-VGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFK   80 (147)
T ss_dssp             CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCC-TTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSC
T ss_pred             ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCC-CCCEEEEEEecccCCCCCCCEEEEEEEEecccccCCcccCc
Confidence            47999999 6899999999999976 444444444433 45666667332      345899999999865333333332


Q ss_pred             CCCC-CCCCCCCceeeEEEEe--eeCCCCccc----CccCC--CCCCCCeeeCCCCcccChhHHHHHHHH
Q 018178          145 QGNG-KNNPWGRSFKVKWLRL--NTLPFQKTL----HLKNP--LNDYKPVKISRDCQELPQDIGEALCHL  205 (360)
Q Consensus       145 ~~~g-~~~~wgg~F~VeWL~v--~dLPF~~~~----HLrNp--lNenKPVk~sRDGQEIe~e~G~qLckL  205 (360)
                      ...- ..++.--..+|+++..  ..||+..++    ++++.  |.+ .-++.+  -++|+++..+.||++
T Consensus        81 ~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~  147 (147)
T 2p5d_A           81 PTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN  147 (147)
T ss_dssp             CBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred             CccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence            2100 0123335789999988  888888765    22232  333 224666  899999999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	97.19

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=0.0017  Score=54.13  Aligned_cols=129  Identities=16%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             EEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCC--------CceeEEEEeeccCCCCCCcccc
Q 018178           73 YFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVWS  144 (360)
Q Consensus        73 FFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~S--------g~FqGyArM~S~i~~~~~~~W~  144 (360)
                      |+|+=+ +.+|+..+++.|+|.......+.|++  -+.+.-++||+....        ++|-|.+++++.+-...+.+|.
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~r--ikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d~t~i~~   79 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSR--VKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIFK   79 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTT--CCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCSC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhh--CCCCCEEEEEeCccccCCCcccccEEEEEEEEeccceeccccccc
Confidence            666666 79999999999999997655544443  245678888885433        4799999999887666677886


Q ss_pred             CCCCCCCCCCCceeeEEEEeeeCCCCc----ccCccCCCCCCCCeeeCCCC-cccChhHHHHHHHHh
Q 018178          145 QGNGKNNPWGRSFKVKWLRLNTLPFQK----TLHLKNPLNDYKPVKISRDC-QELPQDIGEALCHLL  206 (360)
Q Consensus       145 ~~~g~~~~wgg~F~VeWL~v~dLPF~~----~~HLrNplNenKPVk~sRDG-QEIe~e~G~qLckLF  206 (360)
                      ........+.-.++|+|+.+.++|++.    +.-++|+-+=  ....-|.| .||+.+-++.|-++|
T Consensus        80 ~~~~~~~~~P~R~~v~~~~~~ev~i~~l~~~L~fi~~k~~W--~~y~~r~g~~~I~~~D~~lI~~~l  144 (145)
T d2hd9a1          80 PHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRW--SMHFFGKAMRELPEEDYKLIEKLL  144 (145)
T ss_dssp             CTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTG--GGGTTTCSEEEECHHHHHHHHHHC
T ss_pred             ccccCCceEEEEEEeEEeecccccHHHHHhHHHhhcCchhh--hHHHhcCCceecCHHHHHHHHHHh
Confidence            542222333346899999999999885    4556665321  12233444 479888888776654