Citrus Sinensis ID: 018198
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| O22609 | 439 | Protease Do-like 1, chlor | yes | no | 0.654 | 0.535 | 0.571 | 2e-73 | |
| Q9LU10 | 448 | Protease Do-like 8, chlor | no | no | 0.571 | 0.457 | 0.451 | 1e-42 | |
| Q9SEL7 | 323 | Protease Do-like 5, chlor | no | no | 0.554 | 0.616 | 0.441 | 3e-38 | |
| E1V4H2 | 474 | Probable periplasmic seri | yes | no | 0.479 | 0.362 | 0.420 | 4e-32 | |
| P05676 | 406 | Uncharacterized serine pr | no | no | 0.484 | 0.428 | 0.411 | 1e-31 | |
| P73940 | 416 | Putative serine protease | N/A | no | 0.454 | 0.391 | 0.436 | 8e-31 | |
| Q2SL36 | 469 | Probable periplasmic seri | yes | no | 0.459 | 0.351 | 0.384 | 8e-31 | |
| P0A3Z5 | 513 | Probable periplasmic seri | no | no | 0.732 | 0.512 | 0.335 | 2e-30 | |
| P0C114 | 513 | Probable periplasmic seri | no | no | 0.732 | 0.512 | 0.335 | 2e-30 | |
| Q2YMX6 | 513 | Probable periplasmic seri | no | no | 0.732 | 0.512 | 0.335 | 2e-30 |
| >sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 186/257 (72%), Gaps = 22/257 (8%)
Query: 122 SSLEPFFLPCS-------------GVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVW 168
S+++PFFL C+ V+S FV S P KLQ DEL T+R+F+EN SVV+
Sbjct: 75 SAVKPFFLLCTSVALSFSLFAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVY 134
Query: 169 IGNLGIREDQSETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225
I NL +R+D + L +GSG+GF+WD+ GHIVTNYHVI GAS ++V+ +DQ+TF A+
Sbjct: 135 ITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAK 194
Query: 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISAL 285
VVG DQ D+AVL IDAP ++LRPI V VSADL VG+K++AIG+P G T TTGVIS L
Sbjct: 195 VVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGL 254
Query: 286 DREIP----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFAL 339
REI GR IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++
Sbjct: 255 RREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSI 314
Query: 340 PIDTVRGIVDQLVKFSR 356
P+DTV GIVDQLV+F +
Sbjct: 315 PVDTVGGIVDQLVRFGK 331
|
Serine protease that is required at high temperature. May be involved in the degradation of damaged proteins. In vivo, can degrade beta-casein. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 137/226 (60%), Gaps = 21/226 (9%)
Query: 152 ELETIRIFEENISSVVWIGNLGIREDQSET---EFLRGSGAGFLWDQDGHIVTNYHVICG 208
E +++FE+N SVV I ++ +R T E G+G+G +WD G+IVTNYHVI
Sbjct: 116 EGRIVQLFEKNTYSVVNIFDVTLRPQLKMTGVVEIPEGNGSGVVWDGQGYIVTNYHVIGN 175
Query: 209 ASTVKVSFSD-------------QSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVS 255
A + S D Q F ++VG D+ DLAVL +DAP L+PI V S
Sbjct: 176 ALSRNPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKVDAPETLLKPIKVGQS 235
Query: 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI---PGRLIQGVIQIDASVNLGNSGGP 312
L+VG++ AIG+P G+ T T GVIS L+R+I G I G IQ DA++N GNSGGP
Sbjct: 236 NSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTDAAINPGNSGGP 295
Query: 313 LLDSSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
LLDS G+LIG+NT F +G +G+GFA+P TV IV QL++FS+
Sbjct: 296 LLDSKGNLIGINTAIFTQTGTSAGVGFAIPSSTVLKIVPQLIQFSK 341
|
Probable serine protease. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 132/224 (58%), Gaps = 25/224 (11%)
Query: 156 IRIFEENISSVVWIGNLGIREDQS-------ETEFLRGSGAGFLWDQDGHIVTNYHVICG 208
+ +F++ SVV+I + + + S E + G+G+GF+WD+ GHIVTNYHVI
Sbjct: 92 VNLFQKTSPSVVYIEAIELPKTSSGDILTDEENGKIEGTGSGFVWDKLGHIVTNYHVIAK 151
Query: 209 AST-------VKVSFSD-QSTFYAQ---VVGHDQVNDLAVLHIDAPNHELRPIHVSVSAD 257
+T KVS D + T +++ +VG D NDLAVL I+ EL P+ + S D
Sbjct: 152 LATDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPDNDLAVLKIETEGRELNPVVLGTSND 211
Query: 258 LRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLL 314
LRVG+ +AIG+P G+ T T GV+S L REIP G+ I IQ DA +N GNSGGPLL
Sbjct: 212 LRVGQSCFAIGNPYGYENTLTIGVVSGLGREIPSPNGKSISEAIQTDADINSGNSGGPLL 271
Query: 315 DSSGSLIGVNTFI----TSGAFSGIGFALPIDTVRGIVDQLVKF 354
DS G IGVNT SG SG+ FA+PIDTV V L+ +
Sbjct: 272 DSYGHTIGVNTATFTRKGSGMSSGVNFAIPIDTVVRTVPYLIVY 315
|
Probable serine protease. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|E1V4H2|DEGPL_HALED Probable periplasmic serine endoprotease DegP-like OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) GN=mucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 178 QSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAV 237
Q +E R G+GF+ +DG+I+TN HV+ GA + VS +D A++VG D D+AV
Sbjct: 90 QGHSEERRSLGSGFIISEDGYIMTNAHVVEGADEILVSLNDGRELKAELVGADTKTDVAV 149
Query: 238 LHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGV 297
L +DA N L + + S DL+VG+ + AIG P G + T+G+ISA++R +P +
Sbjct: 150 LKVDADN--LPTLTLGDSEDLKVGQWVAAIGSPFGLDHSVTSGIISAINRTLPRDVYVPF 207
Query: 298 IQIDASVNLGNSGGPLLDSSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQL 351
IQ D ++N GNSGGPL + G +IG+N+ F SG + G+ FA+PID + DQL
Sbjct: 208 IQTDVAINPGNSGGPLFNLDGEVIGINSQIFTRSGGYMGLSFAIPIDVAMDVADQL 263
|
Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) (taxid: 768066) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 0 EC: 7 |
| >sp|P05676|Y938_SYNP6 Uncharacterized serine protease syc0938_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0938_d PE=3 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
+ E RG G+GF+ D +G I+TN HV+ A V+V+ D F +V G D V DLA++
Sbjct: 116 ARQEVQRGQGSGFVVDGNGLIMTNAHVVANADQVRVTLRDGREFTGRVRGADSVTDLALV 175
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-----IPGRL 293
+D L + S+++ VG AIG+PLG T T G++S+L R IP +
Sbjct: 176 EVDTKGERLPTARIGNSSNVEVGDWAIAIGNPLGLDNTVTLGIVSSLGRRSSAVGIPDKR 235
Query: 294 IQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353
+ IQ DA +N GNSGGPL++S G +IG+NT I +GIGFA+P++T + I QL+K
Sbjct: 236 LD-FIQTDAVINPGNSGGPLVNSRGEVIGINTAIRQAPGAGIGFAIPVNTAKQIETQLLK 294
|
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P73940|HHOB_SYNY3 Putative serine protease HhoB OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hhoB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 111/172 (64%), Gaps = 9/172 (5%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
+G+G+GF+ DG ++TN HV+ GASTVKV+ D S +V+G D + D+AV+ ++A N
Sbjct: 132 QGTGSGFILSSDGEVLTNAHVVEGASTVKVTLKDGSVLEGKVMGIDTMTDVAVVKVEAEN 191
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-----IPGRLIQGVIQ 299
L + + S L+ G+ AIG+PLG T T G+ISAL R +P + ++ IQ
Sbjct: 192 --LPVVEIGQSDRLQPGEWAIAIGNPLGLDNTVTVGIISALGRSSSEVGVPDKRVR-FIQ 248
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQL 351
DA++N GNSGGPLL++ G +IGVNT I + A G+GFA+PI T + + + L
Sbjct: 249 TDAAINPGNSGGPLLNAKGEVIGVNTAIRADA-QGLGFAIPIQTAQNVAENL 299
|
A putative protease, its function overlaps that of the related putative proteases HtrA and HhoA. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q2SL36|DEGPL_HAHCH Probable periplasmic serine endoprotease DegP-like OS=Hahella chejuensis (strain KCTC 2396) GN=mucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
+ +G+GF+ +DG+I+TN HV+ GA + V D+ A+++G D+ +DLAVL ++A
Sbjct: 89 QSTGSGFIVSKDGYILTNNHVVAGADEIFVRLMDRRELTAKLIGSDEKSDLAVLKVEA-- 146
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASV 304
+L +++ S++L+VG+ + AIG P G+ +T T G++SA R +P IQ D ++
Sbjct: 147 DDLPVLNLGKSSELKVGEWVVAIGSPFGFEYTVTAGIVSAKGRSLPNENYVPFIQTDVAI 206
Query: 305 NLGNSGGPLLDSSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQL 351
N GNSGGPL + G ++G+N+ + SG F G+ FA+PID +++QL
Sbjct: 207 NPGNSGGPLFNLEGEVVGINSQIYTRSGGFMGVSFAIPIDVALDVMNQL 255
|
Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. Hahella chejuensis (strain KCTC 2396) (taxid: 349521) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 0 EC: 7 |
| >sp|P0A3Z5|DEGPL_BRUSU Probable periplasmic serine endoprotease DegP-like OS=Brucella suis biovar 1 (strain 1330) GN=htrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 17/280 (6%)
Query: 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEPFFLPCSGVDSTPD 139
LN+ RA V +V++++ V ++V +S+ P F G D PD
Sbjct: 35 LNEARAEAVHVTPPPQAGFADLVEKVRPAVVSVRVKKDVQETSNRGPQFFGPPGFDQLPD 94
Query: 140 FVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLR--GSGAGFLWDQDG 197
P K R F N + ++ R G+GF+ +DG
Sbjct: 95 ---GHPLK------RFFRDFGMEPRGDSRSDNRRGKANKPRPGHERPVAQGSGFVISEDG 145
Query: 198 HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSAD 257
++VTN HV+ V D + A+++G D DLAVL I+AP + ++V+ D
Sbjct: 146 YVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKF--VYVAFGDD 203
Query: 258 --LRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLD 315
+RVG + A+G+P G T T+G++SA R+I IQIDA+VN GNSGGP D
Sbjct: 204 NKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAGPYDDFIQIDAAVNKGNSGGPAFD 263
Query: 316 SSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQLVK 353
SG +IG+NT F SG GI FA+P T + +VDQL+K
Sbjct: 264 LSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIK 303
|
Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. Brucella suis biovar 1 (strain 1330) (taxid: 204722) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 0 EC: 7 |
| >sp|P0C114|DEGPL_BRUAB Probable periplasmic serine endoprotease DegP-like OS=Brucella abortus biovar 1 (strain 9-941) GN=htrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 17/280 (6%)
Query: 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEPFFLPCSGVDSTPD 139
LN+ RA V +V++++ V ++V +S+ P F G D PD
Sbjct: 35 LNEARAEAVHVTPPPQAGFADLVEKVRPAVVSVRVKKDVQETSNRGPQFFGPPGFDQLPD 94
Query: 140 FVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLR--GSGAGFLWDQDG 197
P K R F N + ++ R G+GF+ +DG
Sbjct: 95 ---GHPLK------RFFRDFGMEPRGDSRSDNRRGKANKPRPGHERPVAQGSGFVISEDG 145
Query: 198 HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSAD 257
++VTN HV+ V D + A+++G D DLAVL I+AP + ++V+ D
Sbjct: 146 YVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKF--VYVAFGDD 203
Query: 258 --LRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLD 315
+RVG + A+G+P G T T+G++SA R+I IQIDA+VN GNSGGP D
Sbjct: 204 NKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAGPYDDFIQIDAAVNKGNSGGPAFD 263
Query: 316 SSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQLVK 353
SG +IG+NT F SG GI FA+P T + +VDQL+K
Sbjct: 264 LSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIK 303
|
Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. Brucella abortus biovar 1 (strain 9-941) (taxid: 262698) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 0 EC: 7 |
| >sp|Q2YMX6|DEGPL_BRUA2 Probable periplasmic serine endoprotease DegP-like OS=Brucella abortus (strain 2308) GN=htrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 17/280 (6%)
Query: 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEPFFLPCSGVDSTPD 139
LN+ RA V +V++++ V ++V +S+ P F G D PD
Sbjct: 35 LNEARAEAVHVTPPPQAGFADLVEKVRPAVVSVRVKKDVQETSNRGPQFFGPPGFDQLPD 94
Query: 140 FVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLR--GSGAGFLWDQDG 197
P K R F N + ++ R G+GF+ +DG
Sbjct: 95 ---GHPLK------RFFRDFGMEPRGDSRSDNRRGKANKPRPGHERPVAQGSGFVISEDG 145
Query: 198 HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSAD 257
++VTN HV+ V D + A+++G D DLAVL I+AP + ++V+ D
Sbjct: 146 YVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKF--VYVAFGDD 203
Query: 258 --LRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLD 315
+RVG + A+G+P G T T+G++SA R+I IQIDA+VN GNSGGP D
Sbjct: 204 NKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAGPYDDFIQIDAAVNKGNSGGPAFD 263
Query: 316 SSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVDQLVK 353
SG +IG+NT F SG GI FA+P T + +VDQL+K
Sbjct: 264 LSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIK 303
|
Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. Brucella abortus (strain 2308) (taxid: 359391) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 0 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 2565436 | 437 | DegP protease precursor [Arabidopsis tha | 0.654 | 0.537 | 0.571 | 8e-72 | |
| 22331378 | 439 | protease Do-like 1 [Arabidopsis thaliana | 0.654 | 0.535 | 0.571 | 1e-71 | |
| 357495999 | 432 | Serine-type peptidase [Medicago truncatu | 0.626 | 0.520 | 0.611 | 2e-71 | |
| 297818398 | 433 | hypothetical protein ARALYDRAFT_484581 [ | 0.654 | 0.542 | 0.577 | 5e-71 | |
| 270342123 | 424 | serine-type peptidase [Phaseolus vulgari | 0.640 | 0.542 | 0.594 | 6e-71 | |
| 359493091 | 428 | PREDICTED: protease Do-like 1, chloropla | 0.640 | 0.537 | 0.602 | 6e-71 | |
| 449450105 | 439 | PREDICTED: protease Do-like 1, chloropla | 0.660 | 0.539 | 0.589 | 1e-70 | |
| 449483759 | 438 | PREDICTED: protease Do-like 1, chloropla | 0.660 | 0.541 | 0.589 | 1e-70 | |
| 356511668 | 426 | PREDICTED: protease Do-like 1, chloropla | 0.640 | 0.539 | 0.598 | 2e-70 | |
| 363807808 | 431 | uncharacterized protein LOC100783304 [Gl | 0.640 | 0.533 | 0.589 | 1e-69 |
| >gi|2565436|gb|AAC39436.1| DegP protease precursor [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 186/257 (72%), Gaps = 22/257 (8%)
Query: 122 SSLEPFFLPCS-------------GVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVW 168
S+++PFFL C+ V+S FV S P KLQ DEL T+R+F+EN SVV+
Sbjct: 73 SAVKPFFLLCTSVALSFSLFAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVY 132
Query: 169 IGNLGIREDQSETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225
I NL +R+D + L +GSG+GF+WD+ GHIVTNYHVI GAS ++V+ +DQ+TF A+
Sbjct: 133 ITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAK 192
Query: 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISAL 285
VVG DQ D+AVL IDAP ++LRPI V VSADL VG+K++AIG+P G T TTGVIS L
Sbjct: 193 VVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGL 252
Query: 286 DREIP----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFAL 339
REI GR IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++
Sbjct: 253 RREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSI 312
Query: 340 PIDTVRGIVDQLVKFSR 356
P+DTV GIVDQLV+F +
Sbjct: 313 PVDTVGGIVDQLVRFGK 329
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331378|ref|NP_189431.2| protease Do-like 1 [Arabidopsis thaliana] gi|51338737|sp|O22609.2|DEGP1_ARATH RecName: Full=Protease Do-like 1, chloroplastic; Flags: Precursor gi|11994498|dbj|BAB02539.1| DegP protease precursor [Arabidopsis thaliana] gi|14517500|gb|AAK62640.1| K16N12.18/K16N12.18 [Arabidopsis thaliana] gi|21360531|gb|AAM47381.1| At3g27925/K16N12.18 [Arabidopsis thaliana] gi|332643860|gb|AEE77381.1| protease Do-like 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 186/257 (72%), Gaps = 22/257 (8%)
Query: 122 SSLEPFFLPCS-------------GVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVW 168
S+++PFFL C+ V+S FV S P KLQ DEL T+R+F+EN SVV+
Sbjct: 75 SAVKPFFLLCTSVALSFSLFAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVY 134
Query: 169 IGNLGIREDQSETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225
I NL +R+D + L +GSG+GF+WD+ GHIVTNYHVI GAS ++V+ +DQ+TF A+
Sbjct: 135 ITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAK 194
Query: 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISAL 285
VVG DQ D+AVL IDAP ++LRPI V VSADL VG+K++AIG+P G T TTGVIS L
Sbjct: 195 VVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGL 254
Query: 286 DREIP----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFAL 339
REI GR IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++
Sbjct: 255 RREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSI 314
Query: 340 PIDTVRGIVDQLVKFSR 356
P+DTV GIVDQLV+F +
Sbjct: 315 PVDTVGGIVDQLVRFGK 331
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495999|ref|XP_003618288.1| Serine-type peptidase [Medicago truncatula] gi|355493303|gb|AES74506.1| Serine-type peptidase [Medicago truncatula] gi|388511665|gb|AFK43894.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/234 (61%), Positives = 177/234 (75%), Gaps = 9/234 (3%)
Query: 132 SGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL---RGSG 188
S VDS FV + P KLQ DEL T+R+F+EN SVV+I NL +++D + L +GSG
Sbjct: 91 SNVDSASAFVVTAPRKLQTDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSG 150
Query: 189 AGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELR 248
+GF+WD+DGHIVTNYHVI GAS ++V+ +DQST+ A+VVG DQ D+AVL +DAP +LR
Sbjct: 151 SGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLR 210
Query: 249 PIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI----PGRLIQGVIQIDASV 304
PI V VSADL VG+K+YAIG+P G T TTGVIS L REI GR IQ VIQ DA++
Sbjct: 211 PIPVGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAI 270
Query: 305 NLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQLVKF +
Sbjct: 271 NPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGK 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818398|ref|XP_002877082.1| hypothetical protein ARALYDRAFT_484581 [Arabidopsis lyrata subsp. lyrata] gi|297322920|gb|EFH53341.1| hypothetical protein ARALYDRAFT_484581 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 18/253 (7%)
Query: 122 SSLEPFFLPCSGVD-------STPD--FVGSQPCKLQMDELETIRIFEENISSVVWIGNL 172
S+++PFFL C+ V ++P FV S P KLQ DEL T+R+F+EN SVV+I NL
Sbjct: 73 SAVKPFFLLCTSVALSFSLFAASPSSAFVVSTPRKLQTDELATVRLFQENTPSVVYITNL 132
Query: 173 GIREDQSETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGH 229
+R+D + L +GSG+GF+WD+ GHIVTNYHVI GAS ++V+ +DQ+TF A+VVG
Sbjct: 133 AVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGF 192
Query: 230 DQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI 289
DQ D+AVL IDAP ++LRPI + VSADL VG+K++AIG+P G T TTGVIS L REI
Sbjct: 193 DQDKDVAVLRIDAPKNKLRPIPIGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREI 252
Query: 290 P----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDT 343
GR IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DT
Sbjct: 253 SSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDT 312
Query: 344 VRGIVDQLVKFSR 356
V GIVDQLV+F +
Sbjct: 313 VGGIVDQLVRFGK 325
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|270342123|gb|ACZ74706.1| serine-type peptidase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/239 (59%), Positives = 179/239 (74%), Gaps = 9/239 (3%)
Query: 127 FFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL-- 184
F L S DS FV + P KLQ DEL T+R+F+EN SVV+I NL +++D + L
Sbjct: 78 FTLLVSNADSAAAFVVTSPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEV 137
Query: 185 -RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
+GSG+GF+WD++G+IVTNYHVI GAS +KV+ +DQST+ A+VVG DQ D+AVLH++AP
Sbjct: 138 PQGSGSGFVWDKEGNIVTNYHVIRGASDLKVTLADQSTYDAKVVGFDQDKDVAVLHVEAP 197
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQ 299
+LRPI + VSADL VG+K+YAIG+P G T TTGVIS L REI GR IQ VIQ
Sbjct: 198 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 257
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQLVKF +
Sbjct: 258 TDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGK 316
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493091|ref|XP_002267510.2| PREDICTED: protease Do-like 1, chloroplastic-like [Vitis vinifera] gi|296081154|emb|CBI18180.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 178/239 (74%), Gaps = 9/239 (3%)
Query: 127 FFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL-- 184
F L + VDS FV + P KLQ DEL T+R+F+EN SVV+I NL R+D + L
Sbjct: 82 FSLFVADVDSASAFVVTAPRKLQNDELATVRLFQENTPSVVYITNLAARQDAFTLDVLEV 141
Query: 185 -RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
+GSG+GF+WD+DGHIVTNYHVI GAS ++V+ +DQ+T+ A+VVG DQ D+AVL +DAP
Sbjct: 142 PQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQTTYDARVVGFDQDKDVAVLRVDAP 201
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQ 299
+LRPI V VSADL VG+K+YAIG+P G T TTGVIS L REI GR IQ VIQ
Sbjct: 202 KEKLRPIPVGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 261
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
DA++N GNSGGPLLDSSGSLIG+NT I SGA SG+GF++P+DTV GIVDQLV+F +
Sbjct: 262 TDAAINPGNSGGPLLDSSGSLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVRFGK 320
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450105|ref|XP_004142804.1| PREDICTED: protease Do-like 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/246 (58%), Positives = 182/246 (73%), Gaps = 9/246 (3%)
Query: 120 SSSSLEPFFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQS 179
S+S L F L + VD FV + P KLQ DEL T+R+F+EN SVV+I NL +R+D
Sbjct: 86 STSVLLSFALFVTDVDPAVAFVVTTPRKLQTDELATVRLFQENTPSVVYITNLAVRQDAF 145
Query: 180 ETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLA 236
+ L +GSG+GF+WD+DGHIVTNYHVI GAS ++V+ +DQ+TF A+VVG DQ D+A
Sbjct: 146 TLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVA 205
Query: 237 VLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GR 292
VL IDAP +LRPI V +SADL VG+K++AIG+P G T TTGVIS L REI GR
Sbjct: 206 VLSIDAPKDKLRPIPVGISADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGR 265
Query: 293 LIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQ 350
IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQ
Sbjct: 266 PIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQ 325
Query: 351 LVKFSR 356
LV+F +
Sbjct: 326 LVRFGK 331
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483759|ref|XP_004156682.1| PREDICTED: protease Do-like 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/246 (58%), Positives = 182/246 (73%), Gaps = 9/246 (3%)
Query: 120 SSSSLEPFFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQS 179
S+S L F L + VD FV + P KLQ DEL T+R+F+EN SVV+I NL +R+D
Sbjct: 85 STSVLLSFALFVTDVDPAVAFVVTTPRKLQTDELATVRLFQENTPSVVYITNLAVRQDAF 144
Query: 180 ETEFL---RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLA 236
+ L +GSG+GF+WD+DGHIVTNYHVI GAS ++V+ +DQ+TF A+VVG DQ D+A
Sbjct: 145 TLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVA 204
Query: 237 VLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GR 292
VL IDAP +LRPI V +SADL VG+K++AIG+P G T TTGVIS L REI GR
Sbjct: 205 VLSIDAPKDKLRPIPVGISADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGR 264
Query: 293 LIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQ 350
IQ VIQ DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQ
Sbjct: 265 PIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQ 324
Query: 351 LVKFSR 356
LV+F +
Sbjct: 325 LVRFGK 330
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511668|ref|XP_003524545.1| PREDICTED: protease Do-like 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/239 (59%), Positives = 176/239 (73%), Gaps = 9/239 (3%)
Query: 127 FFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL-- 184
F L S DS FV + P KLQ DEL T+R+F+EN SVV+I NL +++D + L
Sbjct: 80 FTLLLSDADSAAAFVVTSPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEV 139
Query: 185 -RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
+GSG+GF+WD++GHIVTNYHVI GAS +KV+ +DQST A VVG DQ D+AVL +DAP
Sbjct: 140 PQGSGSGFVWDKEGHIVTNYHVIRGASDLKVTLADQSTLDAIVVGFDQDKDVAVLRVDAP 199
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI----PGRLIQGVIQ 299
+LRPI + VSADL VG+K+YAIG+P G T TTGVIS L REI GR IQ VIQ
Sbjct: 200 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 259
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
DA++N GNSGGPLLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQLVKF +
Sbjct: 260 TDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVKFGK 318
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807808|ref|NP_001242692.1| uncharacterized protein LOC100783304 [Glycine max] gi|255641306|gb|ACU20930.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/239 (58%), Positives = 175/239 (73%), Gaps = 9/239 (3%)
Query: 127 FFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL-- 184
F L S DS FV + P KLQ DEL T+R+F+EN SVV+I NL +++D + L
Sbjct: 85 FTLLLSPADSAAAFVVTSPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEV 144
Query: 185 -RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
+GSG+GF+WD++GHIVTNYHVI GAS +KV+ +DQST+ A VVG DQ D+AVL +DAP
Sbjct: 145 PQGSGSGFVWDKEGHIVTNYHVIRGASDLKVTLADQSTYDANVVGFDQDKDVAVLRVDAP 204
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQ 299
+LRPI + VSAD VG+K+YAIG+P G T TTGVIS L REI GR IQ VIQ
Sbjct: 205 KDKLRPIPIGVSADPLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 264
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
DA++N GNSGGP LDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQLVKF +
Sbjct: 265 TDAAINPGNSGGPPLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGK 323
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2086420 | 439 | DEG1 "degradation of periplasm | 0.637 | 0.521 | 0.542 | 2.5e-58 | |
| UNIPROTKB|Q607N4 | 374 | MCA1725 "Putative serine prote | 0.637 | 0.612 | 0.399 | 6.8e-40 | |
| TAIR|locus:2151916 | 448 | DEG8 "degradation of periplasm | 0.559 | 0.448 | 0.405 | 4.7e-32 | |
| TAIR|locus:2124509 | 323 | DEG5 "degradation of periplasm | 0.476 | 0.529 | 0.433 | 1e-29 | |
| UNIPROTKB|E1V4H2 | 474 | mucD "Probable periplasmic ser | 0.479 | 0.362 | 0.375 | 6.9e-26 | |
| TIGR_CMR|SO_3942 | 450 | SO_3942 "serine protease, HtrA | 0.490 | 0.391 | 0.373 | 4.3e-24 | |
| TIGR_CMR|SPO_1625 | 478 | SPO_1625 "periplasmic serine p | 0.462 | 0.347 | 0.390 | 4.6e-24 | |
| UNIPROTKB|P72780 | 394 | hhoA "Putative serine protease | 0.462 | 0.421 | 0.393 | 5.3e-24 | |
| UNIPROTKB|Q9KUF5 | 456 | VC_0566 "Protease DO" [Vibrio | 0.493 | 0.388 | 0.366 | 6.1e-24 | |
| TIGR_CMR|VC_0566 | 456 | VC_0566 "protease DO" [Vibrio | 0.493 | 0.388 | 0.366 | 6.1e-24 |
| TAIR|locus:2086420 DEG1 "degradation of periplasmic proteins 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 129/238 (54%), Positives = 163/238 (68%)
Query: 128 FLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL--- 184
F V+S FV S P KLQ DEL T+R+F+EN SVV+I NL +R+D + L
Sbjct: 94 FAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVP 153
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
+GSG+GF+WD+ GHIVTNYHVI GAS ++V+ +DQ+TF A+VVG DQ D+AVL IDAP
Sbjct: 154 QGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPK 213
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQI 300
++LRPI V VSADL VG+K++AIG+P G T TTGVIS L REI GR IQ VIQ
Sbjct: 214 NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQT 273
Query: 301 DASVNXXXXXXXXXXXXXXXIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
DA++N IG+NT I SGA SG+GF++P+DTV GIVDQLV+F +
Sbjct: 274 DAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK 331
|
|
| UNIPROTKB|Q607N4 MCA1725 "Putative serine protease" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 95/238 (39%), Positives = 141/238 (59%)
Query: 128 FLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL--- 184
F S D P + + +L ++E T+ +FE++ +SVV+I L D L
Sbjct: 31 FQAASARDVAPRPISPRG-ELALEERATVELFEKSKNSVVYISTLQQVMDPWTRNVLSIP 89
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
RG+G+GF+WD+ GH+VTNYHV+ GAS V +D + A +VG + +DLAVL ID
Sbjct: 90 RGTGSGFIWDEAGHVVTNYHVVEGASGATVKLADGRDYRAALVGVSKAHDLAVLRIDVGQ 149
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQID 301
P+ + VS DL+VG+K++AIG+P G ++ TTG++SALDR + G I+ +IQ D
Sbjct: 150 GIPSPLPIGVSHDLKVGQKVFAIGNPFGLDWSLTTGIVSALDRSLTEETGVTIEHLIQTD 209
Query: 302 ASVNXXXXXXXXXXXXXXXIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSRY 357
A++N +G+NT I SGAFSG+GFA+P+DTV +V QL+ +Y
Sbjct: 210 AAINPGNSGGPLLDSAGRLVGINTAIYSPSGAFSGVGFAVPVDTVNRVVPQLIGRGQY 267
|
|
| TAIR|locus:2151916 DEG8 "degradation of periplasmic proteins 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 90/222 (40%), Positives = 125/222 (56%)
Query: 156 IRIFEENISSVVWIGNLGIREDQSET---EFLRGSGAGFLWDQDGHIVTNYHVICGAST- 211
+++FE+N SVV I ++ +R T E G+G+G +WD G+IVTNYHVI A +
Sbjct: 120 VQLFEKNTYSVVNIFDVTLRPQLKMTGVVEIPEGNGSGVVWDGQGYIVTNYHVIGNALSR 179
Query: 212 ----------VKVSFSD--QSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLR 259
V + SD Q F ++VG D+ DLAVL +DAP L+PI V S L+
Sbjct: 180 NPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKVDAPETLLKPIKVGQSNSLK 239
Query: 260 VGKKIYAIGHPLGWSFTCTTGVISALDREI---PGRLIQGVIQIDASVNXXXXXXXXXXX 316
VG++ AIG+P G+ T T GVIS L+R+I G I G IQ DA++N
Sbjct: 240 VGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTDAAINPGNSGGPLLDS 299
Query: 317 XXXXIGVNT--FITSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT F +G +G+GFA+P TV IV QL++FS+
Sbjct: 300 KGNLIGINTAIFTQTGTSAGVGFAIPSSTVLKIVPQLIQFSK 341
|
|
| TAIR|locus:2124509 DEG5 "degradation of periplasmic proteins 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 82/189 (43%), Positives = 106/189 (56%)
Query: 184 LRGSGAGFLWDQDGHIVTNYHVIC-------GASTVKVSFSD-QSTFYAQ---VVGHDQV 232
+ G+G+GF+WD+ GHIVTNYHVI G KVS D + T +++ +VG D
Sbjct: 127 IEGTGSGFVWDKLGHIVTNYHVIAKLATDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPD 186
Query: 233 NDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-- 290
NDLAVL I+ EL P+ + S DLRVG+ +AIG+P G+ T T GV+S L REIP
Sbjct: 187 NDLAVLKIETEGRELNPVVLGTSNDLRVGQSCFAIGNPYGYENTLTIGVVSGLGREIPSP 246
Query: 291 -GRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FIT--SGAFSGIGFALPIDTVR 345
G+ I IQ DA +N IGVNT F SG SG+ FA+PIDTV
Sbjct: 247 NGKSISEAIQTDADINSGNSGGPLLDSYGHTIGVNTATFTRKGSGMSSGVNFAIPIDTVV 306
Query: 346 GIVDQLVKF 354
V L+ +
Sbjct: 307 RTVPYLIVY 315
|
|
| UNIPROTKB|E1V4H2 mucD "Probable periplasmic serine endoprotease DegP-like" [Halomonas elongata DSM 2581 (taxid:768066)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 6.9e-26, P = 6.9e-26
Identities = 66/176 (37%), Positives = 99/176 (56%)
Query: 178 QSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAV 237
Q +E R G+GF+ +DG+I+TN HV+ GA + VS +D A++VG D D+AV
Sbjct: 90 QGHSEERRSLGSGFIISEDGYIMTNAHVVEGADEILVSLNDGRELKAELVGADTKTDVAV 149
Query: 238 LHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGV 297
L +DA N L + + S DL+VG+ + AIG P G + T+G+ISA++R +P +
Sbjct: 150 LKVDADN--LPTLTLGDSEDLKVGQWVAAIGSPFGLDHSVTSGIISAINRTLPRDVYVPF 207
Query: 298 IQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSGAFSGIGFALPIDTVRGIVDQL 351
IQ D ++N IG+N+ F SG + G+ FA+PID + DQL
Sbjct: 208 IQTDVAINPGNSGGPLFNLDGEVIGINSQIFTRSGGYMGLSFAIPIDVAMDVADQL 263
|
|
| TIGR_CMR|SO_3942 SO_3942 "serine protease, HtrA/DegQ/DegS family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 68/182 (37%), Positives = 102/182 (56%)
Query: 176 EDQSETEFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVND 234
++Q + RG G+G + D D G+IVTN HVI GA ++V D A+++G D +D
Sbjct: 80 QEQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLHDGREVKAKLIGTDSESD 139
Query: 235 LAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG-RL 293
+A+L I+A N L I S S +LRVG AIG+P G T T+G++SAL R G +
Sbjct: 140 IALLQIEAKN--LVAIKTSDSDELRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLGIEM 197
Query: 294 IQGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQL 351
++ IQ DA++N IG+NT I + G GIGFA+P + V+ ++ Q+
Sbjct: 198 LENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPNGGNVGIGFAIPANMVKNLIAQI 257
Query: 352 VK 353
+
Sbjct: 258 AE 259
|
|
| TIGR_CMR|SPO_1625 SPO_1625 "periplasmic serine protease, DO/DeqQ family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 4.6e-24, P = 4.6e-24
Identities = 66/169 (39%), Positives = 93/169 (55%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
+G G+GF+ D +G+IVTN HV+ GA V V SD F AQVVG D + DLA+L I+A
Sbjct: 99 QGLGSGFILDSEGYIVTNNHVVDGADRVTVRLSDDREFTAQVVGTDPLTDLALLRIEA-G 157
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASV 304
L + + S +RVG+ + A+G+P G S T TTG++SA R I IQ DA++
Sbjct: 158 EALPAVSLGDSDAIRVGEDVVAVGNPFGLSSTVTTGIVSAKGRNISDGPYAEFIQTDAAI 217
Query: 305 NXXXXXXXXXXXXXXXIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQL 351
N +GVN+ I SG G+GFA+ + V ++ L
Sbjct: 218 NKGNSGGPLFNMAGQVVGVNSVIYSPSGGSVGLGFAVTSNIVDHVISDL 266
|
|
| UNIPROTKB|P72780 hhoA "Putative serine protease HhoA" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 68/173 (39%), Positives = 96/173 (55%)
Query: 184 LRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
+ G G+GF+ D G I+TN HV+ GAS V V+ D TF QV G D+V DLAV+ I+
Sbjct: 108 IAGQGSGFIIDNSGIILTNAHVVDGASKVVVTLRDGRTFDGQVRGTDEVTDLAVVKIEPQ 167
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-----IPGRLIQGVI 298
L + S++L+VG A+G+P+G T T G+IS L R IP + ++ I
Sbjct: 168 GSALPVAPLGTSSNLQVGDWAIAVGNPVGLDNTVTLGIISTLGRSAAQAGIPDKRVE-FI 226
Query: 299 QIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVRGIVDQL 351
Q DA++N IG+NT I + A +GIGFA+PID + I + L
Sbjct: 227 QTDAAINPGNSGGPLLNARGEVIGINTAIRADA-TGIGFAIPIDQAKAIQNTL 278
|
|
| UNIPROTKB|Q9KUF5 VC_0566 "Protease DO" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 6.1e-24, P = 6.1e-24
Identities = 67/183 (36%), Positives = 104/183 (56%)
Query: 176 EDQSETEFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVND 234
E E F RG G+G + + D G++VTNYHVI GA ++V D F A++VG D+++D
Sbjct: 82 EQLQERPF-RGLGSGVIINADKGYVVTNYHVINGAEKIRVKLYDGREFDAELVGGDEMSD 140
Query: 235 LAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRL 293
+A+L ++ + L I ++ S LRVG AIG+P G T T+G++SAL R +
Sbjct: 141 VALLKLNKAKN-LTEIRIADSDKLRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLNIEN 199
Query: 294 IQGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFIT--SGAFSGIGFALPIDTVRGIVDQL 351
+ IQ DA++N IG+NT I +G GIGFA+P + ++ + DQ+
Sbjct: 200 FENFIQTDAAINSGNSGGALVNLNGELIGINTAILGPNGGNVGIGFAIPSNMMKNLTDQI 259
Query: 352 VKF 354
++F
Sbjct: 260 LEF 262
|
|
| TIGR_CMR|VC_0566 VC_0566 "protease DO" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 6.1e-24, P = 6.1e-24
Identities = 67/183 (36%), Positives = 104/183 (56%)
Query: 176 EDQSETEFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVND 234
E E F RG G+G + + D G++VTNYHVI GA ++V D F A++VG D+++D
Sbjct: 82 EQLQERPF-RGLGSGVIINADKGYVVTNYHVINGAEKIRVKLYDGREFDAELVGGDEMSD 140
Query: 235 LAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRL 293
+A+L ++ + L I ++ S LRVG AIG+P G T T+G++SAL R +
Sbjct: 141 VALLKLNKAKN-LTEIRIADSDKLRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLNIEN 199
Query: 294 IQGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFIT--SGAFSGIGFALPIDTVRGIVDQL 351
+ IQ DA++N IG+NT I +G GIGFA+P + ++ + DQ+
Sbjct: 200 FENFIQTDAAINSGNSGGALVNLNGELIGINTAILGPNGGNVGIGFAIPSNMMKNLTDQI 259
Query: 352 VKF 354
++F
Sbjct: 260 LEF 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.691 |
| 3rd Layer | 2.2.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.2.1.6 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | DEGP1 | DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase; Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. ; Serine protease that is required at high temperature. May be involved in the degradation of damaged proteins. In vivo, can degrade beta-casein (439 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | VAR2 | VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding; Metal [...] (695 aa) | • | • | 0.909 | ||||||
 | FTSH8 | FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding; encodes a FtsH prot [...] (685 aa) | • | • | 0.898 | ||||||
 | FTSH1 | FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase; encodes an FTSH pro [...] (716 aa) | • | • | 0.889 | ||||||
 | NPQ4 | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding; Encoding PSII-S ( [...] (265 aa) | • | • | • | 0.843 | |||||
 | VAR1 | VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase; VAR1 contains a conserv [...] (704 aa) | • | • | 0.837 | ||||||
 | PSBO2 | PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding; Encodes a protein which i [...] (331 aa) | • | • | 0.820 | ||||||
 | PSBO1 | PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding; Encodes a protein wh [...] (332 aa) | • | • | 0.812 | ||||||
 | PTAC16 | PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16); binding / catalytic; PLASTID TRANSCRIPTIONALLY AC [...] (510 aa) | • | • | • | 0.805 | |||||
 | PETC | PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from cy [...] (229 aa) | • | • | • | 0.796 | |||||
 | STN7 | STN7 (Stt7 homolog STN7); kinase/ protein kinase; STN7 protein kinase; required for state trans [...] (562 aa) | • | • | 0.789 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| TIGR02037 | 428 | TIGR02037, degP_htrA_DO, periplasmic serine protea | 4e-52 | |
| COG0265 | 347 | COG0265, DegQ, Trypsin-like serine proteases, typi | 6e-43 | |
| TIGR02038 | 351 | TIGR02038, protease_degS, periplasmic serine pepet | 2e-34 | |
| PRK10942 | 473 | PRK10942, PRK10942, serine endoprotease; Provision | 2e-32 | |
| PRK10139 | 455 | PRK10139, PRK10139, serine endoprotease; Provision | 2e-31 | |
| PRK10898 | 353 | PRK10898, PRK10898, serine endoprotease; Provision | 2e-28 | |
| cd04878 | 72 | cd04878, ACT_AHAS, N-terminal ACT domain of the Es | 1e-22 | |
| PRK11895 | 161 | PRK11895, ilvH, acetolactate synthase 3 regulatory | 2e-22 | |
| CHL00100 | 174 | CHL00100, ilvH, acetohydroxyacid synthase small su | 1e-20 | |
| pfam13365 | 138 | pfam13365, Trypsin_2, Trypsin-like peptidase domai | 3e-20 | |
| TIGR00119 | 157 | TIGR00119, acolac_sm, acetolactate synthase, small | 3e-18 | |
| COG0440 | 163 | COG0440, IlvH, Acetolactate synthase, small (regul | 1e-16 | |
| pfam00089 | 218 | pfam00089, Trypsin, Trypsin | 8e-14 | |
| PLN02509 | 464 | PLN02509, PLN02509, cystathionine beta-lyase | 4e-12 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 5e-11 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 2e-09 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 2e-09 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 3e-09 | |
| pfam13710 | 63 | pfam13710, ACT_5, ACT domain | 6e-09 | |
| PRK08064 | 390 | PRK08064, PRK08064, cystathionine beta-lyase; Prov | 4e-08 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 9e-08 | |
| PRK06460 | 376 | PRK06460, PRK06460, hypothetical protein; Provisio | 2e-07 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 1e-06 | |
| PRK07269 | 364 | PRK07269, PRK07269, cystathionine gamma-synthase; | 1e-06 | |
| PRK06737 | 76 | PRK06737, PRK06737, acetolactate synthase 1 regula | 1e-06 | |
| PRK07671 | 377 | PRK07671, PRK07671, cystathionine beta-lyase; Prov | 1e-06 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 2e-06 | |
| PRK08776 | 405 | PRK08776, PRK08776, cystathionine gamma-synthase; | 4e-06 | |
| pfam01842 | 66 | pfam01842, ACT, ACT domain | 5e-06 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 7e-06 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 2e-05 | |
| PRK08248 | 431 | PRK08248, PRK08248, O-acetylhomoserine aminocarbox | 2e-05 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 2e-05 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 4e-05 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 5e-05 | |
| PRK05968 | 389 | PRK05968, PRK05968, hypothetical protein; Provisio | 6e-05 | |
| PRK07811 | 388 | PRK07811, PRK07811, cystathionine gamma-synthase; | 6e-05 | |
| PRK05994 | 427 | PRK05994, PRK05994, O-acetylhomoserine aminocarbox | 7e-05 | |
| PRK08249 | 398 | PRK08249, PRK08249, cystathionine gamma-synthase; | 9e-05 | |
| PRK06176 | 380 | PRK06176, PRK06176, cystathionine gamma-synthase/c | 1e-04 | |
| PRK08133 | 390 | PRK08133, PRK08133, O-succinylhomoserine sulfhydry | 1e-04 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 2e-04 | |
| PRK08134 | 433 | PRK08134, PRK08134, O-acetylhomoserine aminocarbox | 2e-04 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 3e-04 | |
| PRK07812 | 436 | PRK07812, PRK07812, O-acetylhomoserine aminocarbox | 3e-04 | |
| PRK06434 | 384 | PRK06434, PRK06434, cystathionine gamma-lyase; Val | 3e-04 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 4e-04 | |
| PRK08178 | 96 | PRK08178, PRK08178, acetolactate synthase 1 regula | 4e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 5e-04 | |
| PRK09028 | 394 | PRK09028, PRK09028, cystathionine beta-lyase; Prov | 5e-04 | |
| PLN02242 | 418 | PLN02242, PLN02242, methionine gamma-lyase | 8e-04 | |
| cd04876 | 71 | cd04876, ACT_RelA-SpoT, ACT domain found C-termina | 8e-04 | |
| PRK05967 | 395 | PRK05967, PRK05967, cystathionine beta-lyase; Prov | 0.001 | |
| PRK08114 | 395 | PRK08114, PRK08114, cystathionine beta-lyase; Prov | 0.003 |
| >gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-52
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
RG G+G + DG+++TN HV+ GA + V+ SD F A++VG D D+AVL IDA
Sbjct: 57 RGLGSGVIISADGYVLTNNHVVDGADEITVTLSDGREFKAKLVGKDPRTDIAVLKIDAKK 116
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRL-IQGVIQIDAS 303
L I + S LRVG + AIG+P G T T+G++SAL R G + IQ DA+
Sbjct: 117 -NLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTSGIVSALGRSGLGIGDYENFIQTDAA 175
Query: 304 VNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
+N GNSGGPL++ G +IG+NT I S G GIGFA+P + + +VDQL++
Sbjct: 176 INPGNSGGPLVNLRGEVIGINTAILSPSGGNVGIGFAIPSNMAKNVVDQLIEG 228
|
This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428 |
| >gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-43
Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 5/199 (2%)
Query: 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQST 221
+I++ + G G+GF+ DG+IVTN HVI GA + V+ +D
Sbjct: 48 SIATGLTAKLRSFFPSDPPLRSAEGLGSGFIISSDGYIVTNNHVIAGAEEITVTLADGRE 107
Query: 222 FYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGV 281
A++VG D ++DLAVL ID L I + S LRVG + AIG+P G T T+G+
Sbjct: 108 VPAKLVGKDPISDLAVLKIDGAG-GLPVIALGDSDKLRVGDVVVAIGNPFGLGQTVTSGI 166
Query: 282 ISALDR-EIPGRL-IQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT--SGAFSGIGF 337
+SAL R + IQ DA++N GNSGGPL++ G ++G+NT I SG SGIGF
Sbjct: 167 VSALGRTGVGSAGGYVNFIQTDAAINPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGF 226
Query: 338 ALPIDTVRGIVDQLVKFSR 356
A+P++ V ++D+L+ +
Sbjct: 227 AIPVNLVAPVLDELISKGK 245
|
Length = 347 |
| >gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-34
Identities = 74/199 (37%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV I N I ++ ++G G+G + ++G+I+TNYHVI A + V+ D F A
Sbjct: 57 AVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEA 116
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
++VG D + DLAVL I+ N L I V++ VG + AIG+P T T G+ISA
Sbjct: 117 ELVGSDPLTDLAVLKIEGDN--LPTIPVNLDRPPHVGDVVLAIGNPYNLGQTITQGIISA 174
Query: 285 LDR---EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTF----ITSGAFSGIGF 337
R GR Q IQ DA++N GNSGG L++++G L+G+NT GI F
Sbjct: 175 TGRNGLSSVGR--QNFIQTDAAINAGNSGGALINTNGELVGINTASFQKGGDEGGEGINF 232
Query: 338 ALPIDTVRGIVDQLVKFSR 356
A+PI I+ ++++ R
Sbjct: 233 AIPIKLAHKIMGKIIRDGR 251
|
This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E) [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 351 |
| >gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 12/192 (6%)
Query: 170 GNLGIREDQSETEFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVG 228
G G + +F G+G + D D G++VTN HV+ A+ +KV SD F A+VVG
Sbjct: 96 GGQGGNGGGQQQKF-MALGSGVIIDADKGYVVTNNHVVDNATKIKVQLSDGRKFDAKVVG 154
Query: 229 HDQVNDLAVLHI-DAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDR 287
D +D+A++ + + N L I ++ S LRVG AIG+P G T T+G++SAL R
Sbjct: 155 KDPRSDIALIQLQNPKN--LTAIKMADSDALRVGDYTVAIGNPYGLGETVTSGIVSALGR 212
Query: 288 EIPGRLIQ---GVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPID 342
G ++ IQ DA++N GNSGG L++ +G LIG+NT I + G GIGFA+P +
Sbjct: 213 S--GLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN 270
Query: 343 TVRGIVDQLVKF 354
V+ + Q+V++
Sbjct: 271 MVKNLTSQMVEY 282
|
Length = 473 |
| >gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 2e-31
Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 177 DQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDL 235
DQ F G G+G + D G+++TN HVI A + + +D F A+++G D +D+
Sbjct: 82 DQPAQPF-EGLGSGVIIDAAKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDI 140
Query: 236 AVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQ 295
A+L I P+ L I ++ S LRVG A+G+P G T T+G+ISAL R G ++
Sbjct: 141 ALLQIQNPSK-LTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIISALGRS--GLNLE 197
Query: 296 GV---IQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQ 350
G+ IQ DAS+N GNSGG LL+ +G LIG+NT I + G GIGFA+P + R + Q
Sbjct: 198 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQ 257
Query: 351 LVKF 354
L+ F
Sbjct: 258 LIDF 261
|
Length = 455 |
| >gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 77/199 (38%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 166 VVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225
VV + N + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 58 VVNVYNRSLNSTSHNQLEIRTLGSGVIMDQRGYILTNKHVINDADQIIVALQDGRVFEAL 117
Query: 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISAL 285
+VG D + DLAVL I+A N + PI+ +G + AIG+P T T G+ISA
Sbjct: 118 LVGSDSLTDLAVLKINATNLPVIPINPKRVP--HIGDVVLAIGNPYNLGQTITQGIISAT 175
Query: 286 DR---EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNT--FITS---GAFSGIGF 337
R GR Q +Q DAS+N GNSGG L++S G L+G+NT F S GIGF
Sbjct: 176 GRIGLSPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGF 233
Query: 338 ALPIDTVRGIVDQLVKFSR 356
A+P I+D+L++ R
Sbjct: 234 AIPTQLATKIMDKLIRDGR 252
|
Length = 353 |
| >gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-22
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVVK 103
HT+SV V +E G+L+RI G+F RR NIESL V + + T+VV G D ++Q+VK
Sbjct: 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60
Query: 104 QLQKLVNVLKVS 115
QL KLV+VLKVS
Sbjct: 61 QLNKLVDVLKVS 72
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72 |
| >gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 2e-22
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVV 102
RHT+SV V +E G+LSR+ G+F+RR NIESL V + + T+V G ++ ++Q+
Sbjct: 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61
Query: 103 KQLQKLVNVLKVS 115
KQL KL++VLKV
Sbjct: 62 KQLNKLIDVLKVV 74
|
Length = 161 |
| >gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 9/76 (11%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-----IGLNKDRALFTMVVFGTDREL 98
+HT+SV V DESG+L+RI G+F RR NIESL V G+++ TMVV G DR +
Sbjct: 2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR----ITMVVPGDDRTI 57
Query: 99 QQVVKQLQKLVNVLKV 114
+Q+ KQL KLVN+LKV
Sbjct: 58 EQLTKQLYKLVNILKV 73
|
Length = 174 |
| >gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-20
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 188 GAGFLWDQDGHIVTNYHVI--CGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH 245
G GF+ DG I+TN HV+ AS ++V D A+VV D DLA+L +D P
Sbjct: 1 GTGFVVGSDGLILTNAHVVEDADASEIEVVLPDGGRVPAEVVAADPDLDLALLKVDGPLL 60
Query: 246 ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVN 305
P+ S +A L + +G + G + L G + I DA +
Sbjct: 61 PAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGGGVGGLVSGSLGGVDGRYILTDADTS 120
Query: 306 LGNSGGPLLDSSGSLIGV 323
G+SGGP+ D+ G ++G+
Sbjct: 121 PGSSGGPVFDADGEVVGI 138
|
This family includes trypsin like peptidase domains. Length = 138 |
| >gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-18
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVV 102
RH +SV V +E G+LSR+ G+FTRR NIESL V + D + T+VV G D+ L+Q+
Sbjct: 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60
Query: 103 KQLQKLVNVLKVS 115
KQL KLV+V+KVS
Sbjct: 61 KQLNKLVDVIKVS 73
|
Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157 |
| >gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-16
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 41 RVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQ 99
R +S+ V +E G+LSR+ G+F+RR NIESL V + T+VV G ++ L+
Sbjct: 1 MPMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLE 60
Query: 100 QVVKQLQKLVNVLKVSTKQSSSS 122
Q++KQL KL++VLKV S
Sbjct: 61 QIIKQLNKLIDVLKVLDLTSEPH 83
|
Length = 163 |
| >gnl|CDD|215708 pfam00089, Trypsin, Trypsin | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-14
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 33/188 (17%)
Query: 190 GFLWDQDGHIVTNYHVICGASTVKVSFSDQS---------------TFYAQVVGHDQVND 234
G L ++ ++T H + A +V+V + D ND
Sbjct: 29 GSLISEN-WVLTAAHCVSNAKSVRVVLGAHNIVLREGGEQKFDVKKVIVHPNYNPDTDND 87
Query: 235 LAVLHIDAP---NHELRPIHV-SVSADLRVGKKIYAIG----HPLGWSFTCTTGVISALD 286
+A+L + +P +RPI + + S+DL VG G LG T + +
Sbjct: 88 IALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTLQEVTVPVVS 147
Query: 287 RE-----IPGRLIQGVIQIDA---SVNLGNSGGPLLDSSGSLIGVNTFITSGAFSG-IGF 337
RE G + +I A G+SGGPL+ S G LIG+ ++ A G
Sbjct: 148 RETCRSAYGGTVTDNMICAGAGGKDACQGDSGGPLVCSDGELIGIVSWGYGCASGNYPGV 207
Query: 338 ALPIDTVR 345
P+ +
Sbjct: 208 YTPVSSYL 215
|
Length = 218 |
| >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-12
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
MSPV+ RPLE GA IVMHSA+KFIA HSDVMA +AV E++ +
Sbjct: 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK 300
|
Length = 464 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
+P + RPLE GA IV+HSA+K+I HSDV+A + + E +
Sbjct: 165 ATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEAL 206
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
MSP++ PLE GA IV HSA+KF+A HSDVMA +AV E +
Sbjct: 171 MSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEI 212
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
SP + RPLE GA IV+HSA+K+I HSDV+ + VN
Sbjct: 177 ASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNG 215
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
+PV+ RPLE GA IV+HSA+K++ HSDV+ + +E +
Sbjct: 189 ATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEEL 230
|
Length = 396 |
| >gnl|CDD|222334 pfam13710, ACT_5, ACT domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-09
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 53 DESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNV 111
D G+L RI V RR NI SL + + A T+ V G +R + +V QL+KL++V
Sbjct: 1 DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60
Query: 112 LKV 114
L+V
Sbjct: 61 LEV 63
|
ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63 |
| >gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
++P++ +PL+ GA +V+HSA+KF+A HSDV+A V E +
Sbjct: 178 LTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEEL 219
|
Length = 390 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
+P++ RPL GA V+HS +K+IA H+DV+ G+AV
Sbjct: 178 TPLLYRPLRHGADFVVHSLTKYIAGHNDVVG-GVAVAWSG 216
|
Length = 385 |
| >gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
+P+ +PLE GA IV+HSASKF+A H+DV+A A + +
Sbjct: 171 TPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNV 213
|
Length = 376 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRI 61
SP + RPLE G V+HSA+K+I H DV+A G+ + R I D GI++
Sbjct: 187 SPYLQRPLELGCDAVVHSATKYIGGHGDVVA-GVTICKTRALAEKIRPMRKDIGGIMAPF 245
Query: 62 D 62
D
Sbjct: 246 D 246
|
Length = 386 |
| >gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
SP+ RP+E GA IV+HSA+K+++ H+DV+A + N +
Sbjct: 177 SPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLEL 217
|
Length = 364 |
| >gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-06
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVVK 103
HT S+ + ++ +L RI G+F RR I SL + + + T+ E +V
Sbjct: 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62
Query: 104 QLQKLVNVLKVST 116
QL+KL+NVL+V+
Sbjct: 63 QLKKLINVLQVNK 75
|
Length = 76 |
| >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
M+P P+ GA IV+HSA+K++ HSDV+A + VNS +
Sbjct: 174 MTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPEL 215
|
Length = 377 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 20/36 (55%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAV 37
+PV+ RPLE GA IV+HSA+K++ H+DV+A G+ V
Sbjct: 177 TPVLQRPLEEGADIVIHSATKYLGGHNDVLA-GLVV 211
|
Length = 366 |
| >gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGIL-S 59
+SP + +PLEFGA +V+HS +K+I HSDV+ G AV + + H V+ + G+ S
Sbjct: 185 LSPALQKPLEFGADLVLHSTTKYINGHSDVV--GGAVVARDAELHQQLVWWANALGLTGS 242
Query: 60 RIDGVFTRR 68
D T R
Sbjct: 243 PFDAFLTLR 251
|
Length = 405 |
| >gnl|CDD|190133 pfam01842, ACT, ACT domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-06
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQ 104
+ V V D G+L+ + G R NIES+ + +VV + +L+ ++
Sbjct: 1 TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60
Query: 105 LQKLVN 110
L+KL+
Sbjct: 61 LKKLLG 66
|
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
+P + RP+E GA IV+HSA+K+I H + G+ V+
Sbjct: 188 TPYLCRPIEHGADIVVHSATKYIGGHGTAIG-GVIVDG 224
|
Length = 426 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS-ERVQR 44
+P + RPLE GA +V+HSA+K++ H D+ A G+ V R
Sbjct: 191 TPYLQRPLELGADLVVHSATKYLGGHGDITA-GLVVGGKALADR 233
|
Length = 403 |
| >gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
SP +LRP+E GA IV+HSA+KFI H + G+ V+S +
Sbjct: 190 SPYLLRPIEHGADIVVHSATKFIGGHGTSIG-GVIVDSGK 228
|
Length = 431 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P + RPL+ GA +V+HSA+K++ H DV+A G V E
Sbjct: 191 CTPYIQRPLQLGADVVVHSATKYLNGHGDVIA-GFVVGKE 229
|
Length = 400 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
+P++ P+ G +V+HSA+K+I H DV+A I +E +Q+
Sbjct: 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQ 227
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMA 32
+SP + PL GA +V+HS +K++ HSDV+A
Sbjct: 176 LSPALQNPLALGADLVLHSCTKYLNGHSDVIA 207
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
SPV RP+ G +V+HSASK++ HSD +A +A + E + R
Sbjct: 188 SPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR 230
|
Length = 389 |
| >gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
SP + +PL GA +V+HS +K+I HSDV+ + N E
Sbjct: 187 SPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDE 225
|
Length = 388 |
| >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVN 38
SP ++RP+E GA IV+HS +KF+ H + M GI V+
Sbjct: 189 SPYLIRPIEHGADIVVHSLTKFLGGHGNSMG-GIIVD 224
|
Length = 427 |
| >gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
+P+ PL GA +V+HSA+KF++ H+D + G+ S+ +
Sbjct: 190 TPINQNPLALGADLVIHSATKFLSGHADALG-GVVCGSKEL 229
|
Length = 398 |
| >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRI 61
+P PL GA IV+HS +K++ HSDV+A + N+E + + I+ F G+L
Sbjct: 175 TPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE-IAFFQNAIGGVLGPQ 233
Query: 62 DGVFTRRNCNIESLGV 77
D +R I++LG+
Sbjct: 234 DSWLLQR--GIKTLGL 247
|
Length = 380 |
| >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQ 43
+P + +PL+ GA +V+HSA+K++ V+ + + E ++
Sbjct: 187 TPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELME 228
|
Length = 390 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
+P + RP++ GA IV+HSA+K+I H + G+ V+
Sbjct: 182 ATPYLCRPIDHGADIVVHSATKYIGGHGTAIG-GVIVDG 219
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
+P +LRP E GA +V HSA+KF+ H + G+ V+ R
Sbjct: 190 TPYLLRPFEHGADLVYHSATKFLGGHGTAIG-GVLVDGGR 228
|
Length = 433 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMA 32
+SP + PL GA +V+HS +K++ HSDV+A
Sbjct: 177 LSPALQNPLALGADLVLHSCTKYLNGHSDVVA 208
|
Length = 386 |
| >gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
+P ++RPLE GA IV+HSA+K++ H +A G+ V+
Sbjct: 196 TPYLIRPLEHGADIVVHSATKYLGGHGTAIA-GVIVDG 232
|
Length = 436 |
| >gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
SP PL+ GA +V+HSA+K+I+ HSDV+ N++ +
Sbjct: 187 SPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSI 227
|
Length = 384 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVM 31
++PV+ +PLE GA V+HS +K+I HSDV+
Sbjct: 178 LTPVLQKPLELGADFVIHSTTKYINGHSDVI 208
|
Length = 388 |
| >gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 51 VGDESGILSRIDGVFTRRNCNIESLGVIGLNK-DRALFTMVVFGTDRELQQVVKQLQKLV 109
V + G++S + G+F RR N+E + + + D++ ++V D+ L+Q++ Q++KL
Sbjct: 15 VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLE 73
Query: 110 NVLKVSTKQSSSS---SLEPFF 128
+VLKV QS + + FF
Sbjct: 74 DVLKVRRNQSDPTMFNKIAVFF 95
|
Length = 96 |
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQ 106
++V D G+L+++ V NI S+ +V D +L+++++ L+
Sbjct: 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEALE 60
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60 |
| >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
SP+ RP E G I + +A+K+I HSDVM G A +E+
Sbjct: 187 SPINSRPFEMGVDISIQAATKYIVGHSDVML-GTATANEK 225
|
Length = 394 |
| >gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMA---CGIA 36
+P+VL P GA +V+HS SKFI+ +D++A CG A
Sbjct: 203 APMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 240
|
Length = 418 |
| >gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRE-LQQVVKQL 105
I V D G+L+ I V NI S+ + A + + D E L +++++L
Sbjct: 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKL 60
Query: 106 QKLVNVLKV 114
+++ V+ V
Sbjct: 61 RQIPGVIDV 69
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P+ RPL+FG I +H+A+K+ + HSD++ ++ N +
Sbjct: 190 TPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEK 228
|
Length = 395 |
| >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
V+ + L+FG I + + +K++ HSD M G AV + R
Sbjct: 192 VLFKALDFGIDISIQAGTKYLVGHSDAM-IGTAVANAR 228
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| PRK10898 | 353 | serine endoprotease; Provisional | 100.0 | |
| TIGR02038 | 351 | protease_degS periplasmic serine pepetdase DegS. T | 100.0 | |
| PRK10139 | 455 | serine endoprotease; Provisional | 100.0 | |
| PRK10942 | 473 | serine endoprotease; Provisional | 100.0 | |
| TIGR02037 | 428 | degP_htrA_DO periplasmic serine protease, Do/DeqQ | 100.0 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.95 | |
| COG0265 | 347 | DegQ Trypsin-like serine proteases, typically peri | 99.94 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.94 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.93 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.91 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.79 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.78 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.77 | |
| KOG1320 | 473 | consensus Serine protease [Posttranslational modif | 99.76 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.76 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.75 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PF13365 | 120 | Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8 | 99.72 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.71 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 99.7 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.7 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.7 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.7 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.69 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 99.67 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 99.67 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.66 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.66 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.65 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.64 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 99.63 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.61 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.6 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.6 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.59 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 99.58 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.58 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.57 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.57 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.57 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.57 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.56 | |
| PF00089 | 220 | Trypsin: Trypsin; InterPro: IPR001254 In the MEROP | 99.56 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 99.55 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.54 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.53 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.52 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 99.51 | |
| KOG1421 | 955 | consensus Predicted signaling-associated protein ( | 99.5 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 99.49 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.49 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.48 | |
| cd00190 | 232 | Tryp_SPc Trypsin-like serine protease; Many of the | 99.47 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.42 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 99.41 | |
| smart00020 | 229 | Tryp_SPc Trypsin-like serine protease. Many of the | 99.36 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 99.31 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.28 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.15 | |
| COG3591 | 251 | V8-like Glu-specific endopeptidase [Amino acid tra | 99.0 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.83 | |
| KOG1320 | 473 | consensus Serine protease [Posttranslational modif | 98.63 | |
| PF00863 | 235 | Peptidase_C4: Peptidase family C4 This family belo | 98.61 | |
| KOG3627 | 256 | consensus Trypsin [Amino acid transport and metabo | 98.58 | |
| KOG1421 | 955 | consensus Predicted signaling-associated protein ( | 98.2 | |
| PF05579 | 297 | Peptidase_S32: Equine arteritis virus serine endop | 97.93 | |
| PF03761 | 282 | DUF316: Domain of unknown function (DUF316) ; Inte | 97.77 | |
| COG5640 | 413 | Secreted trypsin-like serine protease [Posttransla | 97.74 | |
| PF05580 | 218 | Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR | 97.39 | |
| PF00548 | 172 | Peptidase_C3: 3C cysteine protease (picornain 3C); | 97.24 | |
| PF10459 | 698 | Peptidase_S46: Peptidase S46; InterPro: IPR019500 | 96.91 | |
| PF10459 | 698 | Peptidase_S46: Peptidase S46; InterPro: IPR019500 | 96.65 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 96.53 | |
| PF08192 | 695 | Peptidase_S64: Peptidase family S64; InterPro: IPR | 96.44 | |
| PF00949 | 132 | Peptidase_S7: Peptidase S7, Flavivirus NS3 serine | 96.22 | |
| TIGR02860 | 402 | spore_IV_B stage IV sporulation protein B. SpoIVB, | 96.18 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 96.15 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 95.74 | |
| PF02122 | 203 | Peptidase_S39: Peptidase S39; InterPro: IPR000382 | 95.66 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 95.45 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 94.83 | |
| COG3978 | 86 | Acetolactate synthase (isozyme II), small (regulat | 94.53 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 94.46 | |
| PF09342 | 267 | DUF1986: Domain of unknown function (DUF1986); Int | 94.16 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.16 | |
| PF00944 | 158 | Peptidase_S3: Alphavirus core protein ; InterPro: | 94.08 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 93.91 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 93.78 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 93.41 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 93.18 | |
| PF02395 | 769 | Peptidase_S6: Immunoglobulin A1 protease Serine pr | 92.67 | |
| PF05416 | 535 | Peptidase_C37: Southampton virus-type processing p | 92.67 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 92.5 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 92.43 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 92.16 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 91.19 | |
| PF03510 | 105 | Peptidase_C24: 2C endopeptidase (C24) cysteine pro | 91.15 | |
| PF02907 | 148 | Peptidase_S29: Hepatitis C virus NS3 protease; Int | 91.05 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 90.02 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 88.86 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 88.48 | |
| PRK00194 | 90 | hypothetical protein; Validated | 88.46 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 88.29 | |
| PF00947 | 127 | Pico_P2A: Picornavirus core protein 2A; InterPro: | 86.78 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 86.54 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 86.41 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 86.29 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 86.24 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 85.38 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 85.05 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 83.85 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 83.48 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 82.36 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 81.78 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 81.7 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 81.62 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 81.35 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 80.98 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 80.09 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 80.04 |
| >PRK10898 serine endoprotease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=285.00 Aligned_cols=208 Identities=35% Similarity=0.471 Sum_probs=176.8
Q ss_pred hhhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEE
Q 018198 150 MDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGH 229 (359)
Q Consensus 150 ~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~ 229 (359)
....++.++++++.||||.|................+.||||+|+++||||||+|||.+...+.|++.||+.+++++++.
T Consensus 42 ~~~~~~~~~~~~~~psvV~v~~~~~~~~~~~~~~~~~~GSGfvi~~~G~IlTn~HVv~~a~~i~V~~~dg~~~~a~vv~~ 121 (353)
T PRK10898 42 ETPASYNQAVRRAAPAVVNVYNRSLNSTSHNQLEIRTLGSGVIMDQRGYILTNKHVINDADQIIVALQDGRVFEALLVGS 121 (353)
T ss_pred cccchHHHHHHHhCCcEEEEEeEeccccCcccccccceeeEEEEeCCeEEEecccEeCCCCEEEEEeCCCCEEEEEEEEE
Confidence 33346889999999999999986543221111233578999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCC-cccccEEEEcccCCCCC
Q 018198 230 DQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG-RLIQGVIQIDASVNLGN 308 (359)
Q Consensus 230 d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~-~~~~~~i~~~~~~~~G~ 308 (359)
|+.+||||||++.. .+++++++++..+++|++|+++|||++...+++.|+|+...+.... ....+++++|+.+++|+
T Consensus 122 d~~~DlAvl~v~~~--~l~~~~l~~~~~~~~G~~V~aiG~P~g~~~~~t~Giis~~~r~~~~~~~~~~~iqtda~i~~Gn 199 (353)
T PRK10898 122 DSLTDLAVLKINAT--NLPVIPINPKRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLSPTGRQNFLQTDASINHGN 199 (353)
T ss_pred cCCCCEEEEEEcCC--CCCeeeccCcCcCCCCCEEEEEeCCCCcCCCcceeEEEeccccccCCccccceEEeccccCCCC
Confidence 99999999999875 3788999888889999999999999998889999999988765331 22346899999999999
Q ss_pred ccceeecCCCeEEEEEeeecCC-----CcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 309 SGGPLLDSSGSLIGVNTFITSG-----AFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 309 SGgPl~~~~G~viGi~~~~~~~-----~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
|||||+|.+|+||||+++.... ...+++|+||++.+++++++|+++|++.|
T Consensus 200 SGGPl~n~~G~vvGI~~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~~~~ 255 (353)
T PRK10898 200 SGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIR 255 (353)
T ss_pred CcceEECCCCeEEEEEEEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCcccc
Confidence 9999999999999999987532 12579999999999999999999999764
|
|
| >TIGR02038 protease_degS periplasmic serine pepetdase DegS | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=283.62 Aligned_cols=209 Identities=35% Similarity=0.515 Sum_probs=179.2
Q ss_pred chhhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEE
Q 018198 149 QMDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVG 228 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~ 228 (359)
...+.++.++++++.||||.|.......+........+.||||+|+++||||||+|||.++..+.|++.||+.+++++++
T Consensus 41 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~~~~~i~V~~~dg~~~~a~vv~ 120 (351)
T TIGR02038 41 NTVEISFNKAVRRAAPAVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEAELVG 120 (351)
T ss_pred cccchhHHHHHHhcCCcEEEEEeEeccccccccccccceEEEEEEeCCeEEEecccEeCCCCEEEEEECCCCEEEEEEEE
Confidence 34455788999999999999998654433222223467899999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCC-cccccEEEEcccCCCC
Q 018198 229 HDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG-RLIQGVIQIDASVNLG 307 (359)
Q Consensus 229 ~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~-~~~~~~i~~~~~~~~G 307 (359)
.|+.+||||||++... +++++++++..+++|++|+++|||++...+++.|+|+...+.... ....+++++|+.+++|
T Consensus 121 ~d~~~DlAvlkv~~~~--~~~~~l~~s~~~~~G~~V~aiG~P~~~~~s~t~GiIs~~~r~~~~~~~~~~~iqtda~i~~G 198 (351)
T TIGR02038 121 SDPLTDLAVLKIEGDN--LPTIPVNLDRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAAINAG 198 (351)
T ss_pred ecCCCCEEEEEecCCC--CceEeccCcCccCCCCEEEEEeCCCCCCCcEEEEEEEeccCcccCCCCcceEEEECCccCCC
Confidence 9999999999999754 788899888889999999999999998899999999998775432 2235789999999999
Q ss_pred CccceeecCCCeEEEEEeeecC----CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 308 NSGGPLLDSSGSLIGVNTFITS----GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 308 ~SGgPl~~~~G~viGi~~~~~~----~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
+|||||+|.+|+||||+++... ....+++|+||++.+++++++++++|++.|
T Consensus 199 nSGGpl~n~~G~vIGI~~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~~~r 254 (351)
T TIGR02038 199 NSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIR 254 (351)
T ss_pred CCcceEECCCCeEEEEEeeeecccCCCCccceEEEecHHHHHHHHHHHhhcCcccc
Confidence 9999999999999999987652 223679999999999999999999998754
|
This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E). |
| >PRK10139 serine endoprotease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=289.21 Aligned_cols=205 Identities=37% Similarity=0.579 Sum_probs=177.4
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC----------Cccc-------ccccceEEEEEEeC-CCEEEecccccCCCCeEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED----------QSET-------EFLRGSGAGFLWDQ-DGHIVTNYHVICGASTVKVS 215 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~----------~~~~-------~~~~~~GsGfii~~-~g~vlT~~Hvv~~~~~~~v~ 215 (359)
++.++++++.||||.|.+...... +++. ....+.||||+|++ +||||||+|||.+...+.|+
T Consensus 41 ~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSG~ii~~~~g~IlTn~HVv~~a~~i~V~ 120 (455)
T PRK10139 41 SLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIDAAKGYVLTNNHVINQAQKISIQ 120 (455)
T ss_pred cHHHHHHHhCCcEEEEEEEEeecccccCchhHHHhccccCCccccccccceEEEEEEECCCCEEEeChHHhCCCCEEEEE
Confidence 588999999999999998653211 1110 12247899999985 79999999999999999999
Q ss_pred ecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC-Cccc
Q 018198 216 FSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-GRLI 294 (359)
Q Consensus 216 ~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-~~~~ 294 (359)
+.||+.++|++++.|+.+||||||++.+. .+++++|+++..+++|++|+++|||++...+++.|+|+...+... ...+
T Consensus 121 ~~dg~~~~a~vvg~D~~~DlAvlkv~~~~-~l~~~~lg~s~~~~~G~~V~aiG~P~g~~~tvt~GivS~~~r~~~~~~~~ 199 (455)
T PRK10139 121 LNDGREFDAKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGL 199 (455)
T ss_pred ECCCCEEEEEEEEEcCCCCEEEEEecCCC-CCceeEecCccccCCCCEEEEEecCCCCCCceEEEEEccccccccCCCCc
Confidence 99999999999999999999999998533 588999999999999999999999999999999999999887532 2234
Q ss_pred ccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 295 QGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 295 ~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
.+++++|+.+++|+|||||||.+|+||||+++... +...+++|+||++.+++++++|+++|+++|
T Consensus 200 ~~~iqtda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g~v~r 266 (455)
T PRK10139 200 ENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKR 266 (455)
T ss_pred ceEEEECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhhcCcccc
Confidence 57899999999999999999999999999998763 345789999999999999999999999875
|
|
| >PRK10942 serine endoprotease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.55 Aligned_cols=205 Identities=37% Similarity=0.560 Sum_probs=176.2
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC-----------Cccc-----------------------------ccccceEEEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED-----------QSET-----------------------------EFLRGSGAGFLW 193 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~-----------~~~~-----------------------------~~~~~~GsGfii 193 (359)
++.++++++.||||.|.+...... +|.. ....+.||||+|
T Consensus 39 ~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ii 118 (473)
T PRK10942 39 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRQFQQFFGDNSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII 118 (473)
T ss_pred cHHHHHHHhCCceEEEEEEEeccccCCCCChhHHHhhcccccccccccccccccccccccccccccccccccceEEEEEE
Confidence 589999999999999998653211 0110 012468999999
Q ss_pred eC-CCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCC
Q 018198 194 DQ-DGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLG 272 (359)
Q Consensus 194 ~~-~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~ 272 (359)
++ +||||||+||+.+.+++.|++.|++.+++++++.|+.+||||||++... .++++.|+++..+++|++|+++|+|++
T Consensus 119 ~~~~G~IlTn~HVv~~a~~i~V~~~dg~~~~a~vv~~D~~~DlAvlki~~~~-~l~~~~lg~s~~l~~G~~V~aiG~P~g 197 (473)
T PRK10942 119 DADKGYVVTNNHVVDNATKIKVQLSDGRKFDAKVVGKDPRSDIALIQLQNPK-NLTAIKMADSDALRVGDYTVAIGNPYG 197 (473)
T ss_pred ECCCCEEEeChhhcCCCCEEEEEECCCCEEEEEEEEecCCCCEEEEEecCCC-CCceeEecCccccCCCCEEEEEcCCCC
Confidence 96 5999999999999999999999999999999999999999999997533 588999999899999999999999999
Q ss_pred CCCceeEeEEeeeecccC-CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHH
Q 018198 273 WSFTCTTGVISALDREIP-GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 273 ~~~~~~~G~vs~~~~~~~-~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~ 349 (359)
...+++.|+|+...+... ...+.+++++|+.+++|+|||||+|.+|+||||+++... ++..+++|+||++.++++++
T Consensus 198 ~~~tvt~GiVs~~~r~~~~~~~~~~~iqtda~i~~GnSGGpL~n~~GeviGI~t~~~~~~g~~~g~gfaIP~~~~~~v~~ 277 (473)
T PRK10942 198 LGETVTSGIVSALGRSGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTS 277 (473)
T ss_pred CCcceeEEEEEEeecccCCcccccceEEeccccCCCCCcCccCCCCCeEEEEEEEEEcCCCCcccEEEEEEHHHHHHHHH
Confidence 989999999999887532 223457899999999999999999999999999998763 34467999999999999999
Q ss_pred HHHhcCcccC
Q 018198 350 QLVKFSRYCN 359 (359)
Q Consensus 350 ~l~~~g~v~~ 359 (359)
+|+++|+++|
T Consensus 278 ~l~~~g~v~r 287 (473)
T PRK10942 278 QMVEYGQVKR 287 (473)
T ss_pred HHHhcccccc
Confidence 9999999875
|
|
| >TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=273.02 Aligned_cols=204 Identities=40% Similarity=0.584 Sum_probs=176.4
Q ss_pred HHHhhhcCCCeeEEEEeeeeecC-------------Ccc-----------cccccceEEEEEEeCCCEEEecccccCCCC
Q 018198 155 TIRIFEENISSVVWIGNLGIRED-------------QSE-----------TEFLRGSGAGFLWDQDGHIVTNYHVICGAS 210 (359)
Q Consensus 155 ~~~~~~~~~~svV~I~~~~~~~~-------------~~~-----------~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~ 210 (359)
+.++++++.||||.|.+...... ++. .....+.||||+|+++||||||+||+.++.
T Consensus 3 ~~~~~~~~~p~vv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfii~~~G~IlTn~Hvv~~~~ 82 (428)
T TIGR02037 3 FAPLVEKVAPAVVNISVEGTVKRRNRPPALPPFFRQFFGDDMPNFPRQQRERKVRGLGSGVIISADGYILTNNHVVDGAD 82 (428)
T ss_pred HHHHHHHhCCceEEEEEEEEecccCCCcccchhHHHhhcccccCcccccccccccceeeEEEECCCCEEEEcHHHcCCCC
Confidence 67899999999999998653211 111 012357899999999999999999999999
Q ss_pred eEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeeccc-
Q 018198 211 TVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI- 289 (359)
Q Consensus 211 ~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~- 289 (359)
++.|++.|++.++++++..|+.+||||||++.. ..++++.|+++..+++|++|+++|||++...+++.|+|+...+..
T Consensus 83 ~i~V~~~~~~~~~a~vv~~d~~~DlAllkv~~~-~~~~~~~l~~~~~~~~G~~v~aiG~p~g~~~~~t~G~vs~~~~~~~ 161 (428)
T TIGR02037 83 EITVTLSDGREFKAKLVGKDPRTDIAVLKIDAK-KNLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTSGIVSALGRSGL 161 (428)
T ss_pred eEEEEeCCCCEEEEEEEEecCCCCEEEEEecCC-CCceEEEccCCCCCCCCCEEEEEECCCcCCCcEEEEEEEecccCcc
Confidence 999999999999999999999999999999875 358999999888999999999999999999999999999987763
Q ss_pred CCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 290 PGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 290 ~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
....+..++++|+.+.+|+|||||||.+|+||||+++... +...+++|+||++.+++++++|+++|++.|
T Consensus 162 ~~~~~~~~i~tda~i~~GnSGGpl~n~~G~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g~~~~ 233 (428)
T TIGR02037 162 GIGDYENFIQTDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGGKVQR 233 (428)
T ss_pred CCCCccceEEECCCCCCCCCCCceECCCCeEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHhcCcCcC
Confidence 2233456899999999999999999999999999988763 345689999999999999999999998864
|
This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-30 Score=244.64 Aligned_cols=114 Identities=27% Similarity=0.346 Sum_probs=101.5
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeec-CCCCccchhhhhhhhccceeeeeEeec
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVG-DESGILSRIDGVFTRRNCNIESLGVIG 79 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~-~~G~~lsp~~a~l~~RG~~tl~lr~~~ 79 (359)
+||++|+||++|||||+||+|||++||||+|+|+|+++++.+++ .+....+ ++|++++|+||||++||++||.+||
T Consensus 189 atP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~-~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~Rm-- 265 (396)
T COG0626 189 ATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYE-LLFFAQRANTGAVLSPFDAWLLLRGLRTLALRM-- 265 (396)
T ss_pred ccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHH-HHHHHHHhhcCCCCCHHHHHHHHhccchHHHHH--
Confidence 68999999999999999999999999999999988888887766 3323344 6999999999999999999999999
Q ss_pred ccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcccc
Q 018198 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFFL 129 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~li 129 (359)
++| ++|+++|++||++++.|.+|+|. .++++..|++.-
T Consensus 266 ---~~~---------~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~r 304 (396)
T COG0626 266 ---ERH---------NENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKR 304 (396)
T ss_pred ---HHH---------HHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHH
Confidence 999 99999999999999999999997 467777776543
|
|
| >COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=214.71 Aligned_cols=206 Identities=38% Similarity=0.576 Sum_probs=177.8
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecC--Cccc----ccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEE
Q 018198 153 LETIRIFEENISSVVWIGNLGIRED--QSET----EFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQV 226 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~--~~~~----~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v 226 (359)
..+..+++++.|+||.|........ ++.. ....+.||||+++++|||+|+.|++.++.++.+.+.||+.+++++
T Consensus 33 ~~~~~~~~~~~~~vV~~~~~~~~~~~~~~~~~~~~~~~~~~gSg~i~~~~g~ivTn~hVi~~a~~i~v~l~dg~~~~a~~ 112 (347)
T COG0265 33 LSFATAVEKVAPAVVSIATGLTAKLRSFFPSDPPLRSAEGLGSGFIISSDGYIVTNNHVIAGAEEITVTLADGREVPAKL 112 (347)
T ss_pred cCHHHHHHhcCCcEEEEEeeeeecchhcccCCcccccccccccEEEEcCCeEEEecceecCCcceEEEEeCCCCEEEEEE
Confidence 5778899999999999998754321 0000 001479999999989999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecc-cCC-cccccEEEEcccC
Q 018198 227 VGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPG-RLIQGVIQIDASV 304 (359)
Q Consensus 227 ~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~-~~~~~~i~~~~~~ 304 (359)
++.|+..|+|++|++.... ++.+.++++..++.|+++.++|+|++...+++.|+++...+. ... ..+.++||+|+.+
T Consensus 113 vg~d~~~dlavlki~~~~~-~~~~~~~~s~~l~vg~~v~aiGnp~g~~~tvt~Givs~~~r~~v~~~~~~~~~IqtdAai 191 (347)
T COG0265 113 VGKDPISDLAVLKIDGAGG-LPVIALGDSDKLRVGDVVVAIGNPFGLGQTVTSGIVSALGRTGVGSAGGYVNFIQTDAAI 191 (347)
T ss_pred EecCCccCEEEEEeccCCC-CceeeccCCCCcccCCEEEEecCCCCcccceeccEEeccccccccCcccccchhhccccc
Confidence 9999999999999998654 788899999999999999999999999999999999999886 221 2256789999999
Q ss_pred CCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 305 NLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 305 ~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
++|+||||++|.+|++|||++...... ..+++|+||.+.++.++++++++|++.|
T Consensus 192 n~gnsGgpl~n~~g~~iGint~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G~v~~ 248 (347)
T COG0265 192 NPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDELISKGKVVR 248 (347)
T ss_pred CCCCCCCceEcCCCcEEEEEEEEecCCCCcceeEEEecHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999999998432 3579999999999999999999887764
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-28 Score=220.13 Aligned_cols=114 Identities=23% Similarity=0.236 Sum_probs=101.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee-------------------------------eEEEE
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR-------------------------------HTISV 49 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~-------------------------------~~l~~ 49 (359)
+||+++||+++|||||+||+||||+||+..|||+|++...+.|. +.+..
T Consensus 187 atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~ 266 (426)
T COG2873 187 ATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQ 266 (426)
T ss_pred CcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHH
Confidence 58999999999999999999999999999999999987655443 11234
Q ss_pred eecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 50 FVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 50 ~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
..+++|.+||||++|+++.|++||+||| ++| ++|+++|++||++||+|.+|+|. .++++..+++-
T Consensus 267 ~lRDlGa~lsPfnAfl~lqGlETL~LRm-----erH---------~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~ 332 (426)
T COG2873 267 LLRDLGATLSPFNAFLLLQGLETLSLRM-----ERH---------CENALKVAEFLENHPKVAWVNYPGLASHPYHALAK 332 (426)
T ss_pred HHHhcccccCcHHHHHHHhchhhhHHHH-----HHH---------HHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHH
Confidence 6789999999999999999999999999 999 99999999999999999999998 46777777753
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-27 Score=224.34 Aligned_cols=117 Identities=26% Similarity=0.276 Sum_probs=107.3
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++|+||.||||||+||+||||+||||+|+|+++.+.+++++ .++.+++.+|++++|++||+..||++|++|||
T Consensus 202 ~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~-~l~~~~~~lg~~~~p~~~~ll~Rglktl~lRi--- 277 (409)
T KOG0053|consen 202 GSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELAS-RLKFLQEDLGWCEDPFDLFLLSRGLKTLHLRI--- 277 (409)
T ss_pred CcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHH-HHHHHHHHhcCCCCHHHHHHHhcCcchhhhhH---
Confidence 58999999999999999999999999999999999999777776 67788899999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcccccCC
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFFLPCS 132 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~li~~~ 132 (359)
++| .+++.++|+||+++++|.+|+|. .++++..++..-...
T Consensus 278 --~~~---------~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~ 319 (409)
T KOG0053|consen 278 --NKH---------SENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKK 319 (409)
T ss_pred --HHH---------HHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhc
Confidence 999 99999999999999999999998 467888888764333
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-26 Score=220.63 Aligned_cols=112 Identities=28% Similarity=0.362 Sum_probs=94.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecc-ccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeec
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS-ERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIG 79 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~-~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~ 79 (359)
+||++|+||++|||||+||+|||++||||+|+|++++++ +.+.. .++...+.+|++++|++||++.||++||.+||
T Consensus 181 atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~-~l~~~~~~~G~~~~p~da~ll~rgl~Tl~~R~-- 257 (386)
T PF01053_consen 181 ATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYD-RLREFRRLLGATLSPFDAWLLLRGLRTLPLRM-- 257 (386)
T ss_dssp THTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHH-HHHHHHHHHT-B--HHHHHHHHHHHTTHHHHH--
T ss_pred cceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhh-hhcchhhhcCccchHHHHHHHhcCCCcHHHHH--
Confidence 589999999999999999999999999999999999887 45543 45677889999999999999999999999999
Q ss_pred ccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ ++++++|++||+++|.|.+|+|. .++++..++.
T Consensus 258 ---~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~ 294 (386)
T PF01053_consen 258 ---ERQ---------NENAEALAEFLEEHPKVKRVYYPGLPSHPQHELA 294 (386)
T ss_dssp ---HHH---------HHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHH
T ss_pred ---HHH---------HHHHHHHHHHHHhCCCCCeEEEcccccccceeee
Confidence 999 99999999999999999999997 3556655554
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-25 Score=214.63 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=97.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++|+|++||||+++||+|||++||||+++|+++.+++. ++ .+......+|++++|++|||++||++||.+||
T Consensus 189 a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~-~~-~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~--- 263 (395)
T PRK08114 189 AAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARC-WE-QLRENSYLMGQMVDADTAYMTSRGLRTLGVRL--- 263 (395)
T ss_pred ccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHH-HH-HHHHHHHhccCCCCHHHHHHHHcCCCcHHHHH---
Confidence 47999999999999999999999999999999988776553 33 34456778999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
++| ++++.+|++||++||.|.+|+|. .++++..++
T Consensus 264 --~~~---------~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~ 299 (395)
T PRK08114 264 --RQH---------EESSLKVAEWLAEHPEVARVNHPALPGCKGHEF 299 (395)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCEeEEECCCCCCCccHHH
Confidence 999 99999999999999999999996 356666654
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-25 Score=213.53 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=98.0
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++|+|++||||||+||+|||++||||+++|+++.+++ +++ .+....+++|++++|++||+++||++||.+||
T Consensus 189 a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~-~l~~~~~~~G~~~~p~da~l~~rgl~Tl~lR~--- 263 (395)
T PRK05967 189 ATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEK-CWP-QLLEAHGTLGLCAGPDDTYQILRGLRTMGIRL--- 263 (395)
T ss_pred cCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHH-HHHHHHHHcCCCCCHHHHHHHHcCcccHHHHH---
Confidence 4799999999999999999999999999999998877654 333 34456778999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||+++|.|.+|+|. ..+++..+++
T Consensus 264 --~~~---------~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~ 300 (395)
T PRK05967 264 --EHH---------RKSALEIARWLEGRPDVARVLHPALPSFPGHEIW 300 (395)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHH
Confidence 999 99999999999999999999997 3566666654
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-25 Score=211.39 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=97.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.|+|+++|||+++||+|||++||||+|+|+++.+++ +++ .+......+|++++|++|||+.||++||++||
T Consensus 186 a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~-~~~-~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~--- 260 (394)
T PRK09028 186 ASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEK-HWD-QLREHSYLMGQCTSPDDVYLAMRGLRTLGVRL--- 260 (394)
T ss_pred cccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHH-HHH-HHHHHHHhcCCCCCHHHHHHHHcccCcHHHHH---
Confidence 4789999999999999999999999999999998765544 333 34456678899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||+++|.|.+|+|. .++++..+++
T Consensus 261 --~~~---------~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~ 297 (394)
T PRK09028 261 --AQH---------EKNALKVANWLATRPEVDHVRHPAFETCPGHEFF 297 (394)
T ss_pred --HHH---------HHHHHHHHHHHhcCCCccEEECCCCCCCccHHHH
Confidence 999 99999999999999999999997 3567776654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-23 Score=199.65 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=99.8
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|||+++||+|||++||+|+++|+++++++++++ .+..+...+|.+++|++||+++||++||.+||
T Consensus 178 ~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~-~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~lR~--- 253 (388)
T PRK08861 178 LTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAE-ELAWWGNCIGATGTPFDSYMTLRGIRTLGARM--- 253 (388)
T ss_pred cccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHH-HHHHHHhccCCCCChHHHHHHHhcCCCHHHHH---
Confidence 36889999999999999999999999999999999887766654 45567778899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||+++|.|.+|+|. .++++..+++
T Consensus 254 --~~~---------~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~ 290 (388)
T PRK08861 254 --RVH---------EESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIA 290 (388)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHH
Confidence 999 99999999999999999999997 4566666553
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-22 Score=196.30 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=93.5
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee------------------------------eEEEEe
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR------------------------------HTISVF 50 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~------------------------------~~l~~~ 50 (359)
+||++++|+++|||||+||+|||++||+|+++|++++...+-|. +.....
T Consensus 187 ~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (432)
T PRK06702 187 ATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266 (432)
T ss_pred CchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHH
Confidence 58999999999999999999999999999999999854432110 001134
Q ss_pred ecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCc
Q 018198 51 VGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEP 126 (359)
Q Consensus 51 ~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el 126 (359)
.++.|.+++|++||+++||++||.+|| +++ .+|+++|++||++++.|.+|+|.. .+++..++
T Consensus 267 ~~~~g~~~sp~~a~l~~rgL~Tl~lR~-----~r~---------~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l 329 (432)
T PRK06702 267 LRDYGNCMSPFNAYISNIGLETLHLRM-----ERH---------SENALAVAKWLADHERIEWVNYPGLDSNENYSL 329 (432)
T ss_pred HHHccCCCCHHHHHHHHhccCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCcceEECCCCCCCccHHH
Confidence 567899999999999999999999999 999 999999999999999999998863 45555544
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=183.84 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceee----------------------------------E
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRH----------------------------------T 46 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~----------------------------------~ 46 (359)
++|..++|+++|||++++|+|||++||+|++||+++++.+..|+. .
T Consensus 195 a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (437)
T PRK05613 195 ATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKA 274 (437)
T ss_pred ccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHH
Confidence 368889999999999999999999999999999998654321100 0
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCC
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLE 125 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~e 125 (359)
+....+++|++++|++|||++||++||.+|| +++ ++++++|++||+++|.|.+|+|. ..+++..+
T Consensus 275 ~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~-----~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~ 340 (437)
T PRK05613 275 RAGLLRDTGATLSPFNAWVTAQGLDTLSLRL-----ERH---------NENAIKVAEFLNNHEKVAKVNFAGLKDSPWYA 340 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcccCcHHHHH-----HHH---------HHHHHHHHHHHHcCCCcceEECCCCCCCccHH
Confidence 1134567899999999999999999999999 999 99999999999999999999996 34556555
Q ss_pred cc
Q 018198 126 PF 127 (359)
Q Consensus 126 l~ 127 (359)
+.
T Consensus 341 ~~ 342 (437)
T PRK05613 341 TK 342 (437)
T ss_pred HH
Confidence 43
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-21 Score=182.26 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=97.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|+++||+|||++||+|+++|+++++++.+. .+.....++|.+++|++||+.+||++|+.+||
T Consensus 175 a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~--~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~--- 249 (377)
T TIGR01324 175 AAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWD--QLREHSYLMGQMVDADDAYTTLRGLRTLGVRL--- 249 (377)
T ss_pred ccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHH--HHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHH---
Confidence 4688999999999999999999999999999999988776543 23345678899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ ++++.++++||++++.|.+|+|. .++++..++
T Consensus 250 --~~~---------~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~ 285 (377)
T TIGR01324 250 --KQH---------QESSLAIAKWLSEQPEVARVLHPALPSCPGHEF 285 (377)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCcCEEECCCCCCCccHHH
Confidence 999 99999999999999999999997 356666665
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-20 Score=179.53 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=93.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|+|+++||+|||++||+|++||+|+++++++++ .++.+++++|..++|++||+.+||++||.+||
T Consensus 186 ~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~-~~~~~~~~~G~~~~~~~A~l~~~gL~tL~~R~--- 261 (384)
T PRK06434 186 ASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFN-NLVERRKTLGSNPDPIQAYLALRGLKTLGLRM--- 261 (384)
T ss_pred CCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHH-HHHHHHHhcCCCCCHHHHHHHHhCCCcHHHHH---
Confidence 47999999999999999999999999999999999987776654 34445568899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ ++++++++++|+.+|.|.+|+|.
T Consensus 262 --~r~---------~~~a~~~a~~L~~~p~v~~V~yP 287 (384)
T PRK06434 262 --EKH---------NKNGMELARFLRDSKKISNVYYP 287 (384)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCccEEECC
Confidence 999 99999999999999999999995
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-20 Score=178.98 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=95.3
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee-----------------------------eEEEEee
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR-----------------------------HTISVFV 51 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~-----------------------------~~l~~~~ 51 (359)
++|++++|+++|||+++||+|||++||||+++|+++.+...-++ +.+....
T Consensus 195 a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (436)
T PRK07812 195 ATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLL 274 (436)
T ss_pred cccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999865431100 0011346
Q ss_pred cCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 52 GDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 52 ~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
+++|++++|++||+++||++||.+|| +++ ++++++|+++|+++|.|.+|+|. ..+++..++..
T Consensus 275 ~~~G~~l~p~~a~l~~rgl~tL~~R~-----~~~---------~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~ 338 (436)
T PRK07812 275 RDLGSAISPFNAFLIAQGLETLSLRI-----ERH---------VANAQRVAEFLEARDEVASVNYAGLPSSPWYERAK 338 (436)
T ss_pred HhcCCCCCHHHHHHHhcCcCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHH
Confidence 68899999999999999999999999 999 99999999999999999999886 35666666543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-20 Score=177.50 Aligned_cols=102 Identities=31% Similarity=0.443 Sum_probs=92.7
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|||+++||+|||++||+|+++|+|+++++++++ .+...+...|.+++|++||+.+||++||.+||
T Consensus 176 ~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~-~~~~~~~~~G~~~s~~~a~l~~~~L~tL~~r~--- 251 (364)
T PRK07269 176 YSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYE-KLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRM--- 251 (364)
T ss_pred cccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHH-HHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHH---
Confidence 47899999999999999999999999999999999988776655 33445557799999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ +++++++++||++++.|.+|.|.
T Consensus 252 --~~~---------~~na~~~a~~L~~~p~v~~v~yp 277 (364)
T PRK07269 252 --ERS---------TANAQEVVAFLKKSPAVKEVLYT 277 (364)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEeCC
Confidence 999 99999999999999999999985
|
|
| >KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-18 Score=161.97 Aligned_cols=205 Identities=36% Similarity=0.451 Sum_probs=167.0
Q ss_pred CchhhhhHHHhhhcCCCeeEEEEeeeeecC--Ccc-cccccceEEEEEEeCCCEEEecccccCCCC-----------eEE
Q 018198 148 LQMDELETIRIFEENISSVVWIGNLGIRED--QSE-TEFLRGSGAGFLWDQDGHIVTNYHVICGAS-----------TVK 213 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~~svV~I~~~~~~~~--~~~-~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~-----------~~~ 213 (359)
.+.....+.++.++-..|+|.|+...-... ++. .+.+...||||+++.+|.++||+||+.... .+.
T Consensus 123 ~~k~~~~v~~~~~~cd~Avv~Ie~~~f~~~~~~~e~~~ip~l~~S~~Vv~gd~i~VTnghV~~~~~~~y~~~~~~l~~vq 202 (473)
T KOG1320|consen 123 PRKYKAFVAAVFEECDLAVVYIESEEFWKGMNPFELGDIPSLNGSGFVVGGDGIIVTNGHVVRVEPRIYAHSSTVLLRVQ 202 (473)
T ss_pred chhhhhhHHHhhhcccceEEEEeeccccCCCcccccCCCcccCccEEEEcCCcEEEEeeEEEEEEeccccCCCcceeeEE
Confidence 344456778899999999999997432211 122 256788999999999999999999985322 366
Q ss_pred EEecCC--cEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCC
Q 018198 214 VSFSDQ--STFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG 291 (359)
Q Consensus 214 v~~~~g--~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~ 291 (359)
+...+| ++.++.+...|+..|+|+++++.+....++++++.+..+..|+++..+|.|++...+.+.|.++...|....
T Consensus 203 i~aa~~~~~s~ep~i~g~d~~~gvA~l~ik~~~~i~~~i~~~~~~~~~~G~~~~a~~~~f~~~nt~t~g~vs~~~R~~~~ 282 (473)
T KOG1320|consen 203 IDAAIGPGNSGEPVIVGVDKVAGVAFLKIKTPENILYVIPLGVSSHFRTGVEVSAIGNGFGLLNTLTQGMVSGQLRKSFK 282 (473)
T ss_pred EEEeecCCccCCCeEEccccccceEEEEEecCCcccceeecceeeeecccceeeccccCceeeeeeeecccccccccccc
Confidence 777665 889999999999999999999765544788888888999999999999999999999999999988876551
Q ss_pred ------cccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHH
Q 018198 292 ------RLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 292 ------~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
....+.+++|+.+.+|+||+|++|.+|++||+++.... +-..+++|++|.+.+...+.+..
T Consensus 283 lg~~~g~~i~~~~qtd~ai~~~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~ 351 (473)
T KOG1320|consen 283 LGLETGVLISKINQTDAAINPGNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLG 351 (473)
T ss_pred cCcccceeeeeecccchhhhcccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhh
Confidence 34557899999999999999999999999999888762 22357899999999998888774
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-19 Score=172.79 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=91.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccc-c------ee-------------eEEEEeecCCCCccch
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER-V------QR-------------HTISVFVGDESGILSR 60 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~-~------~~-------------~~l~~~~~~~G~~lsp 60 (359)
++|+.++|+++|+|+++||+|||++||+|+++|+++.+... + .. +......+++|++++|
T Consensus 171 a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p 250 (397)
T PRK05939 171 TSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSS 250 (397)
T ss_pred ccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCH
Confidence 36888999999999999999999999999999998754321 0 00 0001123478999999
Q ss_pred hhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 61 IDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 61 ~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
++|||+.||++||.+|| ++| .+++++|++||+++|.|.+|+|. .++++..++
T Consensus 251 ~~a~l~~rgl~tl~~R~-----~~~---------~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~ 303 (397)
T PRK05939 251 EAAHRIAIGAETLALRV-----DRS---------CSNALALAQFLEAHPKVARVYYPGLASHPQHAR 303 (397)
T ss_pred HHHHHHHcCcCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCchHHH
Confidence 99999999999999999 999 99999999999999999999996 245555444
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-19 Score=175.19 Aligned_cols=112 Identities=25% Similarity=0.306 Sum_probs=98.5
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|||+++||+|||++||+|+++|.++++++.+.+ .+....++.|.+++|+++|+++||++||.+||
T Consensus 177 ~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~-~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~R~--- 252 (386)
T PRK08045 177 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT-ELAWWANNIGVTGGAFDSYLLLRGLRTLVPRM--- 252 (386)
T ss_pred CccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhhccHHHHH---
Confidence 36788999999999999999999999999999999886665544 34556788899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ ++++++|++||++++.|.+|+|. ..+++..+++
T Consensus 253 --~~~---------~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~ 289 (386)
T PRK08045 253 --ELA---------QRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIA 289 (386)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHH
Confidence 999 99999999999999999999997 3566666653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-19 Score=176.27 Aligned_cols=114 Identities=28% Similarity=0.293 Sum_probs=95.5
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee-------------------------------eEEEE
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR-------------------------------HTISV 49 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~-------------------------------~~l~~ 49 (359)
++|+.++|+++|+|+++||+|||++||||.+||+++.+.+..+. ..+..
T Consensus 189 a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (431)
T PRK08248 189 ASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQ 268 (431)
T ss_pred CccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHH
Confidence 36889999999999999999999999999999998875543210 00112
Q ss_pred eecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 50 FVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 50 ~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
...++|++|+|++||+++||++||.+|| +++ ++++++|+++|++++.|.+|+|. ..+++..+++.
T Consensus 269 ~~~~~G~~l~p~~a~l~~rgl~tl~~R~-----~~~---------~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~ 334 (431)
T PRK08248 269 LLRDLGAALSPFNSFLLLQGLETLHLRM-----ERH---------SENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAK 334 (431)
T ss_pred HHHhcCCCCCHHHHHHHhcCcCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHH
Confidence 4567899999999999999999999999 999 99999999999999999999986 35666666543
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-18 Score=170.54 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=93.9
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccc-ceee--E---E--------------------------E
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER-VQRH--T---I--------------------------S 48 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~-~~~~--~---l--------------------------~ 48 (359)
++|++++|+++|+|+++||+|||++||+|++||+++.+... +... . + .
T Consensus 183 a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (425)
T PRK06084 183 ATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRV 262 (425)
T ss_pred cccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHH
Confidence 46889999999999999999999999999999999875431 1100 0 0 0
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
.....+|+.|+|++||+++||++||.+|| +++ ++++++++++|++++.|.+|+|. ..+++..++.
T Consensus 263 ~~~~~~g~~l~~~~a~l~lrgl~tl~~R~-----~~~---------~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~ 328 (425)
T PRK06084 263 VPLRNMGAALSPFNAFLILQGLETLALRM-----ERH---------TENALKVARYLQQHPQVAWVKYAGLPDHPEHELA 328 (425)
T ss_pred HHHHhcCCCCCHHHHHHHHcCcCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCcccHHHH
Confidence 11346899999999999999999999999 999 99999999999999999999986 3566666654
Q ss_pred c
Q 018198 128 F 128 (359)
Q Consensus 128 l 128 (359)
.
T Consensus 329 ~ 329 (425)
T PRK06084 329 R 329 (425)
T ss_pred H
Confidence 3
|
|
| >PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-17 Score=131.71 Aligned_cols=109 Identities=36% Similarity=0.508 Sum_probs=74.8
Q ss_pred EEEEEEeCCCEEEecccccC--------CCCeEEEEecCCcEEE--EEEEEEcCC-CCEEEEEEcCCCCCccceEecCCC
Q 018198 188 GAGFLWDQDGHIVTNYHVIC--------GASTVKVSFSDQSTFY--AQVVGHDQV-NDLAVLHIDAPNHELRPIHVSVSA 256 (359)
Q Consensus 188 GsGfii~~~g~vlT~~Hvv~--------~~~~~~v~~~~g~~~~--~~v~~~d~~-~DlAll~v~~~~~~~~~~~l~~~~ 256 (359)
||||+|+++|+||||+||+. ....+.+...++.... ++++..++. .|+|||+++
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~All~v~--------------- 65 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDWNDGKQPDNSSVEVVFPDGRRVPPVAEVVYFDPDDYDLALLKVD--------------- 65 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCCTT--G-TCSEEEEEETTSCEEETEEEEEEEETT-TTEEEEEES---------------
T ss_pred CEEEEEcCCceEEEchhheecccccccCCCCEEEEEecCCCEEeeeEEEEEECCccccEEEEEEe---------------
Confidence 89999999899999999998 4567888888888888 999999999 999999999
Q ss_pred CCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEE
Q 018198 257 DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGV 323 (359)
Q Consensus 257 ~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi 323 (359)
.....+.. ......................+ +++.+.+|+|||||||.+|+||||
T Consensus 66 ------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 66 ------PWTGVGGG-----VRVPGSTSGVSPTSTNDNRMLYI-TDADTRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp ------CEEEEEEE-----EEEEEEEEEEEEEEEEETEEEEE-ESSS-STTTTTSEEEETTSEEEEE
T ss_pred ------cccceeee-----eEeeeeccccccccCcccceeEe-eecccCCCcEeHhEECCCCEEEeC
Confidence 00000000 00000000000000000001114 799999999999999999999997
|
... |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-19 Score=170.47 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=93.3
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|+++||+|||++||+|+++|+++++++.+++ .++.+.+.+|+.++|+++|+++||++|+.+||
T Consensus 190 a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~-~~~~~~~~~G~~~~~~~a~l~lr~l~tl~~Rl--- 265 (394)
T PRK07050 190 SAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHA-KLKLARMRLGIGVSADDCSLVLRGLPSLQVRL--- 265 (394)
T ss_pred ccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHH-HHHHHHHhcCCCCCHHHHHHHHcCCCcHHHHH---
Confidence 46889999999999999999999999999999999988777655 44556677899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ ++++.+|++||++++.|.+|+|.
T Consensus 266 --~~~---------~~~a~~la~~L~~~p~v~~v~~p 291 (394)
T PRK07050 266 --AAH---------DRSALEVAEWLKARPEIATVLHP 291 (394)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEECC
Confidence 999 99999999999999999999985
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-19 Score=170.50 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=97.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|+++||+|||++||||++||+|+++++.+.+ .+..+.+++|..++|++||+.+||++|+.+||
T Consensus 195 a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~-~l~~~~~~~g~~~s~~~a~l~l~~L~tl~~R~--- 270 (403)
T PRK07810 195 ATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDG-PVQKLMRHTGPALSAFNAWVLLKGLETLALRV--- 270 (403)
T ss_pred CccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHH-HHHHHHHHhCCCCCHHHHHHHHhccCcHHHHH---
Confidence 46889999999999999999999999999999999988765543 34445678899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .++++++++||++++.|.+|+|. ..+++..++
T Consensus 271 --~~~---------~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~ 306 (403)
T PRK07810 271 --RHS---------NASALRIAEFLEGHPAVRWVRYPFLPSHPQYDL 306 (403)
T ss_pred --HHH---------HHHHHHHHHHHhcCCCccEEECCCCCCCccHHH
Confidence 999 99999999999999999999996 345565554
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-17 Score=119.94 Aligned_cols=74 Identities=27% Similarity=0.378 Sum_probs=70.1
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEE-CChhHHHHHHHHHhhhhceeeeeec
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVF-GTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+|+++.+++|..|+|+++.+.|.+||||+.||.+++++ ++.+||||+++ +|++.++||.|||+|+++|.+|..+
T Consensus 2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~ 77 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECY 77 (84)
T ss_pred cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEe
Confidence 57899999999999999999999999999999999877 88999999998 9999999999999999999999943
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-18 Score=167.43 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|+|++++|+|||++||+|++||+++++++.+.+ .+..+.+.+|..++|++||+.+||++++.+||
T Consensus 177 a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~-~~~~~~~~~g~~~~p~~a~l~l~~l~tL~~R~--- 252 (385)
T PRK08574 177 ATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLE-ELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRF--- 252 (385)
T ss_pred CccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHH-HHHHHHHhcCCCCCHHHHHHHHcccCcHHHHH---
Confidence 46888999999999999999999999999999987776666654 34445666899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .++++++++||++++.|.+|+|. ..+++.+++
T Consensus 253 --~~~---------~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~ 288 (385)
T PRK08574 253 --ERQ---------CRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGV 288 (385)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCcCEEECCCCCCCchHHH
Confidence 999 99999999999999999999996 345555444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-18 Score=168.54 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=92.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceee-------------------------------EEEE
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRH-------------------------------TISV 49 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~-------------------------------~l~~ 49 (359)
++|++++|+++|||+++||+|||++||+|++||+++......+.. .+..
T Consensus 189 a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 268 (433)
T PRK08134 189 TTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARRE 268 (433)
T ss_pred cccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHH
Confidence 478999999999999999999999999999999988543211100 0001
Q ss_pred eecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 50 FVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 50 ~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
..+++|++++|++||+++||++||.+|| +++ .+++.+++++|++++.|.+|.|. ..+++..++.
T Consensus 269 ~~~~~G~~ls~~~A~l~~~gL~tl~~R~-----~~~---------~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~ 333 (433)
T PRK08134 269 GLRDFGACLSPMNAWQLLQGIETLPLRM-----ERH---------VANTRKVVAFLASHPAVARVAHPELESHPDHALA 333 (433)
T ss_pred HHHhcCCCCCHHHHHHHhcCCCcHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 2357899999999999999999999999 999 99999999999999999999886 3455655543
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-18 Score=169.79 Aligned_cols=112 Identities=34% Similarity=0.454 Sum_probs=97.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|+++||+|||++||+|+++|+++++++.+.+ .+..+.+..|+.++|++||+.+||++||.+||
T Consensus 257 a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~-~~~~~~~~~g~~l~p~~A~l~lr~L~tL~~R~--- 332 (464)
T PLN02509 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK-EVYFLQNSEGSGLAPFDCWLCLRGIKTMALRI--- 332 (464)
T ss_pred cccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHH-HHHHHHHhcCCCcCHHHHHHHHhhhhhHHHHH---
Confidence 46888999999999999999999999999999999987766544 33345555688899999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .++++.++++|+++|.|.+|+|. .++++..+++
T Consensus 333 --~r~---------~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~ 369 (464)
T PLN02509 333 --EKQ---------QENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH 369 (464)
T ss_pred --HHH---------HHHHHHHHHHHhcCCCccEEECCCCCCCccHHHH
Confidence 999 99999999999999999999997 4566666654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-18 Score=166.18 Aligned_cols=111 Identities=24% Similarity=0.315 Sum_probs=98.2
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|+++|.++++++.+.+ .+..+...+|.+++|+++|+++||++||.+||
T Consensus 177 ~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~-~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~R~---- 251 (382)
T TIGR02080 177 SPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAE-ELAWWANNLGVTGGAFDSYLTLRGLRTLVARM---- 251 (382)
T ss_pred ccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHH-HHHHHHHccCCCCCHHHHHHHHcccchHHHHH----
Confidence 5778899999999999999999999999999998887766654 44556677899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .+++.++++||++++.|.+|+|. ..+++..+++
T Consensus 252 -~~~---------~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~ 288 (382)
T TIGR02080 252 -RLQ---------QRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIA 288 (382)
T ss_pred -HHH---------HHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHH
Confidence 999 99999999999999999999997 3566666654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-18 Score=164.19 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=92.7
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeecccc-ceee------------------------------EEEE
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER-VQRH------------------------------TISV 49 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~-~~~~------------------------------~l~~ 49 (359)
++|+.++|+++|+|+++||+|||++||+|++||+++..... |... ....
T Consensus 188 a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (427)
T PRK05994 188 ASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVL 267 (427)
T ss_pred cccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHH
Confidence 46889999999999999999999999999999998853321 1100 0011
Q ss_pred eecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCcc
Q 018198 50 FVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEPF 127 (359)
Q Consensus 50 ~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el~ 127 (359)
..+++|..|+|++||+.+||++||.+|| +++ ++++++++++|+++|.|.+|+|.. .+++..++.
T Consensus 268 ~~~~~G~~~~~~~A~l~~~~l~tL~~r~-----~~~---------~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~ 332 (427)
T PRK05994 268 GLRDLGPAISPFNAFLILTGIETLPLRM-----QRH---------SDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALA 332 (427)
T ss_pred HHHhcCCCCCHHHHHHHHcCcccHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 2457899999999999999999999999 999 999999999999999999998863 455555553
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-18 Score=165.06 Aligned_cols=111 Identities=28% Similarity=0.382 Sum_probs=96.7
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|+++|+++++++.+.+ .+..+++..|..++|+++|+..||++|+.+||
T Consensus 174 a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~-~~~~~~~~~G~~~~~~~~~l~~~gl~tl~~R~--- 249 (380)
T PRK06176 174 ATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQ-EIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRM--- 249 (380)
T ss_pred cccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHH-HHHHHHHHhcCCCCHHHHHHHHhccCcHHHHH---
Confidence 36788999999999999999999999999999999987766654 44556677799999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el 126 (359)
+++ ++++.++++||++++.|.+|+|.. .+++..++
T Consensus 250 --~~~---------~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~ 285 (380)
T PRK06176 250 --EAH---------QKNALCVAEFLEKHPKVEKVYYPGLPTHPNHEL 285 (380)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEECCCCCCCccHHH
Confidence 999 899999999999999999999862 45555554
|
|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=114.79 Aligned_cols=74 Identities=32% Similarity=0.512 Sum_probs=69.8
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+|++..+++|.+|+|+++.+.|.+||||+.||.+++++ ++.+||||++.++++.++||.+||+|++||.+|.++
T Consensus 2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 47899999999999999999999999999999998877 788999999999999999999999999999999863
|
|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=128.82 Aligned_cols=92 Identities=38% Similarity=0.539 Sum_probs=86.6
Q ss_pred ceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-C
Q 018198 42 VQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-S 119 (359)
Q Consensus 42 ~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~ 119 (359)
.++|.++.++.|..|+|++..++|.+||||+.||.+++++ ++.+||||++.+|+..++||.|||+|++||.+|.++. .
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 3567999999999999999999999999999999999877 7789999999999999999999999999999999995 6
Q ss_pred CCCCCCcccccCCC
Q 018198 120 SSSSLEPFFLPCSG 133 (359)
Q Consensus 120 ~~~~~el~li~~~~ 133 (359)
.+..||++|+|+.+
T Consensus 82 ~~veRel~LiKv~~ 95 (163)
T COG0440 82 PHVERELALIKVSA 95 (163)
T ss_pred chhheeeEEEEEec
Confidence 89999999999985
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-18 Score=161.29 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=97.0
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|+++|.++++++++.+ .+..++...|+.++|+++|+.+||++|+.+||
T Consensus 173 ~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~-~l~~~~~~~g~~~~~~~a~l~~r~l~tl~~R~---- 247 (366)
T PRK07582 173 TPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMA-AVERWRLLAGAIPGPFEAWLAHRSLGTLGLRF---- 247 (366)
T ss_pred CccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHH-HHHHHHHHhCCCCCHHHHHHHHhccccHHHHH----
Confidence 5778899999999999999999999999999998886655544 44556678899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCcc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEPF 127 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el~ 127 (359)
+++ +++++++++||++++.|.+|+|.. .+++..+++
T Consensus 248 -~~~---------~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~ 284 (366)
T PRK07582 248 -ARQ---------CANALAVAELLAGHPAVRGVRYPGLPGDPAHEVA 284 (366)
T ss_pred -HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 999 999999999999999999999973 566655543
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-17 Score=161.25 Aligned_cols=111 Identities=26% Similarity=0.355 Sum_probs=96.9
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|++++|+++|+|++++|+|||++||+|+++|.++++++.+.+ .+..++...|++++|++||+++||++|+.+||
T Consensus 175 ~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~-~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~R~---- 249 (377)
T PRK07671 175 TPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAE-DLHFVQNSTGGILGPQDSWLLLRGLKTLGIRM---- 249 (377)
T ss_pred ccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHH-HHHHHHHhhcCCCCHHHHHHHHcCcChHHHHH----
Confidence 5788999999999999999999999999999998887766654 44556677799999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCcc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEPF 127 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el~ 127 (359)
+++ +++++.|++||++++.|.+|+|.. .+++..+++
T Consensus 250 -~~~---------~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~ 286 (377)
T PRK07671 250 -EEH---------ETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELA 286 (377)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence 999 999999999999999999998863 455555543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-17 Score=159.75 Aligned_cols=112 Identities=29% Similarity=0.413 Sum_probs=97.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|+|++++|+|||++||+|+++|+++++++.+.+ .+..+++..|..++|++||+++||++|+.+|+
T Consensus 171 ~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~-~~~~~~~~~G~~~~~~~a~l~~~~l~tl~~R~--- 246 (378)
T TIGR01329 171 MSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAK-KVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRI--- 246 (378)
T ss_pred cccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHH-HHHHHHHhcCCcCCHHHHHHHHccCCCHHHHH---
Confidence 36888999999999999999999999999999999887766644 34455566899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .+++++|++||++++.|.+|.|. .++++..++.
T Consensus 247 --e~~---------~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~ 283 (378)
T TIGR01329 247 --EKQ---------QENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLH 283 (378)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 999 99999999999999999999886 3566666553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-17 Score=159.17 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=96.8
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|..++|+++|||++++|+|||++||+|+++|.++++++++.+ .+.......|..++|+++|+.+||++++.+||
T Consensus 186 ~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~-~l~~~~~~~g~~~s~~~a~l~~~gl~tl~~r~---- 260 (405)
T PRK08776 186 SPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQ-QLVWWANALGLTGSPFDAFLTLRGLRTLDARL---- 260 (405)
T ss_pred ccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhhCcHHHHH----
Confidence 5778899999999999999999999999999999887766654 34445566788999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .++++++++||++++.|.+|.|. ..+++..++.
T Consensus 261 -~~~---------~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~ 297 (405)
T PRK08776 261 -RVH---------QENADAIAALLDGHAAVNQVYYPGLASHPGHALA 297 (405)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHH
Confidence 999 99999999999999999999997 3566666553
|
|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-16 Score=115.99 Aligned_cols=75 Identities=29% Similarity=0.531 Sum_probs=69.9
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ 118 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~ 118 (359)
.+++++.+++|.+|+|+++.+.|.+||||+.||.+++++ ++.+||||++. +++.++||.|||+|++||.+|.++.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~ 82 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQ 82 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECC
Confidence 347899999999999999999999999999999998877 77899999998 5789999999999999999999985
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-17 Score=157.07 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=96.2
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|++++|+++|+|++++|+|||++||||.+||+++++++.+.+ .+..+.++.|..++|++||+.+||++|+.+|+
T Consensus 191 ~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~-~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~R~---- 265 (398)
T PRK07504 191 TPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEE-HLQDYFRHTGPSLSPFNAWTLLKGLETLPVRV---- 265 (398)
T ss_pred ccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHH-HHHHHHHHhCCCCCHHHHHHHHhccchHHHHH----
Confidence 5788999999999999999999999999999999887765543 34445677899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .++++++++||++++.|.+|+|. ..+++..++
T Consensus 266 -~~~---------~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~ 301 (398)
T PRK07504 266 -RQQ---------TESAAAIADFLAGHPKVARVIYPGRADHPQADI 301 (398)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCccEEECCCCCCCccHHH
Confidence 999 99999999999999999999997 345555544
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-16 Score=155.89 Aligned_cols=109 Identities=23% Similarity=0.276 Sum_probs=94.4
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+||++||+|||++||+|+++|.++++.+ +.+ .+.......|++++|+++|+++||++++.+||
T Consensus 221 ~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~-l~~-~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~---- 294 (427)
T PRK07049 221 GPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKA-LIR-QVRALRSAIGTQLDPHSCWMLGRSLETLVLRM---- 294 (427)
T ss_pred ccccCCccccCCCEEEEcCceeecCCCCcEEEEEECCHH-HHH-HHHHHHHhcCCCCCHHHHHHHHcCCChHHHHH----
Confidence 678899999999999999999999999999999987654 333 34456677899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-c--CCCCCCCc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-Q--SSSSSLEP 126 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~--~~~~~~el 126 (359)
+++ .+++++|+++|++++.|.+|+|. . ++++..++
T Consensus 295 -~~~---------~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~ 332 (427)
T PRK07049 295 -ERA---------NRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAV 332 (427)
T ss_pred -HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHH
Confidence 899 99999999999999999999996 2 45554444
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-16 Score=154.05 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|.+||+++++++.+. .+....+..|..++|+++|+++||++|+.+|+
T Consensus 180 ~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~--~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~---- 253 (380)
T TIGR01325 180 TPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMA--EVAVYLRHTGPAMSPFNAWVLLKGLETLSLRM---- 253 (380)
T ss_pred ccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHH--HHHHHHHhhCCCCCHHHHHHHHhccCcHHHHH----
Confidence 578899999999999999999999999999999998776442 23445567899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .+++++++++|++++.|.+|+|. .++++..++
T Consensus 254 -~~~---------~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~ 289 (380)
T TIGR01325 254 -QKQ---------FDSALAIAEWLQAQPQVQAVYYPGLPDHPQHEL 289 (380)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCccEEECCCCCCCccHHH
Confidence 999 99999999999999999999996 345655554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-16 Score=154.14 Aligned_cols=110 Identities=24% Similarity=0.367 Sum_probs=95.1
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|+++|.++.+++.+.+ .+..++...|.+++|+++|+..||++|+++||
T Consensus 179 ~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~-~l~~~~~~~g~~~~~~~a~l~~~gl~tl~~R~---- 253 (390)
T PRK08064 179 TPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQ-KLYFLQNSFGAVLGVQDCWLVLRGLKTLHVRL---- 253 (390)
T ss_pred cccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHcccCcHHHHH----
Confidence 5777899999999999999999999999999998877655544 44556667899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEP 126 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el 126 (359)
+++ .+++++|++||++++.|.+|+|.. ++++..++
T Consensus 254 -~~~---------~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~ 289 (390)
T PRK08064 254 -EHS---------SETANKIALYLQEHPKVQNVYYPGLQTHLGFDI 289 (390)
T ss_pred -HHH---------HHHHHHHHHHHhcCCCcceEECCCCCCCccHHH
Confidence 999 999999999999999999999963 44444443
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-15 Score=122.29 Aligned_cols=90 Identities=39% Similarity=0.566 Sum_probs=84.7
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCC
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSS 121 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~ 121 (359)
+|++..+++|.+|+|+++...|.+||||+.|+.+++.+ ++.+|||+++++|++.++||.+||+|+++|.+|.++. .+.
T Consensus 2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~~ 81 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEAH 81 (161)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcch
Confidence 46889999999999999999999999999999998876 7889999999999999999999999999999999984 689
Q ss_pred CCCCcccccCCC
Q 018198 122 SSLEPFFLPCSG 133 (359)
Q Consensus 122 ~~~el~li~~~~ 133 (359)
.+||++|+|+..
T Consensus 82 v~rEl~LiKv~~ 93 (161)
T PRK11895 82 VERELALVKVRA 93 (161)
T ss_pred hheEEEEEEEEC
Confidence 999999999984
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-16 Score=152.01 Aligned_cols=111 Identities=31% Similarity=0.372 Sum_probs=94.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|+++|+++++++.+.+ .+....+.+|+.++|+++|+.+|+++++..|+
T Consensus 165 ~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~-~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~--- 240 (369)
T cd00614 165 ATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQ-RLRFLRLALGTILSPFDAWLLLRGLKTLPLRM--- 240 (369)
T ss_pred cchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHH-HHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH---
Confidence 36788899999999999999999999999999999987744443 34445567899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~el 126 (359)
+++ .+++++++++|++++.|.+|+|.. .+++..++
T Consensus 241 --~~~---------~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~ 276 (369)
T cd00614 241 --ERH---------SENALKVAEFLEKHPKVERVYYPGLPSHPQHEL 276 (369)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCccEEECCCCCCCchHHH
Confidence 999 999999999999999999999852 34444443
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-16 Score=152.05 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=96.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|.+||+++++++.+. .+....+..|..++|+++|+++||++|+.+||
T Consensus 186 ~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~--~~~~~~~~~g~~~~~~~a~~~l~gl~tl~~R~--- 260 (390)
T PRK08133 186 CTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELME--EVFGFLRTAGPTLSPFNAWVFLKGLETLSLRM--- 260 (390)
T ss_pred cccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHH--HHHHHHHHhCCCCCHHHHHHHHcccchHHHHH---
Confidence 3678899999999999999999999999999999998776543 23456677899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .+++.++++||++++.|.+|+|. ..+++..+++
T Consensus 261 --~~~---------~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~ 297 (390)
T PRK08133 261 --EAH---------SANALALAEWLEAHPGVERVFYPGLPSHPQHELA 297 (390)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHH
Confidence 999 99999999999999999999986 3456666554
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-16 Score=152.17 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=95.3
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|.++|.++++.+ +.+ .+..+....|..++|+++|+.+||++++.+|+
T Consensus 190 ~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~-l~~-~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~R~---- 263 (398)
T PRK08249 190 TPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKE-LME-QVYHYREINGATMDPMSAYLILRGMKTLKLRV---- 263 (398)
T ss_pred ccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHH-HHH-HHHHHHHhcCCCCCHHHHHHHHhCcchHHHHH----
Confidence 578889999999999999999999999999999887544 433 34445567899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .+++++++++|++++.|.+|+|. ..+++..+++
T Consensus 264 -~~~---------~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~ 300 (398)
T PRK08249 264 -RQQ---------QESAMALAKYLQTHPKVEAVYYPGLETHPNHEIA 300 (398)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence 999 99999999999999999999997 3566666654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-16 Score=153.21 Aligned_cols=112 Identities=22% Similarity=0.250 Sum_probs=92.3
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee------------------------------eEEEEee
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR------------------------------HTISVFV 51 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~------------------------------~~l~~~~ 51 (359)
+|++++|+++|+|++++|+|||++||+|.+||+++......+. +.....+
T Consensus 183 ~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~ 262 (418)
T TIGR01326 183 TPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLL 262 (418)
T ss_pred hhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHH
Confidence 5678899999999999999999999999999998865321100 0001245
Q ss_pred cCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 52 GDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 52 ~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+.+|+.++|++||++.||++|+.+|| +++ .+++++++++|++++.|.+|+|. ..+++..++.
T Consensus 263 ~~~G~~~~p~~a~~~~~~l~tl~~R~-----~~~---------~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~ 325 (418)
T TIGR01326 263 RDLGAALSPFNAFLLLQGLETLSLRM-----ERH---------VENALKVAEFLEAHPKVAWVNYPGLASHPHHALA 325 (418)
T ss_pred HhcCCCCCHHHHHHHHCCcccHHHHH-----HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 67899999999999999999999999 998 89999999999999999999996 3456666654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-16 Score=151.22 Aligned_cols=102 Identities=28% Similarity=0.376 Sum_probs=91.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|.++|.++++++.+.+ .+.......|+.++|+++|+.+||++++.+|+
T Consensus 186 a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~-~~~~~~~~~g~~~~~~~a~l~~~~L~tl~~r~--- 261 (386)
T PRK06767 186 CSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAE-KIRPMRKDIGGIMAPFDAWLLLRGLKTLAVRM--- 261 (386)
T ss_pred cccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHH-HHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHH---
Confidence 36888999999999999999999999999999999988776643 33345667899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++++++++|++++.|.+|+|.
T Consensus 262 --~~~---------~~~a~~la~~L~~~p~v~~v~~p 287 (386)
T PRK06767 262 --DRH---------CDNAEKIVSFLKNHDAVEGVWYP 287 (386)
T ss_pred --HHH---------HHHHHHHHHHHHcCCCccEEECC
Confidence 899 99999999999999999999984
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-16 Score=150.40 Aligned_cols=112 Identities=25% Similarity=0.367 Sum_probs=96.1
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|+|++++|+|||++||+|+++|.++++++.+.+ .+..+....|..++|+++|+.+|+++++..|+
T Consensus 186 a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~-~~~~~~~~~g~~~s~~~a~l~~~~L~tl~~R~--- 261 (388)
T PRK07811 186 ASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDE-AFAFLQNGAGAVPGPFDAYLTLRGLKTLAVRM--- 261 (388)
T ss_pred CccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHH-HHHHHHHhcCCCCCHHHHHHHHhccCcHHHHH---
Confidence 35778899999999999999999999999999998887766644 33445556799999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .++++.+++||++++.|.+|+|. ..+++..++.
T Consensus 262 --~~~---------~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~ 298 (388)
T PRK07811 262 --DRH---------SENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVA 298 (388)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHH
Confidence 888 99999999999999999999996 3456666553
|
|
| >PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=120.92 Aligned_cols=176 Identities=23% Similarity=0.291 Sum_probs=118.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEec-------CC--cEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS-------DQ--STFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~-------~g--~~~~~~v~~~d-- 230 (359)
-.|.+|.|..... ...|+|++|+++ +|||++||+.+..++.+.+. ++ ..+..+-+..+
T Consensus 11 ~~p~~v~i~~~~~----------~~~C~G~li~~~-~vLTaahC~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h~~ 79 (220)
T PF00089_consen 11 EFPWVVSIRYSNG----------RFFCTGTLISPR-WVLTAAHCVDGASDIKVRLGTYSIRNSDGSEQTIKVSKIIIHPK 79 (220)
T ss_dssp SSTTEEEEEETTT----------EEEEEEEEEETT-EEEEEGGGHTSGGSEEEEESESBTTSTTTTSEEEEEEEEEEETT
T ss_pred CCCeEEEEeeCCC----------CeeEeEEecccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 4477888776431 237999999987 99999999999656666543 22 23444433332
Q ss_pred -----CCCCEEEEEEcCC---CCCccceEecCC-CCCCCCCEEEEEecCCCCCC----ceeEeEEeeeecccC-----Cc
Q 018198 231 -----QVNDLAVLHIDAP---NHELRPIHVSVS-ADLRVGKKIYAIGHPLGWSF----TCTTGVISALDREIP-----GR 292 (359)
Q Consensus 231 -----~~~DlAll~v~~~---~~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~~----~~~~G~vs~~~~~~~-----~~ 292 (359)
..+|+|||+++.+ ...+.++.+... ..+..|+.+.++||+..... .+....+........ ..
T Consensus 80 ~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 159 (220)
T PF00089_consen 80 YDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNGYSSNLQSVTVPVVSRKTCRSSYNDN 159 (220)
T ss_dssp SBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTSBTSBEEEEEEEEEEHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2579999999987 235667777652 34578999999999975332 344444444333211 11
Q ss_pred ccccEEEEcc----cCCCCCccceeecCCCeEEEEEeeecCCCcc-eeEEEEehHHHHHHH
Q 018198 293 LIQGVIQIDA----SVNLGNSGGPLLDSSGSLIGVNTFITSGAFS-GIGFALPIDTVRGIV 348 (359)
Q Consensus 293 ~~~~~i~~~~----~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~-~~~~aip~~~i~~~l 348 (359)
.....++... ..+.|+|||||++.++.|+||++........ ...++.++..+++|+
T Consensus 160 ~~~~~~c~~~~~~~~~~~g~sG~pl~~~~~~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI 220 (220)
T PF00089_consen 160 LTPNMICAGSSGSGDACQGDSGGPLICNNNYLVGIVSFGENCGSPNYPGVYTRVSSYLDWI 220 (220)
T ss_dssp STTTEEEEETTSSSBGGTTTTTSEEEETTEEEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred cccccccccccccccccccccccccccceeeecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence 2345677776 7889999999998766799999998532222 358889998887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A .... |
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=119.24 Aligned_cols=89 Identities=46% Similarity=0.627 Sum_probs=83.9
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCC
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSS 122 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~ 122 (359)
|++..+++|..|+|+++.+.|..||||+.|+.+++++ ++.+|||++++++++.++||.|||+|+++|.+|.++. .+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~v 81 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAIV 81 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcce
Confidence 5788899999999999999999999999999998876 7889999999999999999999999999999999994 6899
Q ss_pred CCCcccccCCC
Q 018198 123 SLEPFFLPCSG 133 (359)
Q Consensus 123 ~~el~li~~~~ 133 (359)
.||++|+|+..
T Consensus 82 ~rEl~LiKv~~ 92 (157)
T TIGR00119 82 ERELCLVKVSA 92 (157)
T ss_pred eeEEEEEEEEC
Confidence 99999999984
|
acetohydroxyacid synthase is a synonym. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-15 Score=148.05 Aligned_cols=109 Identities=26% Similarity=0.320 Sum_probs=91.6
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEE--EeecCCCCccchhhhhhhhccceeeeeEeec
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTIS--VFVGDESGILSRIDGVFTRRNCNIESLGVIG 79 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~--~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~ 79 (359)
+|+.++|+++|+|++++|+|||++||+|+++|+++.+.+ +.+ .++ ......|..++|++||+.+||++++.+|+
T Consensus 191 ~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~-l~~-~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~~r~-- 266 (403)
T PRK07503 191 TPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKA-LAD-RIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALRM-- 266 (403)
T ss_pred ccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHH-HHH-HHHhhhHHhCcCCCCCHHHHHHHHcCcchHHHHH--
Confidence 577899999999999999999999999999999886554 433 222 23456799999999999999999999999
Q ss_pred ccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 80 LNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .++++++++||++++.|.+|+|. ..+++..++
T Consensus 267 ---~~~---------~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~ 302 (403)
T PRK07503 267 ---DRH---------CASAQAVAEWLARHPAVELVHYPGLPSFAQHAL 302 (403)
T ss_pred ---HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHH
Confidence 999 99999999999999999999885 234444443
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-15 Score=148.07 Aligned_cols=110 Identities=23% Similarity=0.338 Sum_probs=93.0
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEE--eecCCCCccchhhhhhhhccceeeeeEee
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISV--FVGDESGILSRIDGVFTRRNCNIESLGVI 78 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~--~~~~~G~~lsp~~a~l~~RG~~tl~lr~~ 78 (359)
++|++++|+++|+|++++|+|||++||+|.++|.++++++.+ + .++. .....|..++|+++|+.+||++|+.+||
T Consensus 191 ~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~-~-~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl~~r~- 267 (400)
T PRK06234 191 CTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFI-N-QVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQIRM- 267 (400)
T ss_pred CchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHH-H-HHHHHHHHHhcCCCCCHHHHHHHHhccCcHHHHH-
Confidence 357788999999999999999999999999999999887543 2 2221 2345799999999999999999999999
Q ss_pred cccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 79 GLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .+++++++++|++++.|.+|+|. ..+++..++
T Consensus 268 ----~~~---------~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~ 303 (400)
T PRK06234 268 ----EKH---------CKNAMKVAKFLESHPAVEKVYYPGLESFEYYEL 303 (400)
T ss_pred ----HHH---------HHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHH
Confidence 888 89999999999999999999996 345555544
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-15 Score=146.73 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=92.7
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEee-cCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFV-GDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~-~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+|+.++|+++|+|++++|+|||++||+|.++|+++++.+.+.+ ...... ...|+.++|++||+.+||++++..|+
T Consensus 185 ~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~-l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~~r~--- 260 (391)
T TIGR01328 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQ-IRMVGIKDMTGSVISPFDAWLILRGLKTLNIRM--- 260 (391)
T ss_pred hhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHH-HHHHHHHhCCCCCCCcHHHHHHHhCcCcHHHHH---
Confidence 5778999999999999999999999999999998876654422 111112 23478999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ .++++++++||++++.|.+|.|. ..+++..+++
T Consensus 261 --~~~---------~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~ 297 (391)
T TIGR01328 261 --KRH---------SENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIA 297 (391)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 888 99999999999999999999996 3566666654
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-14 Score=102.95 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=67.5
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
++|.+..+++|.+|+|+++.+.|.+||||+.+|.+++++ ++.+|||+++. +++.++||.+||+|++||.+|..
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 457899999999999999999999999999999998765 77899999995 89999999999999999999874
|
|
| >KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=132.03 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=159.0
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCC-CEEEecccccCC-CCeEEEEecCCcEEEEEEEEEc
Q 018198 153 LETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQD-GHIVTNYHVICG-ASTVKVSFSDQSTFYAQVVGHD 230 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~-g~vlT~~Hvv~~-~~~~~v~~~~g~~~~~~v~~~d 230 (359)
...+..+..+-+|||.|....... ++......+.||||++++. |++|||+|++.. .-...+.|.+-...+.-.++.|
T Consensus 52 e~w~~~ia~VvksvVsI~~S~v~~-fdtesag~~~atgfvvd~~~gyiLtnrhvv~pgP~va~avf~n~ee~ei~pvyrD 130 (955)
T KOG1421|consen 52 EDWRNTIANVVKSVVSIRFSAVRA-FDTESAGESEATGFVVDKKLGYILTNRHVVAPGPFVASAVFDNHEEIEIYPVYRD 130 (955)
T ss_pred hhhhhhhhhhcccEEEEEehheee-cccccccccceeEEEEecccceEEEeccccCCCCceeEEEecccccCCcccccCC
Confidence 377888999999999999876532 1212345678999999975 899999999964 4466788877777777778899
Q ss_pred CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCc-------ccccEEEE
Q 018198 231 QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGR-------LIQGVIQI 300 (359)
Q Consensus 231 ~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~-------~~~~~i~~ 300 (359)
+-+|+.+++.++... .+..+++. .+-.++|.+++++|+..+...++..|.++++++....+ -...++|.
T Consensus 131 pVhdfGf~r~dps~ir~s~vt~i~la-p~~akvgseirvvgNDagEklsIlagflSrldr~apdyg~~~yndfnTfy~Qa 209 (955)
T KOG1421|consen 131 PVHDFGFFRYDPSTIRFSIVTEICLA-PELAKVGSEIRVVGNDAGEKLSILAGFLSRLDRNAPDYGEDTYNDFNTFYIQA 209 (955)
T ss_pred chhhcceeecChhhcceeeeeccccC-ccccccCCceEEecCCccceEEeehhhhhhccCCCccccccccccccceeeee
Confidence 999999999987543 33444453 34557999999999988888889999999998876522 12245777
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
.+....|.||+|++|.+|..|.++..+... .+-.|++|++.+.+.|.-+..+..|+|
T Consensus 210 asstsggssgspVv~i~gyAVAl~agg~~s--sas~ffLpLdrV~RaL~clq~n~PItR 266 (955)
T KOG1421|consen 210 ASSTSGGSSGSPVVDIPGYAVALNAGGSIS--SASDFFLPLDRVVRALRCLQNNTPITR 266 (955)
T ss_pred hhcCCCCCCCCceecccceEEeeecCCccc--ccccceeeccchhhhhhhhhcCCCccc
Confidence 788889999999999999999998887632 345899999999999988877776665
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=117.08 Aligned_cols=90 Identities=47% Similarity=0.624 Sum_probs=83.7
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCC
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSS 121 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~ 121 (359)
+|.+..+.+|.+|+|+++.++|.+||||+.+|.+++.+ ++.+||||++.++++.++||.+||+|+.+|.+|.++ ..+.
T Consensus 2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~~ 81 (174)
T CHL00100 2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIPC 81 (174)
T ss_pred eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCccc
Confidence 57889999999999999999999999999999997655 777899999999988899999999999999999999 5799
Q ss_pred CCCCcccccCCC
Q 018198 122 SSLEPFFLPCSG 133 (359)
Q Consensus 122 ~~~el~li~~~~ 133 (359)
.+||++|+|+..
T Consensus 82 v~rEl~LiKv~~ 93 (174)
T CHL00100 82 VERELMLIKINV 93 (174)
T ss_pred eeeEEEEEEEec
Confidence 999999999984
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-15 Score=142.51 Aligned_cols=102 Identities=25% Similarity=0.407 Sum_probs=90.6
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|+++|.++++++.+.+ .+...+...|.+++|+++|+..||++|+..|+
T Consensus 176 ~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~-~~~~~~~~~g~~~s~~~a~l~~~~l~tl~~r~--- 251 (366)
T PRK08247 176 YTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCE-RLAYYQNAAGAVLSPFDSWLLIRGMKTLALRM--- 251 (366)
T ss_pred ccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHH-HHHHHHHhcCCCCChHHHHHHHhccCcHHHHH---
Confidence 36889999999999999999999999999999999887555543 34455667789999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .++++.++++|++++.+.+|.+.
T Consensus 252 --~~~---------~~~a~~l~~~L~~~p~v~~v~~P 277 (366)
T PRK08247 252 --RQH---------EENAKAIAAFLNEQPGVTDVLYP 277 (366)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEecC
Confidence 888 99999999999999999999875
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-15 Score=142.91 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=87.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|++++|+++|+|++++|+|||++||+|+++|.++.+.+.+.+ .........|+.++|+++|+.+|+++++.+|+
T Consensus 187 a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~-l~~~~~~~~g~~~~~~~A~~~l~~L~tl~~r~--- 262 (389)
T PRK05968 187 ASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-INAEAYPYLGAKLSPFEAWLLLRGLRTLPLRM--- 262 (389)
T ss_pred cchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHH-HHHHHHHhCCCCCChHHHHHHHcccCcHHHHH---
Confidence 36778899999999999999999999999999988876654322 11111235789999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++++++++|++++.|.+|.|.
T Consensus 263 --~~~---------~~~a~~la~~L~~~p~v~~v~~p 288 (389)
T PRK05968 263 --KAH---------EASALEIARRLKAHPVVERVCHP 288 (389)
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEECC
Confidence 999 99999999999999999999985
|
|
| >cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=113.52 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=111.2
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecC---------CcEEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
...|.+|.|.... ....|+|++|+++ +|||+|||+.+. ..+.+.+.. ...+..+-+..
T Consensus 10 ~~~Pw~v~i~~~~----------~~~~C~GtlIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~ 78 (232)
T cd00190 10 GSFPWQVSLQYTG----------GRHFCGGSLISPR-WVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIV 78 (232)
T ss_pred CCCCCEEEEEccC----------CcEEEEEEEeeCC-EEEECHHhcCCCCCccEEEEeCcccccCCCCceEEEEEEEEEE
Confidence 3457888886542 1247999999987 999999999875 456666532 11233333333
Q ss_pred c-------CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccCC--
Q 018198 230 D-------QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIPG-- 291 (359)
Q Consensus 230 d-------~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~~-- 291 (359)
+ ..+|||||+++.+.. .+.++.|.... .+..++.+.+.||+..... .+....+..+....+.
T Consensus 79 hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 158 (232)
T cd00190 79 HPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRA 158 (232)
T ss_pred CCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHhhhh
Confidence 3 357999999986533 36778886543 6778999999999764322 2233333322221110
Q ss_pred -----cccccEEEE-----cccCCCCCccceeecCC---CeEEEEEeeecCCCc-ceeEEEEehHHHHHHHHH
Q 018198 292 -----RLIQGVIQI-----DASVNLGNSGGPLLDSS---GSLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQ 350 (359)
Q Consensus 292 -----~~~~~~i~~-----~~~~~~G~SGgPl~~~~---G~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~ 350 (359)
......++. +...|+|+|||||+... +.++||.+++..-.. .....+..+...++|+++
T Consensus 159 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~ 231 (232)
T cd00190 159 YSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQK 231 (232)
T ss_pred ccCcccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhc
Confidence 111233443 33478899999999764 789999999763111 223445666777776654
|
Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-14 Score=138.12 Aligned_cols=109 Identities=30% Similarity=0.353 Sum_probs=92.7
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|+++|.++++.+ +.+ .+.......|..++|+++|+++||++++..|+
T Consensus 171 ~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~-~l~~~~~~~g~~~~~~~a~~~l~~~~~l~~r~---- 244 (376)
T PRK06460 171 TPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLN-VIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRM---- 244 (376)
T ss_pred ccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHH-HHH-HHHHHHHhcCCCCCHHHHHHHHhchhhHHHHH----
Confidence 467788999999999999999999999999999887655 333 34456667899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ .+++++++++|++++.|.+|+|. .++++..++
T Consensus 245 -~~~---------~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~ 280 (376)
T PRK06460 245 -DVI---------NRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEI 280 (376)
T ss_pred -HHH---------HHHHHHHHHHHHcCCCccEEECCCCCCCccHHH
Confidence 888 99999999999999999999996 245555444
|
|
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-14 Score=121.14 Aligned_cols=91 Identities=37% Similarity=0.486 Sum_probs=85.3
Q ss_pred ceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-C
Q 018198 42 VQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-S 119 (359)
Q Consensus 42 ~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~ 119 (359)
..+|++..++.|..|++|++.+.|++|||||+||-++..+ +..+||||++.|.+..++|..+||+|+++|.+|.++. +
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~e 154 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTNE 154 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCCC
Confidence 3457999999999999999999999999999999998777 7779999999999999999999999999999999995 7
Q ss_pred CCCCCCcccccCC
Q 018198 120 SSSSLEPFFLPCS 132 (359)
Q Consensus 120 ~~~~~el~li~~~ 132 (359)
+...|||+|+|+.
T Consensus 155 ~~VeRELmlakvs 167 (309)
T KOG2663|consen 155 PIVERELMLAKVS 167 (309)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999986
|
|
| >smart00020 Tryp_SPc Trypsin-like serine protease | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=107.33 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=99.3
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecCC--------cEEEEEEEEEc
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSDQ--------STFYAQVVGHD 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~g--------~~~~~~v~~~d 230 (359)
...|.+|.|.... ....|+|++|+++ +|||++||+.+.. .+.|.+... ....+.-+..+
T Consensus 11 ~~~Pw~~~i~~~~----------~~~~C~GtlIs~~-~VLTaahC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~~~~~ 79 (229)
T smart00020 11 GSFPWQVSLQYRG----------GRHFCGGSLISPR-WVLTAAHCVYGSDPSNIRVRLGSHDLSSGEEGQVIKVSKVIIH 79 (229)
T ss_pred CCCCcEEEEEEcC----------CCcEEEEEEecCC-EEEECHHHcCCCCCcceEEEeCcccCCCCCCceEEeeEEEEEC
Confidence 3467778776432 1347999999987 9999999998753 677777432 22333333322
Q ss_pred -------CCCCEEEEEEcCCC---CCccceEecCC-CCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccCC--
Q 018198 231 -------QVNDLAVLHIDAPN---HELRPIHVSVS-ADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIPG-- 291 (359)
Q Consensus 231 -------~~~DlAll~v~~~~---~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~~-- 291 (359)
..+|||||+++.+. ..+.++.|... ..+..++.+.+.||+.... .......+.........
T Consensus 80 p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 159 (229)
T smart00020 80 PNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRA 159 (229)
T ss_pred CCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhh
Confidence 46799999998752 24667777543 3567789999999986542 12222333322221110
Q ss_pred -----cccccEEEE-----cccCCCCCccceeecCCC--eEEEEEeeec
Q 018198 292 -----RLIQGVIQI-----DASVNLGNSGGPLLDSSG--SLIGVNTFIT 328 (359)
Q Consensus 292 -----~~~~~~i~~-----~~~~~~G~SGgPl~~~~G--~viGi~~~~~ 328 (359)
......++. ....|+|+||||++...+ .++||.+++.
T Consensus 160 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~l~Gi~s~g~ 208 (229)
T smart00020 160 YSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCNDGRWVLVGIVSWGS 208 (229)
T ss_pred hccccccCCCcEeecCCCCCCcccCCCCCCeeEEECCCEEEEEEEEECC
Confidence 011123333 345788999999996543 8999999976
|
Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. |
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-12 Score=89.89 Aligned_cols=62 Identities=52% Similarity=0.764 Sum_probs=55.4
Q ss_pred CCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeee
Q 018198 53 DESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKV 114 (359)
Q Consensus 53 ~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v 114 (359)
|..|+|+++.+.|.+||||+.+|.+++.+ ++.+|||+++.++++.++||.+||+|++||.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 46899999999999999999999998766 778999999999999999999999999999886
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-13 Score=129.32 Aligned_cols=107 Identities=23% Similarity=0.251 Sum_probs=88.2
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEe----ecCCCCccchhhhhhhhccceeeeeEe
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVF----VGDESGILSRIDGVFTRRNCNIESLGV 77 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~----~~~~G~~lsp~~a~l~~RG~~tl~lr~ 77 (359)
+++.++|+++|+||+++|+|||++||+|.++|.++++.+.+.+ +..+ ....|..++|++||+..||++|+.+||
T Consensus 203 ~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~--l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~ 280 (418)
T PLN02242 203 APMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNS--MMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRM 280 (418)
T ss_pred CccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHH--HHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHH
Confidence 3677899999999999999999999999999999877654322 2222 245799999999999999999999999
Q ss_pred ecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCc
Q 018198 78 IGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEP 126 (359)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el 126 (359)
+++ ++++++++++|++++ .+|.|. ..+++..++
T Consensus 281 -----~~~---------~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~ 314 (418)
T PLN02242 281 -----KEH---------CRRAMEYAKRMKELG--LKVIYPGLEDHPQHAL 314 (418)
T ss_pred -----HHH---------HHHHHHHHHHHHhCC--CEEECCCCCCCccHHH
Confidence 888 999999999999995 488875 355666554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-12 Score=124.72 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccce-------eeEEE-------EeecCCCCccchhhhhhhh
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQ-------RHTIS-------VFVGDESGILSRIDGVFTR 67 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~-------~~~l~-------~~~~~~G~~lsp~~a~l~~ 67 (359)
+|++++|+++|||++++|++||++|| .+|.++++++.+. .+.++ .+...+|..++|+++|+.+
T Consensus 268 ~p~~~~~~~~GaDiv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~ 344 (454)
T TIGR00474 268 EPTVQEVIAAGVDLVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKI 344 (454)
T ss_pred CcccccHhHcCCCEEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhc
Confidence 46778999999999999999999999 5888888765441 11233 4567889999999999999
Q ss_pred ccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhh
Q 018198 68 RNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKL 108 (359)
Q Consensus 68 RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~ 108 (359)
||++||++|+ +.+ +++++++++||++.
T Consensus 345 ~~l~~l~~~~-----~~~---------~~~A~~la~~L~~~ 371 (454)
T TIGR00474 345 PTLRMLTQSP-----EEL---------RARAERLAKRLKAA 371 (454)
T ss_pred hHHHHhccCH-----HHH---------HHHHHHHHHHHHhh
Confidence 9999999999 999 99999999999985
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=92.41 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=97.3
Q ss_pred eEEEEEEeCCCEEEecccccCCCC----eEEEEe----cCCc-EE--EEEEEE-EcC---CCCEEEEEEcCCCC------
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS----TVKVSF----SDQS-TF--YAQVVG-HDQ---VNDLAVLHIDAPNH------ 245 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~----~~g~-~~--~~~v~~-~d~---~~DlAll~v~~~~~------ 245 (359)
.+++|+|+++ .+||++||+.... ++.+.. .++. .+ ...... ... ..|.+...+.+...
T Consensus 65 ~~~~~lI~pn-tvLTa~Hc~~s~~~G~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~v~~~~~~~g~~~ 143 (251)
T COG3591 65 CTAATLIGPN-TVLTAGHCIYSPDYGEDDIAAAPPGVNSDGGPFYGITKIEIRVYPGELYKEDGASYDVGEAALESGINI 143 (251)
T ss_pred eeeEEEEcCc-eEEEeeeEEecCCCChhhhhhcCCcccCCCCCCCceeeEEEEecCCceeccCCceeeccHHHhccCCCc
Confidence 5677999987 9999999995433 122211 1111 11 111111 112 45666666643221
Q ss_pred --CccceEecCCCCCCCCCEEEEEecCCCCCCc----eeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCe
Q 018198 246 --ELRPIHVSVSADLRVGKKIYAIGHPLGWSFT----CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGS 319 (359)
Q Consensus 246 --~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~----~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~ 319 (359)
......+......+.++.+.++|||.+.... ...+.|..... ..+..++.+++|+||+|+++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk~~~~~~~e~t~~v~~~~~--------~~l~y~~dT~pG~SGSpv~~~~~~ 215 (251)
T COG3591 144 GDVVNYLKRNTASEAKANDRITVIGYPGDKPNIGTMWESTGKVNSIKG--------NKLFYDADTLPGSSGSPVLISKDE 215 (251)
T ss_pred cccccccccccccccccCceeEEEeccCCCCcceeEeeecceeEEEec--------ceEEEEecccCCCCCCceEecCce
Confidence 1222233344567889999999999875522 23455544422 357889999999999999999889
Q ss_pred EEEEEeeecCCC-cceeEE-EEehHHHHHHHHHHHh
Q 018198 320 LIGVNTFITSGA-FSGIGF-ALPIDTVRGIVDQLVK 353 (359)
Q Consensus 320 viGi~~~~~~~~-~~~~~~-aip~~~i~~~l~~l~~ 353 (359)
+||++..+.... ....++ ..-...++++++++++
T Consensus 216 vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~ 251 (251)
T COG3591 216 VIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK 251 (251)
T ss_pred EEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence 999999987321 123343 3445688888888764
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-10 Score=110.64 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=71.6
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeecccccee---eEEEEe-----------ecCCCCccchhhhhhhh
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR---HTISVF-----------VGDESGILSRIDGVFTR 67 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~---~~l~~~-----------~~~~G~~lsp~~a~l~~ 67 (359)
.|.+++|+++|||++++|++||++|| .+|.++++++.+.+ +.+... ...++..++|+++|..+
T Consensus 273 ~p~~~~~l~~GaDiv~fSg~K~LgGp---~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i 349 (464)
T PRK04311 273 EPTVQELLAAGVDLVTFSGDKLLGGP---QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEI 349 (464)
T ss_pred CCchhhHHhcCCcEEEecCcccccCC---ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhC
Confidence 46778999999999999999999999 58888887655421 111111 22346667777778788
Q ss_pred ccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhh
Q 018198 68 RNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLV 109 (359)
Q Consensus 68 RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~ 109 (359)
|++++|.+|+ +.+ +++++++++||+++.
T Consensus 350 ~~l~~l~~~~-----~~~---------~~~A~~la~~L~~~~ 377 (464)
T PRK04311 350 PTLRLLTRSP-----EEL---------RARAERLAAALKAAL 377 (464)
T ss_pred cHHHHhcCCH-----HHH---------HHHHHHHHHHHHhcc
Confidence 8999999999 999 999999999999976
|
|
| >KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-08 Score=93.57 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=133.9
Q ss_pred hhhcCCCeeEEEEeeeeecCCccc----ccccceEEEEEEeCCCEEEecccccC---CCCeEEEEe-cCCcEEEEEEEEE
Q 018198 158 IFEENISSVVWIGNLGIREDQSET----EFLRGSGAGFLWDQDGHIVTNYHVIC---GASTVKVSF-SDQSTFYAQVVGH 229 (359)
Q Consensus 158 ~~~~~~~svV~I~~~~~~~~~~~~----~~~~~~GsGfii~~~g~vlT~~Hvv~---~~~~~~v~~-~~g~~~~~~v~~~ 229 (359)
..+....|++.+........+... ......|+||.+... .++|++|++. +.....+.- ..-+.+.+++...
T Consensus 55 ~~~~~~~s~~~v~~~~~~~~~~~pw~~~~q~~~~~s~f~i~~~-~lltn~~~v~~~~~~~~v~v~~~gs~~k~~~~v~~~ 133 (473)
T KOG1320|consen 55 VVDLALQSVVKVFSVSTEPSSVLPWQRTRQFSSGGSGFAIYGK-KLLTNAHVVAPNNDHKFVTVKKHGSPRKYKAFVAAV 133 (473)
T ss_pred CccccccceeEEEeecccccccCcceeeehhcccccchhhccc-ceeecCccccccccccccccccCCCchhhhhhHHHh
Confidence 344556677777776554332211 234567999999865 8999999998 444555542 2234577888888
Q ss_pred cCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCC
Q 018198 230 DQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLG 307 (359)
Q Consensus 230 d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G 307 (359)
-.+.|+|++.++..+.+....++...+-+...+.++++| +....++.|.|+......+ +......+++++...+|
T Consensus 134 ~~~cd~Avv~Ie~~~f~~~~~~~e~~~ip~l~~S~~Vv~---gd~i~VTnghV~~~~~~~y~~~~~~l~~vqi~aa~~~~ 210 (473)
T KOG1320|consen 134 FEECDLAVVYIESEEFWKGMNPFELGDIPSLNGSGFVVG---GDGIIVTNGHVVRVEPRIYAHSSTVLLRVQIDAAIGPG 210 (473)
T ss_pred hhcccceEEEEeeccccCCCcccccCCCcccCccEEEEc---CCcEEEEeeEEEEEEeccccCCCcceeeEEEEEeecCC
Confidence 889999999998744322222333334455678899998 6677899999998876543 22334568999999999
Q ss_pred CccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcC
Q 018198 308 NSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 308 ~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g 355 (359)
+||+|.+.-.+++.|++....+.. ..+.+.+|.-.+.++..-....+
T Consensus 211 ~s~ep~i~g~d~~~gvA~l~ik~~-~~i~~~i~~~~~~~~~~G~~~~a 257 (473)
T KOG1320|consen 211 NSGEPVIVGVDKVAGVAFLKIKTP-ENILYVIPLGVSSHFRTGVEVSA 257 (473)
T ss_pred ccCCCeEEccccccceEEEEEecC-Ccccceeecceeeeecccceeec
Confidence 999999976689999999987332 25678888877777665544443
|
|
| >PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-06 Score=75.01 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=86.1
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC-CCeEEEEecCCcEEEEE-----EEEEcCCC
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG-ASTVKVSFSDQSTFYAQ-----VVGHDQVN 233 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~-~~~~~v~~~~g~~~~~~-----v~~~d~~~ 233 (359)
..+...|++|...+.. ....--|+..+ + ||+|++|.++. ...+.|+..-|.- ... -+..-+..
T Consensus 14 n~Ia~~ic~l~n~s~~--------~~~~l~gigyG-~-~iItn~HLf~~nng~L~i~s~hG~f-~v~nt~~lkv~~i~~~ 82 (235)
T PF00863_consen 14 NPIASNICRLTNESDG--------GTRSLYGIGYG-S-YIITNAHLFKRNNGELTIKSQHGEF-TVPNTTQLKVHPIEGR 82 (235)
T ss_dssp HHHHTTEEEEEEEETT--------EEEEEEEEEET-T-EEEEEGGGGSSTTCEEEEEETTEEE-EECEGGGSEEEE-TCS
T ss_pred chhhheEEEEEEEeCC--------CeEEEEEEeEC-C-EEEEChhhhccCCCeEEEEeCceEE-EcCCccccceEEeCCc
Confidence 3455677888754321 11234466665 3 99999999954 4567777765522 211 23345789
Q ss_pred CEEEEEEcCCCCCccceEe-cCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccce
Q 018198 234 DLAVLHIDAPNHELRPIHV-SVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGP 312 (359)
Q Consensus 234 DlAll~v~~~~~~~~~~~l-~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgP 312 (359)
||.++|+... +||.+- ..-..+..++.|+++|.-+...... -.||....... .....+..+-..+..|+-|.|
T Consensus 83 DiviirmPkD---fpPf~~kl~FR~P~~~e~v~mVg~~fq~k~~~--s~vSesS~i~p-~~~~~fWkHwIsTk~G~CG~P 156 (235)
T PF00863_consen 83 DIVIIRMPKD---FPPFPQKLKFRAPKEGERVCMVGSNFQEKSIS--STVSESSWIYP-EENSHFWKHWISTKDGDCGLP 156 (235)
T ss_dssp SEEEEE--TT---S----S---B----TT-EEEEEEEECSSCCCE--EEEEEEEEEEE-ETTTTEEEE-C---TT-TT-E
T ss_pred cEEEEeCCcc---cCCcchhhhccCCCCCCEEEEEEEEEEcCCee--EEECCceEEee-cCCCCeeEEEecCCCCccCCc
Confidence 9999999873 455442 1235678999999999754322211 12232221111 112356677777888999999
Q ss_pred eecC-CCeEEEEEeeecCCCcceeEEEEehH
Q 018198 313 LLDS-SGSLIGVNTFITSGAFSGIGFALPID 342 (359)
Q Consensus 313 l~~~-~G~viGi~~~~~~~~~~~~~~aip~~ 342 (359)
|++. ||++|||++..... ...+|+.|+.
T Consensus 157 lVs~~Dg~IVGiHsl~~~~--~~~N~F~~f~ 185 (235)
T PF00863_consen 157 LVSTKDGKIVGIHSLTSNT--SSRNYFTPFP 185 (235)
T ss_dssp EEETTT--EEEEEEEEETT--TSSEEEEE--
T ss_pred EEEcCCCcEEEEEcCccCC--CCeEEEEcCC
Confidence 9987 99999999988644 3456777655
|
; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A. |
| >KOG3627 consensus Trypsin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.1e-06 Score=75.16 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=95.4
Q ss_pred eEEEEEEeCCCEEEecccccCCCC--eEEEEecC---------C---cEEEE-EEEEEc-------CC-CCEEEEEEcCC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD---------Q---STFYA-QVVGHD-------QV-NDLAVLHIDAP 243 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~---------g---~~~~~-~v~~~d-------~~-~DlAll~v~~~ 243 (359)
.+.|.+|+++ ||||++||+.+.. ...|.+.. + ..... +++ .+ .. +|||||+++.+
T Consensus 39 ~Cggsli~~~-~vltaaHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~v~~~i-~H~~y~~~~~~~nDiall~l~~~ 116 (256)
T KOG3627|consen 39 LCGGSLISPR-WVLTAAHCVKGASASLYTVRLGEHDINLSVSEGEEQLVGDVEKII-VHPNYNPRTLENNDIALLRLSEP 116 (256)
T ss_pred eeeeEEeeCC-EEEEChhhCCCCCCcceEEEECccccccccccCchhhhceeeEEE-ECCCCCCCCCCCCCEEEEEECCC
Confidence 5777788766 9999999998865 66666531 1 11111 222 22 13 79999999874
Q ss_pred C---CCccceEecCCCC---CCCCCEEEEEecCCCC------CCceeEeEEeeeecccC----C---cccccEEEEcc--
Q 018198 244 N---HELRPIHVSVSAD---LRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP----G---RLIQGVIQIDA-- 302 (359)
Q Consensus 244 ~---~~~~~~~l~~~~~---~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~----~---~~~~~~i~~~~-- 302 (359)
. ..+.++.|..... ...+..+++.||+... ...+....+..+..... . ......++...
T Consensus 117 v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~ 196 (256)
T KOG3627|consen 117 VTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDVPIISNSECRRAYGGLGTITDTMLCAGGPE 196 (256)
T ss_pred cccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEEeEcChhHhcccccCccccCCCEEeeCccC
Confidence 3 2466667743332 3445888899997532 12223233333322212 1 01123466542
Q ss_pred ---cCCCCCccceeecCC---CeEEEEEeeecCCCcc--eeEEEEehHHHHHHHHHHH
Q 018198 303 ---SVNLGNSGGPLLDSS---GSLIGVNTFITSGAFS--GIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 303 ---~~~~G~SGgPl~~~~---G~viGi~~~~~~~~~~--~~~~aip~~~i~~~l~~l~ 352 (359)
..|.|+|||||+-.+ ..++||.+++...... .-+....+.....++++.+
T Consensus 197 ~~~~~C~GDSGGPLv~~~~~~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~~~ 254 (256)
T KOG3627|consen 197 GGKDACQGDSGGPLVCEDNGRWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKENI 254 (256)
T ss_pred CCCccccCCCCCeEEEeeCCcEEEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHHHh
Confidence 368899999999654 6999999998632111 1123555666666666543
|
|
| >KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-05 Score=77.48 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=118.9
Q ss_pred ceEEEEEEeCC-CEEEecccccC-CCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCE
Q 018198 186 GSGAGFLWDQD-GHIVTNYHVIC-GASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKK 263 (359)
Q Consensus 186 ~~GsGfii~~~-g~vlT~~Hvv~-~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~ 263 (359)
-.|||.|++.+ |++++.+.++. +..+..+.+.|...++|.+.+.++..++|.+|.++.. ...++|. ...+..|++
T Consensus 550 ~kgt~~i~d~~~g~~vvsr~~vp~d~~d~~vt~~dS~~i~a~~~fL~~t~n~a~~kydp~~--~~~~kl~-~~~v~~gD~ 626 (955)
T KOG1421|consen 550 YKGTALIMDTSKGLGVVSRSVVPSDAKDQRVTEADSDGIPANVSFLHPTENVASFKYDPAL--EVQLKLT-DTTVLRGDE 626 (955)
T ss_pred hcCceEEEEccCCceeEecccCCchhhceEEeecccccccceeeEecCccceeEeccChhH--hhhhccc-eeeEecCCc
Confidence 46999999854 89999999995 6778999999999999999999999999999999854 2445563 456788999
Q ss_pred EEEEecCCCCCCceeEeEEeee-----eccc-C--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC----CC
Q 018198 264 IYAIGHPLGWSFTCTTGVISAL-----DREI-P--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS----GA 331 (359)
Q Consensus 264 v~~iG~p~~~~~~~~~G~vs~~-----~~~~-~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~----~~ 331 (359)
+...|+-...........|..+ .+.. . .....+.|.+++...-++--|-+.|.+|+|+|++-.... +.
T Consensus 627 ~~f~g~~~~~r~ltaktsv~dvs~~~~ps~~~pr~r~~n~e~Is~~~nlsT~c~sg~ltdddg~vvalwl~~~ge~~~~k 706 (955)
T KOG1421|consen 627 CTFEGFTEDLRALTAKTSVTDVSVVIIPSSVMPRFRATNLEVISFMDNLSTSCLSGRLTDDDGEVVALWLSVVGEDVGGK 706 (955)
T ss_pred eeEecccccchhhcccceeeeeEEEEecCCCCcceeecceEEEEEeccccccccceEEECCCCeEEEEEeeeeccccCCc
Confidence 9999987553322222222211 1111 1 112234555655544455556788899999999877652 22
Q ss_pred cceeEEEEehHHHHHHHHHHHhcCcc
Q 018198 332 FSGIGFALPIDTVRGIVDQLVKFSRY 357 (359)
Q Consensus 332 ~~~~~~aip~~~i~~~l~~l~~~g~v 357 (359)
.-..-|++.+..+++.|+.|+.-+..
T Consensus 707 d~~y~~gl~~~~~l~vl~rlk~g~~~ 732 (955)
T KOG1421|consen 707 DYTYKYGLSMSYILPVLERLKLGPSA 732 (955)
T ss_pred eeEEEeccchHHHHHHHHHHhcCCCC
Confidence 23456789999999999998765543
|
|
| >PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.4e-05 Score=66.90 Aligned_cols=115 Identities=24% Similarity=0.330 Sum_probs=62.9
Q ss_pred eEEEEEEeCCC--EEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEE
Q 018198 187 SGAGFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKI 264 (359)
Q Consensus 187 ~GsGfii~~~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v 264 (359)
.|||-+...+| .|+|+.||+. .....+...+ ... ...++..-|+|.-.++.-...+|.+++... ..|.--
T Consensus 113 ~Gsggvft~~~~~vvvTAtHVlg-~~~a~v~~~g-~~~---~~tF~~~GDfA~~~~~~~~G~~P~~k~a~~---~~GrAy 184 (297)
T PF05579_consen 113 VGSGGVFTIGGNTVVVTATHVLG-GNTARVSGVG-TRR---MLTFKKNGDFAEADITNWPGAAPKYKFAQN---YTGRAY 184 (297)
T ss_dssp EEEEEEEECTTEEEEEEEHHHCB-TTEEEEEETT-EEE---EEEEEEETTEEEEEETTS-S---B--B-TT----SEEEE
T ss_pred ccccceEEECCeEEEEEEEEEcC-CCeEEEEecc-eEE---EEEEeccCcEEEEECCCCCCCCCceeecCC---cccceE
Confidence 55655555444 6999999998 4455555432 222 234456789999999554445777777521 233333
Q ss_pred EEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 265 YAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 265 ~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
+.. ...+..|.|... ..+ +-+.+||||+|++..+|.+||||+...
T Consensus 185 W~t------~tGvE~G~ig~~----------~~~---~fT~~GDSGSPVVt~dg~liGVHTGSn 229 (297)
T PF05579_consen 185 WLT------STGVEPGFIGGG----------GAV---CFTGPGDSGSPVVTEDGDLIGVHTGSN 229 (297)
T ss_dssp EEE------TTEEEEEEEETT----------EEE---ESS-GGCTT-EEEETTC-EEEEEEEEE
T ss_pred EEc------ccCcccceecCc----------eEE---EEcCCCCCCCccCcCCCCEEEEEecCC
Confidence 222 122344444321 112 234579999999999999999999875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A. |
| >PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=60.81 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCCEEEEEEcCC-CCCccceEecCCC-CCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCC
Q 018198 231 QVNDLAVLHIDAP-NHELRPIHVSVSA-DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGN 308 (359)
Q Consensus 231 ~~~DlAll~v~~~-~~~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~ 308 (359)
..++++|++++.. .....++.|+++. ....++.+.+.|+.. ...+....+....... ....+..+...+.|+
T Consensus 159 ~~~~~mIlEl~~~~~~~~~~~Cl~~~~~~~~~~~~~~~yg~~~--~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~d 232 (282)
T PF03761_consen 159 RPYSPMILELEEDFSKNVSPPCLADSSTNWEKGDEVDVYGFNS--TGKLKHRKLKITNCTK----CAYSICTKQYSCKGD 232 (282)
T ss_pred cccceEEEEEcccccccCCCEEeCCCccccccCceEEEeecCC--CCeEEEEEEEEEEeec----cceeEecccccCCCC
Confidence 4669999999886 2357788887543 467889999999822 2223333222222211 122355556678899
Q ss_pred ccceeecC-CC--eEEEEEeeecCCCcceeEEEEehHHHHHH
Q 018198 309 SGGPLLDS-SG--SLIGVNTFITSGAFSGIGFALPIDTVRGI 347 (359)
Q Consensus 309 SGgPl~~~-~G--~viGi~~~~~~~~~~~~~~aip~~~i~~~ 347 (359)
+|||++.. +| .||||.+...........+++.+..+++-
T Consensus 233 ~Gg~lv~~~~gr~tlIGv~~~~~~~~~~~~~~f~~v~~~~~~ 274 (282)
T PF03761_consen 233 RGGPLVKNINGRWTLIGVGASGNYECNKNNSYFFNVSWYQDE 274 (282)
T ss_pred ccCeEEEEECCCEEEEEEEccCCCcccccccEEEEHHHhhhh
Confidence 99999843 44 69999877653332235677777766543
|
|
| >COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=64.14 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=33.0
Q ss_pred cCCCCCccceeecC--CC-eEEEEEeeecCCCcce--eEEEEehHHHHHHHHHHH
Q 018198 303 SVNLGNSGGPLLDS--SG-SLIGVNTFITSGAFSG--IGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 303 ~~~~G~SGgPl~~~--~G-~viGi~~~~~~~~~~~--~~~aip~~~i~~~l~~l~ 352 (359)
..|.|+||||+|-. +| .-+||++|+..++... -+..--++....|++...
T Consensus 224 daCqGDSGGPi~~~g~~G~vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~ 278 (413)
T COG5640 224 DACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMT 278 (413)
T ss_pred ccccCCCCCceEEeCCCccEEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHh
Confidence 56889999999953 35 5799999997432111 123333677777777643
|
|
| >PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=53.99 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=85.6
Q ss_pred ccceEEEEEEeCC-CEEEecccccCCCCe-EEEEecCCcEEEEEEEEEcCC----------------C---------CEE
Q 018198 184 LRGSGAGFLWDQD-GHIVTNYHVICGAST-VKVSFSDQSTFYAQVVGHDQV----------------N---------DLA 236 (359)
Q Consensus 184 ~~~~GsGfii~~~-g~vlT~~Hvv~~~~~-~~v~~~~g~~~~~~v~~~d~~----------------~---------DlA 236 (359)
..+.||=.+++++ +..--=.|.+.+.+. ..+.+.+|+.+++++....+. . +..
T Consensus 18 ~aGiGTlTf~dp~~~~fgALGH~I~D~dt~~~~~i~~G~I~~a~I~~I~kg~~G~PGe~~G~~~~~~~~~G~I~~Nt~~G 97 (218)
T PF05580_consen 18 TAGIGTLTFYDPETGTFGALGHGISDVDTGQLIPIKNGEIYEASITSIKKGKKGQPGEKIGVFDNESNILGTIEKNTQFG 97 (218)
T ss_pred CcCeEEEEEEECCCCcEEecCCeEEcCCCCceeEecCCEEEEEEEEEEecCCCcCCceEEEEECCCCceEEEEEeccccc
Confidence 4578999999874 455555888876553 456667788777766554321 1 122
Q ss_pred EE-EEcCC----CCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCccc--------ccEEEEccc
Q 018198 237 VL-HIDAP----NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI--------QGVIQIDAS 303 (359)
Q Consensus 237 ll-~v~~~----~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~--------~~~i~~~~~ 303 (359)
|. +++.. ....++++++...++++|..-...-. .+....--.-.|..+.++.....- ..++.....
T Consensus 98 I~G~~~~~~~~~~~~~~~~pva~~~evk~G~A~i~Tv~-~G~~ie~f~ieI~~v~~~~~~~~k~~vi~vtd~~Ll~~TGG 176 (218)
T PF05580_consen 98 IYGTLDQDDISNPSYNEPIPVAPKQEVKPGPAYILTVI-DGTKIEEFDIEIEKVLPQSSPSGKGMVIKVTDPRLLEKTGG 176 (218)
T ss_pred eeEEeccccccccccCceeEEEEHHHceEccEEEEEEE-cCCeEEEeEEEEEEEccCCCCCCCcEEEEECCcchhhhhCC
Confidence 22 11111 01234555555566666753321111 111111111122222222211100 112223345
Q ss_pred CCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHH
Q 018198 304 VNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVR 345 (359)
Q Consensus 304 ~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~ 345 (359)
+..||||+|++ .+|++||-++.... .....+|.+|+..+.
T Consensus 177 IvqGMSGSPI~-qdGKLiGAVthvf~-~dp~~Gygi~ie~ML 216 (218)
T PF05580_consen 177 IVQGMSGSPII-QDGKLIGAVTHVFV-NDPTKGYGIFIEWML 216 (218)
T ss_pred EEecccCCCEE-ECCEEEEEEEEEEe-cCCCceeeecHHHHh
Confidence 66899999999 79999999888873 335678999977654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S55 (SpoIVB peptidase family, clan PA(S)). The protein SpoIVB plays a key role in signalling in the final sigma-K checkpoint of Bacillus subtilis [, ]. |
| >PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=52.67 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=76.0
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEE--EEEEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCC
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA--QVVGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADL 258 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~--~v~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~ 258 (359)
..++++.|.++ ++|-..| -.....+.+ +|..++. .+...+. ..||++++++...+ ++-+. +.+. ..
T Consensus 25 ~t~l~~gi~~~-~~lvp~H-~~~~~~i~i---~g~~~~~~d~~~lv~~~~~~~Dl~~v~l~~~~k-frDIrk~~~~~-~~ 97 (172)
T PF00548_consen 25 FTMLALGIYDR-YFLVPTH-EEPEDTIYI---DGVEYKVDDSVVLVDRDGVDTDLTLVKLPRNPK-FRDIRKFFPES-IP 97 (172)
T ss_dssp EEEEEEEEEBT-EEEEEGG-GGGCSEEEE---TTEEEEEEEEEEEEETTSSEEEEEEEEEESSS--B--GGGGSBSS-GG
T ss_pred EEEecceEeee-EEEEECc-CCCcEEEEE---CCEEEEeeeeEEEecCCCcceeEEEEEccCCcc-cCchhhhhccc-cc
Confidence 46888899866 9999999 222233333 3444433 2222343 45999999977442 22221 1111 11
Q ss_pred CCCCEEEEEecCCCCCC-ceeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecC---CCeEEEEEeee
Q 018198 259 RVGKKIYAIGHPLGWSF-TCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDS---SGSLIGVNTFI 327 (359)
Q Consensus 259 ~~G~~v~~iG~p~~~~~-~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~---~G~viGi~~~~ 327 (359)
...+...++=. ..... .+..+.++..... ..+......+..++++.+|+-||||+.. .++++||+.++
T Consensus 98 ~~~~~~l~v~~-~~~~~~~~~v~~v~~~~~i~~~g~~~~~~~~Y~~~t~~G~CG~~l~~~~~~~~~i~GiHvaG 170 (172)
T PF00548_consen 98 EYPECVLLVNS-TKFPRMIVEVGFVTNFGFINLSGTTTPRSLKYKAPTKPGMCGSPLVSRIGGQGKIIGIHVAG 170 (172)
T ss_dssp TEEEEEEEEES-SSSTCEEEEEEEEEEEEEEEETTEEEEEEEEEESEEETTGTTEEEEESCGGTTEEEEEEEEE
T ss_pred cCCCcEEEEEC-CCCccEEEEEEEEeecCccccCCCEeeEEEEEccCCCCCccCCeEEEeeccCccEEEEEecc
Confidence 23334444433 22232 2333444433321 1234455678889999999999999953 57999999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A .... |
| >PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0054 Score=63.39 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEEEeCCCEEEecccccC
Q 018198 187 SGAGFLWDQDGHIVTNYHVIC 207 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~ 207 (359)
-|||.||+++|.|+||.||..
T Consensus 48 GCSgsfVS~~GLvlTNHHC~~ 68 (698)
T PF10459_consen 48 GCSGSFVSPDGLVLTNHHCGY 68 (698)
T ss_pred ceeEEEEcCCceEEecchhhh
Confidence 599999999999999999973
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains. |
| >PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0034 Score=64.84 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=44.6
Q ss_pred EEEEcccCCCCCccceeecCCCeEEEEEeeec----C-----CCcceeEEEEehHHHHHHHHHHHh
Q 018198 297 VIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT----S-----GAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 297 ~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~----~-----~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.+.++..+..|+||+|++|.+|+|||+++-+- . +.....+..|-+..|..+++++-.
T Consensus 623 ~FlstnDitGGNSGSPvlN~~GeLVGl~FDgn~Esl~~D~~fdp~~~R~I~VDiRyvL~~ldkv~g 688 (698)
T PF10459_consen 623 NFLSTNDITGGNSGSPVLNAKGELVGLAFDGNWESLSGDIAFDPELNRTIHVDIRYVLWALDKVYG 688 (698)
T ss_pred EEEeccCcCCCCCCCccCCCCceEEEEeecCchhhcccccccccccceeEEEEHHHHHHHHHHHhC
Confidence 46677888999999999999999999988664 1 112346778889999999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains. |
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=40.85 Aligned_cols=65 Identities=20% Similarity=0.412 Sum_probs=55.2
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhc
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVN 110 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~ 110 (359)
.+...+.|..|.+..+...|..+|+|+.++.......+...+.++...+.....++.+.|+++++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 46678899999999999999999999999999554443556777777889999999999999864
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.028 Score=56.63 Aligned_cols=116 Identities=17% Similarity=0.340 Sum_probs=72.4
Q ss_pred CCCEEEEEEcCCCC-------------CccceEecC------CCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--
Q 018198 232 VNDLAVLHIDAPNH-------------ELRPIHVSV------SADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-- 290 (359)
Q Consensus 232 ~~DlAll~v~~~~~-------------~~~~~~l~~------~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-- 290 (359)
-.|+||++++..-. .-|.+.+.+ ...+.+|.+|+=+|.-.+ .+.|++.++.-...
T Consensus 542 LsD~AIIkV~~~~~~~N~LGddi~f~~~dP~l~f~NlyV~~~~~~~~~G~~VfK~GrTTg----yT~G~lNg~klvyw~d 617 (695)
T PF08192_consen 542 LSDWAIIKVNKERKCQNYLGDDIQFNEPDPTLMFQNLYVREVVSNLVPGMEVFKVGRTTG----YTTGILNGIKLVYWAD 617 (695)
T ss_pred ccceEEEEeCCCceecCCCCccccccCCCccccccccchhhhhhccCCCCeEEEecccCC----ccceEecceEEEEecC
Confidence 35999999975321 112222221 124567999999987555 45566655542222
Q ss_pred Ccc-cccEEEEc----ccCCCCCccceeecCCC------eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHH
Q 018198 291 GRL-IQGVIQID----ASVNLGNSGGPLLDSSG------SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 ~~~-~~~~i~~~----~~~~~G~SGgPl~~~~G------~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
+.. ..+++... .-...||||+=|++.-+ .|+||.++.. +...+++++.|+..|.+-|++..
T Consensus 618 G~i~s~efvV~s~~~~~Fa~~GDSGS~VLtk~~d~~~gLgvvGMlhsyd-ge~kqfglftPi~~il~rl~~vT 689 (695)
T PF08192_consen 618 GKIQSSEFVVSSDNNPAFASGGDSGSWVLTKLEDNNKGLGVVGMLHSYD-GEQKQFGLFTPINEILDRLEEVT 689 (695)
T ss_pred CCeEEEEEEEecCCCccccCCCCcccEEEecccccccCceeeEEeeecC-CccceeeccCcHHHHHHHHHHhh
Confidence 111 12233333 23457999999998633 4999998864 44467899999999998888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1 [] and belongs to MEROPS petidase family S64 (clan PA). The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS peptidase family S1) and to have a typical trypsin-like catalytic triad []. |
| >PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0088 Score=48.47 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=22.7
Q ss_pred EEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 298 IQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 298 i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
...+....+|.||+|+||.+|+++|+.....
T Consensus 88 ~~~~~d~~~GsSGSpi~n~~g~ivGlYg~g~ 118 (132)
T PF00949_consen 88 GAIDLDFPKGSSGSPIFNQNGEIVGLYGNGV 118 (132)
T ss_dssp EEE---S-TTGTT-EEEETTSCEEEEEEEEE
T ss_pred EeeecccCCCCCCCceEcCCCcEEEEEccce
Confidence 3445557789999999999999999988876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies serine peptidases belong to MEROPS peptidase family S7 (flavivirin family, clan PA(S)). The protein fold of the peptidase domain for members of this family resembles that of chymotrypsin, the type example for clan PA. Flaviviruses produce a polyprotein from the ssRNA genome. The N terminus of the NS3 protein (approx. 180 aa) is required for the processing of the polyprotein. NS3 also has conserved homology with NTP-binding proteins and DEAD family of RNA helicase [, , ].; GO: 0003723 RNA binding, 0003724 RNA helicase activity, 0005524 ATP binding; PDB: 2IJO_B 3E90_D 2GGV_B 2FP7_B 2WV9_A 3U1I_B 3U1J_B 2WZQ_A 2WHX_A 3L6P_A .... |
| >TIGR02860 spore_IV_B stage IV sporulation protein B | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.071 Score=51.45 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=32.7
Q ss_pred ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHH
Q 018198 302 ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRG 346 (359)
Q Consensus 302 ~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~ 346 (359)
..+..||||+|++ .+|++||=++-..-.. +..+|+|-+.++.+
T Consensus 355 gGivqGMSGSPi~-q~gkliGAvtHVfvnd-pt~GYGi~ie~Ml~ 397 (402)
T TIGR02860 355 GGIVQGMSGSPII-QNGKVIGAVTHVFVND-PTSGYGVYIEWMLK 397 (402)
T ss_pred CCEEecccCCCEE-ECCEEEEEEEEEEecC-CCcceeehHHHHHH
Confidence 3566799999999 7999999877666322 55689997776654
|
SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else. |
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.035 Score=39.18 Aligned_cols=70 Identities=53% Similarity=0.726 Sum_probs=55.8
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecc-cCCceEEEEEEECChhHHHHHHHHHhhhhceeeee
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL-NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~-~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~ 115 (359)
.+.....+..|.+..+..+|...++++.++..... ..+..++.+.+........++.++|+++++|.+|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~ 72 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKVS 72 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEeC
Confidence 45667788899999999999999999999998433 23445677777643388999999999999998773
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of |
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.076 Score=38.97 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=57.1
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEE-CChhHHHHHHHHHhhhhceeeee
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVF-GTDRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v~ 115 (359)
.+.....+..|.|+.+...+..-|.|+.++.+.... .+..++.+.++ .+-+...+|++.|+++++|.+|.
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 677788899999999999999999999999995543 45566666666 67889999999999999999886
|
|
| >PF02122 Peptidase_S39: Peptidase S39; InterPro: IPR000382 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.062 Score=47.02 Aligned_cols=135 Identities=18% Similarity=0.245 Sum_probs=48.4
Q ss_pred EEEecccccCCCCeEEEEecCCcEEEE---EEEEEcCCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCC
Q 018198 198 HIVTNYHVICGASTVKVSFSDQSTFYA---QVVGHDQVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPL 271 (359)
Q Consensus 198 ~vlT~~Hvv~~~~~~~v~~~~g~~~~~---~v~~~d~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~ 271 (359)
.++|+.||..+..... .+.+|+.++- +.+..+...|++|++..+.-. ..+.+.+.....+..| ...
T Consensus 43 ~L~ta~Hv~~~~~~~~-~~k~g~kipl~~f~~~~~~~~~D~~il~~P~n~~s~Lg~k~~~~~~~~~~~~g----~~~--- 114 (203)
T PF02122_consen 43 ALLTARHVWSRPSKVT-SLKTGEKIPLAEFTDLLESRIADFVILRGPPNWESKLGVKAAQLSQNSQLAKG----PVS--- 114 (203)
T ss_dssp EEEE-HHHHTSSS----EEETTEEEE--S-EEEEE-TTT-EEEEE--HHHHHHHT-----B----SEEEE----ESS---
T ss_pred ceecccccCCCcccee-EcCCCCcccchhChhhhCCCccCEEEEecCcCHHHHhCcccccccchhhhCCC----Cee---
Confidence 7999999998855543 4455555442 345567889999999984211 2333333211111000 000
Q ss_pred CCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec-CCCcceeEEEEehHHH
Q 018198 272 GWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSGIGFALPIDTV 344 (359)
Q Consensus 272 ~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~-~~~~~~~~~aip~~~i 344 (359)
.+....+.-......+.+. .......-+...+|.||.|+|+.+ +++|++.... .....+.++..|+.-+
T Consensus 115 --~y~~~~~~~~~~sa~i~g~-~~~~~~vls~T~~G~SGtp~y~g~-~vvGvH~G~~~~~~~~n~n~~spip~~ 184 (203)
T PF02122_consen 115 --FYGFSSGEWPCSSAKIPGT-EGKFASVLSNTSPGWSGTPYYSGK-NVVGVHTGSPSGSNRENNNRMSPIPPI 184 (203)
T ss_dssp --TTSEEEEEEEEEE-S-----STTEEEE-----TT-TT-EEE-SS--EEEEEEEE------------------
T ss_pred --eeeecCCCceeccCccccc-cCcCCceEcCCCCCCCCCCeEECC-CceEeecCccccccccccccccccccc
Confidence 1111111111111111111 123556667788999999999877 8999999853 1222445555555433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. ORF2 of Potato leafroll virus (PLrV) encodes a polyprotein which is translated following a -1 frameshift. The polyprotein has a putative linear arrangement of membrane achor-VPg-peptidase-polmerase domains. The serine peptidase domain which is found in this group of sequences belongs to MEROPS peptidase family S39 (clan PA(S)). It is likely that the peptidase domain is involved in the cleavage of the polyprotein []. The nucleotide sequence for the RNA of PLrV has been determined [, ]. The sequence contains six large open reading frames (ORFs). The 5' coding region encodes two polypeptides of 28K and 70K, which overlap in different reading frames; it is suggested that the third ORF in the 5' block is translated by frameshift readthrough near the end of the 70K protein, yielding a 118K polypeptide []. Segments of the predicted amino acid sequences of these ORFs resemble those of known viral RNA polymerases, ATP-binding proteins and viral genome-linked proteins. The nucleotide sequence of the genomic RNA of Beet western yellows virus (BWYV) has been determined []. The sequence contains six long ORFs. A cluster of three of these ORFs, including the coat protein cistron, display extensive amino acid sequence similarity to corresponding ORFs of a second luteovirus: Barley yellow dwarf virus [].; GO: 0004252 serine-type endopeptidase activity, 0022415 viral reproductive process, 0016021 integral to membrane; PDB: 1ZYO_A. |
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.044 Score=38.51 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=55.7
Q ss_pred EEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 48 SVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 48 ~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.....+..|.++.+...|..+|+++.++.....+ .+...+++.+.. . ...++.+.|++.+.|.+|.++
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~-~-~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS-P-VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC-C-CCHHHHHHHHcCCCeEEEEEC
Confidence 4566788999999999999999999999995544 456677777744 3 578999999999999998863
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active |
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.18 Score=35.51 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=55.3
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeee
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~ 115 (359)
+.....+..|.++....+|...++++.++.......+..++++.+.+. .....+.+.|++..+|..+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~ 70 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVE 70 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEE
Confidence 445677889999999999999999999998843334556788777765 68889999999999998775
|
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.13 Score=37.27 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=56.8
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc-cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL-NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~-~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
++.+....+..+..|-+.=..--.|||..-.+.|+.. +.+...+-+++.+ ++..+-+..||+|+.||..|.-.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEe
Confidence 4556666677778888888888899999999999543 3444456777766 56889999999999999999864
|
|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.14 Score=36.01 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=54.1
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
+.....+..|.+..+..+|...|.++.++.....+ .+...+.+.+... ...++.+.|++++.|.+|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~ 70 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVIL 70 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEE
Confidence 34567788999999999999999999999884422 3455666666554 78899999999999999876
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.51 Score=42.11 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC----CeEEEEecCCcEEEE------EEEEEc--
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA----STVKVSFSDQSTFYA------QVVGHD-- 230 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~----~~~~v~~~~g~~~~~------~v~~~d-- 230 (359)
-|....|...+ +-.|||++|+++ |+|++-.|+.+. ..+.+.++.++++.- ++..+|
T Consensus 16 WPWlA~IYvdG-----------~~~CsgvLlD~~-WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~ 83 (267)
T PF09342_consen 16 WPWLADIYVDG-----------RYWCSGVLLDPH-WLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCF 83 (267)
T ss_pred CcceeeEEEcC-----------eEEEEEEEeccc-eEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeee
Confidence 46666676532 347999999987 999999999773 346777777765431 333333
Q ss_pred ---CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCC
Q 018198 231 ---QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPL 271 (359)
Q Consensus 231 ---~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~ 271 (359)
++.+++||.++.+.. .+.|..+.+ .......+.++++|.-.
T Consensus 84 ~~V~~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~ 131 (267)
T PF09342_consen 84 KDVPESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD 131 (267)
T ss_pred eeccccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence 688999999987654 455666644 23344455788888643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo []. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.13 Score=50.63 Aligned_cols=71 Identities=23% Similarity=0.411 Sum_probs=60.4
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE-CChhHHHHHHHHHhhhhceeee
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF-GTDRELQQVVKQLQKLVNVLKV 114 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v 114 (359)
++.++..+++..|+|+.+..+|..+|+++.++.....+.+..++++++. .++..++++.++|+|+.+|...
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 3567788899999999999999999999999988544345678888888 8899999999999999988553
|
|
| >PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.13 Score=41.37 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.5
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.....+|+||-|++|..|+||||+-.+.+
T Consensus 100 ~g~g~~GDSGRpi~DNsGrVVaIVLGG~n 128 (158)
T PF00944_consen 100 TGVGKPGDSGRPIFDNSGRVVAIVLGGAN 128 (158)
T ss_dssp TTS-STTSTTEEEESTTSBEEEEEEEEEE
T ss_pred cCCCCCCCCCCccCcCCCCEEEEEecCCC
Confidence 44567899999999999999999988763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A .... |
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.26 Score=35.33 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=54.6
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccC-CceEEEEEEE-CChhHHHHHHHHHhhhhceeeee
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNK-DRALFTMVVF-GTDRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v~ 115 (359)
+.....+..|.++.+..++...|.++.+++...... +..++.+++. .+.+...++.++|+++++|..+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 455677888999999999999999999998844332 5556666554 67888999999999999886654
|
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.47 Score=34.06 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=53.2
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE--CChhHHHHHHHHHhhhhceeeeee
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF--GTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~--~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
+.....+..|.++.+...+...|.+++.+.......+..++.++++ ..+....+|++.|++++.|..|.-
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4456677789999999999999999999977322223445555555 333489999999999999999874
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.2 Score=35.60 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=53.2
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
....+..|.++.+...|..+|+|+.++.+.... .+...+.+.++. .....+.+.|++...|.++.++
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~--~~~~~~~~~l~~~~~v~~v~~~ 71 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE--PVPDEVLEELRALPGILSAKVV 71 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC--CCCHHHHHHHHcCCCccEEEEE
Confidence 356788999999999999999999999885442 345556666665 3456899999999999998875
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden |
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.51 Score=32.18 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=52.6
Q ss_pred eecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE-CChhHHHHHHHHHhhhhceeeee
Q 018198 50 FVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF-GTDRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 50 ~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v~ 115 (359)
...+..|.++.+..+|...++++..++......+...+.+++. .+......+.+.|++++.|..+.
T Consensus 4 ~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 4 EAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 4567788999999999999999999998443334556667666 56778999999999999987764
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i |
| >PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.67 E-value=1 Score=47.35 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=74.8
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEE--cCCCCEEEEEEcCCCCCccceEecCCCC-------
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGH--DQVNDLAVLHIDAPNHELRPIHVSVSAD------- 257 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~--d~~~DlAll~v~~~~~~~~~~~l~~~~~------- 257 (359)
.|...+|++. ||+|.+|...+...+..--.+...| +++.. .+..|+.+-|+..-..+..|+.+.....
T Consensus 66 ~G~aTLigpq-YiVSV~HN~~gy~~v~FG~~g~~~Y--~iV~RNn~~~~Df~~pRLnK~VTEvaP~~~t~~~~~~~~y~d 142 (769)
T PF02395_consen 66 KGVATLIGPQ-YIVSVKHNGKGYNSVSFGNEGQNTY--KIVDRNNYPSGDFHMPRLNKFVTEVAPAEMTTAGSDSNTYND 142 (769)
T ss_dssp TSS-EEEETT-EEEBETTG-TSCCEECESCSSTCEE--EEEEEEBETTSTEBEEEESS---SS----BBSSTTSTTGGGH
T ss_pred CceEEEecCC-eEEEEEccCCCcCceeecccCCceE--EEEEccCCCCcccceeecCceEEEEecccccccccccccccc
Confidence 3778899987 9999999986655444333334455 44443 3446999999986544444444432200
Q ss_pred CCCCCEEEEEecC-------CC--------CCCceeEeEEeeeecccCCcc-----cccEEEEc----ccCCCCCcccee
Q 018198 258 LRVGKKIYAIGHP-------LG--------WSFTCTTGVISALDREIPGRL-----IQGVIQID----ASVNLGNSGGPL 313 (359)
Q Consensus 258 ~~~G~~v~~iG~p-------~~--------~~~~~~~G~vs~~~~~~~~~~-----~~~~i~~~----~~~~~G~SGgPl 313 (359)
...=...+-+|.. .+ ...-.+.|.+........+.. .......+ ....+||||+||
T Consensus 143 ~~rY~~f~R~GsG~Q~i~~~~g~~~~~~~~ay~yltgGt~~~~~~~~n~~~~~~~~~~~~~~~~~pL~n~~~~GDSGSPl 222 (769)
T PF02395_consen 143 KERYPAFVRVGSGTQYIKDRNGNGTTILGGAYNYLTGGTVYNLPGYGNGSMILSGDLKKFNSYNGPLPNYGSPGDSGSPL 222 (769)
T ss_dssp TTTC-EEEEEESSSEEEEECCEEEEEEEEETTSCEEEEEESSEEEEECTCEEEEESTTTCCCCCSSSBEB--TT-TT-EE
T ss_pred chhchheeecCCceEEEEcCCCCeeEEEEeccceecCCccccccccccceEEEecccccccccCCccccccccCcCCCce
Confidence 0000112223211 11 001122233322111000000 00001111 234579999999
Q ss_pred e--cC---CCeEEEEEeeecCC-CcceeEEEEehHHHHHHHHHH
Q 018198 314 L--DS---SGSLIGVNTFITSG-AFSGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 314 ~--~~---~G~viGi~~~~~~~-~~~~~~~aip~~~i~~~l~~l 351 (359)
| |. +..++|+.+..... +.......+|.+.+.++.++.
T Consensus 223 F~YD~~~kKWvl~Gv~~~~~~~~g~~~~~~~~~~~f~~~~~~~d 266 (769)
T PF02395_consen 223 FAYDKEKKKWVLVGVLSGGNGYNGKGNWWNVIPPDFINQIKQND 266 (769)
T ss_dssp EEEETTTTEEEEEEEEEEECCCCHSEEEEEEECHHHHHHHHHHC
T ss_pred EEEEccCCeEEEEEEEccccccCCccceeEEecHHHHHHHHhhh
Confidence 8 32 34699998887632 223455678888887776653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B. |
| >PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.67 E-value=1 Score=43.28 Aligned_cols=136 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred ceEEEEEEeCCCEEEecccccCCC-CeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCC-CccceEecCCCCCCCCCE
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGA-STVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH-ELRPIHVSVSADLRVGKK 263 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~-~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~-~~~~~~l~~~~~~~~G~~ 263 (359)
++|-||.++++ .++|+-||+... .++. | .+..-+.++..-+++-+++..+.. +++-+-|. +-.+.|.-
T Consensus 379 GsGWGfWVS~~-lfITttHViP~g~~E~F-----G--v~i~~i~vh~sGeF~~~rFpk~iRPDvtgmiLE--eGapEGtV 448 (535)
T PF05416_consen 379 GSGWGFWVSPT-LFITTTHVIPPGAKEAF-----G--VPISQIQVHKSGEFCRFRFPKPIRPDVTGMILE--EGAPEGTV 448 (535)
T ss_dssp TTEEEEESSSS-EEEEEGGGS-STTSEET-----T--EECGGEEEEEETTEEEEEESS-SSTTS---EE---SS--TT-E
T ss_pred CCceeeeecce-EEEEeeeecCCcchhhh-----C--CChhHeEEeeccceEEEecCCCCCCCccceeec--cCCCCceE
Confidence 57999999997 999999999543 2221 1 011113345567888888876543 35555563 23345655
Q ss_pred EEE-EecCCCC--CCceeEeEEeeeecccCCcc---cccEEEE-------cccCCCCCccceeecCCC---eEEEEEeee
Q 018198 264 IYA-IGHPLGW--SFTCTTGVISALDREIPGRL---IQGVIQI-------DASVNLGNSGGPLLDSSG---SLIGVNTFI 327 (359)
Q Consensus 264 v~~-iG~p~~~--~~~~~~G~vs~~~~~~~~~~---~~~~i~~-------~~~~~~G~SGgPl~~~~G---~viGi~~~~ 327 (359)
+.+ |=.|.|. +..+..|......- .+.. ...++.+ |-.+.||+-|.|-+-..| -|+|++.+.
T Consensus 449 ~siLiKR~sGEllpLAvRMgt~AsmkI--qgr~v~GQ~GMLLTGaNAK~mDLGT~PGDCGcPYvyKrgNd~VV~GVH~AA 526 (535)
T PF05416_consen 449 CSILIKRPSGELLPLAVRMGTHASMKI--QGRTVHGQMGMLLTGANAKGMDLGTIPGDCGCPYVYKRGNDWVVIGVHAAA 526 (535)
T ss_dssp EEEEEE-TTSBEEEEEEEEEEEEEEEE--TTEEEEEEEEEETTSTT-SSTTTS--TTGTT-EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcCCccchhhhhhhccceeEEE--cceeecceeeeeeecCCccccccCCCCCCCCCceeeecCCcEEEEEEEehh
Confidence 443 4455543 33445554444321 1110 0112221 445679999999995544 699999998
Q ss_pred cCCCcc
Q 018198 328 TSGAFS 333 (359)
Q Consensus 328 ~~~~~~ 333 (359)
..+++.
T Consensus 527 tr~GNT 532 (535)
T PF05416_consen 527 TRSGNT 532 (535)
T ss_dssp -SSSSE
T ss_pred ccCCCe
Confidence 866653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B. |
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.74 Score=32.87 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=53.9
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE-CChhHHHHHHHHHhhhhceee
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF-GTDRELQQVVKQLQKLVNVLK 113 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~ 113 (359)
+.....+..|.|+.+...+...|.|+.++.+.....+...+.++++ .+.+.+.++.+.|+++++|.-
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 3456678899999999999999999999988433345556777777 578899999999999998753
|
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.73 Score=37.67 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=58.6
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEE--CChhHHHHHHHHHhhhhceeeeeec
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVF--GTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~--~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
..+.....+..|.++.+..+|...+++++++...... .+..++.++++ ..+....++.++|+++++|..|.+.
T Consensus 57 ~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 57 VEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 3577888999999999999999999999999884333 34455666555 3336789999999999999999875
|
|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.2 Score=35.24 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=51.4
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
...++..|.++.+...+...|.|+.++.... +.+...+.+.++.. ...++.++|+++++|.+|.++
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 4667889999999999999999998887622 22444455555544 778999999999999998764
|
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent- |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.11 Score=51.08 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=28.8
Q ss_pred CccccccccCCcEEEeeecccccCCcceeeeeeeeccccce
Q 018198 3 PVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQ 43 (359)
Q Consensus 3 p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~ 43 (359)
+..+.|++ ++|++++|++|+++||. ||.++++++.+.
T Consensus 213 g~~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~ 249 (416)
T PRK13034 213 GEHPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIA 249 (416)
T ss_pred CCCCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHH
Confidence 44566775 59999999999998876 777777766553
|
|
| >PF03510 Peptidase_C24: 2C endopeptidase (C24) cysteine protease family; InterPro: IPR000317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.83 Score=35.39 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=53.6
Q ss_pred EEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEec
Q 018198 190 GFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGH 269 (359)
Q Consensus 190 Gfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~ 269 (359)
++-|. +|.++|+.|+.+..+.+. |..+ +++ ...-|+|+++.+... .+..++++ |.+++ +
T Consensus 3 avHIG-nG~~vt~tHva~~~~~v~-----g~~f--~~~--~~~ge~~~v~~~~~~--~p~~~ig~------g~Pv~---~ 61 (105)
T PF03510_consen 3 AVHIG-NGRYVTVTHVAKSSDSVD-----GQPF--KIV--KTDGELCWVQSPLVH--LPAAQIGT------GKPVY---D 61 (105)
T ss_pred eEEeC-CCEEEEEEEEeccCceEc-----CcCc--EEE--EeccCEEEEECCCCC--CCeeEecc------CCCEE---e
Confidence 45565 689999999988765432 2111 222 245699999998754 56666653 44555 2
Q ss_pred CCCCCCc--eeEeEEeeeecccCCcccccEEEEcccCCCCCccceeec
Q 018198 270 PLGWSFT--CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLD 315 (359)
Q Consensus 270 p~~~~~~--~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~ 315 (359)
+.+.... ...+..........+ -.......+.+||-|-|.||
T Consensus 62 ~~~~~~~t~~~~~~~~t~~~~v~G----~~~~~~~~T~~GDCGlPY~d 105 (105)
T PF03510_consen 62 TWGLHPVTTWSEGTYNTPTGTVNG----WHVKITNPTKKGDCGLPYFD 105 (105)
T ss_pred cCCCccEEEeccceEEcCCcEEEE----EEEeCCCCccCCccCCcccC
Confidence 2222211 111111111100001 11223337788999999886
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. The two signatures that defines this group of calivirus polyproteins identify a cysteine peptidase signature that belongs to MEROPS peptidase family C24 (clan PA(C)). Caliciviruses are positive-stranded ssRNA viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF2 encodes a structural protein []; while ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely those classified as small round structured viruses (SRSVs) and those classed as non-SRSVs. Calicivirus proteases from the non-SRSV group, which are members of the PA protease clan, constitute family C24 of the cysteine proteases (proteases from SRSVs belong to the C37 family). As mentioned above, the protease activity resides within a polyprotein. The enzyme cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis |
| >PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.42 Score=38.51 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=61.2
Q ss_pred EEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEe
Q 018198 189 AGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIG 268 (359)
Q Consensus 189 sGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG 268 (359)
-|+.|+ |..-|.+|--.... +--.-| +..-.+.+.+.|+..-........+.+-.-+ -+.+|++=
T Consensus 15 mgt~vn--GV~wT~~HGagsrt---lAgp~G---pv~q~~~s~~~Dlv~~p~P~Ga~SL~pCtCg-------~~dlylVt 79 (148)
T PF02907_consen 15 MGTCVN--GVMWTVYHGAGSRT---LAGPKG---PVNQMYTSVDDDLVGWPAPPGARSLTPCTCG-------SSDLYLVT 79 (148)
T ss_dssp EEEEET--TEEEEEHHHHTTSE---EEBTTS---EB-ESEEETTTTEEEEE-STTB--BBB-SSS-------SSEEEEE-
T ss_pred ehhEEc--cEEEEEEecCCccc---ccCCCC---cceEeEEcCCCCCcccccccccccCCccccC-------CccEEEEe
Confidence 466775 67888888643310 100111 1233456778898887776644333332222 13566663
Q ss_pred cCCCCCCceeEeEEeeeecccCCcccccEEEE--cccCCCCCccceeecCCCeEEEEEeeec--CCCcceeEEEEehHHH
Q 018198 269 HPLGWSFTCTTGVISALDREIPGRLIQGVIQI--DASVNLGNSGGPLLDSSGSLIGVNTFIT--SGAFSGIGFALPIDTV 344 (359)
Q Consensus 269 ~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~--~~~~~~G~SGgPl~~~~G~viGi~~~~~--~~~~~~~~~aip~~~i 344 (359)
.- ..+-. ..+..... . .+.. -.....|.||||++-.+|.+|||..+.. .+--..+.| +|...+
T Consensus 80 r~----~~v~p-----~rr~gd~~--~-~L~sp~pis~lkGSSGgPiLC~~GH~vG~f~aa~~trgvak~i~f-~P~e~l 146 (148)
T PF02907_consen 80 RD----ADVIP-----VRRRGDSR--A-SLLSPRPISDLKGSSGGPILCPSGHAVGMFRAAVCTRGVAKAIDF-IPVETL 146 (148)
T ss_dssp TT----S-EEE-----EEEESTTE--E-EEEEEEEHHHHTT-TT-EEEETTSEEEEEEEEEEEETTEEEEEEE-EEHHHH
T ss_pred cc----CcEee-----eEEcCCCc--e-EecCCceeEEEecCCCCcccCCCCCEEEEEEEEEEcCCceeeEEE-Eeeeec
Confidence 31 11111 11111100 0 0111 1123469999999988999999988776 222233444 487654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies the Hepatitis C virus NS3 protein as a serine protease which belongs to MEROPS peptidase family S29 (hepacivirin family, clan PA(S)), which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. The NS2 proteinase (IPR002518 from INTERPRO), a zinc-dependent enzyme, performs a single proteolytic cut to release the N terminus of NS3. The action of NS3 proteinase (NS3P), which resides in the N-terminal one-third of the NS3 protein, then yields all remaining non-structural proteins. The C-terminal two-thirds of the NS3 protein contain a helicase. The functional relationship between the proteinase and helicase domains is unknown. NS3 has a structural zinc-binding site and requires cofactor NS4. It has been suggested that the NS3 serine protease of hepatitus C is involved in cell transformation and that the ability to transform requires an active enzyme [].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0019087 transformation of host cell by virus; PDB: 2QV1_B 3LOX_C 2OBQ_C 2OC1_C 2OC0_A 3LON_A 3KNX_A 2O8M_A 2OBO_A 2OC8_A .... |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.8 Score=35.98 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=56.8
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEEC--ChhHHHHHHHHHhhhhceeeeeec
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFG--TDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~--~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.+.....+..|.|+.+...+...|.|++.+...-...+...++++++. ....+.+|...|++++.|.+|.-+
T Consensus 71 tL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~ 144 (147)
T PRK04435 71 TLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELI 144 (147)
T ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEE
Confidence 566778888999999999999999999999763222344556666663 345899999999999999998754
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.9 Score=31.24 Aligned_cols=63 Identities=29% Similarity=0.439 Sum_probs=49.0
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhh
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLV 109 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~ 109 (359)
.+...-.+..|.++.+...+...|.|++.+|+.-. .+.-.+++.+..+++..+++.+.|+++-
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~-~~~f~~~~~v~~~~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL-GGRFTLIMLVSIPEDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE-TTEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE-cCeEEEEEEEEeCcccHHHHHHHHHHHH
Confidence 46677789999999999999999999999999433 3444577778777889999999998863
|
|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.6 Score=31.77 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=45.2
Q ss_pred EEeecCCCCccchhhhhhhhccceeeeeEeeccc-----CCceEEEEEEECCh-hHHHHHHHHHhhhhc
Q 018198 48 SVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-----KDRALFTMVVFGTD-RELQQVVKQLQKLVN 110 (359)
Q Consensus 48 ~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-----~~~~~~~~~~~~~~-~~~~~i~~~L~k~~~ 110 (359)
.....+..|.++.+..+|..+|+|++.++....+ .+.-.|++.+.... ....++.+.|+++.+
T Consensus 3 ~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 3 EVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCD 71 (81)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999999999999999994332 13334555555433 357788887777653
|
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in |
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.1 Score=33.49 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=50.3
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECC--hhHHHHHHHHHhhhhceeeee
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGT--DRELQQVVKQLQKLVNVLKVS 115 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~--~~~~~~i~~~L~k~~~v~~v~ 115 (359)
+.+.....+.+|.++.+..+|..+|+|++.++.. ...+.-.+.+++... ....+.+.+.|+++.+...+.
T Consensus 4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQT-IMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH-hhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 4677888999999999999999999999999983 233333344454443 234677778787777655444
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.17 Score=49.17 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=38.1
Q ss_pred cccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccc
Q 018198 7 RPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNC 70 (359)
Q Consensus 7 ~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~ 70 (359)
+|. .|+||+++|+||+++ .++|+++++.+.............+++.++|+.++-.+-.+
T Consensus 196 ~p~-~~~Div~~slsk~~g----~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al 254 (392)
T PLN03227 196 KPM-VHAEIVTFSLENAFG----SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATAT 254 (392)
T ss_pred CCC-CCceEEEeechhhhh----ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHH
Confidence 453 499999999999986 56676666654331111122334578888898777666444
|
|
| >PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.4 Score=35.26 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=25.0
Q ss_pred ccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 295 QGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 295 ~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
.+++....+..||+.||+|+ .+--||||++++.
T Consensus 78 ~~~l~g~Gp~~PGdCGg~L~-C~HGViGi~Tagg 110 (127)
T PF00947_consen 78 YNLLIGEGPAEPGDCGGILR-CKHGVIGIVTAGG 110 (127)
T ss_dssp ECEEEEE-SSSTT-TCSEEE-ETTCEEEEEEEEE
T ss_pred cCceeecccCCCCCCCceeE-eCCCeEEEEEeCC
Confidence 35555667899999999999 5556999999974
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A. |
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
Probab=86.54 E-value=3.6 Score=28.95 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=46.0
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhh
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKL 108 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~ 108 (359)
++...+.+..|.+..+...|...|+|+.++...... .+...+.+.++.++ .+++.+.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHHC
Confidence 355678899999999999999999999999875443 34556777777644 34777777664
|
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=86.41 E-value=4 Score=28.43 Aligned_cols=57 Identities=18% Similarity=0.420 Sum_probs=39.9
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhh
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQK 107 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k 107 (359)
++...+.+.+|.|+.+...|..+|+|+.++-+...++ ...+-+.+ .+ .+++.+-|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~-~~---~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE-FGILRLIV-SD---PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEE-CC---HHHHHHHHHH
Confidence 5677899999999999999999999999998744333 23233333 22 3455555554
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
Probab=86.29 E-value=4.1 Score=28.92 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=45.3
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecc--cCCc--eEEEEEEECChhHHHHHHHHHhhhhce
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL--NKDR--ALFTMVVFGTDRELQQVVKQLQKLVNV 111 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~--~~~~--~~~~~~~~~~~~~~~~i~~~L~k~~~v 111 (359)
+...+.+.+|.|..+...+...|.|+.++..... +... ..+.+..+..+ ..++|.+.|++..++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhCcccE
Confidence 4567889999999999999999999999987543 2222 33444443333 477888888765433
|
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.24 E-value=3.5 Score=33.21 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=59.2
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE--CChhHHHHHHHHHhhhhceeeeeec
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF--GTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~--~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.++....++.-|.||..=.-.+.+++|+|++.=.-.-.++..+|+.+. +-+..++.|+..|+|+..|.+|.-.
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv 147 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV 147 (150)
T ss_pred EEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence 477889999999999999999999999999876322234556777766 4478899999999999999998754
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.38 E-value=0.16 Score=48.68 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=30.4
Q ss_pred ccccccccCCcEEEeeecccccCCcceeeeeeeeccccc
Q 018198 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42 (359)
Q Consensus 4 ~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~ 42 (359)
-++.-++.|||+|+.|.-|+++|-. +|.++++++.+
T Consensus 205 ~l~~~la~GaDLV~~SgdKllgGPq---aGii~GkKelI 240 (395)
T COG1921 205 DLREALALGADLVSFSGDKLLGGPQ---AGIIVGKKELI 240 (395)
T ss_pred chhHHHhcCCCEEEEecchhcCCCc---cceEechHHHH
Confidence 3456689999999999999999987 88888887654
|
|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.1 Score=31.96 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=49.5
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECCh--hHHHHHHHHHhhhhceee
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTD--RELQQVVKQLQKLVNVLK 113 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~--~~~~~i~~~L~k~~~v~~ 113 (359)
.+.....+..|.++.+..+|..+|.|++.++.. ...+.-.|.+++.... ....++.+.|+++.+-..
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~-~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQT-IMDGYFTMIMIVDISESNLDFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH-hhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 566788899999999999999999999999983 3333334555555433 457888888888775433
|
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
Probab=83.85 E-value=6.1 Score=28.24 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=53.0
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.....+..|.++-+...+...|.++.++.... + +.-++++.+. +.+...++.++|++.+.|..|...
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~-~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~ 70 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP-K-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTV 70 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEec-C-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEe
Confidence 456677888999999999999999999999832 2 2234555544 566789999999999999988764
|
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence |
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
Probab=83.48 E-value=7.3 Score=28.29 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=45.8
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEE--EEEECC--hhHHHHHHHHHhhhhc
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFT--MVVFGT--DRELQQVVKQLQKLVN 110 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~--~~~~~~--~~~~~~i~~~L~k~~~ 110 (359)
+.....+..|.|+..-..|...|+|+.++-..+...+...++ +.++++ .+...++.+.|++...
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 334556789999999999999999999997755543333344 444454 6778888888887533
|
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi |
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=82.36 E-value=3.7 Score=29.49 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=45.4
Q ss_pred EEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChh-HHHHHHHHHhhhhc
Q 018198 48 SVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDR-ELQQVVKQLQKLVN 110 (359)
Q Consensus 48 ~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~-~~~~i~~~L~k~~~ 110 (359)
...-.+.+|.+..+..+|..+|.|++.++..-. .+.-.+.+.+...+. ...++.+.|+++-+
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~-~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI-HGRLSLGILVQIPDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE-cCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455678899999999999999999999987222 233445556665443 67888888887654
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
Probab=81.78 E-value=6.7 Score=27.10 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=44.7
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeeccc----CCceEEEEEEECC-hhHHHHHHHHHhhh
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLN----KDRALFTMVVFGT-DRELQQVVKQLQKL 108 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~----~~~~~~~~~~~~~-~~~~~~i~~~L~k~ 108 (359)
....+..|.|..+...+...|.++.++...... .+...+.+.++.. .+..+++.+.|++.
T Consensus 3 v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 3 VELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 345688999999999999999999999885432 2344566666544 47778888888774
|
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
Probab=81.70 E-value=5 Score=28.66 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=45.4
Q ss_pred EEEeecCCCCccchhhhhhhhccceeeeeEeec-ccCCceEEEEEEECCh--hHHHHHHHHHhhhhc
Q 018198 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIG-LNKDRALFTMVVFGTD--RELQQVVKQLQKLVN 110 (359)
Q Consensus 47 l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~-~~~~~~~~~~~~~~~~--~~~~~i~~~L~k~~~ 110 (359)
+.....+..|.++.+..+|..+|+|++.++..- .....-.|.+.+..+. ....++.+.|+++.+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345667889999999999999999999999942 1222333444444443 367888888877653
|
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
Probab=81.62 E-value=6.9 Score=27.29 Aligned_cols=62 Identities=11% Similarity=0.302 Sum_probs=45.2
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCC-ceEEEEEEECChhHHHHHHHHHhhh
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKD-RALFTMVVFGTDRELQQVVKQLQKL 108 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~-~~~~~~~~~~~~~~~~~i~~~L~k~ 108 (359)
.+.....+.+|.|..+..+|...|+++.++.+.....+ ...+.+++... ...+++.+.|++.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~~ 65 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKEA 65 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHHc
Confidence 45667889999999999999999999999987443222 33455666533 3677888877763
|
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=81.35 E-value=11 Score=26.90 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=46.4
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeecccCCce--EEEEEEEC--ChhHHHHHHHHHhhhhc
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRA--LFTMVVFG--TDRELQQVVKQLQKLVN 110 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~--~~~~~~~~--~~~~~~~i~~~L~k~~~ 110 (359)
....+..|.|+..-..|..+|+|+.+|--.+...+.. .+-|.+++ ++...+++.+.|++...
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~ 69 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE 69 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 3446789999999999999999999995544333232 45666667 57888899999988544
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech |
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=80.98 E-value=5.2 Score=28.99 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhc
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVN 110 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~ 110 (359)
.+.....+..|.++....++..+|.|++.++..- ..+.--|.+.+..+....+++.+.|+++.+
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGSWDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEeccccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999944 223223333444334456777776666553
|
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int |
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=80.09 E-value=4.8 Score=26.86 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=34.6
Q ss_pred EeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEEC
Q 018198 49 VFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFG 93 (359)
Q Consensus 49 ~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~ 93 (359)
....+..|.+++....|...|+|+.++++...+.+...+.+.++.
T Consensus 3 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 3 VFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 456788999999999999999999999985544344445555544
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=80.04 E-value=0.76 Score=43.92 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=26.2
Q ss_pred ccccccCCcEEEeeecccccCCcceeeeeeeeccccc
Q 018198 6 LRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42 (359)
Q Consensus 6 ~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~ 42 (359)
+.+.++|+|+++.|++|++++.. -+|.++++.+.+
T Consensus 185 ~~~~~~~~d~~~~s~~K~l~~~~--~~G~l~~~~~~~ 219 (361)
T cd06452 185 VSGKELGADFIVGSGHKSMAASA--PIGVLATTEEWA 219 (361)
T ss_pred CCHHHcCCCEEEecCCccccCCC--CeEEEEECHHHH
Confidence 45668899999999999998665 356676665433
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 3qo6_A | 348 | Crystal Structure Analysis Of The Plant Protease De | 9e-63 | ||
| 1l1j_A | 239 | Crystal Structure Of The Protease Domain Of An Atp- | 9e-24 | ||
| 3otp_A | 459 | Crystal Structure Of The Degp Dodecamer With A Mode | 6e-23 | ||
| 3mh4_A | 456 | Htra Proteases Are Activated By A Conserved Mechani | 7e-23 | ||
| 4a8d_A | 448 | Degp Dodecamer With Bound Omp Length = 448 | 7e-23 | ||
| 3mh5_A | 456 | Htra Proteases Are Activated By A Conserved Mechani | 7e-23 | ||
| 2zle_A | 448 | Cryo-Em Structure Of Degp12OMP Length = 448 | 8e-23 | ||
| 3mh7_A | 456 | Htra Proteases Are Activated By A Conserved Mechani | 6e-22 | ||
| 1ky9_A | 448 | Crystal Structure Of Degp (Htra) Length = 448 | 6e-22 | ||
| 3cs0_A | 448 | Crystal Structure Of Degp24 Length = 448 | 7e-22 | ||
| 1y8t_A | 324 | Crystal Structure Of Rv0983 From Mycobacterium Tube | 7e-22 | ||
| 4a8a_A | 436 | Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 1 | 4e-21 | ||
| 3stj_A | 345 | Crystal Structure Of The Protease + Pdz1 Domain Of | 4e-21 | ||
| 3sti_A | 245 | Crystal Structure Of The Protease Domain Of Degq Fr | 8e-21 | ||
| 3pv4_A | 354 | Structure Of Legionella Fallonii Degq (Delta-Pdz2 V | 1e-20 | ||
| 3pv2_A | 451 | Structure Of Legionella Fallonii Degq (Wt) Length = | 2e-20 | ||
| 3pv3_A | 451 | Structure Of Legionella Fallonii Degq (S193a Varian | 2e-20 | ||
| 3pv5_A | 451 | Structure Of Legionella Fallonii Degq (N189gP190G V | 1e-19 | ||
| 3lgv_A | 241 | H198p Mutant Of The Degs-Deltapdz Protease Length = | 2e-18 | ||
| 3lgt_A | 241 | Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease | 2e-18 | ||
| 2qf3_A | 243 | Structure Of The Delta Pdz Truncation Of The Degs P | 2e-18 | ||
| 3lgu_A | 241 | Y162a Mutant Of The Degs-Deltapdz Protease Length = | 2e-18 | ||
| 3lh3_A | 241 | Dfp Modified Degs Delta Pdz Length = 241 | 2e-18 | ||
| 3gcn_A | 340 | Crystal Structure Of Degs H198pD320A MUTANT MODIFIE | 2e-18 | ||
| 3lgi_A | 237 | Structure Of The Protease Domain Of Degs (Degs-Delt | 2e-18 | ||
| 2rce_B | 243 | Dfp Modified Degs Delta Pdz Length = 243 | 2e-18 | ||
| 1soz_A | 314 | Crystal Structure Of Degs Protease In Complex With | 3e-18 | ||
| 2r3u_A | 211 | Crystal Structure Of The Pdz Deletion Mutant Of Deg | 5e-18 | ||
| 3lgw_A | 241 | H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease | 6e-18 | ||
| 2qgr_A | 243 | Structure Of The R178a Mutant Of Delta Pdz Degs Pro | 9e-18 | ||
| 3lgy_A | 241 | R178a Mutant Of The Degs-Deltapdz Protease Length = | 9e-18 | ||
| 3lh1_A | 241 | Q191a Mutant Of The Degs-Deltapdz Length = 241 | 1e-17 | ||
| 3b8j_A | 243 | Q191a Mutant Of Degs-Deltapdz Length = 243 | 1e-17 | ||
| 2qf0_A | 243 | Structure Of The Delta Pdz Truncation Of The Degs P | 1e-17 | ||
| 1te0_A | 318 | Structural Analysis Of Degs, A Stress Sensor Of The | 1e-17 | ||
| 1sot_A | 320 | Crystal Structure Of The Degs Stress Sensor Length | 2e-17 | ||
| 3num_A | 332 | Substrate Induced Remodeling Of The Active Site Reg | 3e-15 | ||
| 3nzi_A | 334 | Substrate Induced Remodeling Of The Active Site Reg | 4e-15 | ||
| 3nwu_A | 227 | Substrate Induced Remodeling Of The Active Site Reg | 5e-15 | ||
| 3tjn_A | 228 | Htra1 Catalytic Domain, Apo Form Length = 228 | 6e-15 | ||
| 3tjo_A | 231 | Htra1 Catalytic Domain, Mutationally Inactivated Le | 6e-15 | ||
| 1lcy_A | 325 | Crystal Structure Of The Mitochondrial Serine Prote | 3e-11 | ||
| 1ibj_A | 464 | Crystal Structure Of Cystathionine Beta-Lyase From | 6e-10 | ||
| 1n8p_A | 393 | Crystal Structure Of Cystathionine Gamma-lyase From | 4e-05 | ||
| 3aej_A | 389 | Reaction Intermediate Structure Of Entamoeba Histol | 1e-04 | ||
| 2nmp_A | 403 | Crystal Structure Of Human Cystathionine Gamma Lyas | 3e-04 | ||
| 3elp_B | 410 | Structure Of Cystationine Gamma Lyase Length = 410 | 3e-04 | ||
| 3acz_A | 389 | Crystal Structure Of Entamoeba Histolytica Methioni | 5e-04 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 5e-04 | ||
| 3k6y_A | 237 | Crystal Structure Of Rv3671c Protease From M. Tuber | 9e-04 |
| >pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1 Length = 348 | Back alignment and structure |
|
| >pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239 | Back alignment and structure |
|
| >pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model Substrate Length = 459 | Back alignment and structure |
|
| >pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456 | Back alignment and structure |
|
| >pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp Length = 448 | Back alignment and structure |
|
| >pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456 | Back alignment and structure |
|
| >pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP Length = 448 | Back alignment and structure |
|
| >pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456 | Back alignment and structure |
|
| >pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra) Length = 448 | Back alignment and structure |
|
| >pdb|3CS0|A Chain A, Crystal Structure Of Degp24 Length = 448 | Back alignment and structure |
|
| >pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium Tuberculosis- Proteolytically Active Form Length = 324 | Back alignment and structure |
|
| >pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In Complex With Lysozyme Length = 436 | Back alignment and structure |
|
| >pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq From Escherichia Coli Length = 345 | Back alignment and structure |
|
| >pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From Escherichia Coli Length = 245 | Back alignment and structure |
|
| >pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant) Length = 354 | Back alignment and structure |
|
| >pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt) Length = 451 | Back alignment and structure |
|
| >pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant) Length = 451 | Back alignment and structure |
|
| >pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT) Length = 451 | Back alignment and structure |
|
| >pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease Length = 241 | Back alignment and structure |
|
| >pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease Length = 241 | Back alignment and structure |
|
| >pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease Length = 243 | Back alignment and structure |
|
| >pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease Length = 241 | Back alignment and structure |
|
| >pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz Length = 241 | Back alignment and structure |
|
| >pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY DFP IN Complex With Omp Peptide (Yqf) Length = 340 | Back alignment and structure |
|
| >pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz) At 1.65 A Length = 237 | Back alignment and structure |
|
| >pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An Activating Peptide Length = 314 | Back alignment and structure |
|
| >pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs Length = 211 | Back alignment and structure |
|
| >pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease Length = 241 | Back alignment and structure |
|
| >pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease Length = 243 | Back alignment and structure |
|
| >pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease Length = 241 | Back alignment and structure |
|
| >pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz Length = 241 | Back alignment and structure |
|
| >pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz Length = 243 | Back alignment and structure |
|
| >pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease Length = 243 | Back alignment and structure |
|
| >pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The Bacterial Periplasm Length = 318 | Back alignment and structure |
|
| >pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor Length = 320 | Back alignment and structure |
|
| >pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 332 | Back alignment and structure |
|
| >pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 334 | Back alignment and structure |
|
| >pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 227 | Back alignment and structure |
|
| >pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form Length = 228 | Back alignment and structure |
|
| >pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated Length = 231 | Back alignment and structure |
|
| >pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease Htra2 Length = 325 | Back alignment and structure |
|
| >pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464 | Back alignment and structure |
|
| >pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393 | Back alignment and structure |
|
| >pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389 | Back alignment and structure |
|
| >pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403 | Back alignment and structure |
|
| >pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410 | Back alignment and structure |
|
| >pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M. Tuberculosis, Active Form Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 1e-85
Identities = 139/227 (61%), Positives = 172/227 (75%), Gaps = 9/227 (3%)
Query: 140 FVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIRED---QSETEFLRGSGAGFLWDQD 196
FV S P KLQ DEL T+R+F+EN SVV+I NL +R+D E +GSG+GF+WD+
Sbjct: 4 FVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQ 63
Query: 197 GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSA 256
GHIVTNYHVI GAS ++V+ +DQ+TF A+VVG DQ D+AVL IDAP ++LRPI V VSA
Sbjct: 64 GHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSA 123
Query: 257 DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQIDASVNLGNSGGP 312
DL VG+K++AIG+P G T TTGVIS L REI GR IQ VIQ DA++N GNSGGP
Sbjct: 124 DLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGP 183
Query: 313 LLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSRY 357
LLDSSG+LIG+NT I SGA SG+GF++P+DTV GIVDQLV+F +
Sbjct: 184 LLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKV 230
|
| >1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Length = 239 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 9e-59
Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
G+GF++D +G+I+TNYHV+ GA + V+ D S + A+ +G D+ D+AV+ I A +
Sbjct: 55 ASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASD 114
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGV----IQI 300
+ + S +++G+ AIG+PLG+ T T GV+SA +R IP G IQ
Sbjct: 115 KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQT 174
Query: 301 DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFS-GIGFALPIDTVRGIVDQLVKF 354
DA++N GNSGGPLL+ G +IG+NT I + + +GFA+PI+TV+ +D ++
Sbjct: 175 DAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQ 229
|
| >1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 3e-57
Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 34/215 (15%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---------TVKVS 215
SVV + +++ G+G + +G I+TN HVI A+ V+
Sbjct: 18 SVVML--------ETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVT 69
Query: 216 FSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSF 275
FSD T VVG D +D+AV+ + + L PI + S+DLRVG+ + AIG PLG
Sbjct: 70 FSDGRTAPFTVVGADPTSDIAVVRVQGVS-GLTPISLGSSSDLRVGQPVLAIGSPLGLEG 128
Query: 276 TCTTGVISALDREIPGRLIQG-------VIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328
T TTG++SAL+R + G IQ DA++N GNSGG L++ + L+GVN+ I
Sbjct: 129 TVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIA 188
Query: 329 S---------GAFSGIGFALPIDTVRGIVDQLVKF 354
+ G+GFA+P+D + I D+L+
Sbjct: 189 TLGADSADAQSGSIGLGFAIPVDQAKRIADELIST 223
|
| >3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Length = 231 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 5e-57
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 9/198 (4%)
Query: 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ 219
E+ +VV I + S+ E SG+GF+ +DG IVTN HV+ VKV +
Sbjct: 38 EKIAPAVVHIELFR-KLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNG 96
Query: 220 STFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTT 279
+T+ A++ D+ D+A++ ID +L + + S++LR G+ + AIG P T TT
Sbjct: 97 ATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTT 155
Query: 280 GVISALDREIP----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGI 335
G++S R IQ DA +N GN+GGPL++ G +IG+NT + +GI
Sbjct: 156 GIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---AGI 212
Query: 336 GFALPIDTVRGIVDQLVK 353
FA+P D ++ + +
Sbjct: 213 SFAIPSDKIKKFLTESHD 230
|
| >1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 6e-57
Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 9/201 (4%)
Query: 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ 219
E+ +VV+I + R E +G+GF+ DG IVTN HV+ V+V
Sbjct: 22 EKTAPAVVYI-EILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSG 80
Query: 220 STFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTT 279
T+ A V D V D+A L I L + + SAD+R G+ + A+G P T T+
Sbjct: 81 DTYEAVVTAVDPVADIATLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITS 139
Query: 280 GVISALDREIPGRLIQGV----IQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGI 335
G++S+ R + IQ DA+++ GN+GGPL++ G +IGVNT + +GI
Sbjct: 140 GIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT---AGI 196
Query: 336 GFALPIDTVRGIVDQLVKFSR 356
FA+P D +R + + K +
Sbjct: 197 SFAIPSDRLREFLHRGEKKNS 217
|
| >3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-56
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 32 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 91
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 92 LLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 150
Query: 285 LDREIPG-RLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-----GAFSGIGFA 338
R Q +Q DAS+N GNSGG L++S G L+G+NT GIGFA
Sbjct: 151 TGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFA 210
Query: 339 LPIDTVRGIVDQLVKFSR 356
+P I+D+L++ R
Sbjct: 211 IPFQLATKIMDKLIRDGR 228
|
| >1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 8e-56
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 21 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 80
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I A L I ++ +G + AIG+P T T G+ISA
Sbjct: 81 LLVGSDSLTDLAVLIIKATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 139
Query: 285 LDR-EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-----GAFSGIGFA 338
R + Q +Q DAS+N GNSGG L++S G L+G+NT GIGFA
Sbjct: 140 TGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFA 199
Query: 339 LPIDTVRGIVDQLVKFSR 356
+P I+D+L++ R
Sbjct: 200 IPFQLATKIMDKLIRDGR 217
|
| >3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-54
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ 219
E+ +VV I + S+ E SG+GF+ +DG IVTN HV+ VKV +
Sbjct: 21 EKIAPAVVHIELFR-KLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNG 79
Query: 220 STFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTT 279
+T+ A++ D+ D+A++ ID +L + + S++LR G+ + AIG P T TT
Sbjct: 80 ATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTT 138
Query: 280 GVISALDREIPGRLIQGV----IQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGI 335
G++S R ++ IQ DA +N GN+GGPL++ G +IG+NT + +GI
Sbjct: 139 GIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---AGI 195
Query: 336 GFALPIDTVRGIVD-----QLVKFSR 356
FA+P D ++ + Q +
Sbjct: 196 SFAIPSDKIKKFLTESHDRQAKGKAI 221
|
| >3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Length = 245 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 5e-53
Identities = 71/188 (37%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 173 GIREDQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQ 231
G + G G+G + + G+++TN HVI A + + +D F A+++G D
Sbjct: 50 GDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDD 109
Query: 232 VNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG 291
+D+A+L I P+ +L I ++ S LRVG A+G+P G T T+G++SAL R
Sbjct: 110 QSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLN 168
Query: 292 RLIQGV---IQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRG 346
++G+ IQ DAS+N GNSGG LL+ +G LIG+NT I + G GIGFA+P + R
Sbjct: 169 --LEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMART 226
Query: 347 IVDQLVKF 354
+ QL+ F
Sbjct: 227 LAQQLIDF 234
|
| >3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-52
Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 173 GIREDQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQ 231
G + G G+G + + G+++TN HVI A + + +D F A+++G D
Sbjct: 50 GDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDD 109
Query: 232 VNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG 291
+D+A+L I P+ +L I ++ S LRVG A+G+P G T T+G++SAL R
Sbjct: 110 QSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLN 168
Query: 292 RL-IQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIV 348
++ IQ DAS+N GNSGG LL+ +G LIG+NT I G GIGFA+P + R +
Sbjct: 169 LEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLA 228
Query: 349 DQLVKF 354
QL+ F
Sbjct: 229 QQLIDF 234
|
| >1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 9e-52
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Query: 185 RGSGAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDR-EIPGRLIQGVIQIDA 302
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA
Sbjct: 145 K-NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDA 203
Query: 303 SVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKF 354
++N GN+GG L++ +G LIG+NT I G GIGFA+P + V+ + Q+V++
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEY 257
|
| >4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 9e-52
Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 185 RGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
G G+G + + G+++TN HVI A + + +D F A+++G D +D+A+L I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDR-EIPGRLIQGVIQIDA 302
+ +L I ++ S LRVG A+G+P G T T+G++SAL R + ++ IQ DA
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDA 180
Query: 303 SVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKF 354
S+N GN+GG LL+ +G LIG+NT I G GIGFA+P + R + QL+ F
Sbjct: 181 SINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDF 234
|
| >3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 4e-51
Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 11/179 (6%)
Query: 185 RGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAP 243
G+G + D +G I+TN HVI AS + V+ D A+++G D DLAVL IDA
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK 135
Query: 244 NHELRPIHVSVSADLRVGKKIYAIGHPLG-----WSFTCTTGVISALDR-EIPGRLIQGV 297
N L+ + + S L VG + AIG+P G S + T G++SAL R ++ ++
Sbjct: 136 N--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENF 193
Query: 298 IQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKF 354
IQ DA++N GNSGG L+++ G LIG+NT I G GIGFA+PI+ V+ + Q++KF
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
|
| >3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Length = 237 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 7e-50
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 19/213 (8%)
Query: 151 DELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS 210
L + SVV I +L R + G GF+ D ++TN HV+ G++
Sbjct: 29 PALVNNPVVAATEPSVVKIRSLAPRCQK------VLEGTGFVISPD-RVMTNAHVVAGSN 81
Query: 211 TVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHP 270
V V D+ F A VV +D D+A+L + P V + + G + +G+P
Sbjct: 82 NVTVYAGDK-PFEATVVSYDPSVDVAILAVPHLP---PPPLVFAAEPAKTGADVVVLGYP 137
Query: 271 LGWSFTCTTGVISALDREI-------PGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGV 323
G +FT T I R P + + V I A V G+SGGPL+D +G ++GV
Sbjct: 138 GGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGV 197
Query: 324 NTFITSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
+ GF L V G + ++
Sbjct: 198 VFGAAIDD-AETGFVLTAGEVAGQLAKIGATQP 229
|
| >2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Length = 200 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 8e-47
Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 21/184 (11%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQST---------FYAQVVGHDQVNDLA 236
G G + IVTN H+ K S + +V + DLA
Sbjct: 22 VGGTGVVVG-KNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLA 80
Query: 237 VLHIDAPNHELRPI-----HVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG 291
++H+ + E + + +V +I IG+P G + I G
Sbjct: 81 IVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISG 140
Query: 292 RLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNT--FITSGAFSGIGFALPIDTVRGIVD 349
++ DA GNSG P+L+S LIG+ + G I +
Sbjct: 141 TFME----FDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQN 196
Query: 350 QLVK 353
+ K
Sbjct: 197 NIEK 200
|
| >2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Length = 210 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 4e-45
Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 23/191 (12%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKV--------SFSDQSTFYAQVVGHDQVNDLA 236
GF+ I+TN HV + + + D++
Sbjct: 22 FKDATGFVIG-KNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDIS 80
Query: 237 VLHIDAPNHELRPIHVSV---------SADLRVGKKIYAIGHPLGWSFTCTTGVISALDR 287
V++I+ E P + + D +V KI IG+PL + + +
Sbjct: 81 VMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIK 140
Query: 288 EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRG 346
I ++ DA + GNSG P+L+S+ +IGV G ++
Sbjct: 141 RIKD----NILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKD 196
Query: 347 IVDQLVKFSRY 357
+ + ++ +
Sbjct: 197 FIQKHIEQHHH 207
|
| >2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Length = 204 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 9e-40
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGAST--------VKVSFSDQSTFYAQVVGHDQVNDLA 236
S GF+ I+TN HV + +++ + D++
Sbjct: 21 FKSATGFVVG-KNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVS 79
Query: 237 VLHIDAPNHELRPIH---------VSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDR 287
V+ ++ E P +A + G++I IG+P + +
Sbjct: 80 VIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVM 139
Query: 288 EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVR 345
+ G I A GNSG P+L+S+ L+G++ ++
Sbjct: 140 SVEGS----SIVYSAHTESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIK 195
Query: 346 GIVDQLV 352
+ + +
Sbjct: 196 KFIAENI 202
|
| >1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Length = 242 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-38
Identities = 42/246 (17%), Positives = 91/246 (36%), Gaps = 42/246 (17%)
Query: 135 DSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWD 194
+ + G L + + + IGN+ ++ + S G L
Sbjct: 12 EKWNKYYGVNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKG--------QTSATGVLIG 63
Query: 195 QDGHIVTNYHVICGAS--TVKVSFSDQST-------------FYAQVVGHDQVN---DLA 236
++ ++TN H+ A+ KVSF + + + + DLA
Sbjct: 64 KNT-VLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLA 122
Query: 237 VLHIDAPNH------ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP 290
++ + + ++ P + S DL+ G K+ IG+P S ++
Sbjct: 123 LIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFD--HKVNQMHRSEIELTT- 179
Query: 291 GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPI-DTVRGI 347
+ ++ GNSG + +S+G L+G+++ S I + + I + V+ I
Sbjct: 180 ---LSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRI 236
Query: 348 VDQLVK 353
+++ +
Sbjct: 237 INEKNE 242
|
| >2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Length = 163 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-32
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 18/158 (11%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244
G G GF IVT HV+ + V V + + A+V + D+A +
Sbjct: 20 EGKGTGFFSG--NDIVTAAHVVGNNTFVNVCYEGL-MYEAKVRYMPE-KDIAFITCPGDL 75
Query: 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASV 304
H + +S + + ++ G + ++
Sbjct: 76 HPTAR--LKLSKNPDYSCVTVMAYVNEDLVVSTAAAMVY-------GNTLSYAVRTQD-- 124
Query: 305 NLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPID 342
G SG P+ D ++ V+ T G P D
Sbjct: 125 --GMSGAPVCDKYCRVLAVHQTNTGYT-GGAVIIDPTD 159
|
| >1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-31
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 151 DELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS 210
D+ I + S +G + ++ G L ++ IVTNYHV A+
Sbjct: 21 DKELYTHITDNARSPYNSVGTVFVKG--------STLATGVLIGKN-TIVTNYHVAREAA 71
Query: 211 --TVKVSFSDQSTFYAQVVG-----------------HDQVNDLAVLHIDAPNH------ 245
+ F+ A+ + Q DLA++ +
Sbjct: 72 KNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGD 131
Query: 246 ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVN 305
++P ++ D+ G K +G+P S +I + Q
Sbjct: 132 LIQPANIPDHIDIAKGDKYSLLGYPYN------YSAYSLYQSQIE---MFNDSQYFGYTE 182
Query: 306 LGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
+GNSG + + G LIG+++ G+ F I ++ + +
Sbjct: 183 VGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDT 233
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-24
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 39 SERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRAL--FTMVVFGTDR 96
+++++ H +S+ V ++ G++ ++ +F RR NI S+ V G ++ L ++V G D+
Sbjct: 24 TDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITV-GESETPGLSRLVIMVKGDDK 82
Query: 97 ELQQVVKQLQKLVNVLKVS 115
++Q+ KQ KLV V+KV+
Sbjct: 83 TIEQIEKQAYKLVEVVKVT 101
|
| >1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 2e-24
Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 36/211 (17%)
Query: 168 WIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVS------------ 215
+ + + +G + +D ++TN HV+ +
Sbjct: 21 PVTYIQVEAPTGT-----FIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDN 74
Query: 216 FSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE------LRPIHVSVSADLRVGKKIYAIGH 269
+ + Q+ + DLA++ ++P +S +A+ +V + I G+
Sbjct: 75 YPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGY 134
Query: 270 PLGWSFT---CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTF 326
P + G I+ L E +Q D S GNSG P+ + +IG++
Sbjct: 135 PGDKPVATMWESKGKITYLKGE--------AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 186
Query: 327 ITSGAFSGIGFALPIDTVRGIVDQLVKFSRY 357
+ + + + +
Sbjct: 187 GVPNE-FNGAVFINENVRNFLKQNIEDINFA 216
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 3e-24
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 42 VQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRAL--FTMVVFGTDRELQ 99
+ R +SV + +ESG LSR+ G+F++R NIESL V D L T+ G ++ L+
Sbjct: 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTV-APTDDPTLSRMTIQTVGDEKVLE 59
Query: 100 QVVKQLQKLVNVLKVS 115
Q+ KQL KLV+VL+VS
Sbjct: 60 QIEKQLHKLVDVLRVS 75
|
| >2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 189 AGFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDA---- 242
GF + +T H GA+T + + + ND ++
Sbjct: 16 LGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIP 75
Query: 243 PNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQ 299
+ + ++ +A+ VG + G G +G ++AL+ + G ++ G+I+
Sbjct: 76 KDGTVGGQDITSAANATVGMAVTRRGSTTGT----HSGSVTALNATVNYGGGDVVYGMIR 131
Query: 300 IDASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSGIGFALPIDTV 344
+ G+SGGPL IG+ + + + + G F P+
Sbjct: 132 TNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-23
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRAL--FTMVVFGTDRELQQV 101
RH IS+ + +E+G LSR+ G+F+ R NIESL V +D L T+V G D ++Q+
Sbjct: 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSV-APTEDPTLSRMTLVTNGPDEIVEQI 62
Query: 102 VKQLQKLVNVLKVS 115
KQL KL+ V+K+
Sbjct: 63 TKQLNKLIEVVKLI 76
|
| >3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A Length = 213 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 6e-16
Identities = 33/173 (19%), Positives = 46/173 (26%), Gaps = 30/173 (17%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH 245
GSG F D VT HV+ G S V G D A+
Sbjct: 30 GSGGVFTIDGKIKCVTAAHVLTGNSARVSGVGFNQMLDFDVKG-----DFAIADCPNWQG 84
Query: 246 ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVN 305
+ + G GVI
Sbjct: 85 VAPKAQFCEDGWTGRAYWLTSSG--------VEPGVIGN-----GFAFCF--------TA 123
Query: 306 LGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFSRYC 358
G+SG P++ +G L+GV+T S G P + + +K S
Sbjct: 124 CGDSGSPVITEAGELVGVHT--GSNKQGGGIVTRPSGQFCNV--KPIKLSELS 172
|
| >1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} Length = 191 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 9e-14
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 13/145 (8%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-----STFYAQVVGHDQVNDLAVLHI 240
G G D + ++T +HV C + + + D++ D A++ +
Sbjct: 29 GFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQVSVEDWEISMSSSDKMLDFAIVRV 88
Query: 241 DAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQI 300
+ + I G G S + +
Sbjct: 89 PTHVWSKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSE-------FTWKLTH 141
Query: 301 DASVNLGNSGGPLLDSSGSLIGVNT 325
G SG PL SS ++G++
Sbjct: 142 TCPTAAGWSGTPLY-SSRGVVGMHV 165
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 29/40 (72%), Positives = 32/40 (80%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
MSPV+ RPLE GA IVMHSA+KFIA HSDVMA +AV E
Sbjct: 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296
|
| >1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 Length = 187 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-11
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 21/170 (12%)
Query: 189 AGFLWDQDGH--IVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQ-VNDLAVLHIDAPNH 245
A F + G VT H C + S S + G ND ++ +
Sbjct: 16 AAFNVTKGGARYFVTAGH--CTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSS 73
Query: 246 EL--------RPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI--PGRLIQ 295
+S +A+ VG+ I G T+G ++A++ + +
Sbjct: 74 PAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKV----TSGTVTAVNVTVNYGDGPVY 129
Query: 296 GVIQIDASVNLGNSGGPLLDSSGSLIGVNT-FITSGAFSGIGFALPIDTV 344
+++ A G+SGG + +G+++ +G P+
Sbjct: 130 NMVRTTACSAGGDSGGAHF-AGSVALGIHSGSSGCSGTAGSAIHQPVTEA 178
|
| >2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 5e-11
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 30/163 (18%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKV------------SFSDQSTFYAQVVGHDQV 232
+G + +D ++TN HV+ ++ + Q+ +
Sbjct: 33 TFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 91
Query: 233 NDLAVLHIDAPNHE------LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCT---TGVIS 283
DLA++ ++P +S +A+ + + I G+P G I+
Sbjct: 92 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKIT 151
Query: 284 ALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTF 326
L E +Q D S GNSG P+ + +IG++
Sbjct: 152 YLKGE--------AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 186
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+SP + PL FGA IV+HSA+K+I HSDV+ +A N++
Sbjct: 182 LSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK 221
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 7e-11
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
MSP RPL GA I M+SA+K++ HSDV+ ++VN E
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCE 231
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 9e-11
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILS 59
SP++ PL+ G IV+HSA+K+I H+DV+A + ++ + + I+S
Sbjct: 124 ASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+SP + PL GA +V+HS +K++ HSDV+A +
Sbjct: 177 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP 216
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P+ + L GA +V+HSA+KF+ H+DV+A G
Sbjct: 240 ATPLNQKALALGADLVLHSATKFLGGHNDVLA-GCISGPL 278
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
SP + +PL GA +V+HS +K+I HSDV+ + N E
Sbjct: 191 ASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE 230
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAV 37
SP++ RPL GA +V+HSA+K++ HSD++ GIAV
Sbjct: 192 ASPMLQRPLSLGADLVVHSATKYLNGHSDMVG-GIAV 227
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 3e-10
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
SP L+PLE GA I +HS SK+I H DV+ + +
Sbjct: 184 TSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTA 223
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILS 59
+P + RPLE GA +V+HSA+K+++ H D+ A + + V R + +LS
Sbjct: 190 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLS 248
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILS 59
SP++ P++FG +V+HSA+K+I H+DV+A I ++ +Q+ + ++S
Sbjct: 188 CSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERV 42
+ V+ + L+FG + + +A+K++ HSD M G AV + R
Sbjct: 209 AAGVLFKALDFGIDVSIQAATKYLVGHSDAMI-GTAVCNARC 249
|
| >2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ... Length = 198 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 7e-10
Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 14/165 (8%)
Query: 189 AGFLWDQDGH--IVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
GF + VT H +T ++ + TF A+V ND A + + +
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTFAARVFPG---NDRAWVSLTSAQTL 75
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPL---GWSFTCTTGVISALDREI--PGRLIQGVIQID 301
L + S G A+G + G + G I+A + ++G+ Q +
Sbjct: 76 LPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGN 135
Query: 302 ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRG 346
A + G+SGG + S+G G + SG
Sbjct: 136 ACMGRGDSGGSWITSAGQAQG----VMSGGNVQSNGNNCGIPASQ 176
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESG-ILS 59
MSP +PL+ GA IV+HS +K+I H DV+ GI V + V + D +G +S
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIG-GIIVGKQEFIDQARFVGLKDITGGCMS 247
|
| >2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A Length = 181 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%)
Query: 189 AGFLWDQDGH--IVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
GF +G +T H +++ + ++F G + ++ A +
Sbjct: 16 LGFNVSVNGVAHALTAGHCTNISASWSIGTRTGTSFPNNDYGIIRHSNPAAADGRVYLYN 75
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI---PGRLIQGVIQIDAS 303
++ + + VG+ + G G +G ++ L+ + ++ G+IQ +
Sbjct: 76 GSYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATVNYGSSGIVYGMIQTNVC 131
Query: 304 VNLGNSGGPLLDSS---GSLIGVNTFITSGAFSGIGFALPIDTV 344
G+SGG L S G G + +G G F P+
Sbjct: 132 AQPGDSGGSLFAGSTALGLTSGGSGNCRTG---GTTFYQPVTEA 172
|
| >1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 7e-09
Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 22/174 (12%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGAS--------TVKVSFSDQSTFYAQVVGH-------- 229
S G L + I+TN H + + +V +D +
Sbjct: 30 SSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGY 88
Query: 230 ----DQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISAL 285
D AV+ D G I G+P + +
Sbjct: 89 INTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEM 148
Query: 286 DREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFAL 339
+ R + GNSG +LD + ++GV+ S G
Sbjct: 149 SGSVT-REDTNLAYYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKA 201
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILS 59
+P++ + G +V++S +K I V+ G + + + +S
Sbjct: 206 ATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLG-GAILGDREYIDGPVQKLMRHTGPAMS 263
|
| >2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} Length = 189 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 19/160 (11%)
Query: 197 GHIVTNYHVI---CGASTVKVSFSDQSTFYAQVVGHD----QVNDLAVLHIDAPNHELRP 249
G V + CG + + + + G+D + L N+
Sbjct: 20 GFAVNGGFITAGHCGRTGATTANPTGTFAGSSFPGNDYAFVRTGAGVNLLAQVNNYSGGR 79
Query: 250 IHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI--PGRLIQGVIQIDASVNLG 307
+ V+ VG + G GW G I+AL+ + P ++G+I+ G
Sbjct: 80 VQVAGHTAAPVGSAVCRSGSTTGW----HCGTITALNSSVTYPEGTVRGLIRTTVCAEPG 135
Query: 308 NSGGPLLDSS---GSLIGVNTFITSGAFSGIGFALPIDTV 344
+SGG LL + G G + +G G F P++ +
Sbjct: 136 DSGGSLLAGNQAQGVTSGGSGNCRTG---GTTFFQPVNPI 172
|
| >2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} Length = 186 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-07
Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 20/167 (11%)
Query: 189 AGFLWDQDGH--IVTNYHVICGASTVKVSFSDQSTFYAQVVGHD----QVNDLAVLHIDA 242
GF Q T H CG++ +VS + + G D ++ +
Sbjct: 18 IGFSVRQGSQTGFATAGH--CGSTGTRVSSPSGTVAGSYFPGRDMGWVRITSADTVTPLV 75
Query: 243 PNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI--PGRLIQGVIQI 300
+ + V+ S + G + G GW G I + ++ + + G+ +
Sbjct: 76 NRYNGGTVTVTGSQEAATGSSVCRSGATTGW----RCGTIQSKNQTVRYAEGTVTGLTRT 131
Query: 301 DASVNLGNSGGPLLDSS---GSLIGVNTFITSGAFSGIGFALPIDTV 344
A G+SGGP L S G G SG GI F PI+ +
Sbjct: 132 TACAEGGDSGGPWLTGSQAQGVTSGGTGDCRSG---GITFFQPINPL 175
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 53/348 (15%), Positives = 103/348 (29%), Gaps = 113/348 (32%)
Query: 58 LSRIDGVFTRRNCNIESL---------GVIGLNK---------DRAL---FTMVVF---- 92
+SR+ R + L GV+G K + +F
Sbjct: 131 VSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 93 GTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEPFFLPCSGVDSTPDFVGSQP---CKLQ 149
+ V++ LQKL+ + + S S S + S+P C L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 150 MDEL---ETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVI 206
+ + + F N+S + L + T+FL + HI ++H
Sbjct: 250 LLNVQNAKAWNAF--NLSCKI----LLTTRFKQVTDFLSAATT-------THISLDHH-- 294
Query: 207 CGASTVKVSFS-DQS-TFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKI 264
++ + D+ + + + DL P E+
Sbjct: 295 ------SMTLTPDEVKSLLLKYLDCR-PQDL-------P-REVLTT-------------- 325
Query: 265 YAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQ---------IDASVNLGNSGGPLLD 315
+P +I+ R+ I++S+N +L+
Sbjct: 326 ----NPR------RLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLN-------VLE 367
Query: 316 SSG--------SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFS 355
+ S+ + I + S I F + V +V++L K+S
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 1 MSPVVL-RPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
+ P GA ++ S K I + V+
Sbjct: 211 GEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEA 255
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 1 MSPVVLR-PLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
V + P + GA I+ S K I IA E V +
Sbjct: 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQ 266
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
+ + RPL +GA +V+ S +K+ + H V+ G ++
Sbjct: 181 AAGALCRPLAWGAHVVVESLTKWASGHGSVLG-GAVLSR 218
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
P +L G I + S++KFI+ + G+ ++
Sbjct: 208 PPYLLEAKRLGVDIEVLSSTKFISGGGTSVG-GVLIDH 244
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 1 MSPVVL-RPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
+ P + GA ++ S K I +A + +++
Sbjct: 222 GEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEK 266
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 11/45 (24%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 1 MSPVVL-RPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
V P E GA I+ S K IA V
Sbjct: 205 GEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDL 249
|
| >2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like cysteine protease, capsid protein, core protein; 1.9A {Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB: 2j92_A 2wv4_A 2wv5_A Length = 209 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 196 DGHIVTNYHVIC--------GASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
+ H+ + S F +V G D ++D A++ + +++
Sbjct: 39 GTAYLVPRHLFAEKYDKIMLDGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLH-RGNKV 97
Query: 248 RPI--HVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDA 302
R I H +A ++ G + + + +G + G + G+ A
Sbjct: 98 RDITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFAYKA 157
Query: 303 SVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPI 341
+ G +GG +L G+ + S +G+G+ +
Sbjct: 158 ATRAGYAGGAVLAKDGADTFI-VGTHSAGGNGVGYCSCV 195
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS 39
M +LRPL +GA +V HS +K++ H V+A G V+
Sbjct: 185 MGGYLLRPLAWGAALVTHSLTKWVGGHGAVIA-GAIVDG 222
|
| >2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} Length = 188 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-05
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 17/156 (10%)
Query: 199 IVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQ-----VNDLAVLHIDAPNHELRPIHVS 253
VT H + V + + G+D ++ + ++ + + VS
Sbjct: 30 FVTAGHCGSVGTQVSIGNGRGVFERSVFPGNDAAFVRGTSNFTLTNLVSRYNSGGYATVS 89
Query: 254 VSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI--PGRLIQGVIQIDASVNLGNSGG 311
S+ +G ++ G GW G I A ++ + P + + + G+SGG
Sbjct: 90 GSSTAPIGSQVCRSGSTTGW----YCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGG 145
Query: 312 PLLDSS---GSLIGVNTFITSGAFSGIGFALPIDTV 344
+ + G G + +G G F ++ +
Sbjct: 146 SFISGTQAQGVTSGGSGNCRTG---GTTFYQEVNPM 178
|
| >2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 334 GIGFALPIDTVRGIVDQLVKF 354
G+GFA+P + I++QL K
Sbjct: 3 GLGFAIPANDAINIIEQLEKN 23
|
| >1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3 Length = 198 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 6e-04
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 31/143 (21%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH 245
G+G+ + + + ++T HV+ A+ + D + + D A
Sbjct: 15 GTGSVWTRNNEVVVLTASHVVGRANMATLKIGDAML----TLTFKKNGDFAEAVTTQSEL 70
Query: 246 ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASV- 304
L + P W TG G++ + +
Sbjct: 71 P------GNWPQLHFAQPTTG---PASWC--TATGDEE------------GLLSGEVCLA 107
Query: 305 --NLGNSGGPLLDSSGSLIGVNT 325
G+SG ++ +++GV+T
Sbjct: 108 WTTSGDSGSAVVQ-GDAVVGVHT 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 3sti_A | 245 | Protease DEGQ; serine protease, PDZ domain, chaper | 100.0 | |
| 3qo6_A | 348 | Protease DO-like 1, chloroplastic; protease, HTRA, | 100.0 | |
| 3lgi_A | 237 | Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro | 100.0 | |
| 1l1j_A | 239 | Heat shock protease HTRA; hydrolase, serine protei | 100.0 | |
| 3stj_A | 345 | Protease DEGQ; serine protease, PDZ domain, protea | 100.0 | |
| 4a8c_A | 436 | Periplasmic PH-dependent serine endoprotease DEGQ; | 100.0 | |
| 3tjo_A | 231 | Serine protease HTRA1; peptidase, hydrolase; HET: | 100.0 | |
| 1te0_A | 318 | Protease DEGS; two domains, serine protease, PDZ, | 100.0 | |
| 3pv2_A | 451 | DEGQ; trypsin fold, PDZ domain, chaperone protease | 100.0 | |
| 4fln_A | 539 | Protease DO-like 2, chloroplastic; protease, DEG, | 100.0 | |
| 1ky9_A | 448 | Protease DO, DEGP, HTRA; protein quality control, | 100.0 | |
| 3num_A | 332 | Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom | 100.0 | |
| 1y8t_A | 324 | Hypothetical protein RV0983; serine protease, stru | 100.0 | |
| 1lcy_A | 325 | HTRA2 serine protease; apoptosis, PDZ domain, casp | 100.0 | |
| 3k6y_A | 237 | Serine protease, possible membrane-associated seri | 100.0 | |
| 2as9_A | 210 | Serine protease; trypsin-like fold, hydrolase; 1.7 | 99.91 | |
| 2w5e_A | 163 | Putative serine protease; coiled coil, transmembra | 99.91 | |
| 1agj_A | 242 | Epidermolytic toxin A; hydrolase, serine protease; | 99.89 | |
| 2w7s_A | 200 | Serine protease SPLA; hydrolase, family S1; 1.80A | 99.87 | |
| 2o8l_A | 274 | V8 protease, taphylococcal serine; serine protease | 99.87 | |
| 1wcz_A | 268 | Glutamyl endopeptidase; virulence factor, hydrolas | 99.85 | |
| 2h5c_A | 198 | Alpha-lytic protease; serine protease, acylation t | 99.85 | |
| 2vid_A | 204 | Serine protease SPLB; hydrolase; 1.80A {Staphyloco | 99.85 | |
| 2qa9_E | 185 | Streptogrisin-B; chymotrypsin-type serine peptidas | 99.81 | |
| 1qtf_A | 246 | Exfoliative toxin B; serine protease, superantigen | 99.81 | |
| 2oua_A | 188 | Serine protease, protein NAPA; kinetic stability, | 99.8 | |
| 1hpg_A | 187 | Glutamic acid specific protease; serine protease, | 99.8 | |
| 2ea3_A | 189 | Chymotrypsin; celloulomonas, protease, hydrolase; | 99.77 | |
| 2pfe_A | 186 | Protease A, alkaline serine protease, TFPA; beta-b | 99.76 | |
| 2sga_A | 181 | Proteinase A; hydrolase (serine proteinase); 1.50A | 99.72 | |
| 1mbm_A | 198 | NSP4 proteinase, chymotrypsin-like serine protease | 99.71 | |
| 1pq7_A | 224 | Trypsin; ultra-high resolution, catalysis, hydrola | 99.63 | |
| 4ag1_A | 226 | Chymase; hydrolase-de novo protein complex, inhibi | 99.63 | |
| 1a7s_A | 225 | Heparin binding protein; serine protease homolog, | 99.62 | |
| 1cgh_A | 224 | Cathepsin G; inflammation, specificity, serine pro | 99.62 | |
| 1npm_A | 225 | Neuropsin; serine proteinase, glycoprotein; HET: N | 99.62 | |
| 1mza_A | 240 | Pro-granzyme K; apoptosis, serine protease, S1 fam | 99.61 | |
| 1eq9_A | 222 | Chymotrypsin; FIRE ANT, serine proteinase, hydrola | 99.61 | |
| 2zch_P | 237 | Prostate-specific antigen; human PSA, kallikrein r | 99.6 | |
| 3rp2_A | 224 | RAT MAST cell protease II; serine proteinase; 1.90 | 99.6 | |
| 1iau_A | 227 | Granzyme B; hydrolase-hydrolase inhibitor complex; | 99.6 | |
| 3fzz_A | 227 | Granzyme C; hydrolase, cytolysis, protease, serine | 99.6 | |
| 1fuj_A | 221 | PR3, myeloblastin; hydrolase, serine protease, gly | 99.59 | |
| 1fxy_A | 228 | Coagulation factor XA-trypsin chimera; protease, c | 99.59 | |
| 1azz_A | 226 | Collagenase; complex (serine protease/inhibitor), | 99.59 | |
| 3h7t_A | 235 | Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0 | 99.59 | |
| 2xw9_A | 228 | Complement factor D; immune system, hydrolase, ser | 99.59 | |
| 2z7f_E | 218 | Leukocyte elastase; serine protease, serine protea | 99.58 | |
| 1lo6_A | 223 | Kallikrein 6, HK6; serine protease, human kallikre | 99.58 | |
| 1hj8_A | 222 | Trypsin I; hydrolase, radiation damage, disulphide | 99.58 | |
| 3mfj_A | 223 | Cationic trypsin; serine proteinase, hydrolase; 0. | 99.58 | |
| 1bru_P | 241 | Elastase, PPE; serine protease, hydrolase; HET: 1N | 99.58 | |
| 4i8h_A | 223 | Cationic trypsin, beta-trypsin; serine protease, h | 99.57 | |
| 3s9c_A | 234 | Vipera russelli proteinase RVV-V gamma; serine pro | 99.57 | |
| 2bdg_A | 223 | Kallikrein-4; serine proteinase, S1 subsite, 70-80 | 99.57 | |
| 1p3c_A | 215 | Glutamyl-endopeptidase; serine protease, hydrolase | 99.57 | |
| 3fan_A | 213 | Non-structural protein; chymotrypsin-like, N-termi | 99.57 | |
| 1gvz_A | 237 | Kallikrein-1E2; antigen, prostate specific antigen | 99.57 | |
| 4e7n_A | 238 | Snake-venom thrombin-like enzyme; beta-barrel, hyd | 99.57 | |
| 1ton_A | 235 | Tonin; hydrolase(serine proteinase); 1.80A {Rattus | 99.57 | |
| 1ao5_A | 237 | Glandular kallikrein-13; serine protease, protein | 99.57 | |
| 1gvk_B | 240 | Elastase 1, peptide inhibitor; hydrolase, serine p | 99.57 | |
| 3s69_A | 234 | Thrombin-like enzyme defibrase; beta-barrel, serin | 99.56 | |
| 1euf_A | 227 | Duodenase; serine protease, dual specificity, hydr | 99.56 | |
| 1elt_A | 236 | Elastase; serine proteinase; 1.61A {Salmo salar} S | 99.56 | |
| 1ym0_A | 238 | Fibrinotic enzyme component B; two chains, glycosy | 99.56 | |
| 1orf_A | 234 | Granzyme A; hydrolase-hydrolase inhibitor complex; | 99.56 | |
| 1si5_H | 240 | Scatter factor, hepatocyte growth factor, SF, hepa | 99.56 | |
| 1spj_A | 238 | Kallikrein 1; serine protease, KLK1, HK1, hydrolas | 99.55 | |
| 2psx_A | 227 | Kallikrein-5; zinc inhibition, stratum corneum, gl | 99.55 | |
| 2qxi_A | 224 | Kallikrein-7; S1 pocket, chloromethyl ketone, alte | 99.55 | |
| 2aiq_A | 231 | Protein C activator; snake venom serine proteinase | 99.55 | |
| 2zgc_A | 240 | Granzyme M; serine protease, cytolysis, glycoprote | 99.54 | |
| 2hlc_A | 230 | Collagenase; serine protease, hydrolase, collagen | 99.54 | |
| 3h7o_A | 228 | Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8 | 99.54 | |
| 1m9u_A | 241 | Earthworm fibrinolytic enzyme; hydrolase, serine p | 99.53 | |
| 1aut_C | 250 | Activated protein C; serine proteinase, plasma cal | 99.53 | |
| 2asu_B | 234 | Hepatocyte growth factor-like protein; serine prot | 99.53 | |
| 3beu_A | 224 | Trypsin, SGT; beta sheets, serine protease, hydrol | 99.53 | |
| 2oq5_A | 232 | Transmembrane protease, serine 11E; type II trans- | 99.52 | |
| 3mhw_U | 247 | Urokinase-type plasminogen activator; hydrolase, b | 99.52 | |
| 3ncl_A | 241 | Suppressor of tumorigenicity 14 protein; proteinas | 99.52 | |
| 1pyt_D | 251 | TC, PCPA-TC, chymotrypsinogen C; ternary complex ( | 99.52 | |
| 3gov_B | 251 | MAsp-1; complement, serine protease, beta barrel, | 99.51 | |
| 2r0l_A | 248 | Hepatocyte growth factor activator; serine proteas | 99.51 | |
| 1rtf_B | 252 | (TC)-T-PA, two chain tissue plasminogen activator; | 99.51 | |
| 2any_A | 241 | Kininogenin, plasma kallikrein, light chain, fletc | 99.51 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 99.51 | |
| 1sgf_A | 240 | 7S NGF, nerve growth factor; growth factor (beta-N | 99.51 | |
| 2f91_A | 237 | Hepatopancreas trypsin; trypsin, canonical inhibit | 99.51 | |
| 3bg8_A | 238 | Coagulation factor XIA light chain; protease inhib | 99.5 | |
| 3tvj_B | 242 | Mannan-binding lectin serine protease 2 B chain; i | 99.5 | |
| 2jde_A | 276 | Urokinase-type plasminogen activator; plasminogen | 99.49 | |
| 2olg_A | 278 | Pro-phenoloxidase activating enzyme-I; prophenolox | 99.49 | |
| 3gyl_B | 261 | Prostasin; ENAC, zymogen, divalent cation, channel | 99.49 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.49 | |
| 1t8o_A | 245 | Chymotrypsin A; chymotrypsin, serine proteinase, B | 99.48 | |
| 1fon_A | 240 | Procarboxypeptidase A-S6; truncated zymogen E, ser | 99.48 | |
| 2jkh_A | 241 | Activated factor XA heavy chain; plasma, calcium, | 99.48 | |
| 1ddj_A | 247 | Plasminogen; catalytic domain, blood clotting; 2.0 | 99.48 | |
| 2qy0_B | 242 | Complement C1R subcomponent; serine protease, beta | 99.48 | |
| 1yc0_A | 283 | Hepatocyte growth factor activator; hydrolase/inhi | 99.47 | |
| 2f9n_A | 245 | Alpha I tryptase; serine proteinase, trypsin-like, | 99.47 | |
| 4dgj_A | 235 | Enteropeptidase catalytic light chain; serine prot | 99.47 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 99.46 | |
| 4f4o_C | 347 | Haptoglobin; globin fold, serine protease fold, co | 99.45 | |
| 1fiw_A | 290 | Beta-acrosin heavy chain; anti-parallel beta-barre | 99.45 | |
| 2bdy_A | 289 | Thrombin; thrombin, complex structure, hydrolase, | 99.45 | |
| 2wph_S | 235 | Coagulation factor IXA heavy chain; serine proteas | 99.44 | |
| 2bz6_H | 254 | Blood coagulation factor VIIA; serine protease, en | 99.44 | |
| 3rm2_H | 259 | Thrombin heavy chain; serine protease, kringle, hy | 99.44 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 99.44 | |
| 1z8g_A | 372 | Serine protease hepsin; serine protease hepsin, pr | 99.43 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 99.41 | |
| 3cp7_A | 218 | Alkaline serine protease Al20; trypsin-like, hydro | 99.41 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 99.4 | |
| 1zyo_A | 191 | Serine protease; beta-barrel, glutamyl endopeptida | 99.4 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.39 | |
| 2b9l_A | 394 | Prophenoloxidase activating factor; CLIP domain, e | 99.38 | |
| 1md8_A | 329 | C1R complement serine protease; innate immunity, a | 99.38 | |
| 2vnt_A | 276 | Urokinase-type plasminogen activator; UPA, inhibit | 99.38 | |
| 1zjk_A | 403 | Mannan-binding lectin serine protease 2; beta barr | 99.34 | |
| 1elv_A | 333 | Complement C1S component; trypsin-like serin prote | 99.33 | |
| 1arb_A | 268 | Achromobacter protease I; hydrolase(serine proteas | 99.32 | |
| 2xxl_A | 408 | GRAM-positive specific serine protease, isoform B; | 99.32 | |
| 1gpz_A | 399 | Complement C1R component; hydrolase, activation, i | 99.29 | |
| 3nxp_A | 424 | Prethrombin-1; allostery, blood coagulation, hydro | 99.26 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.26 | |
| 4dur_A | 791 | Plasminogen, serine protease; fibrinolysis, hydrol | 99.24 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 99.23 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.22 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.19 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 99.19 | |
| 2f83_A | 625 | Coagulation factor XI; protease, apple domain, hyd | 99.16 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.13 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 99.13 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.09 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 99.04 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.98 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 98.96 | |
| 3mmg_A | 241 | Nuclear inclusion protein A; 3C-type protease, TEV | 98.89 | |
| 1yph_C | 131 | Chymotrypsin A, chain B; serine protease, hydrolas | 98.82 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.81 | |
| 2pka_B | 152 | Kallikrein A; serine proteinase; 2.05A {Sus scrofa | 98.78 | |
| 1lvm_A | 229 | Catalytic domain of the nuclear inclusion protein | 98.67 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 98.65 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 98.59 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 98.59 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 98.56 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 98.55 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 98.4 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 98.15 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 98.09 | |
| 2hal_A | 212 | Hepatitis A protease 3C; 3C protease, inhibitor de | 98.04 | |
| 3zve_A | 190 | 3C protease; hydrolase, michael inhibitor; HET: G8 | 97.82 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 97.8 | |
| 3qzr_A | 187 | 3C protein; chymotrypsin-fold, beta-ribbon, hydrol | 97.8 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 97.79 | |
| 3q3y_A | 191 | HEVB EV93 3C protease; cysteine trypsin-like prote | 97.77 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 97.76 | |
| 4dcd_A | 190 | Protease 3C, genome polyprotein; antiviral inhibit | 97.72 | |
| 2b0f_A | 182 | Picornain 3C (protease 3C) (P3C); beta barrel, hyd | 97.64 | |
| 1cqq_A | 180 | Type 2 rhinovirus 3C protease; viral protein, hydr | 97.59 | |
| 2bhg_A | 209 | Foot-and-mouth disease virus 3C protease; chymotry | 97.57 | |
| 2pka_A | 80 | Kallikrein A; serine proteinase; 2.05A {Sus scrofa | 97.32 | |
| 2ijd_1 | 644 | Picornain 3C, RNA-directed RNA polymerase; RNA-dep | 96.86 | |
| 1yph_E | 97 | Chymotrypsin A, chain C; serine protease, hydrolas | 96.58 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 96.38 | |
| 4ash_A | 185 | NS6 protease; hydrolase, trypsin-like, calicivirus | 96.01 | |
| 1wxr_A | 1048 | Haemoglobin protease; hemoglobine protease, autotr | 95.79 | |
| 2fyq_A | 194 | Chymotrypsin-like cysteine proteinase; protease, n | 95.13 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 94.9 | |
| 2fp7_B | 172 | Serine protease NS3; flavivirus, NS3 protease, NS2 | 94.0 | |
| 2ggv_B | 185 | NS3, non-structural protein 3; beta barrel, serine | 93.96 | |
| 2fom_B | 185 | Polyprotein; flavivirus, NS3 protease, NS2B cofact | 93.89 | |
| 3e90_B | 198 | NS3 protease; trypsin-like serine protease, protea | 93.83 | |
| 3u1j_B | 191 | Serine protease NS3; serine protease, ER MEM hydro | 93.7 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 93.34 | |
| 3lkw_A | 236 | Fusion protein of nonstructural protein 2B and non | 93.15 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 92.93 | |
| 1ep5_B | 157 | Capsid protein C, coat protein C; beta barrel, hyd | 92.69 | |
| 1vcp_A | 149 | Semliki forest virus capsid protein; virus coat pr | 92.51 | |
| 4agk_A | 158 | Capsid protein, coat protein, C; hydrolase, viral | 92.25 | |
| 2yew_A | 253 | Capsid protein, coat protein; alphavirus, molecula | 91.83 | |
| 1svp_A | 161 | Sindbis virus capsid protein; chymotrypsin-like se | 91.76 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 91.08 | |
| 1kxf_A | 264 | Sindbis virus capsid protein; chymotrypsin-like se | 90.43 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 89.0 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 88.98 | |
| 3su6_A | 203 | NS3 protease, NS4A protein; drug resistance, drug | 88.71 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 86.96 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 86.27 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 85.84 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 80.33 |
| >3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=282.50 Aligned_cols=204 Identities=36% Similarity=0.590 Sum_probs=163.3
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC----------Cccc-------ccccceEEEEEEeCC-CEEEecccccCCCCeEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED----------QSET-------EFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVS 215 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~----------~~~~-------~~~~~~GsGfii~~~-g~vlT~~Hvv~~~~~~~v~ 215 (359)
++.++++++.||||.|.+...... +++. ....+.||||+|+++ ||||||+||+.+...+.|.
T Consensus 14 ~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~~a~~i~V~ 93 (245)
T 3sti_A 14 SLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQ 93 (245)
T ss_dssp BSHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC----CEEEE
T ss_pred CHHHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEeCCCCEEEEcHHHhCCCCEEEEE
Confidence 578899999999999998764431 1111 112578999999998 9999999999999999999
Q ss_pred ecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecc-cCCccc
Q 018198 216 FSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLI 294 (359)
Q Consensus 216 ~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~~~~ 294 (359)
+.+++.++++++..|+.+||||||++.+ ..+++++|+++..++.|++|+++|||++...+++.|+|+...+. ......
T Consensus 94 ~~dg~~~~a~vv~~d~~~DlAlLkv~~~-~~~~~~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~~~~~~~~~~~ 172 (245)
T 3sti_A 94 LNDGREFDAKLIGSDDQSDIALLQIQNP-SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGL 172 (245)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTTBEEEEEECGGGSCCEEEEEEEEECSSCSSCCTTC
T ss_pred ECCCCEEEEEEEEecCCCCEEEEEeccC-CCCceeeecCcCCCCCCCEEEEEECCCCCCCcEEeeEEeeecccccCCCCc
Confidence 9999999999999999999999999764 35889999877788999999999999999999999999998776 333344
Q ss_pred ccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCccc
Q 018198 295 QGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYC 358 (359)
Q Consensus 295 ~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~ 358 (359)
..++++|+.+++|+|||||||.+|+||||+++... ++..+++||||++.+++++++|+++|++.
T Consensus 173 ~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~~~ 238 (245)
T 3sti_A 173 ENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIL 238 (245)
T ss_dssp SSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_pred cCEEEEcCCcCCCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcCCCC
Confidence 56899999999999999999999999999999873 34568999999999999999999998764
|
| >3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=291.47 Aligned_cols=216 Identities=63% Similarity=0.987 Sum_probs=188.8
Q ss_pred CCCCCchhhhhHHHhhhcCCCeeEEEEeeeeecCCccc---ccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCc
Q 018198 144 QPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSET---EFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQS 220 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~---~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~ 220 (359)
++....+.+.+..++++++.+|||.|.......+.+.. ..+.+.||||+|+++||||||+||+.+...+.|.+.+++
T Consensus 8 ~~~~~~~~e~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~ 87 (348)
T 3qo6_A 8 TPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQT 87 (348)
T ss_dssp -CCCCCHHHHHHHHHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSC
T ss_pred CccccCcchhHHHHHHHHhCCCEEEEEEEeecccccccccccccCceEEEEEEeCCCEEEECHHHhCCCcEEEEEECCCC
Confidence 45567888999999999999999999998776665432 234678999999999999999999999999999999999
Q ss_pred EEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC----Cccccc
Q 018198 221 TFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQG 296 (359)
Q Consensus 221 ~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~----~~~~~~ 296 (359)
.++++++..|+.+||||||++.+...+++++|+++..+..|++++++|||.+...+++.|.|+...+... +.....
T Consensus 88 ~~~a~~v~~d~~~DlAlLkl~~~~~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~~~~~~~~~~~~~~~ 167 (348)
T 3qo6_A 88 TFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQD 167 (348)
T ss_dssp EEEEEEEEEEGGGTEEEEECCCCGGGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECCSSSSSCEEE
T ss_pred EEEEEEEEEcCcCCEEEEEEcCCCCCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEeeccccccccCCCcccC
Confidence 9999999999999999999997654688899987788899999999999999888999999998876543 223346
Q ss_pred EEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 297 VIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 297 ~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
++++++.+++|+|||||+|.+|+||||+++... +...+++|+||++.+++++++++++|++.|
T Consensus 168 ~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g~~~~ 232 (348)
T 3qo6_A 168 VIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTR 232 (348)
T ss_dssp EEEECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHSSCCC
T ss_pred EEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCCceee
Confidence 799999999999999999999999999999873 235789999999999999999999999875
|
| >3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=275.19 Aligned_cols=206 Identities=35% Similarity=0.495 Sum_probs=176.8
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCC
Q 018198 153 LETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQV 232 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~ 232 (359)
.++.++++++.+|||+|........+.......+.||||+|+++||||||+||+.+...+.|.+.+++.++++++..|+.
T Consensus 20 ~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~~~~~~~V~~~~g~~~~a~vv~~d~~ 99 (237)
T 3lgi_A 20 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSL 99 (237)
T ss_dssp CBCHHHHHHHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEETTTEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEETT
T ss_pred cCHHHHHHHhCCcEEEEEEEecccCcccccccceEEEEEEEeCCCEEEEeeeecCCCCEEEEEeCCCCEEEEEEEEEcCC
Confidence 35678899999999999988754433222334578999999998999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCC-cccccEEEEcccCCCCCccc
Q 018198 233 NDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPG-RLIQGVIQIDASVNLGNSGG 311 (359)
Q Consensus 233 ~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~-~~~~~~i~~~~~~~~G~SGg 311 (359)
+|||||+++.+. .+++++|+++..+..|+.++++|||.+....++.|.|+...+.... .....++++++.+++|+|||
T Consensus 100 ~DlAll~l~~~~-~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~~~~~~~~~~~~~~i~~d~~i~~G~SGG 178 (237)
T 3lgi_A 100 TDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGG 178 (237)
T ss_dssp TTEEEEECCCSS-CCCCCCCCTTCCCCTTBEEEEEECGGGSCSEEEEEEEEEECCSSCCTTSCSCCEEECSCCCTTCTTC
T ss_pred CCEEEEEecCCC-CCceEeccCcccCCCCCEEEEEECCCCCCCcEEEEEEEecccccccCCCcCCEEEEcCccCCCCchH
Confidence 999999998754 4788899877788999999999999998889999999988765432 23346799999999999999
Q ss_pred eeecCCCeEEEEEeeecCC-----CcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 312 PLLDSSGSLIGVNTFITSG-----AFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 312 Pl~~~~G~viGi~~~~~~~-----~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
||||.+|+||||+++.... ...+++|+||++.+++++++|+++|++.+
T Consensus 179 Plv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~~~ 231 (237)
T 3lgi_A 179 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 231 (237)
T ss_dssp EEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSCCC
T ss_pred HeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999997632 34679999999999999999999999753
|
| >1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=277.85 Aligned_cols=207 Identities=36% Similarity=0.595 Sum_probs=169.9
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecC-------------Cccc-----ccc-cceEEEEEEeCCCEEEecccccCCCCeEE
Q 018198 153 LETIRIFEENISSVVWIGNLGIRED-------------QSET-----EFL-RGSGAGFLWDQDGHIVTNYHVICGASTVK 213 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~-------------~~~~-----~~~-~~~GsGfii~~~g~vlT~~Hvv~~~~~~~ 213 (359)
.++.++++++.||||+|.+...... ++.. ... .+.||||+|+++||||||+||+.+..++.
T Consensus 4 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~~g~ILTnaHvv~~~~~i~ 83 (239)
T 1l1j_A 4 SPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNIT 83 (239)
T ss_dssp CHHHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHSSCSSCE
T ss_pred hhHHHHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEeCCCEEEEChHHhCCCCEEE
Confidence 3578899999999999998754321 1110 112 57899999998899999999999999999
Q ss_pred EEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCc-
Q 018198 214 VSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGR- 292 (359)
Q Consensus 214 v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~- 292 (359)
|.+.+|+.++++++..|+.+||||||++.+...+++++|+++..++.|++++++|||.+...+++.|+|+...+.....
T Consensus 84 V~~~~g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~~~vt~Givs~~~r~~~~~~ 163 (239)
T 1l1j_A 84 VTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPD 163 (239)
T ss_dssp EECTTSCEEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEEEEEECTTSSSCEEEEEEEEEEEEEEECTT
T ss_pred EEECCCCEEEEEEEEEcCCCCEEEEEEcCCCCCCceEEecCccCCccccEEEEEECCCCCCCcEEEEEEeccccccccCC
Confidence 9999999999999999999999999998753458899998777789999999999999988889999999887653211
Q ss_pred ---ccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 293 ---LIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 293 ---~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
.+..++++|+.+++|+|||||+|.+|+||||+++... +...+++|+||++.+++++++|+++|++.|
T Consensus 164 ~~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~v~r 234 (239)
T 1l1j_A 164 GSGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKKVEK 234 (239)
T ss_dssp SSCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC------
T ss_pred CccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCCCCcc
Confidence 1456899999999999999999999999999999874 234589999999999999999999999875
|
| >3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=285.37 Aligned_cols=205 Identities=36% Similarity=0.586 Sum_probs=176.4
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC----------Cccc-------ccccceEEEEEEeCC-CEEEecccccCCCCeEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED----------QSET-------EFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKVS 215 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~----------~~~~-------~~~~~~GsGfii~~~-g~vlT~~Hvv~~~~~~~v~ 215 (359)
++.++++++.||||.|.+...... +|+. ....+.||||+|+++ ||||||+||+.+...+.|.
T Consensus 14 ~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~~~~~i~V~ 93 (345)
T 3stj_A 14 SLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQ 93 (345)
T ss_dssp BSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHTTEEEEEEE
T ss_pred CHHHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEECCCCEEEEChHHhCCCCEEEEE
Confidence 578899999999999998764431 1111 112588999999987 9999999999999999999
Q ss_pred ecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecc-cCCccc
Q 018198 216 FSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLI 294 (359)
Q Consensus 216 ~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~~~~ 294 (359)
+.+++.++++++..|+.+||||||++.+ ..+++++++++..++.|++|+++|||++...+++.|+|+...+. .....+
T Consensus 94 ~~dg~~~~a~vv~~d~~~DlAlLkv~~~-~~~~~~~l~~s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~~~~~~~~~~ 172 (345)
T 3stj_A 94 LNDGREFDAKLIGSDDQSDIALLQIQNP-SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGL 172 (345)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTTBEEEEEECGGGCSCEEEEEEEEEEEECCSSSSSS
T ss_pred eCCCcEEEEEEEEEcCCCCEEEEEEccc-CCCceEeecCcccCCCCCEEEEEECCCCCCCcEEeeEEeeecccccCCCCc
Confidence 9999999999999999999999999764 35889999888889999999999999999999999999999876 333344
Q ss_pred ccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 295 QGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 295 ~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
..++++|+.+++|+|||||||.+|+||||+++... +...+++|+||++.+++++++|+++|++.|
T Consensus 173 ~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~~ 239 (345)
T 3stj_A 173 ENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKR 239 (345)
T ss_dssp CCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHSSCCC
T ss_pred cCEEEEecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcccccc
Confidence 67899999999999999999999999999999873 345689999999999999999999999875
|
| >4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=287.49 Aligned_cols=206 Identities=35% Similarity=0.579 Sum_probs=179.7
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecC----------Cccc-------ccccceEEEEEEeCC-CEEEecccccCCCCeEEE
Q 018198 153 LETIRIFEENISSVVWIGNLGIRED----------QSET-------EFLRGSGAGFLWDQD-GHIVTNYHVICGASTVKV 214 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~----------~~~~-------~~~~~~GsGfii~~~-g~vlT~~Hvv~~~~~~~v 214 (359)
.++.++++++.||||.|.+...... +|+. ....+.||||+|+++ ||||||+||+.++.++.|
T Consensus 13 ~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~~a~~i~V 92 (436)
T 4a8c_A 13 PSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISI 92 (436)
T ss_pred CCHHHHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEECCCCEEEECHHHhCCCCEEEE
Confidence 4688999999999999998765431 1110 123588999999987 999999999999999999
Q ss_pred EecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecc-cCCcc
Q 018198 215 SFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRL 293 (359)
Q Consensus 215 ~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~~~ 293 (359)
.+.+++.+++++++.|+.+||||||++.+. .+++++|+++..++.|++|+++|||++...+++.|+|+...+. .....
T Consensus 93 ~~~dg~~~~a~vv~~d~~~DlAllkv~~~~-~l~~~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~~r~~~~~~~ 171 (436)
T 4a8c_A 93 QLNDGREFDAKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEG 171 (436)
T ss_pred EeCCCCEEEEEEEEEcCCCCEEEEEecCCC-CCceEeccCcccCCCCCEEEEEEcCCCCCccEEEEEEeeecccccCCCC
Confidence 999999999999999999999999997643 5899999888899999999999999999999999999999876 33344
Q ss_pred cccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 294 IQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 294 ~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
+.+++++|+.+++|+|||||||.+|+||||+++... +...+++|+||++.+++++++|+++|++.|
T Consensus 172 ~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r 239 (436)
T 4a8c_A 172 LENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKR 239 (436)
T ss_pred ccCEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhcccccc
Confidence 567899999999999999999999999999999873 345689999999999999999999999865
|
| >3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=262.35 Aligned_cols=203 Identities=33% Similarity=0.480 Sum_probs=168.3
Q ss_pred CCCchhhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE
Q 018198 146 CKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~ 225 (359)
..++.....+.++++++.+|||+|....... +.......+.||||+|+++||||||+||+.+...+.|.+.+++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~sVV~I~~~~~~~-~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~~~~i~V~~~~g~~~~a~ 102 (231)
T 3tjo_A 24 NSLRHKYNFIADVVEKIAPAVVHIELFRKLP-FSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAK 102 (231)
T ss_dssp TSHHHHSCHHHHHHHHHGGGEEEEEEEEECT-TSSCEEEEEEEEEEECSTTCEEEEETTTCCSSSEEEEECTTSCEEEEE
T ss_pred ccccchhhHHHHHHHHhcCcEEEEEEEeccc-cCCCccccceEEEEEEeCCCEEEEchhcccCCceEEEEcCCCCEEEEE
Confidence 3455566788899999999999999876421 111122346899999999899999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC----CcccccEEEEc
Q 018198 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQID 301 (359)
Q Consensus 226 v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~----~~~~~~~i~~~ 301 (359)
++..|+.+|||||+++.+. .++++.|+++..+..|++++++|||.+...+++.|.++...+... ......+++++
T Consensus 103 v~~~d~~~DlAlL~l~~~~-~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~~~~~~~~~~i~~d 181 (231)
T 3tjo_A 103 IKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTD 181 (231)
T ss_dssp EEEEETTTTEEEEECCCSS-CCCCCCBCCGGGCCTTCEEEEEEEEETTEEEEEEEEEEECC-------------CCEEES
T ss_pred EEEecCCCCEEEEEecCCC-CCCceecCCcCCCCCCCEEEEEECCCCCCCceeeEEEeeccccccccccCCCcccEEEEc
Confidence 9999999999999999643 578888877778899999999999998888889999998866432 11223578999
Q ss_pred ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 302 ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 302 ~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
+.+++|+|||||||.+|+||||+++... .+++||||++.++++|+++.+
T Consensus 182 a~i~~G~SGGPLv~~~G~vVGI~s~~~~---~g~~~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 182 AIINYGNAGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIKKFLTESHD 230 (231)
T ss_dssp SCCCTTTTTSEEECTTSCEEEEEEEEEE---TTEEEEEEHHHHHHHHHHHHT
T ss_pred CCcCCCCchhHeecCCCeEEEEEeEEec---CCeEEEEEHHHHHHHHHHHhh
Confidence 9999999999999999999999999763 568999999999999999876
|
| >1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=272.28 Aligned_cols=206 Identities=35% Similarity=0.481 Sum_probs=175.7
Q ss_pred hhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCC
Q 018198 153 LETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQV 232 (359)
Q Consensus 153 ~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~ 232 (359)
.++.++++++.+|||+|.+......+.......+.||||+|+++||||||+||+.+...+.|.+.+|+.++++++.+|+.
T Consensus 9 ~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~~a~v~~~d~~ 88 (318)
T 1te0_A 9 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSL 88 (318)
T ss_dssp CCCHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEETT
T ss_pred ccHHHHHHhcCCcEEEEEeEeccCCcccccccCccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEEEEEEEEeCCC
Confidence 35678899999999999998754332111223578999999998999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC-CcccccEEEEcccCCCCCccc
Q 018198 233 NDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-GRLIQGVIQIDASVNLGNSGG 311 (359)
Q Consensus 233 ~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-~~~~~~~i~~~~~~~~G~SGg 311 (359)
+|||||+++.+ ..+++++|+++..+..|++|+++|||++....++.|+|+...+... ......++++++.+++|+|||
T Consensus 89 ~DlAllk~~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~~~~~~~i~~d~~~~~G~SGG 167 (318)
T 1te0_A 89 TDLAVLIIKAT-GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGG 167 (318)
T ss_dssp TTEEEEECCCS-SCCCCCCCCTTCCCCTTCEEEEECCCSSSSCCEEEEEEEECCCCCCCTTCSCCSEEESSCCCTTTTTS
T ss_pred ceEEEEEEeCC-CCCceEEeeCccCCCCCCEEEEEEcCCCCCCcEEeeEEecccccccCCCCcCCEEEECCCCCCCCCcC
Confidence 99999999875 3578899987678899999999999999888999999998876532 123346799999999999999
Q ss_pred eeecCCCeEEEEEeeecCC-----CcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 312 PLLDSSGSLIGVNTFITSG-----AFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 312 Pl~~~~G~viGi~~~~~~~-----~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
||||.+|+||||+++.... ...+++|+||++.+++++++|+++|++.|
T Consensus 168 Pl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~~~ 220 (318)
T 1te0_A 168 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 220 (318)
T ss_dssp EEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSCCC
T ss_pred ceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcCCccc
Confidence 9999999999999998742 34678999999999999999999998764
|
| >3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=283.35 Aligned_cols=204 Identities=36% Similarity=0.606 Sum_probs=168.3
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC----------------Cccc---------ccccceEEEEEEeCC-CEEEecccccC
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED----------------QSET---------EFLRGSGAGFLWDQD-GHIVTNYHVIC 207 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~----------------~~~~---------~~~~~~GsGfii~~~-g~vlT~~Hvv~ 207 (359)
++.++++++.||||.|.+...... +++. ....+.||||+|+++ ||||||+||+.
T Consensus 20 ~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HVv~ 99 (451)
T 3pv2_A 20 SMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIR 99 (451)
T ss_dssp CSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHHHT
T ss_pred CHHHHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEECCCCEEEEChHHhC
Confidence 578899999999999998753211 1110 123478999999975 99999999999
Q ss_pred CCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEE
Q 018198 208 GASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVI 282 (359)
Q Consensus 208 ~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~v 282 (359)
++.++.|.+.|++.++++++..|+.+||||||++. ..++++.|+++..++.|++|+++|||++.. .+++.|+|
T Consensus 100 ~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~--~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~~~~~~~~vt~Giv 177 (451)
T 3pv2_A 100 NASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177 (451)
T ss_dssp TEEEEEEECTTSCEEECEEEEEETTTTEEEEECCC--SSCCCCCBCCGGGCCTTCEEEEEECCCCC-----CCEEEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEEEecCcCCcEEEEEEcC--cCCceeEecCcccCCCCCEEEEEECCCCccccccCCceeEEEE
Confidence 99999999999999999999999999999999976 358889998878899999999999999987 89999999
Q ss_pred eeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 283 SALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 283 s~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
+...+. .....+..++++|+.+++|+|||||||.+|+||||+++... +...+++||||++.+++++++|+++|++.|
T Consensus 178 s~~~r~~~~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r 257 (451)
T 3pv2_A 178 SALKRSDLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSIHR 257 (451)
T ss_dssp EEEC----------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHSSCCC
T ss_pred eeccccccCCCCcceEEEEecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHhcCCccc
Confidence 999776 33334457899999999999999999999999999998863 345689999999999999999999999875
|
| >4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.65 Aligned_cols=194 Identities=27% Similarity=0.410 Sum_probs=160.4
Q ss_pred CCCeeEEEEeeeeecCCccc----ccccceEEEEEEeCCCEEEecccccCCCCeEEEEec-CCcEEEEEEEEEcCCCCEE
Q 018198 162 NISSVVWIGNLGIREDQSET----EFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS-DQSTFYAQVVGHDQVNDLA 236 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~----~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~-~g~~~~~~v~~~d~~~DlA 236 (359)
..+|||+|.+.....++..+ ....+.||||+|+ +||||||+|||.++..+.|.+. ||+.++|++++.|+..|||
T Consensus 46 ~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~-dG~IlTN~HVV~~a~~i~V~~~~dg~~~~A~vv~~D~~~DLA 124 (539)
T 4fln_A 46 FLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG-DGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIA 124 (539)
T ss_dssp HHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE-TTEEEECGGGGTTEEEEEEECTTCCCCEEEEEEEEETTTTEE
T ss_pred cCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEE-CCEEEEChHHcCCCCeEEEEEccCCEEEEEEEEEECCCCCEE
Confidence 34899999998765444322 3346889999998 6899999999999999999984 8999999999999999999
Q ss_pred EEEEcCCCC--CccceEecCCCCCCCCCEEEEEecCCCCCC-ceeEeEEeeeecccC--CcccccEEEEcccCCCCCccc
Q 018198 237 VLHIDAPNH--ELRPIHVSVSADLRVGKKIYAIGHPLGWSF-TCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGG 311 (359)
Q Consensus 237 ll~v~~~~~--~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~-~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGg 311 (359)
|||++.... ..+++.++ ..++.|++|+++|||++... +++.|+|+++.+... +.....+||+|+++++|+|||
T Consensus 125 vLkv~~~~~~~~~~pl~~g--~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~~~~~~~IQtDAaInpGnSGG 202 (539)
T 4fln_A 125 LLSVESEDFWKGAEPLRLG--HLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGG 202 (539)
T ss_dssp EEEECCSSSSTTCCCCCBC--CCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTSCCEEEEEEESSCCCTTTTTS
T ss_pred EEEEeCCcCCcCCceeecC--CcCcCCCeEEEEEcCCCCCCCcEEeEEECcccccccCCCCcceeEEEEEeEecCCCccc
Confidence 999987542 23455554 45678999999999998754 899999999987654 223335699999999999999
Q ss_pred eeecCCCeEEEEEeeecC-CCcceeEEEEehHHHHHHHHHHHhcCccc
Q 018198 312 PLLDSSGSLIGVNTFITS-GAFSGIGFALPIDTVRGIVDQLVKFSRYC 358 (359)
Q Consensus 312 Pl~~~~G~viGi~~~~~~-~~~~~~~~aip~~~i~~~l~~l~~~g~v~ 358 (359)
||||.+|+||||+++... ....+++||||++.+++++++|+++|++.
T Consensus 203 PLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G~~~ 250 (539)
T 4fln_A 203 PAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGKYT 250 (539)
T ss_dssp EEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTTSCC
T ss_pred hhccCCCcEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHcCeEE
Confidence 999999999999998763 34578999999999999999999999975
|
| >1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=276.07 Aligned_cols=205 Identities=37% Similarity=0.595 Sum_probs=173.7
Q ss_pred hHHHhhhcCCCeeEEEEeeeeec-----------CCcccc-----------------------------cccceEEEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRE-----------DQSETE-----------------------------FLRGSGAGFLW 193 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~-----------~~~~~~-----------------------------~~~~~GsGfii 193 (359)
++.++++++.||||.|.+..... .+|+.. ...+.||||+|
T Consensus 14 ~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ii 93 (448)
T 1ky9_A 14 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII 93 (448)
T ss_dssp CSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEEEE
T ss_pred cHHHHHHHhCCcEEEEEEEEEecccCCccchhhhhhhccccccccccccccccccccccccccccccccccccEEEEEEE
Confidence 57889999999999999875421 111100 11367999999
Q ss_pred eCC-CEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCC
Q 018198 194 DQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLG 272 (359)
Q Consensus 194 ~~~-g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~ 272 (359)
+++ ||||||+||+.++..+.|++.||+.+++++++.|+.+||||||++.+ ..+++++|+++..+++|++|+++|||++
T Consensus 94 ~~~~g~IlTn~HVv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~-~~~~~~~l~~s~~~~~G~~V~aiG~P~g 172 (448)
T 1ky9_A 94 DADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNP-KNLTAIKMADSDALRVGDYTVAIGNPFG 172 (448)
T ss_dssp ETTTTEEEEEHHHHTTEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTTCEEEEEECTTS
T ss_pred ECCCCEEEEChHHhCCCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEecCC-CCCceEEecccccCCCCCEEEEEECCCC
Confidence 987 99999999999999999999999999999999999999999999864 3588999988888999999999999999
Q ss_pred CCCceeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHH
Q 018198 273 WSFTCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 273 ~~~~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~ 349 (359)
...+++.|+|+...+. .....+.+++++|+.+++|+|||||||.+|+||||+++... +...+++|+||++.++++++
T Consensus 173 ~~~tvt~Givs~~~r~~~~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~ 252 (448)
T 1ky9_A 173 LGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTS 252 (448)
T ss_dssp SSCEEEEEEEEEESSCC-----CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHH
T ss_pred CCCeEEeEEEeeccccccCCCCccCEEEEcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccceeeeeecccchhhHH
Confidence 9899999999999776 22233457899999999999999999999999999998763 34468999999999999999
Q ss_pred HHHhcCcccC
Q 018198 350 QLVKFSRYCN 359 (359)
Q Consensus 350 ~l~~~g~v~~ 359 (359)
+|+++|++.|
T Consensus 253 ~l~~~g~v~~ 262 (448)
T 1ky9_A 253 QMVEYGQVKR 262 (448)
T ss_dssp HHHHHSSCCB
T ss_pred HHhhhcccce
Confidence 9999998764
|
| >3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=262.28 Aligned_cols=203 Identities=33% Similarity=0.480 Sum_probs=163.8
Q ss_pred CCCchhhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE
Q 018198 146 CKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~ 225 (359)
.........+.++++++.||||+|...... .+.......+.||||+|+++||||||+||+.+...+.|.+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~sVV~I~~~~~~-~~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~~~~~i~V~~~~g~~~~a~ 85 (332)
T 3num_A 7 NSLRHKYNFIADVVEKIAPAVVHIELFRKL-PFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAK 85 (332)
T ss_dssp SSHHHHHCHHHHHHHHHGGGEEEEEEEEEC-TTSSCEEEEEEEEEEEEETTTEEEECTTTCCTTSEEEEEETTSCEEEEE
T ss_pred CccccccchHHHHHHHhcCcEEEEEEEecc-ccCCCcceeeeEEEEEEeCCCEEEEChHHcCCCCEEEEEECCCCEEEEE
Confidence 344556678899999999999999986532 1222223457899999999899999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC----CcccccEEEEc
Q 018198 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQID 301 (359)
Q Consensus 226 v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~----~~~~~~~i~~~ 301 (359)
++..|+.+|||||+++.+. .++++.++++..+..|++++++|||.+...+++.|.++...+... ......+++++
T Consensus 86 ~~~~d~~~DlAlL~l~~~~-~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~~~~~~~~~~i~~d 164 (332)
T 3num_A 86 IKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTD 164 (332)
T ss_dssp EEEEETTTTEEEEEECCSS-CCCCCCBCCTTSCCTTCEEEEECC-----CCEEEEEEEEC--------------CCEEES
T ss_pred EEEecCCCCeEEEEEcCCC-CCceeeecCcccCCCCCEEEEEECCCCCCcceeeeEEEeecccccccCcCCCcCCEEEEE
Confidence 9999999999999999753 578888887788899999999999999888999999998866432 11223678999
Q ss_pred ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 302 ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 302 ~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
+.+++|+|||||||.+|+||||+++... .+++|+||++.++++++++++
T Consensus 165 ~~i~~G~SGGPlv~~~G~vvGI~s~~~~---~g~~~aip~~~i~~~l~~~~~ 213 (332)
T 3num_A 165 AIINYGNAGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIKKFLTESHD 213 (332)
T ss_dssp SCCCTTTTTSEEEETTSCEEEEEEEEEE---TTEEEEEEHHHHHHHHHHHCC
T ss_pred CCcCCCCcHHHhhCCCCcEEEEEeeEec---ccceEEECHHHHHHHHHHHhh
Confidence 9999999999999999999999999764 568999999999999999853
|
| >1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=262.63 Aligned_cols=197 Identities=38% Similarity=0.604 Sum_probs=167.9
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---------eEEEEecCCcEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---------TVKVSFSDQSTFYA 224 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---------~~~v~~~~g~~~~~ 224 (359)
++.++++++.||||+|...... ..+.||||+|+++||||||+||+.+.. .+.|.+.+++.+++
T Consensus 7 ~~~~~~~~~~~svV~I~~~~~~--------~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~~~~a 78 (324)
T 1y8t_A 7 SVEQVAAKVVPSVVMLETDLGR--------QSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPF 78 (324)
T ss_dssp CHHHHHHHHGGGEEEEEEEC------------CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTCCEECE
T ss_pred cHHHHHHHhcCcEEEEEEEccC--------CCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCCCEEEE
Confidence 5778999999999999875431 235899999998789999999998765 79999999999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC-----C--cccccE
Q 018198 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-----G--RLIQGV 297 (359)
Q Consensus 225 ~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-----~--~~~~~~ 297 (359)
+++.+|+.+|||||+++.+ ..+++++|+++..+..|++++++|||.+...+++.|+|+...+... + .....+
T Consensus 79 ~vv~~d~~~DlAllkl~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~~g~~~~~~~~ 157 (324)
T 1y8t_A 79 TVVGADPTSDIAVVRVQGV-SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDA 157 (324)
T ss_dssp EEEECCTTTTEEEEEECSC-CSCCCCEECCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC-------CCCEEE
T ss_pred EEEEeCCCCCEEEEEECCC-CCCceEEecCcccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccccccCcccccCCE
Confidence 9999999999999999975 3588999987777899999999999999888889999998865432 1 123468
Q ss_pred EEEcccCCCCCccceeecCCCeEEEEEeeecCC---------CcceeEEEEehHHHHHHHHHHHhcCcccC
Q 018198 298 IQIDASVNLGNSGGPLLDSSGSLIGVNTFITSG---------AFSGIGFALPIDTVRGIVDQLVKFSRYCN 359 (359)
Q Consensus 298 i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~---------~~~~~~~aip~~~i~~~l~~l~~~g~v~~ 359 (359)
+++++.+|+|+|||||+|.+|+||||+++.... ...+++|+||++.+++++++|+++|++.+
T Consensus 158 i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~~~~ 228 (324)
T 1y8t_A 158 IQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASH 228 (324)
T ss_dssp EEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSCCCC
T ss_pred EEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999999999999998632 23578999999999999999999998754
|
| >1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=265.66 Aligned_cols=199 Identities=34% Similarity=0.504 Sum_probs=164.2
Q ss_pred hhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEc
Q 018198 151 DELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD 230 (359)
Q Consensus 151 ~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d 230 (359)
....+.++++++.+|||+|...... .+.+.....+.||||+|+++||||||+||+.+...+.|++.+|+.++++++.+|
T Consensus 13 ~~~~~~~~~~~~~~sVV~I~~~~~~-~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~~a~v~~~d 91 (325)
T 1lcy_A 13 QYNFIADVVEKTAPAVVYIEILDRH-PFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVD 91 (325)
T ss_dssp HSCHHHHHHHHHGGGEEEEEEEEEE-TTTTEEEEEEEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEEEE
T ss_pred chhHHHHHHHHhCCcEEEEEEEecC-ccCCCccccccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEEEEEEEEEC
Confidence 3456789999999999999875432 111111234689999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--C--cccccEEEEcccCCC
Q 018198 231 QVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--G--RLIQGVIQIDASVNL 306 (359)
Q Consensus 231 ~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~--~~~~~~i~~~~~~~~ 306 (359)
+.+||||||++.+. .+++++|+++..+..|++++++|||.+...+++.|+|+...+... + .....++++++.+++
T Consensus 92 ~~~DlAllkl~~~~-~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d~~~~~ 170 (325)
T 1lcy_A 92 PVADIATLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDF 170 (325)
T ss_dssp TTTTEEEEECCCSS-CCCCCCBCCGGGCCTTCEEEECCCTTSSSSCCEEEEBCSCSCC---------CCCCEEESSCCST
T ss_pred CCCCEEEEEEcCCC-CCceEEecccccCCCCCEEEEEECCCCCCCcEEeEEEecccccccccCCCCCCCCEEEEcCCCCC
Confidence 99999999998743 578889987667899999999999999888999999998866421 1 123467999999999
Q ss_pred CCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 307 GNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 307 G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
|+|||||||.+|+||||+++... .+++|+||++.++++++++++.
T Consensus 171 G~SGGPl~~~~G~vVGI~s~~~~---~g~~~aip~~~i~~~l~~~~~~ 215 (325)
T 1lcy_A 171 GNAGGPLVNLDGEVIGVNTMKVT---AGISFAIPSDRLREFLHRGEKK 215 (325)
T ss_dssp TTTTSEEEETTSCEEEEEEEEEE---TTEEEEEEHHHHHHHTCC----
T ss_pred CCccccEECCCCEEEEEEeEeec---CCeeEEEEHHHHHHHHHHhhhc
Confidence 99999999999999999999863 4689999999999999998765
|
| >3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=241.52 Aligned_cols=192 Identities=29% Similarity=0.390 Sum_probs=158.9
Q ss_pred HHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCC
Q 018198 155 TIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVND 234 (359)
Q Consensus 155 ~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~D 234 (359)
..++++++.+|||+|........ ..+.||||+|+ +||||||+||+.+...+.|.+.+ ..+.++++..|+.+|
T Consensus 33 ~~~~~~~~~~svV~I~~~~~~~~------~~~~GsG~iI~-~~~VlTaaH~v~~~~~~~V~~~~-~~~~~~~v~~~~~~D 104 (237)
T 3k6y_A 33 NNPVVAATEPSVVKIRSLAPRCQ------KVLEGTGFVIS-PDRVMTNAHVVAGSNNVTVYAGD-KPFEATVVSYDPSVD 104 (237)
T ss_dssp GCHHHHHHGGGEEEEEEEEGGGT------EEEEEEEEEEE-TTEEEECGGGTTTCSEEEEEETT-EEEECEEEEEETTTT
T ss_pred cHHHHHHhcCCEEEEEEEecCCC------cceeEEEEEEE-CCEEEECHHHcCCCceEEEEECC-cEEEEEEEEEcCCCC
Confidence 35688999999999998764321 24589999999 67999999999999999999988 488899999999999
Q ss_pred EEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC----C--c-ccccEEEEcccCCCC
Q 018198 235 LAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----G--R-LIQGVIQIDASVNLG 307 (359)
Q Consensus 235 lAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~----~--~-~~~~~i~~~~~~~~G 307 (359)
|||||++.. .+++++|+ +..+..|+.++++|||.+.......|.++...+... . . ....++++++.+++|
T Consensus 105 iAll~l~~~--~~~~~~l~-~~~~~~G~~v~v~G~p~g~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 181 (237)
T 3k6y_A 105 VAILAVPHL--PPPPLVFA-AEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQG 181 (237)
T ss_dssp EEEEECTTC--CSCCCCBC-SSCCCTTCEEEEEECGGGCSCEEEEEEEEEEEEEEECCTTCCSSCEEEEEEEEESCCCTT
T ss_pred EEEEEeCCC--CCCceecC-CCCCCCCCEEEEEECCCCCCCccceeEEEeeEeecccccccCCCcccccEEEecCccCCC
Confidence 999999843 47888887 677889999999999998888888887766543221 1 1 233578899999999
Q ss_pred CccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcCccc
Q 018198 308 NSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFSRYC 358 (359)
Q Consensus 308 ~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~v~ 358 (359)
+|||||+|.+|+||||+++...+. .+++|+||++.++++++++...+.|.
T Consensus 182 dSGGPLv~~~G~vvGI~s~~~~~~-~~~~~aip~~~v~~~l~~~~~~~~v~ 231 (237)
T 3k6y_A 182 DSGGPLIDLNGQVLGVVFGAAIDD-AETGFVLTAGEVAGQLAKIGATQPVG 231 (237)
T ss_dssp CTTCEEECTTSCEEEEEEEECSSS-TTEEEEEEHHHHHGGGGGTTCCSCCC
T ss_pred ccHHHEECCCCEEEEEEEeeccCC-CcEEEEEEHHHHHHHHHHccCCCCCC
Confidence 999999999999999999986433 57899999999999999997666653
|
| >2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=189.26 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=124.0
Q ss_pred ceEEEEEEeCCCEEEecccccCCCC---eEEEEe----cCCcEEEEE-EEEEcCCCCEEEEEEcCCC-----------CC
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGAS---TVKVSF----SDQSTFYAQ-VVGHDQVNDLAVLHIDAPN-----------HE 246 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~----~~g~~~~~~-v~~~d~~~DlAll~v~~~~-----------~~ 246 (359)
..||||+|++ +|||||+||+.+.. .+.|.+ .+++.+.++ ++.+++.+|||||+++.+. ..
T Consensus 23 ~~c~G~lI~~-~~VLTaaHcv~~~~~~~~i~v~~~~~~~~g~~~~~~~v~~~~~~~DiAll~l~~~~~~~~~~~~~~~~~ 101 (210)
T 2as9_A 23 KDATGFVIGK-NTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNEN 101 (210)
T ss_dssp SSCEEEEEET-TEEEECHHHHHHCCTTCEEEESCCGGGCCSCEEEEEEEEECSSSSSCEEEEECSEEEEEETTEEEGGGS
T ss_pred eeEEEEEEeC-CEEEECHhHCCccCCCCEEEEEeCcccCCCCEEEEEEEEeCCCCCcEEEEEecCccccccccccccccc
Confidence 4799999997 59999999996543 566654 367778874 7788889999999998731 13
Q ss_pred ccceEecCCCCCCCCCEEEEEecCCCCCCc----eeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEE
Q 018198 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFT----CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIG 322 (359)
Q Consensus 247 ~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~----~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viG 322 (359)
++++.|. ..+..|+.++++|||.+.... +..|.++... ...+++++.+|+|+|||||+|.+|+|||
T Consensus 102 v~~i~l~--~~~~~g~~v~v~G~p~~~~~~~~l~~~~g~v~~~~--------~~~i~~~~~~~~GdSGGPlv~~~g~lvG 171 (210)
T 2as9_A 102 VQAFNFA--KDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIK--------DNILNFDAYIEPGNSGSPVLNSNNEVIG 171 (210)
T ss_dssp CCCCCBC--SCCCTTCEEEEEECSSTTTTTSCCEEEEEEEEEEE--------TTEEEEECCCCTTCTTCEEECTTSCEEE
T ss_pred cceeecC--CCCCCCCEEEEEeCCCCCCCCcceEEeeeEEcccc--------CCeEEEcCccCCCCccCcEECCCCeEEE
Confidence 5666774 467899999999999865432 3667777652 2467889999999999999998999999
Q ss_pred EEeeecC-CCcceeEEEEehHHHHHHHHHHHhc
Q 018198 323 VNTFITS-GAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 323 i~~~~~~-~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
|++++.. .+....+|++|.+.+++++++..+.
T Consensus 172 I~s~g~~~~~~~~~~~~~~~~~i~~f~~~~~~~ 204 (210)
T 2as9_A 172 VVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ 204 (210)
T ss_dssp EECCSCCCTTCSSEEEEECCHHHHHHHHTTCCC
T ss_pred EEecccccCCccccccEEEcHHHHHHHHHhhhh
Confidence 9999873 2345678999999999999886553
|
| >2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=175.36 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=104.3
Q ss_pred cceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEE
Q 018198 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKI 264 (359)
Q Consensus 185 ~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v 264 (359)
.+.||||+| +||||||+||+.+...+.|++ +++.++++++ .|+..||||||++.....+++++++++.. .+++
T Consensus 20 ~~~GSGfii--~g~IlTn~HVV~~~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv~~~~~~~~~l~l~~~~~---~~~v 92 (163)
T 2w5e_A 20 EGKGTGFFS--GNDIVTAAHVVGNNTFVNVCY-EGLMYEAKVR-YMPEKDIAFITCPGDLHPTARLKLSKNPD---YSCV 92 (163)
T ss_dssp TEEEEEEEE--TTEEEEEHHHHTTCSEEEEEE-TTEEEEEEEE-ECCSSSEEEEECCTTCCCSCCCCBCSSCC---TTEE
T ss_pred ceeEEEEEE--CCEEEecHHHhCCCceEEEEE-CCEEEEEEEE-EECCCCEEEEEecCCCCCcceEEcCCCCC---CCEE
Confidence 468999999 579999999999999999999 9999999999 89999999999997543455566765432 4899
Q ss_pred EEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEe
Q 018198 265 YAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALP 340 (359)
Q Consensus 265 ~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip 340 (359)
+++|||.+. ..+ +...... ....+.+++.+++|+|||||||.+|+||||++... +..+ +|+|.
T Consensus 93 ~~~G~p~~~-~~~-----s~~~~~~----~g~~~~~~a~i~pGnSGGPl~n~~G~VVGI~~~~~--g~~g-g~ai~ 155 (163)
T 2w5e_A 93 TVMAYVNED-LVV-----STAAAMV----YGNTLSYAVRTQDGMSGAPVCDKYCRVLAVHQTNT--GYTG-GAVII 155 (163)
T ss_dssp EEEEEETTE-EEE-----EEEEEEE----ETTEEEEECSCSSCCTTCEEECTTSCEEEEEEEEE--TTEE-EEEEC
T ss_pred EEEEeCCCC-EEE-----EEeccEE----cCCeEEEEEEeCCCCchhhEEcCCCEEEEEEccCc--cccc-CEEEe
Confidence 999999762 111 1111111 11346778999999999999999999999998764 2234 67775
|
| >1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=181.51 Aligned_cols=158 Identities=23% Similarity=0.368 Sum_probs=117.3
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCe--EEEEecCC-------------cEEEEEEEEEcC---CCCEEEEEEcCCCC--
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGAST--VKVSFSDQ-------------STFYAQVVGHDQ---VNDLAVLHIDAPNH-- 245 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~--~~v~~~~g-------------~~~~~~v~~~d~---~~DlAll~v~~~~~-- 245 (359)
..|+||+|++ +||||||||+.+... +.|.+.+| ..+.++.+..++ .+|||||+++.+..
T Consensus 55 ~~c~G~lI~~-~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~~~~~~~ 133 (242)
T 1agj_A 55 TSATGVLIGK-NTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGV 133 (242)
T ss_dssp EEEEEEECSS-SEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECCCTTSC
T ss_pred ccEEEEEEeC-CEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEcCCCccc
Confidence 4799999996 599999999976432 34554333 246778888787 89999999997642
Q ss_pred ----CccceEecCCCCCCCCCEEEEEecCCCCCCc-eeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeE
Q 018198 246 ----ELRPIHVSVSADLRVGKKIYAIGHPLGWSFT-CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSL 320 (359)
Q Consensus 246 ----~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~-~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~v 320 (359)
.+++++|+....+..|+.++++|||.+.... +....+.... ....+++++.+|+|+|||||++.+|+|
T Consensus 134 ~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~c~GdSGGPl~~~~g~l 206 (242)
T 1agj_A 134 SLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELTT-------LSRGLRYYGFTVPGNSGSGIFNSNGEL 206 (242)
T ss_dssp CHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEEECC-------GGGSEEEECCCCGGGTTCEEECTTSEE
T ss_pred cccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeeeEec-------CCceEEEeCCcCCCCCchHhcccCCEE
Confidence 3788889765667899999999999865432 3333332221 112367788999999999999989999
Q ss_pred EEEEeeecCC--CcceeEEEEehH-HHHHHHHHH
Q 018198 321 IGVNTFITSG--AFSGIGFALPID-TVRGIVDQL 351 (359)
Q Consensus 321 iGi~~~~~~~--~~~~~~~aip~~-~i~~~l~~l 351 (359)
|||++++... ...+.+|++|+. .+++++++.
T Consensus 207 vGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 207 VGIHSSKVSHLDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp EEEEEEEEECSSTTCEEEEEEECCHHHHHHHHHH
T ss_pred EEEEeccccccCcCCCceeeEEehHHHHHHHHhh
Confidence 9999998631 235789999985 888888764
|
| >2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=174.39 Aligned_cols=155 Identities=23% Similarity=0.354 Sum_probs=112.8
Q ss_pred eEEEEEEeCCCEEEecccccCCCC----eEEEEe----cCCcEEEE-EEEEEcCCCCEEEEEEcCCC-------CCccce
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS----TVKVSF----SDQSTFYA-QVVGHDQVNDLAVLHIDAPN-------HELRPI 250 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~----~~g~~~~~-~v~~~d~~~DlAll~v~~~~-------~~~~~~ 250 (359)
.|+||+|++ +|||||+||+.+.. .+.+.+ .+++.+.+ +++.+++.+|||||+++.+. ..++++
T Consensus 23 ~c~G~lI~~-~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~v~pi 101 (200)
T 2w7s_A 23 GGTGVVVGK-NTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVSYT 101 (200)
T ss_dssp TEEEEEEET-TEEEECHHHHHHHHHTTCCEEETCCSSSCCCCEECEEEEEECSSSSSCEEEEECSBCTTSCBGGGSCCCC
T ss_pred eEEEEEEEC-CEEEEChhhcCCcccCCcEEEEEecCccCCCcEEEEEEEecCCCcceEEEEEECCCCCCcccccccccce
Confidence 699999996 59999999996543 355543 45667776 57778889999999998742 135667
Q ss_pred EecCCCCCCCCCEEEEEecCCCCCC----ceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEee
Q 018198 251 HVSVSADLRVGKKIYAIGHPLGWSF----TCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTF 326 (359)
Q Consensus 251 ~l~~~~~~~~G~~v~~iG~p~~~~~----~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~ 326 (359)
+|. ..+..|+.++++|||.+... .+..|.++... ..++++++.+|+|+|||||++.+|++|||+++
T Consensus 102 ~l~--~~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~~~~--------~~~~~~~~~~~~GdSGGPl~~~~g~lvGI~s~ 171 (200)
T 2w7s_A 102 KFA--DGAKVKDRISVIGYPKGAQTKYKMFESTGTINHIS--------GTFMEFDAYAQPGNSGSPVLNSKHELIGILYA 171 (200)
T ss_dssp CBC--CCCCTTCEEEEEECTTHHHHTSCEEEEEEEEEEEE--------TTEEEECSCCCTTCTTCEEECTTSCEEEEEEE
T ss_pred ecc--ccCCCCCEEEEEECCCCCCCccceEEeEEEEEccC--------CCEEEEcceeCCCCccCeEECcCCEEEEEEec
Confidence 774 45678999999999975322 23567776542 24578899999999999999989999999999
Q ss_pred ecCCCcceeEEEE-ehHHHHHHHHHHH
Q 018198 327 ITSGAFSGIGFAL-PIDTVRGIVDQLV 352 (359)
Q Consensus 327 ~~~~~~~~~~~ai-p~~~i~~~l~~l~ 352 (359)
+...+....+|++ +...+++|+++.+
T Consensus 172 g~~~~~~~~~~~v~~~~~~~~wI~~~~ 198 (200)
T 2w7s_A 172 GSGKDESEKNFGVYFTPQLKEFIQNNI 198 (200)
T ss_dssp EC----CCCEEEEECCHHHHHHHHHTS
T ss_pred cccCCCCccceeeecHHHHHHHHHhhc
Confidence 8643212345566 4577777777644
|
| >2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=173.65 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=128.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEec--------CCcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFS--------DQSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~--------~g~~~~~~v~~~ 229 (359)
..+++|+|...... ....|+||+|+++ ||||||||+.+.. .+.|++. ++.....+++..
T Consensus 18 P~~~~v~i~~~~~~--------~~~~C~G~lI~~~-~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~ 88 (274)
T 2o8l_A 18 HYAPVTYIQVEAPT--------GTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKY 88 (274)
T ss_dssp GGTTEEEEEEEETT--------EEEEEEEEEEETT-EEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEEC
T ss_pred CcceEEEEEEEcCC--------CCEEEEEEEEECC-EEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEEeC
Confidence 35677777653211 1247999999976 9999999996644 3777642 344445566777
Q ss_pred cCCCCEEEEEEcCCC------CCccceEecCCCCCCCCCEEEEEecCCCCCCc---eeEeEEeeeecccCCcccccEEEE
Q 018198 230 DQVNDLAVLHIDAPN------HELRPIHVSVSADLRVGKKIYAIGHPLGWSFT---CTTGVISALDREIPGRLIQGVIQI 300 (359)
Q Consensus 230 d~~~DlAll~v~~~~------~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~---~~~G~vs~~~~~~~~~~~~~~i~~ 300 (359)
+..+||||||++.+. ..++++.|.....+..|+.++++|||.+.... ...|.++... ..+++.
T Consensus 89 ~~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~--------~~~i~~ 160 (274)
T 2o8l_A 89 SGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLK--------GEAMQY 160 (274)
T ss_dssp SSSSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEE--------TTEEEE
T ss_pred CCCCcEEEEEecCcccccccccccccccccccccccCCCEEEEEECCCCCCCceEEecCceEEecC--------CCeEEe
Confidence 788999999998753 35788899765567899999999999765332 3456665432 246788
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcCcc
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFSRY 357 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~v 357 (359)
++.+|+|+||||||+.+|+||||++++.... .+..+++. ..++.|+++.++.-.+
T Consensus 161 ~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~-~~~~~~~~-~~~~~wI~~~i~~~~~ 215 (274)
T 2o8l_A 161 DLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE-FNGAVFIN-ENVRNFLKQNIEDINF 215 (274)
T ss_dssp SCCCCTTCTTCEEECTTSCEEEEEEEEETTT-EEEEEECC-HHHHHHHHHHCTTCEE
T ss_pred CcccCCCCchhheeccCCeEEEEEeCcccCC-CCceEEec-HHHHHHHHHHHhhhcc
Confidence 9999999999999988999999999986433 34566664 6778888877665443
|
| >1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=171.86 Aligned_cols=177 Identities=21% Similarity=0.253 Sum_probs=127.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEec--------CCcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFS--------DQSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~--------~g~~~~~~v~~~ 229 (359)
..+++|+|...... ....|+||+|+++ ||||||||+.+.. .+.|++. ++.....+++..
T Consensus 18 P~~~~v~l~~~~~~--------g~~~CgG~lI~~~-~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~ 88 (268)
T 1wcz_A 18 HYAPVTYIQVEAPT--------GTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKY 88 (268)
T ss_dssp GGTTEEEEEEEC-C--------CEEEEEEEECSSS-EEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEEC
T ss_pred CccEEEEEEEEcCC--------CCEEEEEEEEECC-EEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecC
Confidence 44567777653211 1247999999976 9999999997543 3777653 344444566677
Q ss_pred cCCCCEEEEEEcCCC------CCccceEecCCCCCCCCCEEEEEecCCCCCC---ceeEeEEeeeecccCCcccccEEEE
Q 018198 230 DQVNDLAVLHIDAPN------HELRPIHVSVSADLRVGKKIYAIGHPLGWSF---TCTTGVISALDREIPGRLIQGVIQI 300 (359)
Q Consensus 230 d~~~DlAll~v~~~~------~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~---~~~~G~vs~~~~~~~~~~~~~~i~~ 300 (359)
+..+||||||++.+. ..++++.|.....+..|+.++++|||.+... ....|.++... ..+++.
T Consensus 89 ~~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~--------~~~i~~ 160 (268)
T 1wcz_A 89 SGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLK--------GEAMQY 160 (268)
T ss_dssp SSSSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEE--------TTEEEE
T ss_pred CCCCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEEeeC--------CCeEEE
Confidence 788999999999763 1467788865556788999999999976432 23456665432 246788
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcCcc
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFSRY 357 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~v 357 (359)
++.+|+|+|||||++.+|+||||++++.... .+..+++. ..++.++++.++.-++
T Consensus 161 ~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~-~~~~~~~~-~~~~~wI~~~i~~~~~ 215 (268)
T 1wcz_A 161 DLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE-FNGAVFIN-ENVRNFLKQNIEDINF 215 (268)
T ss_dssp SBCCCTTCTTCEEECTTSCEEEEEEEEETTT-EEEEEECC-HHHHHHHHHHCTTCCB
T ss_pred ecccCCCCccCeEEccCCEEEEEEeCCccCC-cceeEEcC-HHHHHHHHHHHHhccc
Confidence 9999999999999988999999999986433 34566775 6788888877665433
|
| >2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=163.30 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=122.1
Q ss_pred eEEEEEEeCC--CEEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcCCCCCccce-------EecCCC
Q 018198 187 SGAGFLWDQD--GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDAPNHELRPI-------HVSVSA 256 (359)
Q Consensus 187 ~GsGfii~~~--g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~~~~~~~~~-------~l~~~~ 256 (359)
..+||++.++ +|||||+||+.+...+. .+ ..+.++++..+ +..|+||||++.+....+.+ .+....
T Consensus 17 CT~Gf~v~~~~~~~ilTa~Hc~~~~~~v~---~~-~~~~g~vv~~~~~~~D~Avi~i~~~~~~~~~v~~~g~~~~v~g~~ 92 (198)
T 2h5c_A 17 CSVGFSVTRGATKGFVTAGHCGTVNATAR---IG-GAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGST 92 (198)
T ss_dssp EECCEEEEETTEEEEEECGGGCCTTCEEE---ET-TEEEEEEEEEECSBSCEEEEEECTTSEEEEEEEETTEEEECCBCC
T ss_pred CCcCEEEecCCeeEEEECcccCCCCCEEE---eC-CcEEEEEEecCCCCCCEEEEEeCCCCccCceEecCCceEEecCcc
Confidence 5689999753 69999999999887776 45 47889999999 99999999998743212222 344567
Q ss_pred CCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec-CC---
Q 018198 257 DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT-SG--- 330 (359)
Q Consensus 257 ~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~-~~--- 330 (359)
.+++|++|+.+|+|.+ ++.|+|+.+++... ...+.+++++++.+.+|||||||+|.+|++|||+++.. ..
T Consensus 93 ~~~vG~~V~~~G~~tg----~t~G~V~~~~~~~~~~~g~~~~~i~t~~~~~~GDSGGPl~~~~g~~vGI~s~~~~~~~~~ 168 (198)
T 2h5c_A 93 EAAVGAAVCRSGRTTG----YQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGN 168 (198)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEECSCCBTTCTTCEEECTTCBEEEEEEEECCCTTSB
T ss_pred cCCCCCeEEEeecCcc----eEEEEEEeeeeEEEeCCCeEeeeEEecccCCCCcceeEEEeeCCEEEEEEEeecCccCCC
Confidence 8899999999999876 78999999887542 22245689999999999999999998999999999984 21
Q ss_pred -----CcceeEEEEehHHHHHHH
Q 018198 331 -----AFSGIGFALPIDTVRGIV 348 (359)
Q Consensus 331 -----~~~~~~~aip~~~i~~~l 348 (359)
...+.+|++|++.+++.+
T Consensus 169 ~c~~~~~~g~~f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 169 NCGIPASQRSSLFERLQPILSQY 191 (198)
T ss_dssp STTSCGGGCCEEEEEHHHHHHHH
T ss_pred ccccccCCceEEEEEHHHHHHHC
Confidence 224689999999988765
|
| >2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=164.02 Aligned_cols=155 Identities=19% Similarity=0.352 Sum_probs=112.2
Q ss_pred eEEEEEEeCCCEEEecccccCCCC---eEEEEe----cCCcEEE-EEEEEEcCCCCEEEEEEcCCCC-----------Cc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS---TVKVSF----SDQSTFY-AQVVGHDQVNDLAVLHIDAPNH-----------EL 247 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~----~~g~~~~-~~v~~~d~~~DlAll~v~~~~~-----------~~ 247 (359)
.|+||+|+++ ||||||||+.+.. .+.+.. .++..+. .+++.++..+|||||+++.+.. .+
T Consensus 23 ~c~G~lI~~~-~VLTaaHcv~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~~~~~v 101 (204)
T 2vid_A 23 SATGFVVGKN-TILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNV 101 (204)
T ss_dssp SCEEEEEETT-EEEECHHHHTTCCTTCEEEESCCSSSCCSCEEEEEEEEECSSSSCCEEEEECSEEEEEETTEEEHHHHC
T ss_pred eEEEEEEECC-EEEEChhHCCCccCCceEEEEeccccCCCcEEEeeEEecCCCCCeEEEEEEcCcccccccccccccccc
Confidence 6999999986 9999999997654 455532 3455666 4666777889999999986320 23
Q ss_pred cceEecCCCCCCCCCEEEEEecCCCCCC----ceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEE
Q 018198 248 RPIHVSVSADLRVGKKIYAIGHPLGWSF----TCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGV 323 (359)
Q Consensus 248 ~~~~l~~~~~~~~G~~v~~iG~p~~~~~----~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi 323 (359)
+++.|.. .+..|+.++++|||.+... ....|.++... ...++.+..+|+|+|||||++.+|+|+||
T Consensus 102 ~pi~l~~--~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~~~~--------~~~~~~~~~~~~GdSGGPl~~~~g~lvGI 171 (204)
T 2vid_A 102 TPFKYAA--GAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVE--------GSSIVYSAHTESGNSGSPVLNSNNELVGI 171 (204)
T ss_dssp CCCCBCS--CCCTTCEEEEEECCCCCC--CCCEEEEEEEEEEE--------TTEEEECCCCCGGGTTCEEECTTSCEEEE
T ss_pred cccccCC--cCCCCCEEEEEeCCCCCCCCcceEeeccEEeecc--------CCeEEEecccCCCCccCcEECCCCeEEEE
Confidence 5666743 5678999999999986443 34556666542 24678899999999999999989999999
Q ss_pred EeeecCC-CcceeEEEE-ehHHHHHHHHHHH
Q 018198 324 NTFITSG-AFSGIGFAL-PIDTVRGIVDQLV 352 (359)
Q Consensus 324 ~~~~~~~-~~~~~~~ai-p~~~i~~~l~~l~ 352 (359)
++++... .....+|++ +...+++++++.+
T Consensus 172 ~s~g~~~~~~~~~~~~~~~~~~~~~wI~~~~ 202 (204)
T 2vid_A 172 HFASDVKNDDNRNAYGVYFTPEIKKFIAENI 202 (204)
T ss_dssp EEEECC---CCCCEEEECCCHHHHHHHHHHS
T ss_pred EecCccCCCcccccceeEeCHHHHHHHHhhc
Confidence 9998631 223345555 4477888887754
|
| >2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=152.41 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=114.4
Q ss_pred ceEE-EEEEeC--CCEEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcC-CCC---CccceEecCCCC
Q 018198 186 GSGA-GFLWDQ--DGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDA-PNH---ELRPIHVSVSAD 257 (359)
Q Consensus 186 ~~Gs-Gfii~~--~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~-~~~---~~~~~~l~~~~~ 257 (359)
..|| ||++.. ++|||||+||+.+...+.+...++..+ +++...+ +.+||||||++. +.. .++++++.....
T Consensus 12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~~~~~~v~~~~~~~~-g~~~~~~~~~~DiAll~l~~~~~~~~~~v~~~~l~~~~~ 90 (185)
T 2qa9_E 12 GRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVL-GTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAAN 90 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTTCSEEESSTTSCSEE-EEEEEEECSBSCEEEEEECCSSSCCCCEETTEECCEECC
T ss_pred CcEeccEEEEECCceEEEECcccCCCCCcEEecCCCceEe-EEEeccccCCCCEEEEEecCCCccccCccceeeeCCccc
Confidence 3566 999974 369999999999988877765444443 4556666 889999999987 321 345667754466
Q ss_pred CCCCCEEEEEecCCCCCCceeEeEEeeeecccC---CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CCcc
Q 018198 258 LRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GAFS 333 (359)
Q Consensus 258 ~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~---~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~~~ 333 (359)
+..|+.++++||+.+ .+.|.+........ ...+...++.+...|+|||||||++. ++++||++++.. ....
T Consensus 91 ~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v~~~~~~~~~~~~~~~~cac~GDSGGPlv~~-~~~vGI~s~g~~~~~~~ 165 (185)
T 2qa9_E 91 ATVGMAVTRRGSTTG----THSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYSG-TRAIGLTSGGSGNCSSG 165 (185)
T ss_dssp CCTTCEEEEEETTTE----EEEEEEEEEEEEEECSTTCEEEEEEEESCCCCTTCTTCEEEET-TEEEEEEEEEEEETTTE
T ss_pred CCCCCEEEEecCCCc----eeEeEEEEEEEEEEcCCCCEEeceEEecccCCCCCccceEEEC-CEEEEEEEecCCCCCCC
Confidence 789999999999754 45666665543221 11123456777888999999999976 499999999863 2234
Q ss_pred eeEEEEehHHHHHHHH
Q 018198 334 GIGFALPIDTVRGIVD 349 (359)
Q Consensus 334 ~~~~aip~~~i~~~l~ 349 (359)
..+++.|++.++++++
T Consensus 166 ~p~vyt~v~~~~~wI~ 181 (185)
T 2qa9_E 166 GTTFFQPVTEALSAYG 181 (185)
T ss_dssp EEEEEEEHHHHHHHHT
T ss_pred CcEEEEEHHHHHHhhC
Confidence 5789999999988875
|
| >1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-20 Score=166.08 Aligned_cols=132 Identities=24% Similarity=0.362 Sum_probs=98.4
Q ss_pred ceEEEEEEeCCCEEEecccccCCCC----eEEEEecC------------CcEEEEEEEEEcC---CCCEEEEEEcCCCC-
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFSD------------QSTFYAQVVGHDQ---VNDLAVLHIDAPNH- 245 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~~------------g~~~~~~v~~~d~---~~DlAll~v~~~~~- 245 (359)
..|+||+|+++ |||||+||+.+.. .+.+.... ...+.++.+..++ .+|||||+++.+..
T Consensus 48 ~~c~G~lI~~~-~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~~~~ 126 (246)
T 1qtf_A 48 TLATGVLIGKN-TIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKG 126 (246)
T ss_dssp EEEEEEEEETT-EEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCCTTS
T ss_pred ceEEEEEEECC-EEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCCccc
Confidence 47999999975 9999999997643 35555431 1367788888888 89999999997641
Q ss_pred -----CccceEecCCCCCCCCCEEEEEecCCCCCCc-eeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCe
Q 018198 246 -----ELRPIHVSVSADLRVGKKIYAIGHPLGWSFT-CTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGS 319 (359)
Q Consensus 246 -----~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~-~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~ 319 (359)
.++++.|+....+..|+.++++|||.+.... .....+.... .++++..+|+|+|||||+|.+|+
T Consensus 127 ~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~~~~----------~~~~~~~~~~GdSGGPlv~~~g~ 196 (246)
T 1qtf_A 127 ESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEMFN----------DSQYFGYTEVGNSGSGIFNLKGE 196 (246)
T ss_dssp CCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEEESS----------SSBEESCCCGGGTTCEEECTTCC
T ss_pred cccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeeeecC----------cEEEeCCCCCCCchhheECCCCE
Confidence 3678888766667899999999999875432 1121121110 12345678999999999998999
Q ss_pred EEEEEeeec
Q 018198 320 LIGVNTFIT 328 (359)
Q Consensus 320 viGi~~~~~ 328 (359)
||||++++.
T Consensus 197 lvGI~s~g~ 205 (246)
T 1qtf_A 197 LIGIHSGKG 205 (246)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 999999975
|
| >2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=150.30 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=117.6
Q ss_pred eEEEEEEeC-CC--EEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcCCCCCccc---------eEec
Q 018198 187 SGAGFLWDQ-DG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDAPNHELRP---------IHVS 253 (359)
Q Consensus 187 ~GsGfii~~-~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~~~~~~~~---------~~l~ 253 (359)
..+||++.+ +| |||||+||+.+...+ .+.| +.++++..| +..|+||||++.+....+. +++.
T Consensus 15 CTsGf~v~~~~G~~~ilTa~Hc~~~g~~v--~~~d---~~g~v~~~~~p~~DiAlikl~~~~~~~~~v~~~g~~~~~~l~ 89 (188)
T 2oua_A 15 CSVGFAATNASGQPGFVTAGHCGSVGTQV--SIGN---GRGVFERSVFPGNDAAFVRGTSNFTLTNLVSRYNSGGYATVS 89 (188)
T ss_dssp EECCEEEECTTCCEEEEECGGGCCTTCEE--EETT---EEEEEEEEECSBSCEEEEEEEESCEEEEEEECGGGCSEEECC
T ss_pred EecCEEEEeCCCCEEEEECcccCCCCCEE--EecC---ceEEEEeeCCCCCCEEEEEeCCCCccccceeecCCcceEecc
Confidence 678999964 78 999999999766554 3445 788999998 9999999999864321221 3466
Q ss_pred CCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-C
Q 018198 254 VSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-G 330 (359)
Q Consensus 254 ~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~ 330 (359)
.+..+++|++++.+|+|.+ ++.|+|+.+++... ...+.++++++....+|||||||+ .+|+++||+++... .
T Consensus 90 ~~~~~~vG~~v~~~G~~tG----~t~G~v~~~~~~v~~~~~~~~~~~~~~~~~~~GDSGgpl~-~~~~~vGi~s~~~~~~ 164 (188)
T 2oua_A 90 GSSTAPIGSQVCRSGSTTG----WYCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGGSFI-SGTQAQGVTSGGSGNC 164 (188)
T ss_dssp BCCCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEE-ETTEEEEEEEEEEEET
T ss_pred CccCCCCCCeEEEEEcCCC----eEEEEEEEEeeEEEeCCCcEeeeEeeeeecCCCCccceEE-ECCEEEEEEeccCCCC
Confidence 6678899999999999876 68899998876542 112345678888888999999999 58999999999753 2
Q ss_pred CcceeEEEEehHHHHHHH
Q 018198 331 AFSGIGFALPIDTVRGIV 348 (359)
Q Consensus 331 ~~~~~~~aip~~~i~~~l 348 (359)
...+.+|++|++.+++.+
T Consensus 165 ~~~~~~~~~pi~~~l~~~ 182 (188)
T 2oua_A 165 RTGGTTFYQEVNPMLNSW 182 (188)
T ss_dssp TTEEEEEEEESHHHHHHT
T ss_pred CCCCceEEEEHHHHHHHc
Confidence 335689999999887654
|
| >1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=150.71 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=116.0
Q ss_pred eEEEEEEeCC--CEEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcCCCCCccceE--------ecCC
Q 018198 187 SGAGFLWDQD--GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDAPNHELRPIH--------VSVS 255 (359)
Q Consensus 187 ~GsGfii~~~--g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~~~~~~~~~~--------l~~~ 255 (359)
..+||++.++ +|||||+||+.+..++. ..++....+++...+ +..|+||||++.+....+.+. +..+
T Consensus 14 CT~Gfiv~~~g~~~ilT~~Hv~~~~~~v~--~~~~~~~~g~~~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~ 91 (187)
T 1hpg_A 14 CSAAFNVTKGGARYFVTAGHCTNISANWS--ASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNGSTQDISSA 91 (187)
T ss_dssp EECCEEEEETTEEEEEECHHHHTTCSEEE--SSTTCCEEEEEEEEECSBSCEEEEEECSSCCCCSEEECSSSCEEECCEE
T ss_pred CcceEEEEECCeeEEEECcccCCCCCeEE--eCCCceeEEEEeCccCCCCCEEEEEeCCCCCcCceEEecCCceeeeccc
Confidence 4559999875 49999999999887654 455554445655555 788999999987432223333 3345
Q ss_pred CCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCC-Cc
Q 018198 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSG-AF 332 (359)
Q Consensus 256 ~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~-~~ 332 (359)
..+++|++|+.+|+|.+ ++.|+|+.+++... .....+++++++.+++|||||||++. ++++||+++.... ..
T Consensus 92 ~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v~~~~~~~~~~i~t~~~~~~GdSGgpl~~~-~~~vGi~s~~~~~~~~ 166 (187)
T 1hpg_A 92 ANAVVGQAIKKSGSTTK----VTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAG-SVALGIHSGSSGCSGT 166 (187)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEECCCCCTTCTTCEEEET-TEEEEEEEEESCCBTT
T ss_pred cCCCCCCEEEEEEcCCC----EeEEEEEEeEEEEEeCCCeEeeeEEeccccCCCCCCCeEEEC-CEEEEEEEeeCCCCCC
Confidence 67899999999999875 68899998876542 22345689999999999999999976 5999999998631 22
Q ss_pred ceeEEEEehHHHHHHH
Q 018198 333 SGIGFALPIDTVRGIV 348 (359)
Q Consensus 333 ~~~~~aip~~~i~~~l 348 (359)
.+.+|++|++.+++.|
T Consensus 167 ~~~~~~~~i~~~~~~l 182 (187)
T 1hpg_A 167 AGSAIHQPVTEALSAY 182 (187)
T ss_dssp BCCCEEEEHHHHHHHH
T ss_pred CCceEEEEHHHHHHHc
Confidence 4679999999888765
|
| >2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-18 Score=145.00 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=113.4
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcCCCCCcc--------ceEecCCCC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDAPNHELR--------PIHVSVSAD 257 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~~~~~~~--------~~~l~~~~~ 257 (359)
.-+||+++. +||||+||+.+...+. +.| ++++..| +..|+||||++.+....+ ++++..+..
T Consensus 17 CT~Gf~~~~--~ilTa~Hc~~~~~~v~--~~d-----g~v~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~~ 87 (189)
T 2ea3_A 17 CSIGFAVNG--GFITAGHCGRTGATTA--NPT-----GTFAGSSFPGNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTA 87 (189)
T ss_dssp EECCEEETT--EEEECGGGCCTTCEEE--TTT-----EEEEEEECSBSCEEEEEECTTCEEEEEEECSSSCEEECCBCCC
T ss_pred CccCEEccC--eEEEchhcCCCCCEEE--eCC-----cEEEeeCCCCCCEEEEEECCCCccccceEecCCceeecCCCcC
Confidence 557888873 9999999998877643 444 6778888 899999999987532122 334666677
Q ss_pred CCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CCcce
Q 018198 258 LRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GAFSG 334 (359)
Q Consensus 258 ~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~~~~ 334 (359)
+++|+.++.+|++.+ ++.|+|+.+++... ...+.++++++..+.+|||||||++ +|+++||+++... ....+
T Consensus 88 ~~vG~~v~~~G~~tG----~t~G~Vs~~~~~v~~~~~~~~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~~~c~~~~ 162 (189)
T 2ea3_A 88 APVGSAVCRSGSTTG----WHCGTITALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGG 162 (189)
T ss_dssp CCTTCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTTEE
T ss_pred CCCCCEEEEEEeCCc----cEEEEEEecceEEEeCCccCcceEEeeeeccCCCccCeEEE-CCEEEEEEeecCCCCCCCC
Confidence 899999999999876 67899988876542 1123356788888889999999995 8999999999753 22346
Q ss_pred eEEEEehHHHHHHH
Q 018198 335 IGFALPIDTVRGIV 348 (359)
Q Consensus 335 ~~~aip~~~i~~~l 348 (359)
.+|++|++.+++.+
T Consensus 163 ~~~~~pi~~~l~~~ 176 (189)
T 2ea3_A 163 TTFFQPVNPILQAY 176 (189)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred cEEEEEHHHHHHHC
Confidence 89999999888766
|
| >2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=145.20 Aligned_cols=150 Identities=22% Similarity=0.290 Sum_probs=113.8
Q ss_pred eEEEEEEeC--CCEEEecccccCCCCeEEEEecCCcEEEEEEEEEc-CCCCEEEEEEcCCCCCcc--------ceEecCC
Q 018198 187 SGAGFLWDQ--DGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHD-QVNDLAVLHIDAPNHELR--------PIHVSVS 255 (359)
Q Consensus 187 ~GsGfii~~--~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d-~~~DlAll~v~~~~~~~~--------~~~l~~~ 255 (359)
.-+||++.+ ++|+|||+||+.+...+.+ ..++++..+ +..|+||||++.+....+ ++++..+
T Consensus 16 CT~Gf~v~~~~~~~ilTa~Hc~~~g~~v~~-------~~g~v~~~~~~~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~ 88 (186)
T 2pfe_A 16 CSIGFSVRQGSQTGFATAGHCGSTGTRVSS-------PSGTVAGSYFPGRDMGWVRITSADTVTPLVNRYNGGTVTVTGS 88 (186)
T ss_dssp EECCEEEEETTEEEEEECGGGCCTTCEEBT-------TTEEEEEEECSBSCEEEEEECTTSEEEEEEECSSSCEEECCBC
T ss_pred EEeeEEEEcCCeeEEEEChhhCCCCCEEEE-------eeEEEEecCCCCCCEEEEEeCCCcccccceeccCCceEecCCC
Confidence 346999964 4699999999988776664 446777776 899999999987532122 2345556
Q ss_pred CCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CCc
Q 018198 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP--GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GAF 332 (359)
Q Consensus 256 ~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~--~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~~ 332 (359)
..+++|++++.+|++.+ ++.|+|+.+++... ...+.+.++++....+|||||||++ +|+++||+++... ...
T Consensus 89 ~~~~vG~~vc~~G~~tG----~t~G~vs~~~~tv~~~~~~~~~~~~~~~c~~~GDSGgpl~~-~~~~vGi~s~g~~~c~~ 163 (186)
T 2pfe_A 89 QEAATGSSVCRSGATTG----WRCGTIQSKNQTVRYAEGTVTGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRS 163 (186)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTT
T ss_pred CCCCCCCeEEEEEeCCc----eEEEEEEEEeeeEEeCCceEeceEeccEEecCCCccCeEEE-CCEEEEEEeecCCCCCC
Confidence 77899999999999876 78899988877642 2223456777777889999999995 8899999999753 223
Q ss_pred ceeEEEEehHHHHHHH
Q 018198 333 SGIGFALPIDTVRGIV 348 (359)
Q Consensus 333 ~~~~~aip~~~i~~~l 348 (359)
.+.+|++|++.+++.+
T Consensus 164 ~~~~~~~pi~~~l~~~ 179 (186)
T 2pfe_A 164 GGITFFQPINPLLSYF 179 (186)
T ss_dssp EEEEEEEEHHHHHHHH
T ss_pred CCcEEEEEHHHHHHHC
Confidence 4689999998887765
|
| >2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=140.99 Aligned_cols=150 Identities=18% Similarity=0.288 Sum_probs=103.3
Q ss_pred eEE-EEEEeC--CCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCC---Cccce-----EecCC
Q 018198 187 SGA-GFLWDQ--DGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH---ELRPI-----HVSVS 255 (359)
Q Consensus 187 ~Gs-Gfii~~--~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~---~~~~~-----~l~~~ 255 (359)
.|| ||+|.+ ++|||||+||+.+...+.+-..+ ....+.+|+||||++.+.. .+.++ .+...
T Consensus 13 ~ct~G~~v~~~~~~~vlTaaHc~~~~~~~~~G~~~--------~~~~~~~DiAlikl~~~~~~~~~v~~i~~~~~~~~~~ 84 (181)
T 2sga_A 13 RCSLGFNVSVNGVAHALTAGHCTNISASWSIGTRT--------GTSFPNNDYGIIRHSNPAAADGRVYLYNGSYQDITTA 84 (181)
T ss_dssp EEECCEEEEETTEEEEEECHHHHTTCSEETTEEEE--------EEECSBSCEEEEEESCGGGCCCEEECSSSCEEECCEE
T ss_pred cEeccEEEEECCceEEEECcccCCCCCceeeccee--------CCcCCCCCEEEEEccCCCcccceEEecCCcceeeccc
Confidence 566 999974 35999999999876554222211 1223678999999986321 12222 22234
Q ss_pred CCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC---CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CC
Q 018198 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GA 331 (359)
Q Consensus 256 ~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~---~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~ 331 (359)
..+.+|+.++++|++.+ .+.|.++..+.... +..+.+.++++...++|||||||++.+ +++||++++.. ..
T Consensus 85 ~~~~~G~~v~~~G~~~~----~t~G~v~~~~~~v~~~~~~~~~~~i~~~~c~~~GDSGGPlv~~~-~~vGI~s~g~~~~~ 159 (181)
T 2sga_A 85 GNAFVGQAVQRSGSTTG----LRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLFAGS-TALGLTSGGSGNCR 159 (181)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEECGGGCEEEEEEEESCCCCTTCTTCEEEETT-EEEEEEEEEEEETT
T ss_pred ccCCCCCEEEEeecCCC----ccEEEEEEeEEEEECCCCCEEeeeEecccccCCCCCCCEEEECC-EEEEEEEeeCCCCc
Confidence 66789999999999865 45677766654321 111334677788888999999999765 99999999863 22
Q ss_pred cceeEEEEehHHHHHHHH
Q 018198 332 FSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 332 ~~~~~~aip~~~i~~~l~ 349 (359)
....+|+.|++.++++|.
T Consensus 160 ~~~~~v~~~v~~~~~~l~ 177 (181)
T 2sga_A 160 TGGTTFYQPVTEALSAYG 177 (181)
T ss_dssp TEEEEEEEEHHHHHHHHT
T ss_pred CCCceEEEEHHHHHHhcC
Confidence 245799999999888764
|
| >1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=136.67 Aligned_cols=117 Identities=17% Similarity=0.272 Sum_probs=92.3
Q ss_pred ccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEE---cCCCCCccceEecCCCCCCC
Q 018198 184 LRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHI---DAPNHELRPIHVSVSADLRV 260 (359)
Q Consensus 184 ~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v---~~~~~~~~~~~l~~~~~~~~ 260 (359)
+.+.||||+|+.++++||++||+.+.....|++ +|.++. +.+++..|+|++++ +.+ ..+|+++++. +++
T Consensus 13 ~~G~GsgF~i~~~g~vVTA~HVv~~~~~~~V~~-~G~~~~---Vgf~~~~DlA~l~v~~~~~~-g~~P~l~las---p~v 84 (198)
T 1mbm_A 13 SYGTGSVWTRNNEVVVLTASHVVGRANMATLKI-GDAMLT---LTFKKNGDFAEAVTTQSELP-GNWPQLHFAQ---PTT 84 (198)
T ss_dssp SEEEEEEEEETTEEEEEEEHHHHCTTCEEEEEE-TTEEEE---EECEEETTEEEEEECTTTSC-SCCCBCCBCC---CCS
T ss_pred cCCccceEEECCCeEEEEeeeEEccCceEEEEE-CCEEEE---eecccCCcEEEEEeeccCCC-CCCcccccCC---Ccc
Confidence 357899999999999999999999999999999 998887 66779999999999 443 3567888843 688
Q ss_pred CCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 261 GKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 261 G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
|+.-+. .+.|.+..+... ...++++ .|||||||++|.+ +||||+++..
T Consensus 85 G~a~~~----------~~tG~~~~l~g~------~g~l~~t---~PGDSGsPVl~~~-~vIGV~T~s~ 132 (198)
T 1mbm_A 85 GPASWC----------TATGDEEGLLSG------EVCLAWT---TSGDSGSAVVQGD-AVVGVHTGSN 132 (198)
T ss_dssp EEEEEE----------ETTEEEEEEECS------SCEECCC---CGGGTTCEEEETT-EEEEEEEEEE
T ss_pred cceEEe----------eccccEEEEecC------CceeEcC---CCCCCCCccccCC-eEEEEEeccC
Confidence 884333 455666666421 2455665 7899999999988 9999999943
|
| >1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=127.44 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=117.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecC------CcEEEEEEEEEcCC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSD------QSTFYAQVVGHDQV- 232 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~------g~~~~~~v~~~d~~- 232 (359)
..|.+|.|.... ...|+|++|+++ ||||+|||+.+. ..+.|++.. +..+..+-+..+++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y 78 (224)
T 1pq7_A 11 DFPFIVSISRNG-----------GPWCGGSLLNAN-TVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSY 78 (224)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECHHHHTTSCGGGEEEEESCSBSSSSSEEECEEEEEECTTC
T ss_pred CcCeEEEEEECC-----------CeEEEEEEecCC-EEEEcHHccCCCCCCceEEEeCcceecCCCEEEEEEEEEECCCC
Confidence 457888886321 237999999987 999999999753 457777632 33455555556654
Q ss_pred ----CCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccC------Cc
Q 018198 233 ----NDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIP------GR 292 (359)
Q Consensus 233 ----~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~------~~ 292 (359)
+|||||+++.+.. .+.++.|.. ......|+.+++.||+.... ..+....+..+....+ ..
T Consensus 79 ~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 158 (224)
T 1pq7_A 79 SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSA 158 (224)
T ss_dssp BTTBTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTT
T ss_pred CCCCCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCC
Confidence 5999999987643 456777763 33457899999999975321 2233333333322111 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHH
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l 351 (359)
....+++.. ...|.|+|||||+..+|.++||++++..-.. ..-+....+...++|+++.
T Consensus 159 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~g~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 223 (224)
T 1pq7_A 159 ITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223 (224)
T ss_dssp SCTTEEEECCTTCCCBCCTTCTTCEEECTTCCEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHH
T ss_pred CCCCeEEeecCCCCCCCCcCCCCcceECcCCeEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhh
Confidence 223566663 3578999999999778999999999862111 2235667777788877763
|
| >4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=122.63 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=117.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcCC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQV 232 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~~ 232 (359)
..|.+|.|........ ...|+|.+|+++ ||||+|||+.. .+.|.+.. ...+...-+..++.
T Consensus 11 ~~Pw~v~l~~~~~~~~-------~~~CgGtLI~~~-~VLTAAhC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (226)
T 4ag1_A 11 SRPYMAYLEIVTSNGP-------SKFCGGFLIRRN-FVLTAAHCAGR--SITVTLGAHNITEEEDTWQKLEVIKQFRHPK 80 (226)
T ss_dssp SSTTEEEEEEECSSSS-------CEEEEEEEEETT-EEEECGGGCCS--EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCCcEEEEEEEcCCCc-------ccEEEEEEEeCC-EEEECcccCCC--CeEEEeCCcccCCCCCcceEEEEEEEEeCCC
Confidence 4678888876432211 237999999987 99999999954 56666632 12344444455544
Q ss_pred -------CCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC----Cc
Q 018198 233 -------NDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP----GR 292 (359)
Q Consensus 233 -------~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~----~~ 292 (359)
+|||||+++.+.. .+.++.|... ..+..|+.+++.||.... ...+....+..+....+ ..
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 160 (226)
T 4ag1_A 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDF 160 (226)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTTSTTC
T ss_pred CCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHcccccCc
Confidence 5999999987542 4556666533 235689999999997532 22233333333332221 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....++.. ...|.|+|||||+ .++.++||.+++..... .-+.+..+...++|+++.++.
T Consensus 161 ~~~~~~Ca~~~~~~~~~C~GDsGgPl~-~~~~l~Gi~S~g~~c~~-~p~vyt~v~~~~~WI~~~i~~ 225 (226)
T 4ag1_A 161 DHNLQLCVGNPRKTKSAFKGDSGGPLL-CAGVAQGIVSYGRSDAK-PPAVFTRISHYRPWINQILQA 225 (226)
T ss_dssp CTTTEEEESCTTSCCBCCTTCTTCEEE-ETTEEEEEEEECBTTCC-SCEEEEEHHHHHHHHHHHHHH
T ss_pred CccceEeeccCCCCCcCccCCCCCceE-EcCEEEEEEEECCCCCC-CCCEEEEhHHHHHHHHHHHhc
Confidence 223456653 3578899999999 47899999999874332 256778899999999887753
|
| >1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-14 Score=123.58 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=115.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecCC----------cEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSDQ----------STFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~g----------~~~~~~v~~~ 229 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.|++... ..+..+-+..
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~ 78 (225)
T 1a7s_A 11 QFPFLASIQNQG-----------RHFCGGALIHAR-FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSE 78 (225)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEEC
T ss_pred CCCcEEEEecCC-----------CcEEEEEEeeCC-EEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEec
Confidence 457788886421 237999999987 999999999753 4577777421 2333333333
Q ss_pred c------CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccCCccc
Q 018198 230 D------QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIPGRLI 294 (359)
Q Consensus 230 d------~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~~~~~ 294 (359)
+ ..+|||||+++.+.. .+.++.|.... .+..|+.+++.||+.... ..+....+..+....+..
T Consensus 79 h~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~-- 156 (225)
T 1a7s_A 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP-- 156 (225)
T ss_dssp SSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT--
T ss_pred ccccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhcc--
Confidence 2 346999999987643 46677775433 346899999999985421 223333343333322221
Q ss_pred ccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhcC
Q 018198 295 QGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 295 ~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g 355 (359)
.+++.. ...|.|+|||||+. +|.++||.+++..+....-+.+..+...++|+++.++.-
T Consensus 157 -~~~Ca~~~~~~~~~C~GDSGgPl~~-~g~l~Gi~S~g~~~C~~~p~vyt~V~~~~~WI~~~~~~~ 220 (225)
T 1a7s_A 157 -NNVCTGVLTRRGGICNGDGGTPLVC-EGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNP 220 (225)
T ss_dssp -TEEEEECSSSSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHSC
T ss_pred -CceEEeccCCCCCcccCCCcchhee-CCEEEEEEEEccCCcCCCCcEEEEhHHhHHHHHHHhcCC
Confidence 455553 36789999999995 589999999984222222567788899999998887653
|
| >1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=125.65 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=116.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcCC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQV 232 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~~ 232 (359)
..|.+|.|...... ....|+|.+|+++ ||||+|||+.+ .+.|++.. ...+..+-+..+++
T Consensus 11 ~~Pw~v~l~~~~~~--------~~~~CgGsLI~~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (224)
T 1cgh_A 11 SRPYMAYLQIQSPA--------GQSRCGGFLVRED-FVLTAAHCWGS--NINVTLGAHNIQRRENTQQHITARRAIRHPQ 79 (224)
T ss_dssp SSTTEEEEEESTTT--------TSCEEEEEEEETT-EEEECGGGCCS--SEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCCcEEEEEEECCC--------CCeEEEEEEeeCC-EEEEhHHhCCC--CCEEEEeecccCCCCCccEEEEEEEEEcCCC
Confidence 45778888653211 1237999999987 99999999976 35555532 23445554555543
Q ss_pred -------CCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC----CCceeEeEEeeeecccC----Cc-
Q 018198 233 -------NDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW----SFTCTTGVISALDREIP----GR- 292 (359)
Q Consensus 233 -------~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~~----~~- 292 (359)
+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+....+ +.
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~ 159 (224)
T 1cgh_A 80 YNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSY 159 (224)
T ss_dssp CBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCCSBCEEEEEEBCCHHHHHHHCTTC
T ss_pred CCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCCCCCCCCcceEEEEEeeCHHHHHHHhCcC
Confidence 5999999987643 46777776433 35789999999997542 22333333333321111 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+++.. ...|.|+|||||+. +|.++||.+++. .....-+....+...+.|+++.++
T Consensus 160 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~-~~~~~p~vyt~V~~~~~WI~~~~~ 223 (224)
T 1cgh_A 160 DPRRQICVGDRRERKAAFKGDSGGPLLC-NNVAHGIVSYGK-SSGVPPEVFTRVSSFLPWIRTTMR 223 (224)
T ss_dssp CTTTEEEECCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECC-TTCCSCEEEEEGGGGHHHHHHHHH
T ss_pred CCcceEeeccCCCCCeEeeCCCccceEE-ccEEEEEEEEEC-CCCCCCeEEEEHHHhHHHHHHHhh
Confidence 112367763 35789999999995 789999999986 222234567778888888888765
|
| >1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-14 Score=123.87 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|..|.|... . ...|+|.+|+++ ||||+|||+.. .+.|++.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~----~-------~~~CgGsLI~~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 76 (225)
T 1npm_A 11 SQPWQAALFQG----E-------RLICGGVLVGDR-WVLTAAHCKKQ--KYSVRLGDHSLQSRDQPEQEIQVAQSIQHPC 76 (225)
T ss_dssp SSTTEEEEEET----T-------EEEEEEEEEETT-EEEECGGGCCS--SCEEEESCSBTTC--CCCEEECEEEEEECTT
T ss_pred CcCcEEEEeeC----C-------ceEEEEEEECCC-EEEEhHHcCCC--CceEEEeeeEcCCCCCCcEEEEEEEEEECCC
Confidence 45778888531 1 237999999987 99999999964 34555532 2233344333333
Q ss_pred ---------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeeccc----
Q 018198 232 ---------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREI---- 289 (359)
Q Consensus 232 ---------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~---- 289 (359)
.+|||||+++.+.. .+.|+.|.. .....|+.+++.||.... ...+....+..+....
T Consensus 77 y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 155 (225)
T 1npm_A 77 YNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN-LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA 155 (225)
T ss_dssp CCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECS-SCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHH
T ss_pred CCCCCccCccccEEEEeeCCcccCCCceeceECCC-CCCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHH
Confidence 24999999987543 467888864 446789999999997531 1233334443332211
Q ss_pred -CCcccccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHH
Q 018198 290 -PGRLIQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 290 -~~~~~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~ 352 (359)
.......+++.. ...|.|+|||||+. +|+++||++++..+. ...-+.+..+...++|+++.+
T Consensus 156 ~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~ 224 (225)
T 1npm_A 156 YPGKITEGMVCAGSSNGADTCQGDSGGPLVC-DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224 (225)
T ss_dssp STTTCCTTEEEEECTTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHH
T ss_pred hCCCCCCCEEeecCCCCCeecCCCCCchheE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 111223566663 46789999999994 789999999984222 123466788888888888764
|
| >1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-14 Score=125.29 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=115.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC---CCeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG---ASTVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~---~~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+ ...+.|++.. ...+..+-+..
T Consensus 13 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 80 (240)
T 1mza_A 13 SRPFMASIQYGG-----------HHVCGGVLIDPQ-WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP 80 (240)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEE
T ss_pred CCCeEEEEeeCC-----------ceEEEEEEecCC-EEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEe
Confidence 457888886421 237999999987 99999999864 4567777632 12344444444
Q ss_pred cC-------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeeccc----
Q 018198 230 DQ-------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREI---- 289 (359)
Q Consensus 230 d~-------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~---- 289 (359)
++ .+|||||+++.+.. .+.++.|.....+..|+.+++.||.... ...+....+..+....
T Consensus 81 hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~ 160 (240)
T 1mza_A 81 FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ 160 (240)
T ss_dssp CCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTST
T ss_pred CCCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCc
Confidence 43 46999999987543 4677778653566789999999997532 2233333343332111
Q ss_pred --C-C--cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEehHH-HHHHHHHHHh
Q 018198 290 --P-G--RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPIDT-VRGIVDQLVK 353 (359)
Q Consensus 290 --~-~--~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~~~-i~~~l~~l~~ 353 (359)
. . .....+++.. ...|.|+|||||+. +|.++||++++..-+. ..-+....+.. .++|+++.++
T Consensus 161 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~~ 235 (240)
T 1mza_A 161 SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLIC-KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV 235 (240)
T ss_dssp TTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEE-TTEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTC
T ss_pred ceeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEE-CCEEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhcc
Confidence 1 1 1223566663 35789999999995 7899999999862111 12344555665 8888877654
|
| >1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=125.86 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=117.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~------g~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~ 78 (222)
T 1eq9_A 11 KYPYQVSLRLSG-----------SHRCGASILDNN-NVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKN 78 (222)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEECSSS-EEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTT
T ss_pred CcceEEEEEeCC-----------CeEEEEEEeeCC-EEEEhhhcCCCCCCCceEEEEECceecCCCCeEEEEEEEEECCC
Confidence 457788886321 237999999987 999999999763 467777742 3445555455554
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccCC----cc
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIPG----RL 293 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~~----~~ 293 (359)
.+|||||+++.+.. .+.|+.|........|+.+++.||..... ..+....+..+....+. ..
T Consensus 79 y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 158 (222)
T 1eq9_A 79 YDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRV 158 (222)
T ss_dssp CBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSSC
T ss_pred CCCCCCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccCCC
Confidence 46999999987643 46788886554446899999999975321 22333333332211110 12
Q ss_pred cccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 294 IQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 294 ~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
...+++.. ...|.|+|||||+. +|.++||.+++..-....-+....+...++|+++.++
T Consensus 159 ~~~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~C~~~~p~vyt~V~~~~~WI~~~~~ 221 (222)
T 1eq9_A 159 IDSHICTLTKRGEGACHGDSGGPLVA-NGAQIGIVSFGSPCALGEPDVYTRVSSFVSWINANLK 221 (222)
T ss_dssp CTTEEEECCCTTCBCCTTCTTCEEEE-TTEEEEEEEECSTTTSSSCEEEEEGGGGHHHHHHTSC
T ss_pred CccEEeecCCCCCeeeeCCccceEEE-CCEEEEEEEECCCcCCCCCCEEEEHHHHHHHHHHHhh
Confidence 23456653 35789999999995 7899999999863221234667778888888887553
|
| >2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-14 Score=124.56 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=116.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEec-------CCcEEEEEEEEEcC---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS-------DQSTFYAQVVGHDQ--- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~-------~g~~~~~~v~~~d~--- 231 (359)
..|..|.|... ....|+|.+|+++ ||||+|||+.+...+.+-.. .+..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~-----------~~~~CgGsLIs~~-~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~ 78 (237)
T 2zch_P 11 SQPWQVLVASR-----------GRAVCGGVLVHPQ-WVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYD 78 (237)
T ss_dssp SCTTEEEEESS-----------SSEEEEEEEEETT-EEEECGGGCCSSCEEEESCSBSSSCCTTCEEEEEEEEEECTTSC
T ss_pred CCCCEEEEeeC-----------CCeEEEEEEecCC-EEEEcHHhcCCCceEEEecccccCCCCCcEEEEEEEEecCCCcc
Confidence 35777887632 1237999999987 99999999987554333221 12344444444443
Q ss_pred ---------------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeec
Q 018198 232 ---------------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDR 287 (359)
Q Consensus 232 ---------------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~ 287 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||.... ...+....+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~ 157 (237)
T 2zch_P 79 MSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPT-QEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISN 157 (237)
T ss_dssp GGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCS-SCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECH
T ss_pred hhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCC-CCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCH
Confidence 56999999987643 467777864 456789999999997532 12233333333322
Q ss_pred cc-----CCcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 288 EI-----PGRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 288 ~~-----~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.. .......+++.. ...|.|||||||+ .++.++||.+++..+. ...-+....+...++|+++.++.
T Consensus 158 ~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~ 235 (237)
T 2zch_P 158 DVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV-CNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVA 235 (237)
T ss_dssp HHHHHHCSSBCCTTEEEEECTTCSCBCCTTCTTCEEE-SSSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred HHhcccccCCCCceEEeecCCCCCCcccCCCccCeEE-ECCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence 11 111223456653 3578999999999 5789999999986222 12346678888899998887653
|
| >3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=121.84 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=117.2
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ 231 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~ 231 (359)
...|.+|.|....... ....|+|.+|+++ ||||+|||+.. .+.|.+.. ...+..+-+..++
T Consensus 10 ~~~Pw~v~l~~~~~~~-------~~~~CgGtLI~~~-~VLTAAhC~~~--~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp 79 (224)
T 3rp2_A 10 HSRPYMAHLDIVTEKG-------LRVICGGFLISRQ-FVLTAAHCKGR--EITVILGAHDVRKRESTQQKIKVEKQIIHE 79 (224)
T ss_dssp TSCTTEEEEEEECTTS-------CEEEEEEEESSSS-EEEECGGGCCS--EEEEEESCSBTTSCCTTCEEEEEEEEEECT
T ss_pred CCCCcEEEEEEecCCC-------cEEEEEeEEeeCC-EEEEchhcCCC--CcEEEEeccccCcCCCCcEEEEEEEEEECC
Confidence 3467888887643211 1237999999987 99999999854 56666632 1234455455554
Q ss_pred C-------CCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC----C
Q 018198 232 V-------NDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP----G 291 (359)
Q Consensus 232 ~-------~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~----~ 291 (359)
. +|||||+++.+.. .+.++.|... ..+..|+.+++.||.... ...+....+..+....+ .
T Consensus 80 ~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 159 (224)
T 3rp2_A 80 SYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY 159 (224)
T ss_dssp TCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTTC
T ss_pred CccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhccccc
Confidence 3 6999999987643 4566677543 335789999999996421 12233333333332222 1
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHH
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
......++.. ...|.|+|||||+. ++.++||.+++.... ..-..+..+...+.|+++.+
T Consensus 160 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~-~~p~vyt~v~~y~~WI~~~i 223 (224)
T 3rp2_A 160 YEYKFQVCVGSPTTLRAAFMGDSGGPLLC-AGVAHGIVSYGHPDA-KPPAIFTRVSTYVPWINAVI 223 (224)
T ss_dssp CCTTTEEEECCTTSCCBCCTTTTTCEEEE-TTEEEEEEEECCTTC-CSCEEEEEHHHHHHHHHHHH
T ss_pred cCcCCEEEecCCCCCCeeccCCCCCeEEE-cceeeEEEEECCCCC-CCCcEEEEHHHhHHHHHHHh
Confidence 1223456653 35788999999994 789999999986432 22567788999999998865
|
| >1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=125.34 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=115.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|....... ...|+|.+|+++ ||||+|||+.+ .+.|++.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~~~--------~~~CgGtLI~~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1iau_A 11 SRPYMAYLMIWDQKS--------LKRCGGFLIRDD-FVLTAAHCWGS--SINVTLGAHNIKEQEPTQQFIPVKRPIPHPA 79 (227)
T ss_dssp SSTTEEEEEEECSSC--------EEEEEEEEEETT-EEEECGGGCCS--EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CcCcEEEEEEECCCC--------ceEEEEEEEcCC-EEEECHHhCCC--ceEEEEccccccCCCCccEEEEEEEEECCCC
Confidence 357888886532110 137999999987 99999999975 45666632 2334454444444
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC-----C
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP-----G 291 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~-----~ 291 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+....+ .
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 159 (227)
T 1iau_A 80 YNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRH 159 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTTT
T ss_pred CCCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhcc
Confidence 45999999987543 46677776433 35789999999997532 12333333333321111 1
Q ss_pred ccc-ccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 292 RLI-QGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 292 ~~~-~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
... ..+++.. ...|.|+|||||+. +|.++||++++. +....-+....+...+.|+++.++
T Consensus 160 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~gc-~~~~~p~vyt~v~~~~~WI~~~~~ 225 (227)
T 1iau_A 160 YYDSTIELCVGDPEIKKTSFKGDSGGPLVC-NKVAQGIVSYGR-NNGMPPRACTKVSSFVHWIKKTMK 225 (227)
T ss_dssp TCCTTTEEEESCTTSCCBCCTTCTTSEEEE-TTEEEEEEEEEC-TTSCSCEEEEEGGGGHHHHHHHHH
T ss_pred ccCCCcEEEeECCCCCCeeeecCCCchheE-eeEEEEEEeEec-CCCCCCeEEEEHHHHHHHHHHHHh
Confidence 111 1266663 35789999999995 789999999983 211224566788888888887765
|
| >3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=121.86 Aligned_cols=180 Identities=15% Similarity=0.179 Sum_probs=117.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcCC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQV 232 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~~ 232 (359)
..|.+|.|........ ...|+|.+|+++ ||||+|||+. ..+.|.+.. ...+..+-+..++.
T Consensus 11 ~~Pw~v~l~~~~~~~~-------~~~CgGtLI~~~-~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (227)
T 3fzz_A 11 SRPYMAYYEFLKVGGK-------KMFCGGFLVRDK-FVLTAAHCKG--RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 80 (227)
T ss_dssp SSTTEEEEEEECSSSC-------EEEEEEEEEETT-EEEECTTCCC--EEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CcCCEEEEEEEeCCCc-------eeEEEEEEEeCC-EEEECcccCC--CCcEEEEcccccCCCCCCceEEEEEEEEECcC
Confidence 4578888876432211 237999999987 9999999985 355666632 23344554555554
Q ss_pred -------CCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC------
Q 018198 233 -------NDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP------ 290 (359)
Q Consensus 233 -------~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~------ 290 (359)
+|||||+++.+.. .+.++.|... ..+..|+.+++.||.... ...+....+..+....+
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 160 (227)
T 3fzz_A 81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQS 160 (227)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHHTT
T ss_pred CCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhhcc
Confidence 5999999987543 4567777543 335789999999997532 12233333433322111
Q ss_pred CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 291 GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 ~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.......++.. ...|.|+|||||+. ++.++||.+++.... ..-+.+..+...++|+++.++
T Consensus 161 ~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~-~~~l~Gi~S~g~~c~-~~p~vyt~V~~~~~WI~~~i~ 226 (227)
T 3fzz_A 161 SYNRANEICVGDSKIKGASFEEDSGGPLVC-KRAAAGIVSYGQTDG-SAPQVFTRVLSFVSWIKKTMK 226 (227)
T ss_dssp TCCTTTEEEECCCSSCBCCTTTTTTCEEEE-TTEEEEEEEECCTTC-SSSEEEEEGGGTHHHHHHHHT
T ss_pred ccCCCceEEEeCCCCCCcccccCCccceEE-ecCCcEEEEECCCCC-CCCeEEEEhHHhHHHHHHHHh
Confidence 11123556653 35788999999994 679999999986322 224667788888999888765
|
| >1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=120.10 Aligned_cols=178 Identities=16% Similarity=0.210 Sum_probs=114.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC---------CcEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD---------QSTFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~---------g~~~~~~v~~~d 230 (359)
..|.+|.|....... ...|+|.+|+++ ||||+|||+.+.. .+.|.+.. ...+...-+..+
T Consensus 11 ~~Pw~v~l~~~~~~~--------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 81 (221)
T 1fuj_A 11 SRPYMASLQMRGNPG--------SHFCGGTLIHPS-FVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLN 81 (221)
T ss_dssp SCTTEEEEEETTBTT--------CCCEEEEEEETT-EEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEEC
T ss_pred CcCCEEEEEEecCCC--------CEEEEEEEecCC-EEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEeC
Confidence 457888886532111 236999999987 9999999997643 57777642 223333333332
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccCCcccc
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIPGRLIQ 295 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~~~~~~ 295 (359)
..+|||||+++.+.. .+.++.|.... .+..|+.+++.||+.... ..+....+..+ ......
T Consensus 82 ~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~--- 157 (221)
T 1fuj_A 82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCRP--- 157 (221)
T ss_dssp CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CTTCCT---
T ss_pred CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEE-eeecCC---
Confidence 346999999987643 46777776443 346899999999975321 22333333333 222211
Q ss_pred cEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 296 GVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 296 ~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..++.. ...|.|+|||||+. +|.++||.++...+. ...-+.+..+...++|+++.++
T Consensus 158 ~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~ 221 (221)
T 1fuj_A 158 HNICTFVPRRKAGICFGDSGGPLIC-DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221 (221)
T ss_dssp TEEEEECSSSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred ceeeeccCCCCCCCCCCCCCCeeEE-CCEEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence 245542 35789999999995 789999999943111 1224567788888888887653
|
| >1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-14 Score=124.90 Aligned_cols=179 Identities=20% Similarity=0.235 Sum_probs=117.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC---------cEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ---------STFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g---------~~~~~~v~~~d~- 231 (359)
..|..|.|.... ....|+|.+|+++ ||||+|||+.....+.|++... ..+..+.+..++
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (228)
T 1fxy_A 11 EVPWQALLINEE----------NEGFCGGTILSEF-YILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNR 79 (228)
T ss_dssp SCTTEEEEECTT----------SCEEEEEEECSSS-EEEECGGGTTSCSSCEEEEECSCTTTCCCCEEEEEEEEEEECTT
T ss_pred CcCcEEEEEcCC----------CCeeEEEEEeeCC-EEEECHHHCCCCCcEEEEECccCccccCCCcEEEEEEEEEECCC
Confidence 357777775321 1237999999987 9999999997666677776421 223444444443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeeccc-----CC
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREI-----PG 291 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~-----~~ 291 (359)
.+|||||+++.+.. .+.|+.|.. .....|+.+++.||.... ...+....+..+.... ..
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~~~v~picLp~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 158 (228)
T 1fxy_A 80 FTKETYDFDIAVLRLKTPITFRMNVAPASLPT-APPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG 158 (228)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT
T ss_pred CCCCCCcCcEEEEEECCcccCCCceeccCCCC-CCCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCC
Confidence 46999999987643 467777854 445789999999997532 1223333333332211 11
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.....+++.. ...|.|+|||||+ .+++++||++++..-. ...-+.+.-+...++|+++.++
T Consensus 159 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~ 225 (228)
T 1fxy_A 159 KITSNMFCVGFLEGGKDSCQGDSGGPVV-CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225 (228)
T ss_dssp TCCTTEEEESCTTCSCBCCTTCTTCEEE-ETTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred CCCCCEEEeccCCCCCccccCccccceE-ECCEEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHh
Confidence 2223566663 3578999999999 4789999999986221 1234667788888888888765
|
| >1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-14 Score=124.03 Aligned_cols=178 Identities=20% Similarity=0.201 Sum_probs=117.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|... . ...|+|.+|+++ ||||+|||+.+...+.|.+.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~----~-------~~~CgGtLI~~~-~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 78 (226)
T 1azz_A 11 SWPHQAALFID----D-------MYFCGGSLISPE-WILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN 78 (226)
T ss_dssp SSTTEEEEEET----T-------TEEEEEEEEETT-EEEECHHHHTTCSCEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred CcCCEEEEEEC----C-------cEEEEEEEecCC-EEEEhHHhcCCCCceEEEEcceEcCCCCCccEEEEEEEEEECCC
Confidence 45788888651 1 237999999987 999999999887778888742 1233333333443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccC----Cc
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIP----GR 292 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~----~~ 292 (359)
.+|||||+++.+.. .+.++.|.... ...|+.+++.||..... ..+....+..+....+ +.
T Consensus 79 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 157 (226)
T 1azz_A 79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI 157 (226)
T ss_dssp CBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSC-CCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSC
T ss_pred CCCCCCCCceEEEEECCccccCCCcccccCCCCC-CCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhCc
Confidence 46999999987643 46777786443 47899999999975322 2233333333321111 11
Q ss_pred ccccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecC-CC-cceeEEEEehHHHHHHHHHHHh
Q 018198 293 LIQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITS-GA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 293 ~~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+++.. ...|.|+|||||+ .+|.++||.+++.. +. ...-+.+..+...++|+++.++
T Consensus 158 ~~~~~~Ca~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~ 223 (226)
T 1azz_A 158 VTDGNICIDSTGGKGTCNGDSGGPLN-YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223 (226)
T ss_dssp CCTTEEEECCTTTCBCCTTCTTCEEE-ETTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHC
T ss_pred CCCceEeecCCCCCccCCCCCCcceE-ECCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHhC
Confidence 223456653 3578999999999 58899999999862 22 1223567778888888888764
|
| >3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-14 Score=124.14 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=119.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC--CCeEEEEecC------CcEEEEEEEEEc---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG--ASTVKVSFSD------QSTFYAQVVGHD--- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~--~~~~~v~~~~------g~~~~~~v~~~d--- 230 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+ ...+.|.+.. +..+..+-+..+
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~h~y~ 78 (235)
T 3h7t_A 11 KEPWAVGVLVDE-----------KPFCGGSILTAN-FVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYH 78 (235)
T ss_dssp TSTTEEEEEETT-----------SCCEEEEESSSS-EEEECHHHHTTCCGGGEEEEESCSBSSSSSEEEEEEEEEECSCB
T ss_pred CCCcEEEEecCC-----------CceEeEEEeeCC-EEEECHHHCCCCCCCeeEEEcCccccccCCceeeeeeEEeeecC
Confidence 457888887521 236999999987 99999999954 3467777743 233444333322
Q ss_pred ---CCCCEEEEEEcCCCC----CccceEecCCC-CCCCCCEEEEEecCCCC------CCceeEeEEeeeecccC-----C
Q 018198 231 ---QVNDLAVLHIDAPNH----ELRPIHVSVSA-DLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP-----G 291 (359)
Q Consensus 231 ---~~~DlAll~v~~~~~----~~~~~~l~~~~-~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~-----~ 291 (359)
..+|||||+++.+.. .+.++.|.... .+..|+.+++.||+... ...+....+..+....+ .
T Consensus 79 ~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 158 (235)
T 3h7t_A 79 PLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQ 158 (235)
T ss_dssp TTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHT
T ss_pred CCCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhh
Confidence 346999999987543 46677775433 26789999999997532 22333444433332111 1
Q ss_pred -----cccccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 292 -----RLIQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 292 -----~~~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....+++. ....|.|+|||||+. +|+++||.+++..-....-+.+..+...+.|+++.++.
T Consensus 159 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~~i~~ 230 (235)
T 3h7t_A 159 IEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-NGTLVGVASYISSMPSEFPSVFLRVGYYVLDIKDIISG 230 (235)
T ss_dssp TTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEE-TTEEEEEECCCTTCCTTSCEEEEEGGGGHHHHHHHHTT
T ss_pred cccCccccCCeEecCCCCCCCccccCCCCCceee-CCeEEEEEEecCCCCCCCCceEEEHHHHHHHHHHHHhC
Confidence 122356776 345789999999995 88999999998632212346678888899999887764
|
| >2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=122.50 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC---------CcEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD---------QSTFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~---------g~~~~~~v~~~d 230 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. .+.|.+.. ...+..+-+..+
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 78 (228)
T 2xw9_A 11 ARPYMASVQLNG-----------AHLCGGVLVAEQ-WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPH 78 (228)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCCcEEEEEECC-----------CeEEEEEEEeCC-EEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeC
Confidence 457788886421 237999999987 9999999996543 67777742 133444444444
Q ss_pred C-------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----
Q 018198 231 Q-------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP---- 290 (359)
Q Consensus 231 ~-------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~---- 290 (359)
+ .+|||||+++.+.. .+.|+.|... ..+..|+.+++.||..... ..+....+..+....+
T Consensus 79 p~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 158 (228)
T 2xw9_A 79 PDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT 158 (228)
T ss_dssp TTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTT
T ss_pred CCCCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCcc
Confidence 4 46999999987643 4566777543 3467899999999975321 2233332222221111
Q ss_pred ---CcccccEEEEc---ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHH
Q 018198 291 ---GRLIQGVIQID---ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 ---~~~~~~~i~~~---~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~ 352 (359)
......+++.. ...|.|+|||||+. +|.++||++++..+.. ..-+....+...++|+++.+
T Consensus 159 ~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~-~~~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i 227 (228)
T 2xw9_A 159 HHDGAITERLMCAESNRRDSCKGDAGGPLVC-GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227 (228)
T ss_dssp TTTTCCCTTEEEECCSSCBCCTTCTTCEEEE-TTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred ccCCcccCCEEecCCCCCccCCCCCcccEEE-CCEEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHh
Confidence 11223456653 35789999999995 7899999998762221 23466788888888888765
|
| >2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=121.57 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=113.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecCC---------cEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSDQ---------STFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~g---------~~~~~~v~~~d 230 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.|++... ..+..+-+..+
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 78 (218)
T 2z7f_E 11 AWPFMVSLQLRG-----------GHFCGATLIAPN-FVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFEN 78 (218)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEES
T ss_pred ccCcEEEEEeCC-----------CcEEEEEEccCC-EEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEcc
Confidence 457888886421 237999999987 999999999764 3567776431 23444333333
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccCCcccc
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIPGRLIQ 295 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~~~~~~ 295 (359)
..+|||||+++.+.. .+.|+.|.... .+..|+.+++.||+.... ..+....+..+ ......
T Consensus 79 ~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~--- 154 (218)
T 2z7f_E 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRR--- 154 (218)
T ss_dssp CCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEE-CTTCCT---
T ss_pred CCCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEe-hhHcCc---
Confidence 346999999987543 46677776433 356899999999975322 22333333333 222211
Q ss_pred cEEEEc-----ccCCCCCccceeecCCCeEEEEEee--ecCCCcceeEEEEehHHHHHHHHHHH
Q 018198 296 GVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTF--ITSGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 296 ~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~--~~~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
..++.. ...|.|+|||||+. +|.++||.++ +.-+....-+....+...++|+++.+
T Consensus 155 ~~~Ca~~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~~~g~C~~~~~p~vyt~V~~~~~WI~~~~ 217 (218)
T 2z7f_E 155 SNVCTLVRGRQAGVCFGDSGSPLVC-NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217 (218)
T ss_dssp TSEEEECTTSCCBCCTTCTTCEEEE-TTEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHH
T ss_pred ceeeeccCCCCCeeCCCcCCCceEE-ccEEEEEEEeCCccCCCCCCCeEEEEHHHhHHHHHHHh
Confidence 134442 45789999999994 7899999999 42111112366788888888888765
|
| >1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=121.14 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=114.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
-.|.+|.|... + ...|+|.+|+++ ||||+|||+... +.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~---~--------~~~CgGtLIs~~-~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 76 (223)
T 1lo6_A 11 SHPYQAALYTS---G--------HLLCGGVLIHPL-WVLTAAHCKKPN--LQVFLGKHNLRQRESSQEQSSVVRAVIHPD 76 (223)
T ss_dssp SCTTEEEEEET---T--------EEEEEEEEEETT-EEEECGGGCCTT--CEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCCCEEEEecC---C--------CEEEEeEEecCC-EEEECccCCCCC--eEEEEcceecCCCCCCcEEEEEEEEEECCC
Confidence 35778888531 1 237999999987 999999999743 4455421 2334444344443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC----CCceeEeEEeeeecc-----cCCcc
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW----SFTCTTGVISALDRE-----IPGRL 293 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~-----~~~~~ 293 (359)
.+|||||+++.+.. .+.|+.|.. .....|+.+++.||.... ...+....+..+... .....
T Consensus 77 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 155 (223)
T 1lo6_A 77 YDAASHDQDIMLLRLARPAKLSELIQPLPLER-DCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQI 155 (223)
T ss_dssp CCTTTCTTCCEEEEESSCCCCBTTBCCCCBCC-CTTCCCCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHSTTTC
T ss_pred CCCCCCcCeEEEEEECCcccCCCceeecccCC-CCCCCCCEEEEEEECCCCCCCcCceeeEEEEEEeCHHHhhhhhCCCC
Confidence 46999999987643 466778854 344789999999997542 122333333333221 11122
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...+++.. ...|.|+|||||+. +|+++||++++..+. ...-+....+...++|+++.++.
T Consensus 156 ~~~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~ 222 (223)
T 1lo6_A 156 TQNMLCAGDEKYGKDSCQGDSGGPLVC-GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA 222 (223)
T ss_dssp CTTEEEEECTTTCCBCCTTTTTCEEEE-TTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred CCCeEEeecCCCCCeeccccCCCcEEe-CCEEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence 23567763 35789999999995 789999999984221 12346678888899999887653
|
| >1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=121.50 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=114.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|..|.|.. . ...|+|.+|+++ ||||+|||+.. .+.|++.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~-----~-------~~~CgGsLIs~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 75 (222)
T 1hj8_A 11 SQPHQVSLNS-----G-------YHFCGGSLVNEN-WVVSAAHCYKS--RVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75 (222)
T ss_dssp SCTTEEEEES-----S-------SEEEEEEEEETT-EEEECGGGCCS--SCEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred CCCEEEEEEc-----C-------CcEEEeEEecCC-EEEECHHhcCC--CeEEEEcccccccCCCCcEEEEEEEEEECCC
Confidence 3577888752 1 137999999987 99999999974 34455422 2334444444444
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecc-----cCCc
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDRE-----IPGR 292 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~-----~~~~ 292 (359)
.+|||||+++.+.. .+.|+.|.. ..+..|+.+++.||+.... ..+....+..+... ....
T Consensus 76 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 154 (222)
T 1hj8_A 76 YSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGM 154 (222)
T ss_dssp CBTTTTBSCCEEEEESSCCCCSSSCCCCBCCS-SCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTTC
T ss_pred CCCCCCCCcEEEEEECCcccCCCceeccCCCC-CCCCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccCC
Confidence 46999999987643 467788864 3467899999999975421 22333333333211 1111
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHh
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+++.. ...|.|+|||||+. +|+++||.+++..-.. ..-+.+..+...++|+++.++
T Consensus 155 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~ 220 (222)
T 1hj8_A 155 ITNAMFCAGYLEGGKDSCQGDSGGPVVC-NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220 (222)
T ss_dssp CCTTEEEESCTTSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CCCCeEEeccCCCCCccCCCCcccceEE-CCEEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHhh
Confidence 223566663 35789999999995 7899999999862211 234667778888888887664
|
| >3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=121.82 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=114.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|. . . ...|+|.+|+++ ||||+|||+. ..+.|++.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~--~--~--------~~~CgGsLIs~~-~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 75 (223)
T 3mfj_A 11 TVPYQVSLN--S--G--------YHFCGGSLINSQ-WVVSAAHCYK--SGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75 (223)
T ss_dssp SSTTEEEEE--S--S--------SEEEEEEEEETT-EEEECGGGCC--SSCEEEESCSSTTSCCSCCEEEEEEEEEECTT
T ss_pred cCCEEEEEE--c--C--------CeEEEEEEecCC-EEEEhHHhcC--CCcEEEECCceecccCCCcEEEEeeEEEECCC
Confidence 457788883 1 1 136999999987 9999999995 345565532 2334444444443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeecc-----cCC
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDRE-----IPG 291 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~-----~~~ 291 (359)
.+|||||+++.+.. .+.|+.|... ....|+.+++.||+... ...+....+..+... ...
T Consensus 76 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 154 (223)
T 3mfj_A 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG 154 (223)
T ss_dssp CCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSS-CCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT
T ss_pred CCCCCCCCCEEEEEeCCCcccCCcEeeeECCCC-CCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcC
Confidence 46999999987643 4677888643 45789999999997542 122333333333221 111
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.....+++.. ...|.|+|||||+. +|+++||++++..-. ...-+....+...++|+++.++
T Consensus 155 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~ 221 (223)
T 3mfj_A 155 QITSNMFCAGYLEGGKDSCQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221 (223)
T ss_dssp TCCTTEEEESCTTSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred cCCCCEEEccCCCCCCCcCCCCcccceEE-CCEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHh
Confidence 1223567764 25789999999995 789999999985221 1234667888888888887664
|
| >1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-13 Score=121.49 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=118.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|...... . ....|+|.+|+++ ||||+|||+.....+.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~~-~------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (241)
T 1bru_P 11 SWPWQVSLQYDSSG-Q------WRHTCGGTLVDQS-WVLTAAHCISSSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQD 82 (241)
T ss_dssp SSTTEEEEEEEETT-E------EEEEEEEEEEETT-EEEECGGGCCTTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred CcCcEEEEEEecCC-c------eeeEEEeEEeeCC-EEEEcHHhcccCCceEEEEEcccccCCCCccEEEEEEEEEECCC
Confidence 45788888753211 0 0237999999987 999999999855677787742 2334444444443
Q ss_pred ------C--CCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC----
Q 018198 232 ------V--NDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP---- 290 (359)
Q Consensus 232 ------~--~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~---- 290 (359)
. +|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+....+
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~ 162 (241)
T 1bru_P 83 WNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPG 162 (241)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTSTT
T ss_pred CCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCccc
Confidence 2 7999999987643 46677776443 35689999999997532 12333333333322111
Q ss_pred --C-cccccEEEEc----ccCCCCCccceeecC--CC--eEEEEEeeecC-CCc--ceeEEEEehHHHHHHHHHHHh
Q 018198 291 --G-RLIQGVIQID----ASVNLGNSGGPLLDS--SG--SLIGVNTFITS-GAF--SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 --~-~~~~~~i~~~----~~~~~G~SGgPl~~~--~G--~viGi~~~~~~-~~~--~~~~~aip~~~i~~~l~~l~~ 353 (359)
+ .....+++.. ...|.|+|||||+-. +| .++||++++.. +.. ..-+.+..+...++|+++.++
T Consensus 163 ~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~ 239 (241)
T 1bru_P 163 WWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239 (241)
T ss_dssp TTGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred ccCCcCCCceEeecCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence 1 1123567764 357899999999953 46 89999999852 211 224567778888888887765
|
| >4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=120.86 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=115.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
-.|.+|.|.. . ...|+|.+|+++ ||||+|||+... +.|++.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~----~--------~~~C~GtLI~~~-~VLTAAhC~~~~--~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~ 75 (223)
T 4i8h_A 11 TVPYQVSLNS----G--------YHFCGGSLINSQ-WVVSAAHCYKSG--IQVRLGEDNINVVEGNEQFISASKSIVHPS 75 (223)
T ss_dssp SSTTEEEEES----S--------SEEEEEEECSSS-EEEECGGGCCSS--CEEEESCSSTTSCCSCCEEEEEEEEEECTT
T ss_pred CCCeEEEecC----C--------CcEEEEEEEcCC-EEEecHHhCCCC--cEEEEccccccccCCCcEEEEEeEEEECcC
Confidence 3567787751 1 236999999987 999999999754 3444421 2234444444554
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeeccc-----CC
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREI-----PG 291 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~-----~~ 291 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||..... ..+....+..+.... ..
T Consensus 76 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 154 (223)
T 4i8h_A 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG 154 (223)
T ss_dssp CCTTTCTTCCEEEEESSCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT
T ss_pred CCCCCCcCCEEEEEECCcCcCCCceeceECCC-CCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCC
Confidence 46999999987543 467778864 3467899999999975322 123333333332211 11
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhc
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....+++.. ...|.|+|||||+. +++++||.+++..-. ...-+.+..+...++|+++.++.
T Consensus 155 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~ 222 (223)
T 4i8h_A 155 QITSNMFCAGYLEGGKDSCQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS 222 (223)
T ss_dssp TCCTTEEEESCTTSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred CCCCCeEeccCCCCCCccCCCCCCCcEEE-CCEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence 2233566663 35788999999994 689999999986322 12246678888899998887753
|
| >3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=121.06 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC--------CcEE--EEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD--------QSTF--YAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~--------g~~~--~~~v~~~d~ 231 (359)
..|.+|.|..... ....|+|.+|+++ ||||+|||+... ..|.+.. .... ....+..++
T Consensus 11 ~~Pw~v~l~~~~~---------~~~~CgGtLI~~~-~VLTAAHC~~~~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~ 78 (234)
T 3s9c_A 11 EHPFLVALYTSAS---------STIHCAGALINRE-WVLTAAHCDRRN--IRIKLGMHSKNIRNEDEQIRVPRGKYFCLN 78 (234)
T ss_dssp SCTTEEEEEETTE---------EEEEEEEEEEETT-EEEECGGGCCTT--EEEEESCSSSSSCCTTCEEECEEEEECCSS
T ss_pred CCCeEEEEEECCC---------CcEEEeeEEeeCC-EEEEchhhcCCC--ceEEEeecccccccCCcceEEeeeEEEeCC
Confidence 4577888864311 1236999999987 999999999754 4444421 1111 122222232
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC----CCceeEeEEeeeecccCC------
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW----SFTCTTGVISALDREIPG------ 291 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~~~------ 291 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||+... ...+....+..+......
T Consensus 79 ~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 157 (234)
T 3s9c_A 79 TKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPS-RSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWV 157 (234)
T ss_dssp CSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCSBTTBCCSSCEEEEEEEECGGGTTTTCTTS
T ss_pred CCCCCCCcCceEEEEECCccccCCcccccccCC-CCCCCCCeEEEEeeCCCCCCCCCccccccceEecCHHHhhhcccCC
Confidence 35999999987543 567788864 445679999999997532 222333333333322221
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHhcCc
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVKFSR 356 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~~g~ 356 (359)
.....+++.. ...|.|+|||||+ .+++++||.+++..... ..-+.+..+...++|+++.++..+
T Consensus 158 ~~~~~~~Ca~~~~~~~~~C~GDSGgPl~-~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~ 228 (234)
T 3s9c_A 158 PADSRTLCAGILKGGRDTCHGDSGGPLI-CNGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGNR 228 (234)
T ss_dssp CTTSSEEEEECTTSSCBCCTTCTTCEEE-ETTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCS
T ss_pred CCCcceEEeecCCCCCccCCCCCCCeEE-EeCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCCC
Confidence 1123456663 3578899999999 47899999999864221 234677888899999998887654
|
| >2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=121.12 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=114.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC----------CcEEEEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD----------QSTFYAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~----------g~~~~~~v~~~d~ 231 (359)
..|.+|.|... + ...|+|.+|+++ ||||+|||+.+. ..|.+.. ...+..+.+..++
T Consensus 11 ~~Pw~v~l~~~----~-------~~~CgGsLIs~~-~VLTAAHC~~~~--~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp 76 (223)
T 2bdg_A 11 SQPWQAALVME----N-------ELFCSGVLVHPQ-WVLSAAHCFQNS--YTIGLGLHSLEADQEPGSQMVEASLSVRHP 76 (223)
T ss_dssp SSTTEEEEECS----S-------CEEEEEEEEETT-EEEECGGGCCSS--EEEEESCSBSCGGGCTTCEEEEEEEEEECT
T ss_pred CCCcEEEEeeC----C-------CEEEEEEEecCC-EEEEhHHhCCCC--eEEEEeeeecCCCCCCCcEEEEEEEEEeCC
Confidence 35778888641 1 237999999987 999999999754 4444421 1234444444443
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC----CceeEeEEeeeeccc-----CCc
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS----FTCTTGVISALDREI-----PGR 292 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~-----~~~ 292 (359)
.+|||||+++.+.. .+.|+.|.. ..+..|+.+++.||+.... ..+....+..+.... ...
T Consensus 77 ~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 155 (223)
T 2bdg_A 77 EYNRPLLANDLMLIKLDESVSESDTIRSISIAS-QCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPL 155 (223)
T ss_dssp TTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCS-SCCCTTCEEEEEESCCCTTSCCCSBCEEEEEEBCCHHHHHHHSTTT
T ss_pred CCCCCCCcCcEEEEEECCcccCCCceecccCCC-CCCCCCCEEEEEeCcccCCCCCCCcceEEEEEEeCHHHhhhhhCCC
Confidence 46999999987643 466777754 4457899999999985432 223333333332211 111
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+++.. ...|.|+|||||+. ++.++||.+++..+. ...-+....+...++|+++.++
T Consensus 156 ~~~~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~ 222 (223)
T 2bdg_A 156 YHPSMFCAGGGQDQKDSCNGDSGGPLIC-NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222 (223)
T ss_dssp CCTTEEEECCSTTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred CCCCeEeccCCCCCCCcCCCCCCchheE-ccEEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence 223567764 25789999999994 689999999985221 1234667888888888887654
|
| >1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=125.79 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=102.1
Q ss_pred ceEEEEEEeCCCEEEecccccCCC--CeE----EEEecC------CcEEEEEEEEEc--------CCCCEEEEEEcCCCC
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGA--STV----KVSFSD------QSTFYAQVVGHD--------QVNDLAVLHIDAPNH 245 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~--~~~----~v~~~~------g~~~~~~v~~~d--------~~~DlAll~v~~~~~ 245 (359)
..|+|++|+++ ||||+|||+.+. ..+ .|.+.. +..+..+-+..+ ..+|||||+++.+..
T Consensus 30 ~~CgGtLIs~~-~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~ 108 (215)
T 1p3c_A 30 SSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIG 108 (215)
T ss_dssp CEEEEEEEETT-EEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCCGGGCCEEEEESSCHH
T ss_pred ceEEEEEEeCC-EEEECccEeccCCCCccccceEEEEcccCCCCCCCeEEEEEEEeCCccccCCCcccCEEEEEECCCCc
Confidence 37999999987 999999999543 344 666632 223444444433 356999999997421
Q ss_pred -CccceEecCCCCCCCCCEEEEEecCCCC----CCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeE
Q 018198 246 -ELRPIHVSVSADLRVGKKIYAIGHPLGW----SFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSL 320 (359)
Q Consensus 246 -~~~~~~l~~~~~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~v 320 (359)
.+.++.|... ....|+.++++||+... ........+..+....+ .....+...|.|+|||||+..+|.+
T Consensus 109 ~~v~pi~l~~~-~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~~~~~~~c-----~~~~~~~~~C~GDSGgPl~~~~g~l 182 (215)
T 1p3c_A 109 NTVGYRSIRQV-TNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDT-----NLAYYTIDTFSGNSGSAMLDQNQQI 182 (215)
T ss_dssp HHHCCCCBCCC-SCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECS-----SEEEECCCCCTTCTTCEEECTTSCE
T ss_pred ccceeeecCCC-cccCCCeEEEecCCCCCcccccceechhccCccCcccc-----hheeeccccCCCCCCCeeEccCCeE
Confidence 3567777543 45789999999998421 11112222221211111 1122356789999999999778999
Q ss_pred EEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 321 IGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 321 iGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
+||++++.... ..-+....+...+.++++...
T Consensus 183 vGi~S~g~~c~-~~p~v~t~v~~~~~WI~~~~~ 214 (215)
T 1p3c_A 183 VGVHNAGYSNG-TINGGPKATAAFVEFINYAKA 214 (215)
T ss_dssp EEECCEEEGGG-TEEEEEBCCHHHHHHHHHHHT
T ss_pred EEEEecccCCC-ccCceeEechHHHHHHHHHhc
Confidence 99999886322 333445567788888877543
|
| >3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=127.24 Aligned_cols=118 Identities=24% Similarity=0.285 Sum_probs=80.9
Q ss_pred cceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEE
Q 018198 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKI 264 (359)
Q Consensus 185 ~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v 264 (359)
.+.|+||.|+.+++||||+||+.+.+. +...++.++. ..+++..|+|++++......+|.++++... ..|...
T Consensus 29 ~GsGt~F~i~g~~~VvTA~HVVg~~~~--vVt~~g~r~~---~~f~~~~D~All~i~~~~g~~P~lKlA~~~--~~G~a~ 101 (213)
T 3fan_A 29 MGSGGVFTIDGKIKCVTAAHVLTGNSA--RVSGVGFNQM---LDFDVKGDFAIADCPNWQGVAPKAQFCEDG--WTGRAY 101 (213)
T ss_dssp EEEEEEEEETTEEEEEEEGGGSBTTEE--EEEETTEEEE---EECEEETTEEEEECTTCCSCCCBCCBCCTT--CCEEEE
T ss_pred CCceEEEEECCcEEEEEeccEeCCCCE--EEecCCcEEE---EEecCCCcEEEEEccCcCCCCCcceeeeee--ccCceE
Confidence 468999999877799999999999887 4445666664 366999999999997645568888886322 233333
Q ss_pred EEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 265 YAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 265 ~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
+..-+ ....|.+.. + ..+.+ ..+|||||||+|.+|+||||++...
T Consensus 102 ~~~~~------gv~~G~i~~------~----~al~~---T~pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 102 WLTSS------GVEPGVIGN------G----FAFCF---TACGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp EEETT------EEEEEEEET------T----EEEES---SCCCSTTCEEEETTSCEEEEEEC--
T ss_pred EEEcc------Ccccccccc------C----CEEEe---cCCCCCCCccCCCCCcEEEEEeccC
Confidence 33322 123333321 0 11222 2689999999999999999999875
|
| >1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-14 Score=125.32 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=112.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.. .+.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGsLIs~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 76 (237)
T 1gvz_A 11 SKPWQVAVYHQG-----------HFQCGGVLVHPQ-WVLTAAHCMSD--DYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQ 76 (237)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCS--SCEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred CCCeEEEEeeCC-----------ceEEEeEEeeCC-EEEEcHHhCCC--CCeEEEeecccccCCCCceEEEeeeEecCCc
Confidence 357788886321 136999999987 99999999973 44555522 2333344444443
Q ss_pred -----------------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC-C-C----ceeEeEEeee
Q 018198 232 -----------------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW-S-F----TCTTGVISAL 285 (359)
Q Consensus 232 -----------------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~-~-~----~~~~G~vs~~ 285 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||.... . . .+....+..+
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 155 (237)
T 1gvz_A 77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPT-QEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQ 155 (237)
T ss_dssp SCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEE
T ss_pred cCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCC-CCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEe
Confidence 67999999987643 467778864 346789999999997542 1 1 2222333333
Q ss_pred ecccCC-----cccccEEEEcc-----cCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHh
Q 018198 286 DREIPG-----RLIQGVIQIDA-----SVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 286 ~~~~~~-----~~~~~~i~~~~-----~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+. .....+++... ..|.|+|||||+. +|.++||.+++..+.. ..-+....+...++|+++.++
T Consensus 156 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 234 (237)
T 1gvz_A 156 SNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALIC-DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234 (237)
T ss_dssp CGGGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEE-TTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHH
T ss_pred ChhHhhhhhhhcCCCceEEEeeCCCCCccCCCCccCcEee-CCEEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence 222211 11234566532 4688999999994 7899999999852221 112356677778888877654
|
| >4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=122.61 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=115.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC------cE--EEEEEEEEcC--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ------ST--FYAQVVGHDQ-- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g------~~--~~~~v~~~d~-- 231 (359)
-.|.+|.|.... . ....|+|.+|+++ ||||+|||+.....+.+...+. .. ...+.+..++
T Consensus 11 ~~Pw~v~l~~~~--~-------~~~~CgGtLI~~~-~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 80 (238)
T 4e7n_A 11 EHRFLVALYTSR--S-------RTLFCGGTLINQE-WVLTAAHCDRKNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSK 80 (238)
T ss_dssp SCTTEEEEECTT--T-------CCEEEEEEECSSS-EEEECGGGCCSSCEEEESCSCSSSCCTTCEEECEEEEECSSTTC
T ss_pred CcCcEEEEEECC--C-------CCEEEEEEEecCC-EEEEhHHcCCCCCeEEeceeeccccCCCceeEeeeeeEEcCCCC
Confidence 457888886421 0 1237999999987 9999999997654444333221 11 1222222222
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeecccCC------
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIPG------ 291 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~~------ 291 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||+... ...+....+..+....+.
T Consensus 81 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 159 (238)
T 4e7n_A 81 NYTLWDKDIMLIRLDSPVKNSKHIAPFSLPS-SPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEF 159 (238)
T ss_dssp CCCSSSCCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGG
T ss_pred CCCCCCCcEEEEEeCCCccCCCceeeeeCCC-CCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhcccc
Confidence 46999999987543 466777754 445679999999997532 122333334333322221
Q ss_pred --cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhcC
Q 018198 292 --RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 292 --~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~g 355 (359)
.....+++.. ...|.|+|||||+ .+++++||.+++.... ...-+.+..+...+.|+++.++..
T Consensus 160 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~ 231 (238)
T 4e7n_A 160 ELPATSRTLCAGILEGGKDTCKGDSGGPLI-CNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGN 231 (238)
T ss_dssp CCCSCCSEEEEECTTCSCBCCTTCTTCEEE-ETTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTC
T ss_pred cCCCCCCeEEeCCCCCCCccCCCCCCcceE-ECCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcC
Confidence 1123456653 3578999999999 4789999999986411 123466778888999998887653
|
| >1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=121.17 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=114.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
-.|..|.|.. . ..|+|.+|+++ ||||+|||+. ..+.|++.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~-----~--------~~CgGsLIs~~-~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 74 (235)
T 1ton_A 11 SQPWQVAVIN-----E--------YLCGGVLIDPS-WVITAAHCYS--NNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPD 74 (235)
T ss_dssp SCTTEEEEES-----S--------SEEEEEEEETT-EEEECGGGCC--SCCEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred CcCcEEEEcc-----C--------CeEEEEEecCC-EEEEcHHhCC--CCcEEEeCcccccCCCCcceEEEEEEEEeCCC
Confidence 3577788753 1 26999999987 9999999996 344555532 1223333333332
Q ss_pred -----------------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeee
Q 018198 232 -----------------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISAL 285 (359)
Q Consensus 232 -----------------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~ 285 (359)
.+|||||+++.+.. .+.++.|.. ..+..|+.+++.||..... ..+....+..+
T Consensus 75 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 153 (235)
T 1ton_A 75 YIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPT-KEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLL 153 (235)
T ss_dssp CCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEE
T ss_pred CcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCC-CCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEe
Confidence 35999999987643 467788864 4467899999999975421 22333444433
Q ss_pred ecccC-----CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHh
Q 018198 286 DREIP-----GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 286 ~~~~~-----~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+ ......+++.. ...|.|+|||||+. +|.++||.+++..+.. ..-+....+...++|+++.++
T Consensus 154 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 232 (235)
T 1ton_A 154 SNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232 (235)
T ss_dssp CGGGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CHHHHHHHhcCcCCCCeEeeccCCCCCcCCCCCCccccEE-CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHc
Confidence 32222 11233566663 35789999999995 7899999999842221 234667888889999888765
Q ss_pred c
Q 018198 354 F 354 (359)
Q Consensus 354 ~ 354 (359)
.
T Consensus 233 ~ 233 (235)
T 1ton_A 233 E 233 (235)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=122.05 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=113.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+ .+.|.+.. +.....+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~ 76 (237)
T 1ao5_A 11 SQPWQVAVYYQK-----------EHICGGVLLDRN-WVLTAAHCYVD--QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPG 76 (237)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEEEETT-EEEECTTCCCS--SCEEEESCCBSSSCCSSCEECCEEEEEECTT
T ss_pred CcCCEEEEeeCC-----------CeEEEEEEeeCC-EEEECHHHCCC--CCEEEecccccccCCCCcEEEEEEEEEcCCC
Confidence 457788886421 237999999987 99999999963 44555532 1222233333332
Q ss_pred -----------------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeee
Q 018198 232 -----------------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISAL 285 (359)
Q Consensus 232 -----------------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~ 285 (359)
.+|||||+++.+.. .+.|+.|.. .....|+.+++.||..... ..+....+..+
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 155 (237)
T 1ao5_A 77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPT-KEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLL 155 (237)
T ss_dssp SCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCC-SCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEE
T ss_pred cCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCC-CCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEec
Confidence 67999999987643 467788864 4567899999999975321 22333333333
Q ss_pred ecc-----cCCcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 286 DRE-----IPGRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 286 ~~~-----~~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
... +.......+++.. ...|.|+|||||+. +|.++||.+++..+. ...-+.+..+...++|+++.++
T Consensus 156 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 234 (237)
T 1ao5_A 156 PNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234 (237)
T ss_dssp CHHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHH
T ss_pred ChhHhhhhhcccCCCCEEEEccCCCCCCCCCCCCcceEEE-CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence 211 1111223566664 35789999999995 789999999983221 1224667888888888887765
|
| >1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=121.50 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=117.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ... ....|+|.+|+++ ||||+|||+.+...+.|.+.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~--~~~-----~~~~CgGsLI~~~-~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (240)
T 1gvk_B 11 SWPSQISLQYRS--GSS-----WAHTCGGTLIRQN-WVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPY 82 (240)
T ss_dssp SCTTEEEEEEEE--TTE-----EEEEEEEEEEETT-EEEECGGGGCSCCCEEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred CcCEEEEEEecC--CCc-----cCceEEEEEeeCC-EEEECHHHCCCCcceEEEECCeecccCCCcceEEEEEEEEECCC
Confidence 457788886321 110 0237999999987 999999999887778888743 1234444444443
Q ss_pred --------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----
Q 018198 232 --------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP---- 290 (359)
Q Consensus 232 --------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~---- 290 (359)
.+|||||+++.+.. .+.++.|.... .+..|+.+++.||..... ..+....+..+....+
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 162 (240)
T 1gvk_B 83 WNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSS 162 (240)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTSTT
T ss_pred CCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhcccc
Confidence 56999999987643 45667775433 356899999999975321 1223332222221111
Q ss_pred --C-cccccEEEEc----ccCCCCCccceeecC-CC--eEEEEEeeecC-CC--cceeEEEEehHHHHHHHHHHHh
Q 018198 291 --G-RLIQGVIQID----ASVNLGNSGGPLLDS-SG--SLIGVNTFITS-GA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 --~-~~~~~~i~~~----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~-~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
+ .....+++.. ...|.|+|||||+-. +| .++||.+++.. +. ...-+.+..+...++++++.++
T Consensus 163 ~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~ 238 (240)
T 1gvk_B 163 YWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238 (240)
T ss_dssp TTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred ccCccCCcceEeecCCCCCcccCCCCcCceEEEECCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHHh
Confidence 1 1123566664 357899999999853 67 89999999742 21 1234567778888888887665
|
| >3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=121.65 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC-------cE-EEEEEEEEcC--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-------ST-FYAQVVGHDQ-- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g-------~~-~~~~v~~~d~-- 231 (359)
-.|.+|.|.... ...|+|.+|+++ ||||+|||+.....+.+...+. .. ...+.+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 78 (234)
T 3s69_A 11 EHRSLVAFFNST-----------GFFCSGTLINEE-WVLTAAHCDNTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKK 78 (234)
T ss_dssp SCTTEEEEECSS-----------CEEEEEEEEETT-EEEECGGGCCSSCEEEESCCCSSSCCTTCEEECEEEEEECTTCC
T ss_pred CCceEEEEeeCC-----------CeEEeEEEeeCC-EEEEchhhCCCCceEEecccccccccCCcceeeceEEEECCCcc
Confidence 357788886421 237999999987 9999999997654444332211 11 1223333232
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccC------C
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIP------G 291 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~------~ 291 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||..... .......+..+..... .
T Consensus 79 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 157 (234)
T 3s69_A 79 NDEVLDKDIMLIKLDSRVSNSEHIVPLSLPS-SPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL 157 (234)
T ss_dssp TTCTTSSCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC
T ss_pred CCCCCcccEEEEeeCCcCCCCCcceeeecCC-CCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccc
Confidence 46999999987543 456777754 4456799999999975321 1223333333322111 1
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHhcC
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~~g 355 (359)
......++.. ...|.|+|||||+. +++++||.+++..... ..-+.+..+...++|+++.++..
T Consensus 158 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~ 227 (234)
T 3s69_A 158 LTEYRTLCAGILEGGKDTCGGDSGGPLIC-NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN 227 (234)
T ss_dssp CTTSCEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred cCCcceEeccCCCCCCccCCCCCccceEE-cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence 1122456652 45789999999994 7899999999863221 23466788899999999887653
|
| >1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=120.07 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=113.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|...... . ...|+|.+|+++ ||||+|||+.+ .+.|++.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~~-~-------~~~CgGsLI~~~-~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1euf_A 11 SRPYMAFLLFKTSG-K-------SHICGGFLVRED-FVLTAAHCLGS--SINVTLGAHNIMERERTQQVIPVRRPIPHPD 79 (227)
T ss_dssp SCTTEEEEEEESSS-S-------EEEEEEEEEETT-EEEECGGGCCE--EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CcCCEEEEEEeCCC-C-------ceEEEEEEeeCC-EEEECHHHCCC--CcEEEEcccccCCCCCccEEEEEEEEEeCCC
Confidence 45788888653211 0 236999999987 99999999975 45666532 2334444444444
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC-----C
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP-----G 291 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~-----~ 291 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+....+ .
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 159 (227)
T 1euf_A 80 YNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKN 159 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCTT
T ss_pred CCCCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHhhcC
Confidence 46999999987543 46677776432 35789999999997532 12233333333322111 1
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.....+++.. ...+.|+|||||+. +|.++||++++.. ....-+...-+...++|+++.++
T Consensus 160 ~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~-~~~l~Gi~S~gc~-~~~~p~vyt~V~~y~~WI~~~~~ 224 (227)
T 1euf_A 160 YIPFTQICAGDPSKRKNSFSGDSGGPLVC-NGVAQGIVSYGRN-DGTTPDVYTRISSFLSWIHSTMR 224 (227)
T ss_dssp CCTTTEEEESCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECCT-TCCSCEEEEEGGGTHHHHHHHTC
T ss_pred cCCCcEEEccCCCCCCcccccCCCCceEE-CCEEEEEEEEeCC-CCCCCeEEEEHHHhHHHHHHHHh
Confidence 1223567663 23458999999994 7899999999732 21223566778888888877654
|
| >1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=122.64 Aligned_cols=182 Identities=17% Similarity=0.177 Sum_probs=116.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|...... .. ...|+|.+|+++ ||||+|||+.+...+.|.+.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~~-~~------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~ 82 (236)
T 1elt_A 11 SWPWQISLQYKSGS-SY------YHTCGGSLIRQG-WVMTAAHCVDSARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSG 82 (236)
T ss_dssp SSTTEEEEEEEETT-EE------EEEEEEEEEETT-EEEECHHHHSSCCCEEEEESCSBTTSCCSCCEEECEEEEEECTT
T ss_pred CCCCEEEEEEecCC-ce------eeEEEEEEEeCC-EEEECHHhhCCcCceEEEEccccCCCCCCCcEEEEEEEEEECCC
Confidence 45788888753211 00 136999999987 999999999887778888743 1234444444443
Q ss_pred --------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----
Q 018198 232 --------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP---- 290 (359)
Q Consensus 232 --------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~---- 290 (359)
.+|||||+++.+.. .+.++.|.... .+..|+.+++.||+.... ..+....+..+....+
T Consensus 83 y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 162 (236)
T 1elt_A 83 WNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSG 162 (236)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTSTT
T ss_pred CCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhcccc
Confidence 56999999987543 46677776433 356899999999985421 2233333322221111
Q ss_pred --C-cccccEEEEc---ccCCCCCccceeecC-CC--eEEEEEeeecC-CC--cceeEEEEehHHHHHHHHHH
Q 018198 291 --G-RLIQGVIQID---ASVNLGNSGGPLLDS-SG--SLIGVNTFITS-GA--FSGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 291 --~-~~~~~~i~~~---~~~~~G~SGgPl~~~-~G--~viGi~~~~~~-~~--~~~~~~aip~~~i~~~l~~l 351 (359)
+ .....+++.. ...|.|+|||||+-. +| .++||.+++.. +. ...-+.+..+...++++++.
T Consensus 163 ~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~ 235 (236)
T 1elt_A 163 WWGSTVKTTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI 235 (236)
T ss_dssp TTGGGSCTTEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred ccCCcCCcceEEecCCCCccCCCCCCCeeEEEECCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhh
Confidence 1 1123456654 357899999999954 66 89999999741 22 12345677788888887764
|
| >1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-13 Score=120.10 Aligned_cols=183 Identities=17% Similarity=0.157 Sum_probs=118.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecC---------CcEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSD---------QSTFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~---------g~~~~~~v~~~d 230 (359)
..|.+|.|.... . ....|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+..+-+..+
T Consensus 11 ~~Pw~v~l~~~~--~-------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 80 (238)
T 1ym0_A 11 EFPWQVSVRRKS--S-------DSHFCGGSIINDR-WVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVN 80 (238)
T ss_dssp SSTTEEEEEEGG--G-------TEEEEEEEEEETT-EEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEEC
T ss_pred ccCCEEEEEeCC--C-------CceEEEEEEeeCC-EEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEEC
Confidence 357888887532 0 1237999999987 999999999764 467777742 233444444444
Q ss_pred C-------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeecccC----
Q 018198 231 Q-------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP---- 290 (359)
Q Consensus 231 ~-------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~---- 290 (359)
+ .+|||||+++.+.. .+.|+.|........++.+++.||.... ...+....+..+....+
T Consensus 81 p~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 160 (238)
T 1ym0_A 81 ENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY 160 (238)
T ss_dssp TTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHC
T ss_pred CCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhh
Confidence 3 46999999987543 4677777654333378999999997532 22233333333322111
Q ss_pred -C-cccccEEEEc-------ccCCCCCccceeecC--CC--eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 291 -G-RLIQGVIQID-------ASVNLGNSGGPLLDS--SG--SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 -~-~~~~~~i~~~-------~~~~~G~SGgPl~~~--~G--~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
. .....+++.. ...|.|+|||||+-. +| .++||.+++..-....-+.+..+...++|+++.++.
T Consensus 161 ~~~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~~i~~ 237 (238)
T 1ym0_A 161 TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITDTITN 237 (238)
T ss_dssp TTSCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSSSSSCEEEEEHHHHHHHHHHHHHC
T ss_pred cccccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCCCCCCcEEEEHHHhHHHHHHHhcC
Confidence 1 1223566652 467899999999854 34 799999998632222346678888899999887653
|
| >1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=120.57 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+ ....|++.. ...+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~ 77 (234)
T 1orf_A 11 SRPYMVLLSLDR-----------KTICAGALIAKD-WVLTAAHCNLN-KRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77 (234)
T ss_dssp SSTTEEEEECSS-----------SCEEEEEEEETT-EEEECTTCCCC-TTCEEEESCSBSSSCCTTCEEECEEEEEECTT
T ss_pred CCCeEEEEccCC-----------ceEEEEEEeeCC-EEEEchhcCCC-CCceEEEeccccCcCCCceEEEEEEEEEcCCC
Confidence 457788886421 237999999987 99999999975 345566532 1234444444443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccCC--c--
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIPG--R-- 292 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~~--~-- 292 (359)
.+|||||+++.+.. .+.++.|.... .+..|+.+++.||.... ...+....+..+....+. .
T Consensus 78 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 157 (234)
T 1orf_A 78 YDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY 157 (234)
T ss_dssp CCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTT
T ss_pred CCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCcccc
Confidence 46999999987543 45677776433 34789999999997532 123334444333321111 0
Q ss_pred -ccc----cEEEEc-----ccCCCCCccceeecCCCeEEEEEeeec-CCCc--ceeEEEEehH-HHHHHHHHHHh
Q 018198 293 -LIQ----GVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAF--SGIGFALPID-TVRGIVDQLVK 353 (359)
Q Consensus 293 -~~~----~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~-~~~~--~~~~~aip~~-~i~~~l~~l~~ 353 (359)
... .+++.. ...|.|+|||||+- +|.++||.+++. .+.. ..-+....+. ..++|+++.++
T Consensus 158 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~ 231 (234)
T 1orf_A 158 NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231 (234)
T ss_dssp TTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEE-TTEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred ccCCccCCCEEEecCCCCCCcCCCCCCCCeEEE-CCEEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHH
Confidence 111 567764 35789999999994 789999999985 1211 1234556666 77788877654
|
| >1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-13 Score=118.03 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=119.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecC-----------CcEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSD-----------QSTFYAQVVG 228 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~-----------g~~~~~~v~~ 228 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.|++.. ...+..+-+.
T Consensus 10 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~ 77 (240)
T 1si5_H 10 NIGWMVSLRYRN-----------KHICGGSLIKES-WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLV 77 (240)
T ss_dssp CCTTEEEEEESS-----------SEEEEEEEEETT-EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEE
T ss_pred CCCeEEEEEeCC-----------CeEEEEEEeeCC-EEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEE
Confidence 357788886531 237999999987 999999999754 467777732 1233333333
Q ss_pred EcC-CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC----CCceeEeEEeeeecccCCc-------
Q 018198 229 HDQ-VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW----SFTCTTGVISALDREIPGR------- 292 (359)
Q Consensus 229 ~d~-~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~~~~------- 292 (359)
+++ .+|||||+++.+.. .+.++.|... ..+..|+.+++.||.... ...+....+..+....+..
T Consensus 78 ~~p~~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~ 157 (240)
T 1si5_H 78 YGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVT 157 (240)
T ss_dssp ECSSTTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSSCCCBCEEEEEEEECGGGTCC-------
T ss_pred cCCCCCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCCCCCeeEEEEEeecCHHHhhhhhcCCcc
Confidence 443 78999999987543 4667777643 346689999999997542 2233444444333322211
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCC---eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhcC
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSG---SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~g 355 (359)
....+++.. ...|.|+|||||+-.++ .++||.+++..-. ...-+.+..+...++|+++.++.-
T Consensus 158 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~ 229 (240)
T 1si5_H 158 LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY 229 (240)
T ss_dssp CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred CCCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhcc
Confidence 123456653 35789999999995432 7999999986221 123466788888999998877653
|
| >1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=120.43 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=113.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|..|.|.... ...|+|.+|+++ ||||+|||+.+. ..|.+.. .+.+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGsLIs~~-~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 76 (238)
T 1spj_A 11 SQPWQAALYHFS-----------TFQCGGILVHRQ-WVLTAAHCISDN--YQLWLGRHNLFDDENTAQFVHVSESFPHPG 76 (238)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCSS--EEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred CCCcEEEEEeCC-----------CeeEEEEEecCC-EEEEcHHhCCCC--ceEEEEeccccCCCCCceEEEEEEEEcCCC
Confidence 457788886421 237999999987 999999999753 4555521 1233333333332
Q ss_pred -----------------CCCEEEEEEcCCCC----CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEee
Q 018198 232 -----------------VNDLAVLHIDAPNH----ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISA 284 (359)
Q Consensus 232 -----------------~~DlAll~v~~~~~----~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~ 284 (359)
.+|||||+++.+.. .++++.|.. .....|+.+++.||.... ...+....+..
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~ 155 (238)
T 1spj_A 77 FNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPT-EEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKI 155 (238)
T ss_dssp SCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCS-SCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEE
T ss_pred ccccccccccccccccCCCCeEEEEECccccccCCceeeccCCC-CCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEee
Confidence 35999999987543 456777764 445689999999997532 12233333333
Q ss_pred eecccC-----CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHH
Q 018198 285 LDREIP-----GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 285 ~~~~~~-----~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~ 352 (359)
+....+ ......+++.. ...|.|+|||||+ .++.++||++++..+. ...-+....+...++|+++.+
T Consensus 156 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i 234 (238)
T 1spj_A 156 LPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM-CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234 (238)
T ss_dssp ECHHHHHHHCSSCCCTTEEEEECTTCSSBCCTTCTTCEEE-ETTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred cCHHHhhhhccCCCCCCeEEeeCCCCCCCCCCCCCCCcEE-EcCEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence 322111 11223566653 3578999999999 4789999999984221 123466778888888888876
Q ss_pred hc
Q 018198 353 KF 354 (359)
Q Consensus 353 ~~ 354 (359)
+.
T Consensus 235 ~~ 236 (238)
T 1spj_A 235 AE 236 (238)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-13 Score=118.63 Aligned_cols=178 Identities=19% Similarity=0.158 Sum_probs=114.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC----------CcEEEEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD----------QSTFYAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~----------g~~~~~~v~~~d~ 231 (359)
..|.+|.|.... ....|+|.+|+++ ||||+|||+... +.|++.. ...+...-+..++
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGtLIs~~-~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp 77 (227)
T 2psx_A 11 TQPWQAALLLRP----------NQLYCGAVLVHPQ-WLLTAAHCRKKV--FRVRLGHYSLSPVYESGQQMFQGVKSIPHP 77 (227)
T ss_dssp SCTTEEEEEETT----------TEEEEEEEEEETT-EEEECGGGCCSS--CEEEESCCBSSCCCCTTCEEEEEEEEEECT
T ss_pred CCCCEEEEEecC----------CCceEEEEEEcCC-EEEEhHHcCCCC--cEEEEeeeecccCCCCCcEEEEEEEEEeCC
Confidence 457788886421 1237999999987 999999999754 3444421 1234444344443
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeeccc-----C
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREI-----P 290 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~-----~ 290 (359)
.+|||||+++.+.. .+.|+.|. ...+..|+.+++.||..... ..+....+..+.... .
T Consensus 78 ~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~-~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~ 156 (227)
T 2psx_A 78 GYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS-SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYP 156 (227)
T ss_dssp TCCSSSCTTCCEEEEESSCCCCCSSSCCCCBC-SSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHST
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCCceeeeECC-CCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcC
Confidence 46999999987542 46778886 35567899999999975321 223333333332111 1
Q ss_pred CcccccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 291 GRLIQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 ~~~~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
......+++.. ...|.|+|||||+. ++.++||++++..+. ...-+....+...++|+++.++.
T Consensus 157 ~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 225 (227)
T 2psx_A 157 RQIDDTMFCAGDKAGRDSCQGDSGGPVVC-NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQA 225 (227)
T ss_dssp TTCCTTEEEECCSTTCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHH
T ss_pred CCCCCCEEcccCCCCCccCCCCCCcceee-CCEEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhc
Confidence 11223566663 35789999999994 689999999983221 12346677888888888887653
|
| >2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=119.94 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=114.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC-------CcEEEEEEEEEcC---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD-------QSTFYAQVVGHDQ--- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~-------g~~~~~~v~~~d~--- 231 (359)
..|.+|.|.. .. ...|+|.+|+++ ||||+|||+. ..+.|++.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~----~~-------~~~CgGtLI~~~-~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~ 76 (224)
T 2qxi_A 11 SHPWQVALLS----GN-------QLHCGGVLVNER-WVLTAAHCKM--NEYTVHLGSDTLGDRRAQRIKASKSFRHPGYS 76 (224)
T ss_dssp SCTTEEEEEE----TT-------EEEEEEEEEETT-EEEECGGGCC--SCEEEEESCSBTTCTTSEEEEECEEEECTTCC
T ss_pred CCCCEEEEee----CC-------CeEEEEEEecCC-EEEEhHHcCC--CCcEEEEeeeecCCCccEEEEEEEEEECCCCC
Confidence 4577888831 11 126999999987 9999999995 456676642 2234444344443
Q ss_pred ----CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeecccC-----Ccc
Q 018198 232 ----VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP-----GRL 293 (359)
Q Consensus 232 ----~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~-----~~~ 293 (359)
.+|||||+++.+.. .+.++.|... ....|+.+++.||+... ...+....+..+....+ ...
T Consensus 77 ~~~~~~DIALl~L~~~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~ 155 (224)
T 2qxi_A 77 TQTHVNDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLL 155 (224)
T ss_dssp TTTCTTCCEEEECSSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGGGC
T ss_pred CCCCcCcEEEEEeCCCCcCCCceeeEECCCC-CCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcCcC
Confidence 36999999987643 4677778643 34689999999997542 12233333333321111 111
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...+++.. ...|.|+|||||+. +|+++||.+++..+. ...-+.+..+...+.|+++.++.
T Consensus 156 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 222 (224)
T 2qxi_A 156 ENSMLCAGIPDSKKNACNGDSGGPLVC-RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK 222 (224)
T ss_dssp CTTEEEEECTTCCCBCCTTCTTCEEEE-TTEEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred CCCeEEecCCCCCCccCCCCccccEEE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence 23556653 35789999999995 789999999983221 12345677888888888887653
|
| >2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=121.02 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=113.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC--------cEEEEEEEEEcC--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ--------STFYAQVVGHDQ-- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g--------~~~~~~v~~~d~-- 231 (359)
..|.+|.|.. . ...|+|.+|+++ ||||+|||+.+...+.+...+. ..+..+-+..++
T Consensus 11 ~~Pw~v~l~~----~--------~~~CgGsLIs~~-~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y 77 (231)
T 2aiq_A 11 EHRFLALVYA----N--------GSLCGGTLINQE-WVLTARHCDRGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTR 77 (231)
T ss_dssp SCTTEEEEEE----T--------TEEEEEEECSSS-EEEECGGGCCSSCEEEESCSCTTSCCTTCEEECEEEEECCSSCC
T ss_pred CCCeEEEEEc----C--------CCeEEEEEEeCC-EEEEcHHcCCCCCEEEEecccccccCCCceEEEEEEEEEECCCC
Confidence 4577888862 1 126999999987 9999999998744333322211 123333333333
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC------CCceeEeEEeeeecccC----Ccc
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP----GRL 293 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~----~~~ 293 (359)
.+|||||+++.+.. .+.++.|.. .....|+.+++.||+... ...+....+..+..... ...
T Consensus 78 ~~~~~~~DIALl~L~~~v~~~~~v~picL~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 156 (231)
T 2aiq_A 78 NDTIWDKDIMLIRLNRPVRNSAHIAPLSLPS-NPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGL 156 (231)
T ss_dssp SSSTTTTCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC
T ss_pred CCCCCCCCEEEEEecCCCCCCCcEEeeECCC-CCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcCC
Confidence 46999999987643 466777864 344679999999998532 12233333333322111 112
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...+++.. ...|.|+|||||+. +|+++||.+++..+. ...-+.+..+...++|+++.++.
T Consensus 157 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 223 (231)
T 2aiq_A 157 AATTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG 223 (231)
T ss_dssp CSSEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred CcCcEEeccCCCCCcccCCcCCCcEEE-CCEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence 23556653 35789999999995 689999999984221 12246678888899999887764
|
| >2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-13 Score=119.74 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=116.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC-eEEEEecC------CcEEEEEEEEEc----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS-TVKVSFSD------QSTFYAQVVGHD---- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~-~~~v~~~~------g~~~~~~v~~~d---- 230 (359)
..|.+|.|... . ...|+|.+|+++ ||||+|||+.+.. .+.|.+.. +..+..+-+..+
T Consensus 11 ~~Pw~v~l~~~---~--------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~ 78 (240)
T 2zgc_A 11 SRPYMASLQRN---G--------SHLCGGVLVHPK-WVLTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYK 78 (240)
T ss_dssp SSTTEEEEEET---T--------EEEEEEEEEETT-EEEECGGGGCSCGGGEEEEESCSBSSSCCEEEEEEEEEECTTCB
T ss_pred CcCcEEEEEeC---C--------CeEEEEEEEcCC-EEEEcHHhcCCCCCCEEEEecccccCCCCeEEEEEEEEECCCCC
Confidence 35788888641 1 237999999987 9999999997653 56777642 234444434333
Q ss_pred ----CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeeccc-------C
Q 018198 231 ----QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREI-------P 290 (359)
Q Consensus 231 ----~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~-------~ 290 (359)
..+|||||+++.+.. .+.|+.|.... .+..|+.+++.||+.... ..+....+..+.... .
T Consensus 79 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 158 (240)
T 2zgc_A 79 PVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWN 158 (240)
T ss_dssp CTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTT
T ss_pred CCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccC
Confidence 346999999987543 46777776433 357899999999975321 223333333332111 1
Q ss_pred CcccccEEEEc-----ccCCCCCccceeecCCC--eEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHhcC
Q 018198 291 GRLIQGVIQID-----ASVNLGNSGGPLLDSSG--SLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 291 ~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G--~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~~g 355 (359)
......+++.. ...|.|+|||||+- ++ .++||++++..+.. ..-+.+..+...++|+++.++..
T Consensus 159 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~ 231 (240)
T 2zgc_A 159 GSLSPSMVCLAADSKDQAPCKGDSGGPLVC-GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS 231 (240)
T ss_dssp TCCCTTEEEEECSSTTCBCCTTCTTCEEEE-TTTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCCC
T ss_pred CCCCCceEeeccCCCCCccCCCCccCeeEE-CCCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhhc
Confidence 11223566653 35789999999995 44 89999999842211 12355677888889988877653
|
| >2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=120.33 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=116.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC------cEEEEEEEEEcC----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ------STFYAQVVGHDQ---- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g------~~~~~~v~~~d~---- 231 (359)
..|..|.|....... ....|+|.+|+++ ||||+|||+.+...+.|.+... ..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~~~-------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~ 82 (230)
T 2hlc_A 11 LFPYQAGLDITLQDQ-------RRVWCGGSLIDNK-WILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNP 82 (230)
T ss_dssp TSTTEEEEEEEETTS-------CEEEEEEEEEETT-EEEECHHHHTTEEEEEEEESCSBTTCCSEEEECSEEEECTTCBT
T ss_pred CCCcEEEEEEEecCC-------CCEEEEEEEeeCC-EEEECHHHCCCCcceEEEEeeeecCCCCeEEEEEEEEECCCCCC
Confidence 457888887542211 1247999999987 9999999998877777877432 233333334443
Q ss_pred ---CCCEEEEEEcCCCC---CccceEecCCC---CCCCCCEEEEEecCCCCC--CceeEeEEeeeecc-----cCC-ccc
Q 018198 232 ---VNDLAVLHIDAPNH---ELRPIHVSVSA---DLRVGKKIYAIGHPLGWS--FTCTTGVISALDRE-----IPG-RLI 294 (359)
Q Consensus 232 ---~~DlAll~v~~~~~---~~~~~~l~~~~---~~~~G~~v~~iG~p~~~~--~~~~~G~vs~~~~~-----~~~-~~~ 294 (359)
.+|||||+++ +.. .+.|+.|.... ....|+.+++.||..... ..+....+..+... ... ...
T Consensus 83 ~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~ 161 (230)
T 2hlc_A 83 DTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIV 161 (230)
T ss_dssp TTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCCCBCEEEEEEEECHHHHHTTSCTTSSC
T ss_pred CCccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCCceeEEEEEEEeCHHHhhhhhCCCccc
Confidence 4699999998 432 46777775433 245789999999976432 22333333322211 111 122
Q ss_pred ccEEEEc----ccCCCCCccceeecC-CCeEEEEEeeec-CCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 295 QGVIQID----ASVNLGNSGGPLLDS-SGSLIGVNTFIT-SGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 295 ~~~i~~~----~~~~~G~SGgPl~~~-~G~viGi~~~~~-~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..+++.. ...|.|+|||||+-. ++.++||.+++. .+. ...-.....+...++|+++.++
T Consensus 162 ~~~~Ca~~~~~~~~C~GDSGgPl~~~~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~ 227 (230)
T 2hlc_A 162 ESTICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG 227 (230)
T ss_dssp TTEEEECCTTSCBCCTTCTTCEEEEGGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHC
T ss_pred CCeEEecCCCCCCcCCCCCCCeeEECcCCEEEEEEEEeCCCCCCCCCCCEEEEhHHhHHHHHHhhC
Confidence 3556653 357899999999943 459999999975 122 1223456778888888887654
|
| >3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=122.52 Aligned_cols=183 Identities=16% Similarity=0.232 Sum_probs=116.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC--CCeEEEEecCC--------cEEEEEEEEEc-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG--ASTVKVSFSDQ--------STFYAQVVGHD- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~--~~~~~v~~~~g--------~~~~~~v~~~d- 230 (359)
..|.+|.|...... ....|+|.+|+++ ||||+|||+.+ ...+.|.+... .....+.+..+
T Consensus 10 ~~Pw~v~l~~~~~~--------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~ 80 (228)
T 3h7o_A 10 QVPWTVAVRTYPGE--------ESLTCGGAILSQW-FVLTAAHCVFDQKPETIVIQYESTNLWEDPGKSDPYVSHVYLSF 80 (228)
T ss_dssp GSTTEEEEEECGGG--------CCEEEEEEESSSS-EEEECHHHHTTSCGGGCEEEESCSBTTTBCCEEECCEEEEEESS
T ss_pred CCCeEEEEeecCCC--------CceEeeeEEeeCC-EEEEcHHhcccCCCCcEEEEecccccccCCCceeeeEEEEEccc
Confidence 46788888753211 0126999999987 99999999954 34566666321 11222222222
Q ss_pred -----CCCCEEEEEEcCCCC----CccceEecCCC-CCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC-----
Q 018198 231 -----QVNDLAVLHIDAPNH----ELRPIHVSVSA-DLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP----- 290 (359)
Q Consensus 231 -----~~~DlAll~v~~~~~----~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~----- 290 (359)
..+|||||+++.+.. .+.++.|.... .+..|+.+++.||...... .+....+..+....+
T Consensus 81 y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 160 (228)
T 3h7o_A 81 YRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG 160 (228)
T ss_dssp CBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHHT
T ss_pred cCCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHhc
Confidence 346999999987643 45677776433 2678999999999754321 233333333332111
Q ss_pred C-cccccEEEEc---ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 291 G-RLIQGVIQID---ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 ~-~~~~~~i~~~---~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
. .....+++.. ...|.|+|||||+. +++++||.+++.......-+....+...++|+++.++.
T Consensus 161 ~~~~~~~~~Ca~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~p~vyt~v~~~~~WI~~~i~~ 227 (228)
T 3h7o_A 161 PIFLSLQVFCAQKVGVSLESGDAGDPTVQ-QDTLVGVAAYFPKRPEGAPEVFTKVGSYVSWIQDIIKK 227 (228)
T ss_dssp TSCCCSSEEEEECTTCCCCGGGTTCEEEE-TTEEEEEECCCTTCCTTCCEEEEEGGGTHHHHHHHHTT
T ss_pred CccCCceEEecCCCCCcCCCCCCCCccee-cCeEEEEEeecCcCCCCCCcEEEEHHHHHHHHHHHhhc
Confidence 1 1123455553 45788999999995 78999999998642223346678888899999888764
|
| >1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=122.22 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=114.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC--CCeEEEEecC--------CcEEEEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG--ASTVKVSFSD--------QSTFYAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~--~~~~~v~~~~--------g~~~~~~v~~~d~ 231 (359)
..|.+|.|..... . ....|+|.+|+++ ||||+|||+.+ ...+.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~--~------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp 81 (241)
T 1m9u_A 11 EFPWQLSQQRQSG--S------WSHSCGASLLSST-SALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMHE 81 (241)
T ss_dssp SSTTEEEEEEESS--S------EEEEEEEEECSSS-EEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEECT
T ss_pred CcCeEEEEEecCC--c------eeeeeEEEEEeCC-EEEecHHhCCCCCcceEEEEEEeecCCCCCCceEEEEEEEEeCC
Confidence 4577888875321 1 1237999999987 99999999976 3567777732 2345555555554
Q ss_pred CC---------CEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC---
Q 018198 232 VN---------DLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP--- 290 (359)
Q Consensus 232 ~~---------DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~--- 290 (359)
++ |||||+++.+.. .+.++.|... .....|+.+++.||..... ..+....+..+....+
T Consensus 82 ~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (241)
T 1m9u_A 82 NYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA 161 (241)
T ss_dssp TTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred CcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhhh
Confidence 43 999999987643 4677777654 3233899999999975321 2333333333321111
Q ss_pred --C--c--ccccEEEEc-----ccCCCCCccceeecCCC--eEEEEEee--ec-CCCc--ceeEEEEehHHHHHHHHHH
Q 018198 291 --G--R--LIQGVIQID-----ASVNLGNSGGPLLDSSG--SLIGVNTF--IT-SGAF--SGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 291 --~--~--~~~~~i~~~-----~~~~~G~SGgPl~~~~G--~viGi~~~--~~-~~~~--~~~~~aip~~~i~~~l~~l 351 (359)
. . ....+++.. ...|.|+|||||+-.+| .++||.++ .. .+.. ..-+....+...++|+++.
T Consensus 162 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~~ 240 (241)
T 1m9u_A 162 MVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240 (241)
T ss_dssp HTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEESSSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred hcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeCCCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhhh
Confidence 1 1 223567764 25789999999996445 89999999 32 1111 2245677788888877753
|
| >1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-13 Score=120.45 Aligned_cols=182 Identities=16% Similarity=0.210 Sum_probs=116.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|..|.|.... ....|+|.+|+++ ||||+|||+.+...+.|++.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGsLI~~~-~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (250)
T 1aut_C 11 DSPWQVVLLDSK----------KKLACGAVLIHPS-WVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPN 79 (250)
T ss_dssp SCTTEEEEECTT----------SCEEEEEEEEETT-EEEECGGGSSSCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTT
T ss_pred CCCCEEEEecCC----------CceEEEEEEeeCC-EEEEChHHcCCCCceEEEEcccccCCCCCccEEEEEEEEEECCC
Confidence 357778775311 1237999999987 999999999887777777743 1234444444454
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC-----CCCCCCEEEEEecCCCCCC----------ceeEeEEeeeec
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA-----DLRVGKKIYAIGHPLGWSF----------TCTTGVISALDR 287 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~-----~~~~G~~v~~iG~p~~~~~----------~~~~G~vs~~~~ 287 (359)
.+|||||+++.+.. .+.|+.|.... ....|+.+++.||+..... .+....+..+..
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~ 159 (250)
T 1aut_C 80 YSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPH 159 (250)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECH
T ss_pred CCCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecH
Confidence 36999999987643 35667775321 2357999999999753211 223333332221
Q ss_pred c-----cCCcccccEEEEc-----ccCCCCCccceeecC-CCe--EEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 288 E-----IPGRLIQGVIQID-----ASVNLGNSGGPLLDS-SGS--LIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 288 ~-----~~~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G~--viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
. ........+++.. ...|.|+|||||+.. +|+ ++||++++..-. ...-+....+...+.++++.++
T Consensus 160 ~~C~~~~~~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~ 239 (250)
T 1aut_C 160 NECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239 (250)
T ss_dssp HHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred HHhhHHhccCCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence 1 1111223567763 357899999999953 564 999999986321 1234567888888888888765
Q ss_pred c
Q 018198 354 F 354 (359)
Q Consensus 354 ~ 354 (359)
.
T Consensus 240 ~ 240 (250)
T 1aut_C 240 D 240 (250)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-13 Score=117.78 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=115.3
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----CCeEEEEecC-----------CcEEEEEEE
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----ASTVKVSFSD-----------QSTFYAQVV 227 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----~~~~~v~~~~-----------g~~~~~~v~ 227 (359)
.|.+|.|.... ....|+|.+|+++ ||||+|||+.+ ...+.|++.. ...+...-+
T Consensus 9 ~Pw~v~l~~~~----------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i 77 (234)
T 2asu_B 9 SPWTVSLRNRQ----------GQHFCGGSLVKEQ-WILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM 77 (234)
T ss_dssp CTTEEEEECTT----------SCEEEEEEEEETT-EEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred CcceEEeeccC----------CCEEEEEEEEeCC-EEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence 57778876421 1237999999987 99999999964 3456676632 123444334
Q ss_pred EEc-CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC----CCceeEeEEeeeeccc-----CCcc
Q 018198 228 GHD-QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW----SFTCTTGVISALDREI-----PGRL 293 (359)
Q Consensus 228 ~~d-~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~-----~~~~ 293 (359)
..+ ..+|||||+++.+.. .+.++.|.... .+..|+.+++.||.... ...+....+..+.... ....
T Consensus 78 ~~hp~~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~ 157 (234)
T 2asu_B 78 VCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRV 157 (234)
T ss_dssp EECSTTCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSSCTTBCEEEEEEEECHHHHHHHTTTCC
T ss_pred ecCCCCCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCCCCccceEEEeeEEcHHHcccccCCcc
Confidence 444 368999999987643 46777776433 35689999999997542 2233443343332211 1122
Q ss_pred cccEEEEc-----ccCCCCCccceeecCC-C--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSS-G--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~-G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
....++.. ...|.|+|||||+-.. | .++||.+++..-. ...-+.+..+...++|+++.++.
T Consensus 158 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 227 (234)
T 2asu_B 158 RESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL 227 (234)
T ss_dssp CTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC--
T ss_pred CcceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhc
Confidence 23566663 3578999999999542 3 7999999976221 12346677888888888887654
|
| >3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=115.46 Aligned_cols=164 Identities=13% Similarity=0.184 Sum_probs=106.9
Q ss_pred eEEEEEEeCCCEEEecccccCCC---CeEEEEecC-------CcEEEEEEEEEcCC-------CCEEEEEEcCCCCCccc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD-------QSTFYAQVVGHDQV-------NDLAVLHIDAPNHELRP 249 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~-------g~~~~~~v~~~d~~-------~DlAll~v~~~~~~~~~ 249 (359)
.|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+...-+..+++ +|||||+++.+. .+++
T Consensus 21 ~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v-~~~~ 98 (224)
T 3beu_A 21 GCGGALYAQD-IVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI-NQPT 98 (224)
T ss_dssp TEEEEEEETT-EEEECGGGSCSSEEBCCCEEEESCSBTTCTTCEEEEEEEEEECTTCCCGGGSCCCEEEEESSCC-CSCC
T ss_pred ceeEEEeeCC-EEEEChhhcCCCCCcceEEEEeeEeecCCCCceEEEEEEEEeCCCcCCCcCCCCEEEEEeCCCC-CCCc
Confidence 4999999987 999999999764 345666632 23444444445543 599999999865 4677
Q ss_pred eEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC------CcccccEEEEc-----ccCCCCCcccee
Q 018198 250 IHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP------GRLIQGVIQID-----ASVNLGNSGGPL 313 (359)
Q Consensus 250 ~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~------~~~~~~~i~~~-----~~~~~G~SGgPl 313 (359)
+++.... ...+..+++.||..... ..+....+..+....+ ......+++.. ...|.|+|||||
T Consensus 99 i~l~~~~-~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl 177 (224)
T 3beu_A 99 LKIATTT-AYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPM 177 (224)
T ss_dssp CEECCSS-TTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSSCCCGGGEEEECCSSSSCBCCTTCTTCEE
T ss_pred ccccccc-ccCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCCccCCCCeEEeccCCCCCcCCCCcCCCee
Confidence 7876433 34566999999975422 2233333333321111 11223566663 357899999999
Q ss_pred ecCC--C--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 314 LDSS--G--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 314 ~~~~--G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
+..+ | .++||.+++..-. ...-+.+..+...++++++.++
T Consensus 178 ~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~ 222 (224)
T 3beu_A 178 FRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222 (224)
T ss_dssp EEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHT
T ss_pred EEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence 9543 3 6999999986321 1234667888999999988765
|
| >2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=115.96 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC-----CcEEEEEEEEEcC--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD-----QSTFYAQVVGHDQ-- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~-----g~~~~~~v~~~d~-- 231 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.+.+.. +.....+-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAhC~~~~~~~~~~~v~~G~~~~~~~~~~~v~~i~~hp~y 78 (232)
T 2oq5_A 11 EWPWQASLQWDG-----------SHRCGATLINAT-WLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKY 78 (232)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGGSSCCCGGGEEEEESSBSTTCSEEEEEEEEEECTTC
T ss_pred CCCeeEEEEeCC-----------CeeEEEEEEcCC-EEEECHHHcCCCCCCceEEEEEeeEECCCceEEeEEEEEeCCCC
Confidence 357788886421 237999999987 999999999753 356676632 2334444444443
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC-------
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP------- 290 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~------- 290 (359)
.+|||||+++.+.. .+.++.|.... .+..|+.+++.||.... ...+....+..+....+
T Consensus 79 ~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 158 (232)
T 2oq5_A 79 KHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYN 158 (232)
T ss_dssp CTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTT
T ss_pred CCCCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccC
Confidence 46999999987643 46677776433 45679999999997532 12333333433322111
Q ss_pred CcccccEEEEc-----ccCCCCCccceeecCC--C--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHH
Q 018198 291 GRLIQGVIQID-----ASVNLGNSGGPLLDSS--G--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 ~~~~~~~i~~~-----~~~~~G~SGgPl~~~~--G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~ 352 (359)
......+++.. ...|.|+|||||+..+ | .++||.+++..-.. ..-+.+.-+...++|+++..
T Consensus 159 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 230 (232)
T 2oq5_A 159 DAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230 (232)
T ss_dssp TCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHH
T ss_pred CccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHh
Confidence 11223567763 3578999999999533 3 69999999863211 23456677888888887754
|
| >3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-13 Score=118.50 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=116.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
-.|.+|.|........ ....|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~~~~~~------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~ 83 (247)
T 3mhw_U 11 NQPWFAAIYRRHRGGS------VTYVCGGSLISPC-WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLIL 83 (247)
T ss_dssp GSTTEEEEEEECTTSC------EEEEEEEEEEETT-EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEecCCCc------cceEEEEEEEeCC-EEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEEEEE
Confidence 4678888865432111 0236999999987 999999999653 346676632 22344444444
Q ss_pred cCC---------CCEEEEEEcCC-------CCCccceEecCC-CCCCCCCEEEEEecCCCCC------CceeEeEEeeee
Q 018198 230 DQV---------NDLAVLHIDAP-------NHELRPIHVSVS-ADLRVGKKIYAIGHPLGWS------FTCTTGVISALD 286 (359)
Q Consensus 230 d~~---------~DlAll~v~~~-------~~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~ 286 (359)
++. +|||||+++.+ ...+.++.|... ..+..|+.+++.||..... ..+....+..+.
T Consensus 84 hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~ 163 (247)
T 3mhw_U 84 HKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLIS 163 (247)
T ss_dssp CTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEEC
T ss_pred CCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEEC
Confidence 433 59999999865 124667777543 4567799999999975321 223333333332
Q ss_pred cccC-------CcccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHH
Q 018198 287 REIP-------GRLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQ 350 (359)
Q Consensus 287 ~~~~-------~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~ 350 (359)
...+ ......+++.. ...|.|+|||||+-. +| .++||.+++..-. ...-+.+..+...++|+++
T Consensus 164 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~ 243 (247)
T 3mhw_U 164 HRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243 (247)
T ss_dssp HHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHHHH
T ss_pred hHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 2111 11223556653 357899999999954 44 5999999986322 1234667788888888887
Q ss_pred HHh
Q 018198 351 LVK 353 (359)
Q Consensus 351 l~~ 353 (359)
.++
T Consensus 244 ~~~ 246 (247)
T 3mhw_U 244 HTK 246 (247)
T ss_dssp HTT
T ss_pred Hhc
Confidence 664
|
| >3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-13 Score=117.60 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--------CeEEEEecC----------CcEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--------STVKVSFSD----------QSTFY 223 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--------~~~~v~~~~----------g~~~~ 223 (359)
..|.+|.|.... ....|+|.+|+++ ||||+|||+.+. ..+.+.+.. ...+.
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGtLI~~~-~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~ 79 (241)
T 3ncl_A 11 EWPWQVSLHALG----------QGHICGASLISPN-WLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERR 79 (241)
T ss_dssp SSTTEEEEEETT----------TEEEEEEEECSSS-EEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEE
T ss_pred CCCcEEEEEcCC----------CceEEEEEEeeCC-EEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEE
Confidence 457788886421 1136999999987 999999999543 346666631 23344
Q ss_pred EEEEEEcC-------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeec
Q 018198 224 AQVVGHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDR 287 (359)
Q Consensus 224 ~~v~~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~ 287 (359)
.+-+..++ .+|||||+++.+.. .+.++.|... ..+..|+.+++.||..... ..+....+..+..
T Consensus 80 v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 159 (241)
T 3ncl_A 80 LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQ 159 (241)
T ss_dssp EEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCH
T ss_pred EEEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECH
Confidence 55455554 46999999987543 4667777543 3356899999999975321 1233333333322
Q ss_pred ccC-----CcccccEEEEc-----ccCCCCCccceeec--CCCe--EEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHH
Q 018198 288 EIP-----GRLIQGVIQID-----ASVNLGNSGGPLLD--SSGS--LIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 288 ~~~-----~~~~~~~i~~~-----~~~~~G~SGgPl~~--~~G~--viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~ 352 (359)
..+ ......+++.. ...|.|+|||||+. .+|+ ++||.+++..-.. ..-+.+..+...++|+++..
T Consensus 160 ~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~ 239 (241)
T 3ncl_A 160 TTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239 (241)
T ss_dssp HHHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHH
T ss_pred HHhhhhcccCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 111 12223556653 35789999999983 3554 8999999863221 23456777888888887754
|
| >1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=118.46 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=117.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC----------cEEEEEEEEEc
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ----------STFYAQVVGHD 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g----------~~~~~~v~~~d 230 (359)
...|.+|.|....... ....|+|.+|+++ ||||+|||+.+...+.|.+... ..+..+-+..+
T Consensus 23 ~~~Pw~v~l~~~~~~~-------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~H 94 (251)
T 1pyt_D 23 HSWPWQISLQYLRDNT-------WRHTCGGTLITPN-HVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVH 94 (251)
T ss_dssp TSSTTEEEEEEEETTE-------EEEEEEEEEEETT-EEEECGGGCCTTCCEEEEESCSBTTCSCCSSCEEEEEEEEEEC
T ss_pred CCCCceEEEEEEcCCC-------cceEEEeEEecCC-EEEECHHHhCCCceEEEEEcccccccCCCCCcEEEEEEEEEEC
Confidence 3467888886532111 1236999999987 9999999998877788887421 23444444444
Q ss_pred C-------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----
Q 018198 231 Q-------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP---- 290 (359)
Q Consensus 231 ~-------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~---- 290 (359)
+ .+|||||+++.+.. .+.|+.|.... .+..++.+++.||..... ..+....+..+....+
T Consensus 95 p~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 174 (251)
T 1pyt_D 95 EKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174 (251)
T ss_dssp TTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHHTSTT
T ss_pred CCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHcchhh
Confidence 3 46999999987543 46677776433 356789999999975321 1222233322221111
Q ss_pred ---CcccccEEEEc----ccCCCCCccceeecC-CC--eEEEEEeeecC-CC--cceeEEEEehHHHHHHHHHHHh
Q 018198 291 ---GRLIQGVIQID----ASVNLGNSGGPLLDS-SG--SLIGVNTFITS-GA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 ---~~~~~~~i~~~----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~-~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
......+++.. ...|.|+|||||+-. +| .++||++++.. +. ...-+.+..+...+.|+++.++
T Consensus 175 ~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 250 (251)
T 1pyt_D 175 WWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ 250 (251)
T ss_dssp TTTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred ccCCCcCCCeEEecCCCCCccCCCCCCCceEEEECCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence 11223566664 257899999999954 45 69999999851 22 1223566778888888877653
|
| >3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=117.19 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=116.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----------------CCeEEEEecC-------
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----------------ASTVKVSFSD------- 218 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----------------~~~~~v~~~~------- 218 (359)
..|.+|.|.... ....|+|.+|+++ ||||+|||+.+ ...+.|.+..
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~ 79 (251)
T 3gov_B 11 TTPWIAMLSHLN----------GQPFCGGSLLGSS-WIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSD 79 (251)
T ss_dssp SCTTEEEEEETT----------CCEEEEEEEETTT-EEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCC
T ss_pred CcCeEEEEeccC----------CCeeEEEEEecCC-EEEECHhhccccccccccccccccccccccEEEEecceeccCCC
Confidence 457788886421 1237999999987 99999999954 2456777643
Q ss_pred --CcEEEEEEEEEcCC-------CCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC----CCceeEeEE
Q 018198 219 --QSTFYAQVVGHDQV-------NDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW----SFTCTTGVI 282 (359)
Q Consensus 219 --g~~~~~~v~~~d~~-------~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~----~~~~~~G~v 282 (359)
+..+..+-+..++. +|||||+++.+.. .+.|+.|... ....|+.+++.||.... ...+....+
T Consensus 80 ~~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~-~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~ 158 (251)
T 3gov_B 80 ENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEG-PQQEGAMVIVSGWGKQFLQRFPETLMEIEI 158 (251)
T ss_dssp SSCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSS-CCCTTCEEEEEECSCCTTSCCCSBCEEEEE
T ss_pred CcceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCC-CCCCCCEEEEEcCCCCCCCCCCccceEEee
Confidence 23344444555544 6999999987542 4667788543 44789999999997542 222333333
Q ss_pred eeeecccC--------CcccccEEEEc-----ccCCCCCccceeecC---CC--eEEEEEeeecCCCc-ceeEEEEehHH
Q 018198 283 SALDREIP--------GRLIQGVIQID-----ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAF-SGIGFALPIDT 343 (359)
Q Consensus 283 s~~~~~~~--------~~~~~~~i~~~-----~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~-~~~~~aip~~~ 343 (359)
..+....+ ......+++.. ...|.|+|||||+-. +| .++||.+++..-.. ..-+.+..+..
T Consensus 159 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~ 238 (251)
T 3gov_B 159 PIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHH 238 (251)
T ss_dssp EEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTT
T ss_pred EEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHH
Confidence 33321111 11223567763 357899999999853 34 69999999863221 22366778888
Q ss_pred HHHHHHHHHh
Q 018198 344 VRGIVDQLVK 353 (359)
Q Consensus 344 i~~~l~~l~~ 353 (359)
.++|+++.++
T Consensus 239 ~~~WI~~~~~ 248 (251)
T 3gov_B 239 NKDWIQRVTG 248 (251)
T ss_dssp THHHHHHHHC
T ss_pred hHHHHHHHhc
Confidence 8888888764
|
| >2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=117.34 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=116.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|.+|.|... ...|+|.+|+++ ||||+|||+.+. ..+.|++.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~------------~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~ 77 (248)
T 2r0l_A 11 SHPWLAAIYIG------------DSFCAGSLVHTC-WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIP 77 (248)
T ss_dssp SSTTEEEEEET------------TEEEEEEEEETT-EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEE
T ss_pred CCCeEEEEEcC------------CceEEEEEEcCC-EEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEe
Confidence 45777888642 136999999987 999999999764 467777743 12333333333
Q ss_pred c--------CCCCEEEEEEcCC----C---CCccceEecCC-CCCCCCCEEEEEecCCCC------CCceeEeEEeeeec
Q 018198 230 D--------QVNDLAVLHIDAP----N---HELRPIHVSVS-ADLRVGKKIYAIGHPLGW------SFTCTTGVISALDR 287 (359)
Q Consensus 230 d--------~~~DlAll~v~~~----~---~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~ 287 (359)
+ ..+|||||+++.+ . ..+.++.|... ..+..|+.+++.||.... ...+....+..+..
T Consensus 78 hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~ 157 (248)
T 2r0l_A 78 YTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVAD 157 (248)
T ss_dssp CTTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCH
T ss_pred CCccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCH
Confidence 3 2469999999876 1 24677777643 345689999999997532 22334444433322
Q ss_pred ccC------C-cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHH
Q 018198 288 EIP------G-RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 288 ~~~------~-~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l 351 (359)
..+ + .....+++.. ...|.|+|||||+.. +| .++||++++..-. ...-+.+..+...+.|+++.
T Consensus 158 ~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 237 (248)
T 2r0l_A 158 HKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237 (248)
T ss_dssp HHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred HHhCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHH
Confidence 111 1 1123567763 357899999999954 45 6999999986221 12346678888888888887
Q ss_pred Hhc
Q 018198 352 VKF 354 (359)
Q Consensus 352 ~~~ 354 (359)
++.
T Consensus 238 ~~~ 240 (248)
T 2r0l_A 238 IRP 240 (248)
T ss_dssp HC-
T ss_pred hcC
Confidence 654
|
| >1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-12 Score=116.33 Aligned_cols=186 Identities=14% Similarity=0.093 Sum_probs=116.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|..|.|........ .....|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~~~~~~-----~~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~ 84 (252)
T 1rtf_B 11 SHPWQAAIFAKHRRSP-----GERFLCGGILISSC-WILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIV 84 (252)
T ss_dssp GSTTEEEEEEEC---------CEEEEEEEEECSSS-EEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEE
T ss_pred CcCCEEEEEEecCCCC-----CCCEEEEEEEEeCC-EEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEe
Confidence 3578888875422110 01237999999987 999999999753 457777732 23344444444
Q ss_pred cC-------CCCEEEEEEcCC----C---CCccceEecCCC-CCCCCCEEEEEecCCCCC------CceeEeEEeeeecc
Q 018198 230 DQ-------VNDLAVLHIDAP----N---HELRPIHVSVSA-DLRVGKKIYAIGHPLGWS------FTCTTGVISALDRE 288 (359)
Q Consensus 230 d~-------~~DlAll~v~~~----~---~~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~ 288 (359)
++ .+|||||+++.+ . ..+.++.|.... .+..++.+++.||..... ..+....+..+...
T Consensus 85 Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~ 164 (252)
T 1rtf_B 85 HKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSS 164 (252)
T ss_dssp CTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGG
T ss_pred CCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEecHH
Confidence 43 469999999876 2 246677776432 356789999999975321 22333444333322
Q ss_pred cCC-------cccccEEEEc-----------ccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHH
Q 018198 289 IPG-------RLIQGVIQID-----------ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRG 346 (359)
Q Consensus 289 ~~~-------~~~~~~i~~~-----------~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~ 346 (359)
.+. .....+++.. ...|.|+|||||+-. +| .++||++++..-.. ..-+.+.-+...++
T Consensus 165 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~ 244 (252)
T 1rtf_B 165 RCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLD 244 (252)
T ss_dssp GSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHH
T ss_pred HhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcCCCCCCCCCeEEEEHHHHHH
Confidence 221 1123556653 457899999999954 45 69999999863211 22356777888888
Q ss_pred HHHHHHh
Q 018198 347 IVDQLVK 353 (359)
Q Consensus 347 ~l~~l~~ 353 (359)
|+++.++
T Consensus 245 WI~~~~~ 251 (252)
T 1rtf_B 245 WIRDNMR 251 (252)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 8887653
|
| >2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-13 Score=117.91 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=116.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|..|.|...... ....|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~~~~--------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 81 (241)
T 2any_A 11 EWPWQVSLQVKLTA--------QRHLCGGSLIGHQ-WVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIII 81 (241)
T ss_dssp SSTTEEEEEEESSS--------EEEEEEEEEEETT-EEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEEE
T ss_pred CCCcEEEEEEEcCC--------CceEEEEEEecCC-EEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEEE
Confidence 45788888653211 1236999999987 999999999754 345666532 12233443444
Q ss_pred cC-------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC---
Q 018198 230 DQ-------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP--- 290 (359)
Q Consensus 230 d~-------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~--- 290 (359)
++ .+|||||+++.+.. .+.|+.|.... ....|+.+++.||..... ..+....+..+....+
T Consensus 82 Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (241)
T 2any_A 82 HQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR 161 (241)
T ss_dssp CTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHTT
T ss_pred CCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhhH
Confidence 43 46999999987543 45677775432 356799999999975321 2233333333321111
Q ss_pred --C-cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhc
Q 018198 291 --G-RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 --~-~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
. .....+++.. ...|.|+|||||+-. +| .++||.+++..-. ...-+.+..+...+.|+++.++.
T Consensus 162 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~ 237 (241)
T 2any_A 162 YQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS 237 (241)
T ss_dssp SCTTCSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred hccCCCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhc
Confidence 1 1223566663 357899999999954 45 6999999986221 12345677888889998887654
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=120.57 Aligned_cols=91 Identities=26% Similarity=0.418 Sum_probs=84.8
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc---
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ--- 118 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~--- 118 (359)
|++++..+++|..|+|+++.+.|..||||+.+|.+++++ ++.+||||++.++++.++||.+||+|+++|.+|.++.
T Consensus 28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~~ 107 (193)
T 2fgc_A 28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPLP 107 (193)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSSG
T ss_pred eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 567999999999999999999999999999999998766 5789999999999999999999999999999999984
Q ss_pred CCCCCCCcccccCCC
Q 018198 119 SSSSSLEPFFLPCSG 133 (359)
Q Consensus 119 ~~~~~~el~li~~~~ 133 (359)
.+...|||+|+|+.+
T Consensus 108 ~~~v~REl~LiKV~~ 122 (193)
T 2fgc_A 108 ENRVEREMALIKVRF 122 (193)
T ss_dssp GGEEEEEEEEEEEEC
T ss_pred CccceeEEEEEEEeC
Confidence 578999999999973
|
| >1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=120.68 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=107.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc-
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d- 230 (359)
...|..|.|.. .. ...|+|.+|+++ ||||+|||+.+. +.|++.. +..+..+-+..+
T Consensus 13 ~~~Pw~v~l~~---~~--------~~~CgGsLIs~~-~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp 78 (240)
T 1sgf_A 13 NSQPWHVAVYR---FN--------KYQCGGVLLDRN-WVLTAAHCYNDK--YQVWLGKNNFLEDEPSDQHRLVSKAIPHP 78 (240)
T ss_dssp CCCTTEEEEEC---TT--------SCCEEEEECSSS-EEEECGGGCCSC--CEEEECC----C-CTTCEEEEEEEEEECT
T ss_pred CCcCCEEEEEe---CC--------CeEEEEEEecCC-EEEECHHhCCCC--ceEEeCCcccccCCCCceEEEEEEEEcCC
Confidence 34578888831 11 236999999987 999999999753 3444421 223333333333
Q ss_pred -----------------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEee
Q 018198 231 -----------------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISA 284 (359)
Q Consensus 231 -----------------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~ 284 (359)
..+|||||+++.+.. .+.|+.|.. .....|+.+++.||..... ..+....+..
T Consensus 79 ~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~ 157 (240)
T 1sgf_A 79 DFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT-EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKL 157 (240)
T ss_dssp TSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEC-------C---------CEEEEE
T ss_pred CCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCC-CCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeE
Confidence 246999999987543 467788864 3457899999999975321 1222222322
Q ss_pred eeccc-----CCcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHH
Q 018198 285 LDREI-----PGRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 285 ~~~~~-----~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~ 352 (359)
+.... .......+++.. ...|.|+|||||+. +|.++||.+++..+.. ..-+.+..+...++|+++.+
T Consensus 158 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~ 236 (240)
T 1sgf_A 158 LPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLIC-DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236 (240)
T ss_dssp ECTHHHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEE-TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHH
T ss_pred eCHHHhhhhhCCCcCCCeEeEccCCCCCCCCCCCCcCcEEE-ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHH
Confidence 22111 111223456653 24789999999995 7899999999842221 22466778888899988877
Q ss_pred hc
Q 018198 353 KF 354 (359)
Q Consensus 353 ~~ 354 (359)
+.
T Consensus 237 ~~ 238 (240)
T 1sgf_A 237 AN 238 (240)
T ss_dssp HS
T ss_pred hc
Confidence 64
|
| >2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=115.09 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=113.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC-----CeEEEEecC-------C--cEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA-----STVKVSFSD-------Q--STFYAQVV 227 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~-----~~~~v~~~~-------g--~~~~~~v~ 227 (359)
..|..|.|........ ...|+|.+|+++ ||||+|||+.+. ..+.|.+.. + ..+..+-+
T Consensus 11 ~~Pw~v~l~~~~~~~~-------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i 82 (237)
T 2f91_A 11 EFPYQLSFQETFIGFS-------FHFCGASIYNEN-YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKI 82 (237)
T ss_dssp TSTTEEEEEEEETTEE-------EEEEEEEEEETT-EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEE
T ss_pred CCCcEEEEEEecCCCC-------cceEEEEEeeCC-EEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEEEE
Confidence 3577888865321110 124999999987 999999999653 457777632 2 33444444
Q ss_pred EEcC-------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC--
Q 018198 228 GHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP-- 290 (359)
Q Consensus 228 ~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~-- 290 (359)
..++ .+|||||+++.+.. .+.|+.|... ....++.+++.||..... ..+....+..+....+
T Consensus 83 ~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 161 (237)
T 2f91_A 83 ILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQ-GHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA 161 (237)
T ss_dssp EECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCT-TCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred EECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCC-CCCCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHhhh
Confidence 4444 46999999987643 4677888643 346789999999975321 2233333333321111
Q ss_pred ----CcccccEEEEc-----ccCCCCCccceeecCCC---eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHH
Q 018198 291 ----GRLIQGVIQID-----ASVNLGNSGGPLLDSSG---SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 291 ----~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l 351 (359)
......+++.. ...|.|+|||||+..++ .++||.+++..-.. ..-+.+..+...++|+++.
T Consensus 162 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 235 (237)
T 2f91_A 162 DYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235 (237)
T ss_dssp HHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHH
T ss_pred hhCCCCcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHh
Confidence 11223567763 35789999999995432 79999999863221 2235667788888887764
|
| >3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-13 Score=117.81 Aligned_cols=183 Identities=18% Similarity=0.187 Sum_probs=115.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|..|.|.....+ ....|+|.+|+++ ||||+|||+.+. ..+.|.+.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~~~~--------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 81 (238)
T 3bg8_A 11 EWPWQVTLHTTSPT--------QRHLCGGSIIGNQ-WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIII 81 (238)
T ss_dssp SSTTEEEEEECSSS--------CEEEEEEEEEETT-EEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEE
T ss_pred CcCcEEEEEeecCC--------CcEEEEEEEeeCC-EEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEE
Confidence 45778888653211 1237999999987 999999999654 456676631 23455554555
Q ss_pred cC-------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecc-----
Q 018198 230 DQ-------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDRE----- 288 (359)
Q Consensus 230 d~-------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~----- 288 (359)
++ .+|||||+++.+.. .+.|+.|.... ....++.+++.||.... ...+....+..+...
T Consensus 82 Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (238)
T 3bg8_A 82 HDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR 161 (238)
T ss_dssp CTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHHH
T ss_pred CCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhhh
Confidence 54 46999999987543 45677775432 35678999999997532 122233322222211
Q ss_pred cCC-cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 289 IPG-RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 289 ~~~-~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
... .....+++.. ...|.|+|||||+-. +| .++||.+++..-. ...-+.+.-+...+.++++.++
T Consensus 162 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~ 236 (238)
T 3bg8_A 162 YRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236 (238)
T ss_dssp CTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred hcCCCCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHh
Confidence 111 1223566663 357899999999954 44 5999999986221 1224567778888888887654
|
| >3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-13 Score=117.41 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=114.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----CCeEEEEecCC-------cEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----ASTVKVSFSDQ-------STFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----~~~~~v~~~~g-------~~~~~~v~~~d 230 (359)
..|.+|.|.. ...|+|.+|+++ ||||+|||+.+ ...+.|.+... ..+..+-+..+
T Consensus 11 ~~Pw~v~l~~-------------~~~CgGtLI~~~-~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~v~~i~~h 76 (242)
T 3tvj_B 11 DFPWQVLILG-------------GTTAAGALLYDN-WVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIH 76 (242)
T ss_dssp SSTTEEEEES-------------SEEEEEEEETTT-EEEECHHHHSTTTTCSSCCEEEESCSBTTCSCCEEEEEEEEEEC
T ss_pred CCCCEEEEec-------------CCcEEEEEecCC-EEEECHHHCCCCCCCcceEEEEeccccccCcccceeeEEEEEeC
Confidence 4577787751 126999999987 99999999953 44567776431 23333334433
Q ss_pred C--------CCCEEEEEEcCCCC---CccceEecCCC---CCCCCCEEEEEecCCCCC----CceeEeEEeeeecccC--
Q 018198 231 Q--------VNDLAVLHIDAPNH---ELRPIHVSVSA---DLRVGKKIYAIGHPLGWS----FTCTTGVISALDREIP-- 290 (359)
Q Consensus 231 ~--------~~DlAll~v~~~~~---~~~~~~l~~~~---~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~~-- 290 (359)
+ .+|||||+++.+.. .+.++.|.... .+..|+.+++.||..... ..+....+..+....+
T Consensus 77 p~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~ 156 (242)
T 3tvj_B 77 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTA 156 (242)
T ss_dssp TTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTTSSCCSBCEEEEEEBCCHHHHHH
T ss_pred CCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCCCCcCccceEEeeeEEcHHHHHH
Confidence 2 46999999987642 56778886543 267899999999975432 2233333333321111
Q ss_pred ---------CcccccEEEEc-----ccCCCCCccceeecC---CC--eEEEEEeeecCCC--cceeEEEEehHHHHHHHH
Q 018198 291 ---------GRLIQGVIQID-----ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGA--FSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 291 ---------~~~~~~~i~~~-----~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~ 349 (359)
......+++.. ...|.|+|||||+-. +| .++||.+++..+. ...-+.+..+...++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~ 236 (242)
T 3tvj_B 157 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIE 236 (242)
T ss_dssp HHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHH
T ss_pred hhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 01223567763 467899999999853 33 4999999984222 122366778888888888
Q ss_pred HHHh
Q 018198 350 QLVK 353 (359)
Q Consensus 350 ~l~~ 353 (359)
+.++
T Consensus 237 ~~i~ 240 (242)
T 3tvj_B 237 NIIS 240 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
|
| >2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=118.59 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=114.3
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC------CeEEEEecC----------------
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA------STVKVSFSD---------------- 218 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~------~~~~v~~~~---------------- 218 (359)
...|..|.|........ ....|+|.+|+++ ||||+|||+.+. ....|++..
T Consensus 32 ~~~Pw~v~l~~~~~~~~------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~ 104 (278)
T 2olg_A 32 EEFPWTAMIGYKNSSNF------EQFACGGSLINNR-YIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVC 104 (278)
T ss_dssp TSSTTEEEEEEECTTCC------EEEEEEEEECSSS-EEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCEETTTTEE
T ss_pred CCCCceEEEEEecCCCC------cceeEEEEEEeCC-EEEEhHHhCCCcccccccceeEEEeCcccCCCCcccccccccc
Confidence 34688888875421110 1236999999987 999999999752 345666632
Q ss_pred ----CcEEEEEEEEEcC---------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC----Cce
Q 018198 219 ----QSTFYAQVVGHDQ---------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS----FTC 277 (359)
Q Consensus 219 ----g~~~~~~v~~~d~---------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~----~~~ 277 (359)
...+..+-+..++ .+|||||+++.+.. .+.|+.|.... .+..|+.+++.||..... ..+
T Consensus 105 ~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~l 184 (278)
T 2olg_A 105 VPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIK 184 (278)
T ss_dssp CSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSSCCCCSBC
T ss_pred CCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCcCCCCCccchh
Confidence 1123333333332 47999999987543 46777776443 467899999999975322 222
Q ss_pred eEeEEeeeecccCC--------cccccEEEEc----ccCCCCCccceeecC--CC--eEEEEEeeecCCCc-ceeEEEEe
Q 018198 278 TTGVISALDREIPG--------RLIQGVIQID----ASVNLGNSGGPLLDS--SG--SLIGVNTFITSGAF-SGIGFALP 340 (359)
Q Consensus 278 ~~G~vs~~~~~~~~--------~~~~~~i~~~----~~~~~G~SGgPl~~~--~G--~viGi~~~~~~~~~-~~~~~aip 340 (359)
....+..+....+. .....+++.. ...|.|||||||+-. +| .++||+|++..-+. ..-+...-
T Consensus 185 ~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~ 264 (278)
T 2olg_A 185 QKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTK 264 (278)
T ss_dssp EEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTTCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECCBCSTTCBCEEEEE
T ss_pred hcccccccCHHHHHHHhccccccCCCceEeeecCCCCeeCCCccCcceEEEcCCCcEEEEEEEEECCCCCCCCCCcEEeE
Confidence 33333333222111 1223566663 357899999999953 34 69999999852221 12356677
Q ss_pred hHHHHHHHHHHH
Q 018198 341 IDTVRGIVDQLV 352 (359)
Q Consensus 341 ~~~i~~~l~~l~ 352 (359)
+...+.|+++.+
T Consensus 265 V~~y~~WI~~~i 276 (278)
T 2olg_A 265 VGKYRDWIEGNI 276 (278)
T ss_dssp GGGGHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 888888877643
|
| >3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=117.47 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=114.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC---CCeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG---ASTVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~---~~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
-.|.+|.|.... ...|+|.+|+++ ||||+|||+.+ ...+.|++.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~ 78 (261)
T 3gyl_B 11 QWPWQVSITYEG-----------VHVCGGSLVSEQ-WVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIP 78 (261)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEECSSS-EEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEE
T ss_pred CCCcEEEEeeCC-----------ceEEEEEEEcCC-EEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEE
Confidence 357788886421 237999999987 99999999953 2356677642 12344444455
Q ss_pred cCC-------CCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC-------CCceeEeEEeeeecccC-
Q 018198 230 DQV-------NDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW-------SFTCTTGVISALDREIP- 290 (359)
Q Consensus 230 d~~-------~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~-------~~~~~~G~vs~~~~~~~- 290 (359)
++. +|||||+++.+.. .+.++.|... ..+..|+.+++.||.... ...+....+..+....+
T Consensus 79 hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~ 158 (261)
T 3gyl_B 79 HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCN 158 (261)
T ss_dssp CTTCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHH
T ss_pred CCCcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhh
Confidence 543 5999999987543 4667777543 345689999999997532 12233333333321111
Q ss_pred ------------CcccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHH
Q 018198 291 ------------GRLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 291 ------------~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~ 349 (359)
......+++.. ...|.|+|||||+.. +| .++||.+++..-+ ...-+.+..+...+.|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~ 238 (261)
T 3gyl_B 159 SLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQ 238 (261)
T ss_dssp HHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHH
T ss_pred hhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHH
Confidence 11223566663 357899999999954 45 6999999985321 122456777888888887
Q ss_pred HHHhc
Q 018198 350 QLVKF 354 (359)
Q Consensus 350 ~l~~~ 354 (359)
+.++.
T Consensus 239 ~~i~~ 243 (261)
T 3gyl_B 239 SKVTE 243 (261)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-15 Score=147.04 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccce-------------------eeEEEEeecCCCCccchh
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQ-------------------RHTISVFVGDESGILSRI 61 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~-------------------~~~l~~~~~~~G~~lsp~ 61 (359)
++|++++|+++|+|++++|+|||++||||+++|++++++...+ .+.........|+.++|+
T Consensus 207 ~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~ 286 (430)
T 3ri6_A 207 TPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH 286 (430)
T ss_dssp SCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHH
T ss_pred cccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence 4688899999999999999999999999999999996554221 101112345689999999
Q ss_pred hhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CCCCCCC
Q 018198 62 DGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SSSSSLE 125 (359)
Q Consensus 62 ~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~~~~~e 125 (359)
++|+.+||++++.+|+ +++ .+++++++++|++++.|.+|.|.. .+++..+
T Consensus 287 ~a~l~l~~l~~l~~r~-----~~~---------~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~ 337 (430)
T 3ri6_A 287 NAYLQSLGLETMALRI-----ERS---------CQNAQELAHWLLSIPQVKCVNHPSLPDSPFYA 337 (430)
T ss_dssp HHHHHHHHHHHHHHHH-----HHH---------HHHHHHHHHHHTTCTTCEEEECTTSTTSTTHH
T ss_pred HHHHHHhhhhhHHHHH-----HHH---------HHHHHHHHHHHhCCCCccEEECCCCCCCccHH
Confidence 9999999999999999 888 999999999999999999999863 4444443
|
| >1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=114.18 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=114.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ 231 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~ 231 (359)
...|.+|.|.... ....|+|.+|+++ ||||+|||+.+. ...|.+.. ...+...-+..++
T Consensus 25 ~~~Pw~v~l~~~~----------~~~~CgGtLI~~~-~VLTAAHC~~~~-~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp 92 (245)
T 1t8o_A 25 GSWPWQVSLQDKT----------GFHFCGGSLINEN-WVVTAAHCGVTT-SDVVVAGEFDQGSSSEKIQKLKIAKVFKNS 92 (245)
T ss_dssp TSSTTEEEEECTT----------CCEEEEEEEEETT-EEEECGGGCCCT-TSEEEESCSBTTCSSSCCEEEEEEEEEECT
T ss_pred CCCCceEEEEcCC----------CCeEEEEEEeeCC-EEEEcHHhCcCC-CcEEEEeeeecCCCCCCcEEEEEEEEEeCC
Confidence 3457888886421 1236999999987 999999999763 34455421 2234444444443
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC------CCceeEeEEeeeecccC----
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW------SFTCTTGVISALDREIP---- 290 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~~~~~---- 290 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+....+
T Consensus 93 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 172 (245)
T 1t8o_A 93 KYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYW 172 (245)
T ss_dssp TCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhh
Confidence 46999999987643 46677775432 45689999999997532 12233333333322111
Q ss_pred -CcccccEEEEc---ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 291 -GRLIQGVIQID---ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 -~~~~~~~i~~~---~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
......+++.. ...|.|+|||||+.. +| .++||++++..-. ...-+....+...++|+++.++
T Consensus 173 ~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~ 243 (245)
T 1t8o_A 173 GTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243 (245)
T ss_dssp GGGCCTTEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHHH
T ss_pred cCcCCCceEEccCCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHc
Confidence 11123456653 357899999999954 34 7999999986321 1234667788888888888765
|
| >1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-13 Score=120.55 Aligned_cols=184 Identities=19% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC--cEE---------EEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ--STF---------YAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g--~~~---------~~~v~~~d 230 (359)
..|.+|.|..... .. ....|+|.+|+++ ||||+|||+.+...+.|++..- ... ..+-+..+
T Consensus 9 ~~Pw~v~l~~~~~-~~------~~~~CgGtLIs~~-~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~H 80 (240)
T 1fon_A 9 SWSWQVSLQYEKD-GA------FHHTCGGSLIAPD-WVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVH 80 (240)
T ss_dssp CEEEEEEEEEEET-TE------EEEEECCEEEETT-EEEECGGGCCTTSCEEEEEEEEETTEEEEEEEEEEECTTSEEEC
T ss_pred CcccEEEEEEecC-Cc------EeeEEEEEEeeCC-EEEECHHHCCCCCceEEEeeeeeccccCCCceeEeeeeeEEEEC
Confidence 4577888875321 10 0237999999987 9999999998877777776321 111 11112223
Q ss_pred C-------C--CCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC--
Q 018198 231 Q-------V--NDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP-- 290 (359)
Q Consensus 231 ~-------~--~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~-- 290 (359)
+ . +|||||+++.+.. .+.++.|.... .+..|+.+++.||..... ..+....+..+....+
T Consensus 81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 160 (240)
T 1fon_A 81 PLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ 160 (240)
T ss_dssp TTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTS
T ss_pred CCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhcc
Confidence 2 2 8999999987642 46777776443 456899999999975321 2233333322221111
Q ss_pred ----C-cccccEEEEc---ccCCCCCccceeecC--CC--eEEEEEeeec-CCCc--ceeEEEEehHHHHHHHHHHHh
Q 018198 291 ----G-RLIQGVIQID---ASVNLGNSGGPLLDS--SG--SLIGVNTFIT-SGAF--SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 ----~-~~~~~~i~~~---~~~~~G~SGgPl~~~--~G--~viGi~~~~~-~~~~--~~~~~aip~~~i~~~l~~l~~ 353 (359)
+ .....+++.. ...|.|+|||||+-. +| .++||.+++. .+.. ..-+....+...+.++++.++
T Consensus 161 ~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 238 (240)
T 1fon_A 161 WDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238 (240)
T ss_dssp TTTTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred ceecCCccccceEeecCCCCcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHHh
Confidence 1 1123456654 357899999999843 56 8999999975 1221 234667788888888888765
|
| >2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=117.60 Aligned_cols=182 Identities=19% Similarity=0.171 Sum_probs=116.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC---------cEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ---------STFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g---------~~~~~~v~~~d~- 231 (359)
..|.+|.|.... ....|+|.+|+++ ||||+|||+.+...+.|++... ..+..+.+..++
T Consensus 11 ~~Pw~v~l~~~~----------~~~~CgGtLIs~~-~VLTAAhC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (241)
T 2jkh_A 11 ECPWQALLINEE----------NEGFCGGTILSEF-YILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNR 79 (241)
T ss_dssp SSTTEEEEECTT----------SCEEEEEEECSSS-EEEECGGGGGSCSSCEEEESCSBTTCCCSCCEEECEEEEEECTT
T ss_pred CcCcEEEEEcCC----------CCcEEEEEEeeCC-EEEEcHHHcCCCCcEEEEECCccCCCCCCCcEEEEeEEEEeCCC
Confidence 357777775311 1237999999987 9999999998777777877431 234444444443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC----CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC---
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA----DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP--- 290 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~----~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~--- 290 (359)
.+|||||+++.+.. .+.|+.|.... .+..++.+++.||..... ..+....+..+....+
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 159 (241)
T 2jkh_A 80 FTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS 159 (241)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHH
T ss_pred CCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhccc
Confidence 35999999987643 45677775322 245789999999975321 2233333333322111
Q ss_pred --CcccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhc
Q 018198 291 --GRLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 --~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
......+++.. ...|.|+|||||+.. +| .++||.+++..-. ...-+.+..+...+.|+++.++.
T Consensus 160 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 234 (241)
T 2jkh_A 160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT 234 (241)
T ss_dssp CSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC-
T ss_pred ccCcCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhcc
Confidence 11223566663 357899999999954 45 5999999986321 12346678888899999887664
|
| >1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-12 Score=113.95 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=115.8
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecCC---------cEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSDQ---------STFYAQVVG 228 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~g---------~~~~~~v~~ 228 (359)
...|..|.|.... ....|+|.+|+++ ||||+|||+.+. ..+.|.+... +.+...-+.
T Consensus 27 ~~~Pw~v~l~~~~----------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~ 95 (247)
T 1ddj_A 27 HSWPWQVSLRTRF----------GMHFCGGTLISPE-WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLF 95 (247)
T ss_dssp TSSTTEEEEECTT----------SCEEEEEEEEETT-EEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEE
T ss_pred CCCCcEEEEEcCC----------CCeEEEEEEeeCC-EEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEE
Confidence 3467888886421 1237999999987 999999999753 3466666321 223333333
Q ss_pred Ec-CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC----CceeEeEEeeeecccC-------Cc
Q 018198 229 HD-QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS----FTCTTGVISALDREIP-------GR 292 (359)
Q Consensus 229 ~d-~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~~-------~~ 292 (359)
.+ ..+|||||+++.+.. .+.|+.|.... .+..++.+++.||..... ..+....+..+....+ ..
T Consensus 96 ~hp~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~ 175 (247)
T 1ddj_A 96 LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR 175 (247)
T ss_dssp ECTTSCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSSTTTTBCEEEEEEEECHHHHTSTTTTTTC
T ss_pred cCCCCCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCCCCCccceEEeeeecCHHHhcchhccCCC
Confidence 34 468999999987642 46677775432 356789999999975421 2233333333321111 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
....+++.. ...|.|+|||||+-. +| .++||.+++..-.. ..-+....+...+.|+++.++.
T Consensus 176 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~ 246 (247)
T 1ddj_A 176 VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 246 (247)
T ss_dssp CCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHHHT
T ss_pred CcCCeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHhhc
Confidence 223566663 357899999999953 33 69999999863211 2235677788888888887753
|
| >2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=118.51 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=106.1
Q ss_pred eEEEEEEeCCCEEEecccccCC-------CCeEEEEecCC--------cEEEEEEEEEcC----------CCCEEEEEEc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICG-------ASTVKVSFSDQ--------STFYAQVVGHDQ----------VNDLAVLHID 241 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~-------~~~~~v~~~~g--------~~~~~~v~~~d~----------~~DlAll~v~ 241 (359)
.|+|.+|+++ ||||+|||+.. ...+.|.+... ..+..+-+..++ .+|||||+++
T Consensus 23 ~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~ 101 (242)
T 2qy0_B 23 RGGGALLGDR-WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 101 (242)
T ss_dssp EEEEEEETTT-EEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEES
T ss_pred CEEEEEEeCC-EEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEEECCCCccCcCCCCCCcEEEEEEC
Confidence 6999999987 99999999963 23456666432 122333333333 3499999998
Q ss_pred CCCC---CccceEecCCCC-CCCCCEEEEEecCCCCC---CceeEeEEeeeecccC----------CcccccEEEEc---
Q 018198 242 APNH---ELRPIHVSVSAD-LRVGKKIYAIGHPLGWS---FTCTTGVISALDREIP----------GRLIQGVIQID--- 301 (359)
Q Consensus 242 ~~~~---~~~~~~l~~~~~-~~~G~~v~~iG~p~~~~---~~~~~G~vs~~~~~~~----------~~~~~~~i~~~--- 301 (359)
.+.. .+.|+.|..... +..|+.+++.||..... ..+....+..+....+ ......+++..
T Consensus 102 ~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~ 181 (242)
T 2qy0_B 102 NSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 181 (242)
T ss_dssp SCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSSCCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTT
T ss_pred CCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCcCCccceEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCC
Confidence 7643 467777764332 46799999999975432 2233333333321111 01123567763
Q ss_pred --ccCCCCCccceeecCCC-----eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 302 --ASVNLGNSGGPLLDSSG-----SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 302 --~~~~~G~SGgPl~~~~G-----~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...|.|+|||||+-.++ .++||++++..-. .+.+.+..+...++|+++.++.
T Consensus 182 ~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~-~~~~vyt~V~~y~~WI~~~~~~ 240 (242)
T 2qy0_B 182 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCS-RGYGFYTKVLNYVDWIKKEMEE 240 (242)
T ss_dssp CCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSS-SSCEEEEEGGGGHHHHHHHTTC
T ss_pred CCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcC-CCCcEEEEHHHHHHHHHHHhhc
Confidence 35789999999995322 5999999986322 2346778888899999887653
|
| >1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=118.17 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=116.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVG 228 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~ 228 (359)
...|.+|.|... ...|+|.+|+++ ||||+|||+.+. ..+.|++.. ...+..+-+.
T Consensus 45 ~~~Pw~v~l~~~------------~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~ 111 (283)
T 1yc0_A 45 GSHPWLAAIYIG------------DSFCAGSLVHTC-WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYI 111 (283)
T ss_dssp TSSTTEEEEEET------------TEEEEEEEEETT-EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEE
T ss_pred CCCCeEEEEEcC------------CcEEEEEEeeCC-EEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEE
Confidence 345788888541 136999999987 999999999764 467777742 1233333333
Q ss_pred Ec--------CCCCEEEEEEcCC----C---CCccceEecCC-CCCCCCCEEEEEecCCCC------CCceeEeEEeeee
Q 018198 229 HD--------QVNDLAVLHIDAP----N---HELRPIHVSVS-ADLRVGKKIYAIGHPLGW------SFTCTTGVISALD 286 (359)
Q Consensus 229 ~d--------~~~DlAll~v~~~----~---~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~------~~~~~~G~vs~~~ 286 (359)
.+ ..+|||||+++.+ . ..+.++.|... ..+..|+.+++.||.... ...+....+..+.
T Consensus 112 ~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~ 191 (283)
T 1yc0_A 112 PYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVA 191 (283)
T ss_dssp ECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCC
T ss_pred ecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEEC
Confidence 33 2469999999875 1 24677777543 345689999999997532 2233444444333
Q ss_pred cccC------C-cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHH
Q 018198 287 REIP------G-RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQ 350 (359)
Q Consensus 287 ~~~~------~-~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~ 350 (359)
...+ + .....+++.. ...|.|+|||||+.. +| .++||++++..-. ...-+.+..+...+.|+++
T Consensus 192 ~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~ 271 (283)
T 1yc0_A 192 DHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIND 271 (283)
T ss_dssp HHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHH
T ss_pred HHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHHHH
Confidence 2111 1 1123567763 357899999999954 45 5999999986221 1234667788888888888
Q ss_pred HHhc
Q 018198 351 LVKF 354 (359)
Q Consensus 351 l~~~ 354 (359)
.++.
T Consensus 272 ~i~~ 275 (283)
T 1yc0_A 272 RIRP 275 (283)
T ss_dssp HCC-
T ss_pred HhcC
Confidence 7654
|
| >2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=116.46 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=115.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----CCeEEEEecC------CcEEEEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----ASTVKVSFSD------QSTFYAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----~~~~~v~~~~------g~~~~~~v~~~d~ 231 (359)
..|.+|.|..... . ....|+|.+|+++ ||||+|||+.. ...+.|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~~~--~------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~v~~i~~Hp 81 (245)
T 2f9n_A 11 KWPWQVSLRVRDR--Y------WMHFCGGSLIHPQ-WVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVHP 81 (245)
T ss_dssp SCTTEEEEEEESS--S------EEEEEEEEEEETT-EEEECGGGGCSSCCCGGGEEEECSCSBTTTTCCCBCEEEEEECT
T ss_pred CCCcEEEEEEcCC--C------cceEEEEEEeeCC-EEEECHHhCCCCCCCcceEEEEeCCcccccCceEEEEEEEEECC
Confidence 4578888865321 0 0236999999987 99999999953 2456777643 2234444444444
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-------CceeEeEEeeeecccC---
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-------FTCTTGVISALDREIP--- 290 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-------~~~~~G~vs~~~~~~~--- 290 (359)
.+|||||+++.+.. .+.++.|... ..+..|+.+++.||..... ..+....+..+....+
T Consensus 82 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (245)
T 2f9n_A 82 QFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAK 161 (245)
T ss_dssp TCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHHH
T ss_pred CccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhhh
Confidence 35999999987643 4677777643 3456899999999975321 1223332222221110
Q ss_pred -----------CcccccEEEEc---ccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHH
Q 018198 291 -----------GRLIQGVIQID---ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 -----------~~~~~~~i~~~---~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~ 352 (359)
......+++.. ...|.|+|||||+-. +| .++||.+++..-.. ..-+...-+...++|+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~ 241 (245)
T 2f9n_A 162 YHLGAYTGDDVRIIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241 (245)
T ss_dssp HHTTCCSCTTSCCSCTTEEEECCSSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHS
T ss_pred hcccccccccccccccccEeecCCCCCcCCCCCCCceEEEECCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 01123456653 357899999999954 56 69999999863211 22366778888889988876
Q ss_pred hc
Q 018198 353 KF 354 (359)
Q Consensus 353 ~~ 354 (359)
+.
T Consensus 242 ~~ 243 (245)
T 2f9n_A 242 PK 243 (245)
T ss_dssp CC
T ss_pred hc
Confidence 53
|
| >4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=115.61 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=112.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC----CeEEEEecC----------CcEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA----STVKVSFSD----------QSTFYAQVV 227 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~----~~~~v~~~~----------g~~~~~~v~ 227 (359)
..|.+|.|.... ...|+|.+|+++ ||||+|||+.+. ..+.+.+.. ......+-+
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i 78 (235)
T 4dgj_A 11 AWPWVVGLYYDD-----------RLLCGASLVSSD-WLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEI 78 (235)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEECSSS-EEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEE
T ss_pred CCCcEEEEeeCC-----------CeEEEEEEeeCC-EEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEE
Confidence 457788886421 237999999987 999999999542 345666531 122334444
Q ss_pred EEcCC-------CCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC-
Q 018198 228 GHDQV-------NDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP- 290 (359)
Q Consensus 228 ~~d~~-------~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~- 290 (359)
..+++ +|||||+++.+.. .+.++.|.... .+..|+.+++.||.... ...+....+..+....+
T Consensus 79 ~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 158 (235)
T 4dgj_A 79 VINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ 158 (235)
T ss_dssp EECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHH
T ss_pred EECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhh
Confidence 45543 6999999987542 46677776433 35689999999997421 12233333333321111
Q ss_pred ----C-cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHH
Q 018198 291 ----G-RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 ----~-~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~ 352 (359)
. .....+++.. ...|.|+|||||+-. +| .++||.+++..-. ...-+.+..+...++|+++.+
T Consensus 159 ~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i 234 (235)
T 4dgj_A 159 QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234 (235)
T ss_dssp HHCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTC
T ss_pred hhccCccCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHh
Confidence 1 1223566663 257899999999954 34 4999999986322 122456777888888887654
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=114.40 Aligned_cols=114 Identities=31% Similarity=0.428 Sum_probs=96.4
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CC
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SS 120 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~ 120 (359)
|+|.+..+++|..|+|+++.+.|..||+|+.++.+++++ ++.+|||+++.++++.++||.+||+|+++|.+|.++. .+
T Consensus 3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~~ 82 (165)
T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEG 82 (165)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 457899999999999999999999999999999998766 6789999999999999999999999999999999984 68
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCchhhhhHHHhhhcCCCeeEEEE
Q 018198 121 SSSLEPFFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIG 170 (359)
Q Consensus 121 ~~~~el~li~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~svV~I~ 170 (359)
+..||++|+|+.+. ......+.++++..+..+|-+.
T Consensus 83 ~v~rEl~liKv~~~--------------~~~r~~i~~~~~~fra~ivdv~ 118 (165)
T 2pc6_A 83 YVERELMLVKVRAV--------------GKDREEMKRLADIFRGNIIDVT 118 (165)
T ss_dssp EEEEEEEEEEEECC--------------THHHHHHHHHHHHTTCEEEEEE
T ss_pred eeeeEEEEEEEeCC--------------cccHHHHHHHHHHcCCEEEEEc
Confidence 99999999999741 1223445556666666666554
|
| >4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=122.69 Aligned_cols=182 Identities=11% Similarity=0.091 Sum_probs=117.8
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC-----------eEEEEecCCcEEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS-----------TVKVSFSDQSTFYAQVVGH 229 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~-----------~~~v~~~~g~~~~~~v~~~ 229 (359)
..-|..|.|.... ...+.|.+|+++ ||||||||+.... .........+.+..+-+..
T Consensus 112 g~~Pw~v~l~~~~-----------~~~CGGsLIs~~-~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~ 179 (347)
T 4f4o_C 112 GSFPWQAKMISHH-----------NLTSGATLINEQ-WLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIF 179 (347)
T ss_dssp CCCTTCEEEECTT-----------CCEEECCBCSSS-EEEECHHHHTTTSCTTCCHHHHGGGCEEEETTTEEECEEEEEE
T ss_pred CCCCcEEEEEeCC-----------CEEEEEEEEcCC-EEEeCcccccCCCCCcceEEeeeeeeeecCCCeEEEEEEEEEE
Confidence 3457777775321 237999999987 9999999996321 2334444445555555556
Q ss_pred cC---CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC----CceeEeEEeeeecccC---------
Q 018198 230 DQ---VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS----FTCTTGVISALDREIP--------- 290 (359)
Q Consensus 230 d~---~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~~--------- 290 (359)
++ .+|||||+++.+.. .+.|+.|........|...++.||..... ..+....+..+.....
T Consensus 180 HP~y~~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~ 259 (347)
T 4f4o_C 180 HPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKCVQYYEGSTV 259 (347)
T ss_dssp CSCTTTCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTTSSBCSSCEEEEEEEECHHHHHHHHSSCSS
T ss_pred CcCCCCCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCCCCCCccceEEEEEEeCHHHHHHHhccccc
Confidence 65 45999999987542 56788887666778899999999975422 2233333333321100
Q ss_pred -------------CcccccEEEEc-----ccCCCCCccceeec---CCC--eEEEEEeeecCCCcceeEEEEehHHHHHH
Q 018198 291 -------------GRLIQGVIQID-----ASVNLGNSGGPLLD---SSG--SLIGVNTFITSGAFSGIGFALPIDTVRGI 347 (359)
Q Consensus 291 -------------~~~~~~~i~~~-----~~~~~G~SGgPl~~---~~G--~viGi~~~~~~~~~~~~~~aip~~~i~~~ 347 (359)
.....++++.. ...|.|||||||+- .+| .++||+|++..-+...-+.+.-+...+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~~~pgVYTrVs~y~~W 339 (347)
T 4f4o_C 260 PEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRTAEYGVYVRVTSILDW 339 (347)
T ss_dssp GGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCTTTSSCEEEEEHHHHHHH
T ss_pred cccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCCCCCCCeEEEEHHHHHHH
Confidence 01123456652 35788999999972 234 39999999863222234667788999999
Q ss_pred HHHHHhc
Q 018198 348 VDQLVKF 354 (359)
Q Consensus 348 l~~l~~~ 354 (359)
+++.+++
T Consensus 340 I~~~i~~ 346 (347)
T 4f4o_C 340 IQTTIAD 346 (347)
T ss_dssp HHHHHTC
T ss_pred HHHHHHc
Confidence 9987764
|
| >1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-12 Score=114.74 Aligned_cols=186 Identities=15% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC--------------CcEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD--------------QSTFYA 224 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~--------------g~~~~~ 224 (359)
..|.+|.|........ .....|.|.+|+++ ||||+|||+... ..+.|.+.. ...+..
T Consensus 11 ~~Pw~v~l~~~~~~~~-----~~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V 84 (290)
T 1fiw_A 11 AWPWMVSLQIFTYHNN-----RRYHVCGGSLLNSQ-WLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYV 84 (290)
T ss_dssp SSTTEEEEEEEETTTT-----EEEEEEEEEEEETT-EEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEE
T ss_pred CCCcEEEEEEeccCCC-----ccceEEEEEEeeCC-EEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEE
Confidence 4578888865321111 01236999999987 999999999653 346666532 122334
Q ss_pred EEEEEcC-------CCCEEEEEEcCCCC---CccceEecCCC--CCCCCCEEEEEecCCCCC------CceeEeEEeeee
Q 018198 225 QVVGHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVSA--DLRVGKKIYAIGHPLGWS------FTCTTGVISALD 286 (359)
Q Consensus 225 ~v~~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~~--~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~ 286 (359)
+-+..++ .+|||||+++.+.. .+.++.|.... ....|+.+++.||..... ..+....+..+.
T Consensus 85 ~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~ 164 (290)
T 1fiw_A 85 EKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLID 164 (290)
T ss_dssp EEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEEC
T ss_pred EEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEec
Confidence 4444443 36999999987643 46677775432 235689999999975321 223444443333
Q ss_pred cccC-------CcccccEEEEc-----ccCCCCCccceeecCC---C--eEEEEEeeecCCCc-ceeEEEEehHHHHHHH
Q 018198 287 REIP-------GRLIQGVIQID-----ASVNLGNSGGPLLDSS---G--SLIGVNTFITSGAF-SGIGFALPIDTVRGIV 348 (359)
Q Consensus 287 ~~~~-------~~~~~~~i~~~-----~~~~~G~SGgPl~~~~---G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l 348 (359)
...+ ......+++.. ...|.|||||||+-.+ | .++||++++..-.. ..-+...-+...++++
T Consensus 165 ~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI 244 (290)
T 1fiw_A 165 LGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWI 244 (290)
T ss_dssp HHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHH
T ss_pred HHHhccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHH
Confidence 2111 11223567764 3678999999999532 3 69999999862211 1235566677788888
Q ss_pred HHHHh
Q 018198 349 DQLVK 353 (359)
Q Consensus 349 ~~l~~ 353 (359)
++.++
T Consensus 245 ~~~~~ 249 (290)
T 1fiw_A 245 ASKIG 249 (290)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 77654
|
| >2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=118.58 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=112.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC--------CCeEEEEecCC----------cEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG--------ASTVKVSFSDQ----------STFY 223 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~--------~~~~~v~~~~g----------~~~~ 223 (359)
..|..|.|.... . ....|.|.+|+++ ||||+|||+.. ...+.|++... +.+.
T Consensus 41 ~~Pw~v~l~~~~--~-------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~ 110 (289)
T 2bdy_A 41 MSPWQVMLFRKS--P-------QELLCGASLISDR-WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM 110 (289)
T ss_dssp SCTTEEEEEETT--T-------TEEEEEEEECSSS-EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEE
T ss_pred CCCCeEEEEECC--C-------CCEEEEEEEecCC-EEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceeee
Confidence 357778775321 0 1237999999987 99999999842 34567777421 1233
Q ss_pred EEEEEEcC--------CCCEEEEEEcCCCC---CccceEecCCCC----CCCCCEEEEEecCCCCC-----------Cce
Q 018198 224 AQVVGHDQ--------VNDLAVLHIDAPNH---ELRPIHVSVSAD----LRVGKKIYAIGHPLGWS-----------FTC 277 (359)
Q Consensus 224 ~~v~~~d~--------~~DlAll~v~~~~~---~~~~~~l~~~~~----~~~G~~v~~iG~p~~~~-----------~~~ 277 (359)
.+-+..++ .+|||||+++.+.. .+.|+.|..... +..|..+++.||..... ..+
T Consensus 111 v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~~~L 190 (289)
T 2bdy_A 111 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL 190 (289)
T ss_dssp EEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCCSBC
T ss_pred eEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCccccccccc
Confidence 33333332 35999999987643 466777753221 46799999999975321 123
Q ss_pred eEeEEeeeecccC-----CcccccEEEEc--------ccCCCCCccceeecC---CC--eEEEEEeeecCCC-cceeEEE
Q 018198 278 TTGVISALDREIP-----GRLIQGVIQID--------ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGA-FSGIGFA 338 (359)
Q Consensus 278 ~~G~vs~~~~~~~-----~~~~~~~i~~~--------~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~-~~~~~~a 338 (359)
....+..+....+ ......+++.. ...|.|||||||+-. +| .++||+|++..-. ...-+..
T Consensus 191 ~~~~v~i~~~~~C~~~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vy 270 (289)
T 2bdy_A 191 QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 270 (289)
T ss_dssp EEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEE
T ss_pred eEEEEEEECHHHhhccccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCCCCCEEE
Confidence 3333333321111 11223567763 357999999999843 33 5999999986221 1223567
Q ss_pred EehHHHHHHHHHHHh
Q 018198 339 LPIDTVRGIVDQLVK 353 (359)
Q Consensus 339 ip~~~i~~~l~~l~~ 353 (359)
.-+...+.|+++.++
T Consensus 271 t~V~~y~~WI~~~i~ 285 (289)
T 2bdy_A 271 THVFRLKKWIQKVID 285 (289)
T ss_dssp EETGGGHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHH
Confidence 778888888887664
|
| >2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=114.77 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=113.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
-.|..|.|.... ...|+|.+|+++ ||||+|||+.....+.|.+.. ...+...-+..++
T Consensus 11 ~~Pw~v~l~~~~-----------~~~CgGtLIs~~-~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 78 (235)
T 2wph_S 11 QFPWQVVLNGKV-----------DAFCGGSIVNEK-WIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHN 78 (235)
T ss_dssp SSTTEEEEESSS-----------TTCEEEEEEETT-EEEECGGGCCTTSCCEEEESCCBTTSCCSCCEEEEEEEEEECTT
T ss_pred CCCeEEEEccCC-----------CeeEEEEEEeCC-EEEECHHHCcCCCCEEEEEcccccCCCCCCcEEeeeEEEEeCCC
Confidence 357778775321 236999999987 999999999877777777742 1233343333332
Q ss_pred --------CCCEEEEEEcCCCC---CccceEecCCCC---CCCCCEEEEEecCCCCC-----CceeEeEEeeeeccc---
Q 018198 232 --------VNDLAVLHIDAPNH---ELRPIHVSVSAD---LRVGKKIYAIGHPLGWS-----FTCTTGVISALDREI--- 289 (359)
Q Consensus 232 --------~~DlAll~v~~~~~---~~~~~~l~~~~~---~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~--- 289 (359)
.+|||||+++.+.. .+.|+.|..... +..++.+++.||..... ..+....+..+....
T Consensus 79 y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~ 158 (235)
T 2wph_S 79 FNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR 158 (235)
T ss_dssp TTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred CcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcC
Confidence 35999999987643 456666743221 23578999999974321 123333333332111
Q ss_pred --CCcccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 290 --PGRLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 290 --~~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.......+++.. ...|.|+|||||+.. +| .++||.+++..-. ...-+.+..+...++|+++.++
T Consensus 159 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~ 233 (235)
T 2wph_S 159 STKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233 (235)
T ss_dssp TCSSCCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred cccCCCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHh
Confidence 111223567763 357899999999954 45 5999999986321 1234667788888888887654
|
| >2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-12 Score=114.71 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=115.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|..|.|... . ...|+|.+|+++ ||||+|||+.+.. .+.|++.. ...+..+-+..
T Consensus 11 ~~Pw~v~l~~~----~-------~~~CgGtLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 78 (254)
T 2bz6_H 11 ECPWQVLLLVN----G-------AQLCGGTLINTI-WVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVII 78 (254)
T ss_dssp SSTTEEEEEET----T-------EEEEEEEECSSS-EEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEE
T ss_pred CcCCEEEEEeC----C-------CcEEEEEEecCC-EEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEE
Confidence 45778888631 1 237999999987 9999999997654 37777742 22344444444
Q ss_pred cC-------CCCEEEEEEcCCCC---CccceEecCCC----CCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC
Q 018198 230 DQ-------VNDLAVLHIDAPNH---ELRPIHVSVSA----DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP 290 (359)
Q Consensus 230 d~-------~~DlAll~v~~~~~---~~~~~~l~~~~----~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~ 290 (359)
++ .+|||||+++.+.. .+.++.|.... .+..++.+++.||..... ..+....+..+....+
T Consensus 79 hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C 158 (254)
T 2bz6_H 79 PSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDC 158 (254)
T ss_dssp ETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHH
T ss_pred CCCCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHH
Confidence 43 46999999987643 45677775322 245689999999974321 2233333333321110
Q ss_pred -----C-----cccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHH
Q 018198 291 -----G-----RLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 291 -----~-----~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l 351 (359)
. .....+++.. ...|.|+|||||+.. +| .++||++++..-. ...-+.+..+...+.|+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 238 (254)
T 2bz6_H 159 LQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKL 238 (254)
T ss_dssp HHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred hhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 0 1223567763 357899999999954 45 5999999986321 12346678888889999887
Q ss_pred Hhc
Q 018198 352 VKF 354 (359)
Q Consensus 352 ~~~ 354 (359)
++.
T Consensus 239 ~~~ 241 (254)
T 2bz6_H 239 MRS 241 (254)
T ss_dssp HTS
T ss_pred Hhc
Confidence 764
|
| >3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-12 Score=114.75 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=111.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccC--------CCCeEEEEecCC---------c-EEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVIC--------GASTVKVSFSDQ---------S-TFY 223 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~--------~~~~~~v~~~~g---------~-~~~ 223 (359)
..|.+|.|..... ....|+|.+|+++ ||||+|||+. ....+.|++... . ...
T Consensus 11 ~~Pw~v~l~~~~~---------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~ 80 (259)
T 3rm2_H 11 MSPWQVMLFRKSP---------QELLCGASLISDR-WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM 80 (259)
T ss_dssp SSTTEEEEEEETT---------EEEEEEEEECSSS-EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEE
T ss_pred CcCCEEEEEECCC---------CceEEEEEEEeCC-EEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeE
Confidence 4577888853221 1236999999987 9999999984 234566776421 1 122
Q ss_pred EEEEEEcC--------CCCEEEEEEcCCCC---CccceEecCCC----CCCCCCEEEEEecCCCCC-----------Cce
Q 018198 224 AQVVGHDQ--------VNDLAVLHIDAPNH---ELRPIHVSVSA----DLRVGKKIYAIGHPLGWS-----------FTC 277 (359)
Q Consensus 224 ~~v~~~d~--------~~DlAll~v~~~~~---~~~~~~l~~~~----~~~~G~~v~~iG~p~~~~-----------~~~ 277 (359)
.+-+..++ .+|||||+++.+.. .+.|+.|.... .+..|..+++.||..... ..+
T Consensus 81 v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l 160 (259)
T 3rm2_H 81 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL 160 (259)
T ss_dssp EEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBC
T ss_pred EEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccc
Confidence 33333333 34999999987543 45677775322 135799999999975321 122
Q ss_pred eEeEEeeeecccC-----CcccccEEEEc--------ccCCCCCccceeecC---CC--eEEEEEeeecCCCc-ceeEEE
Q 018198 278 TTGVISALDREIP-----GRLIQGVIQID--------ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAF-SGIGFA 338 (359)
Q Consensus 278 ~~G~vs~~~~~~~-----~~~~~~~i~~~--------~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~-~~~~~a 338 (359)
....+..+....+ ......+++.. ...|.|+|||||+-. +| .++||.+++..-.. ..-+.+
T Consensus 161 ~~~~~~~~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vy 240 (259)
T 3rm2_H 161 QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 240 (259)
T ss_dssp EEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEE
T ss_pred eEEEEEEeCHHHhhhhhcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEE
Confidence 3333332222111 11223567763 268899999999843 23 79999999863221 223567
Q ss_pred EehHHHHHHHHHHHh
Q 018198 339 LPIDTVRGIVDQLVK 353 (359)
Q Consensus 339 ip~~~i~~~l~~l~~ 353 (359)
.-+...++|+++.++
T Consensus 241 t~V~~~~~WI~~~i~ 255 (259)
T 3rm2_H 241 THVFRLKKWIQKVID 255 (259)
T ss_dssp EETGGGHHHHHHHHH
T ss_pred EEHHHhHHHHHHHHH
Confidence 778888888877664
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=118.15 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=117.4
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC------CcEEEEEEEEEcC--
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD------QSTFYAQVVGHDQ-- 231 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~------g~~~~~~v~~~d~-- 231 (359)
....|..|.|.... ....++|.+|+++ ||||+|||+.+...+.|++.. ...+..+-+..++
T Consensus 61 ~~~~Pw~v~l~~~~----------~~~~CgGtLI~~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y 129 (283)
T 3f1s_B 61 LQDLPWQVKLTNSE----------GKDFCGGVIIREN-FVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRY 129 (283)
T ss_dssp --CCTTEEEEECTT----------SCEEEEEEEEETT-EEEECHHHHTSCSSCEEEECTTC-CCCCEEEEEEEEEECTTC
T ss_pred ccccCCEEEEEecC----------CCeeeccEEecCC-EEEEcHHhcCccCceEEEEeeeeCCCCcEEEEeEEEEECCCC
Confidence 34578888886421 1237999999987 999999999887778888752 2345555455554
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecCCC----CCCCCCEEEEEecCCCC---CCceeEeEEeeeeccc-----CC
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSVSA----DLRVGKKIYAIGHPLGW---SFTCTTGVISALDREI-----PG 291 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~~~----~~~~G~~v~~iG~p~~~---~~~~~~G~vs~~~~~~-----~~ 291 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+.... ..
T Consensus 130 ~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~ 209 (283)
T 3f1s_B 130 DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNV 209 (283)
T ss_dssp BTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBCC-------CEEEEEEEECHHHHHHHHTS
T ss_pred CCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCCCCCCCCceeeEEEEeEeCHHHHhhhhcC
Confidence 45999999987543 46677775432 45789999999997521 1122333333332111 11
Q ss_pred cccccEEEEcc--cCCCCCccceeecC-CCe--EEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 292 RLIQGVIQIDA--SVNLGNSGGPLLDS-SGS--LIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 292 ~~~~~~i~~~~--~~~~G~SGgPl~~~-~G~--viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....+++... ....|+|||||+-. +|+ ++||++++.......-+...-+...+.|+++.++.
T Consensus 210 ~~~~~~~Ca~~~~~~~~gDSGgPlv~~~~~~~~l~GIvS~g~c~~~~~p~vyt~V~~y~~WI~~~~~~ 277 (283)
T 3f1s_B 210 TVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQAHMVLVTKVSRYSLWFKQIMNA 277 (283)
T ss_dssp CCCTTEEEEECSSCGGGBCTTCEEEEECSSCEEEEEEECCCSGGGCSSEEEEEEGGGGHHHHHHHHTC
T ss_pred CCCCCeEcccCCCCCCCCCCCCcEEEEECCEEEEEEEEEeCCCCCCCcceEEEEhHHhHHHHHHHhhc
Confidence 12234566532 23468999999954 555 99999986422222345778888888888887764
|
| >1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-12 Score=118.57 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=115.1
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----CCeEEEEecC-------CcEEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----ASTVKVSFSD-------QSTFYAQVVGH 229 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----~~~~~v~~~~-------g~~~~~~v~~~ 229 (359)
...|..|.|.... ...|.|.+|+++ ||||||||+.. ...+.|.+.. +..+..+-+..
T Consensus 127 ~~~Pw~v~l~~~~-----------~~~CgGsLIs~~-~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~V~~i~~ 194 (372)
T 1z8g_A 127 GRWPWQVSLRYDG-----------AHLCGGSLLSGD-WVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVY 194 (372)
T ss_dssp TSSTTEEEEEETT-----------EEEEEEEESSSS-EEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEE
T ss_pred CCCCcEEEEEeCC-----------ceEEEEEEecCC-EEEEChhhcCCCCCccceEEEEEeeEeccCCCCcEEEEEEEEE
Confidence 3457778876421 236999999987 99999999942 2456776632 22344443444
Q ss_pred cC-------------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeec
Q 018198 230 DQ-------------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDR 287 (359)
Q Consensus 230 d~-------------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~ 287 (359)
++ .+|||||+++.+.. .+.|+.|... ..+..|+.+++.||..... ..+....+..+..
T Consensus 195 Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~~~v~ii~~ 274 (372)
T 1z8g_A 195 HGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISN 274 (372)
T ss_dssp ETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECH
T ss_pred CCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeEEEEEecCh
Confidence 43 34999999987542 4677777643 3456799999999975321 2233333333322
Q ss_pred cc------C-CcccccEEEEc-----ccCCCCCccceeecCC-----C--eEEEEEeeecCCC-cceeEEEEehHHHHHH
Q 018198 288 EI------P-GRLIQGVIQID-----ASVNLGNSGGPLLDSS-----G--SLIGVNTFITSGA-FSGIGFALPIDTVRGI 347 (359)
Q Consensus 288 ~~------~-~~~~~~~i~~~-----~~~~~G~SGgPl~~~~-----G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~ 347 (359)
.. . ......+++.. ...|.|||||||+-.+ | .++||++++..-. ...-+...-+...+.+
T Consensus 275 ~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~W 354 (372)
T 1z8g_A 275 DVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 354 (372)
T ss_dssp HHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHH
T ss_pred HHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHH
Confidence 11 1 11223567763 3578999999999432 3 6999999986211 1223567778888888
Q ss_pred HHHHHhc
Q 018198 348 VDQLVKF 354 (359)
Q Consensus 348 l~~l~~~ 354 (359)
+++.++.
T Consensus 355 I~~~i~~ 361 (372)
T 1z8g_A 355 IFQAIKT 361 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8776653
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-13 Score=110.93 Aligned_cols=114 Identities=32% Similarity=0.402 Sum_probs=95.2
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeecc-CC
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQ-SS 120 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~-~~ 120 (359)
++|.+..+++|..|+|+++.+.|..||+|+.++.+++.+ ++.+||+++++++++.++||.+||+|+++|.+|.++. .+
T Consensus 2 ~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~~ 81 (164)
T 2f1f_A 2 ARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGA 81 (164)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCcc
Confidence 357889999999999999999999999999999997766 5789999999999999999999999999999999984 68
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCchhhhhHHHhhhcCCCeeEEEE
Q 018198 121 SSSLEPFFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVWIG 170 (359)
Q Consensus 121 ~~~~el~li~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~svV~I~ 170 (359)
+..|||+|+|+.+. ......+.++++..+..+|-+.
T Consensus 82 ~v~rEl~liKv~~~--------------~~~r~~i~~~~~~fra~ivdv~ 117 (164)
T 2f1f_A 82 HVEREIMLVKIQAS--------------GYGRDEVKRNTEIFRGQIIDVT 117 (164)
T ss_dssp EEEEEEEEEEEECC--------------THHHHHHHHHHHHTTCEEEEEC
T ss_pred cceeEEEEEEEECC--------------cccHHHHHHHHHHcCCEEEEEC
Confidence 99999999999741 1123445555555555555543
|
| >3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-12 Score=111.50 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEe---CCCEEEecccccCCC------CeEEEEec--CC----cEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWD---QDGHIVTNYHVICGA------STVKVSFS--DQ----STFYAQV 226 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~---~~g~vlT~~Hvv~~~------~~~~v~~~--~g----~~~~~~v 226 (359)
..|++++|..... . ....|+|.+|+ ++ ||||||||+.+. ..+.+... +. ..+.++-
T Consensus 5 ~~p~~g~l~~~~~-~-------~~~~CgGslI~s~s~~-~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~ 75 (218)
T 3cp7_A 5 DSPHIGKVFFSTN-Q-------GDFVCSANIVASANQS-TVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEE 75 (218)
T ss_dssp TCTTEEEEEEEET-T-------EEEEEEEEEBCCTTSC-EEEECGGGTBCCTTCBBCEEEEEEETCSSSCCTTCCEEEEE
T ss_pred CCceEEEEEEEcC-C-------CCeEEEEEEEecCCCC-EEEEChHhcCcCCCCeeecCEEEECcccCCCCCccEEEEEE
Confidence 3567788865321 1 12379999998 77 999999999643 24555542 11 1344433
Q ss_pred EEEc--------CCCCEEEEEEcCC--CC---Ccc-ceEecCCCCCCCCCEEEEEecCCCCC---CceeEeEEeeeeccc
Q 018198 227 VGHD--------QVNDLAVLHIDAP--NH---ELR-PIHVSVSADLRVGKKIYAIGHPLGWS---FTCTTGVISALDREI 289 (359)
Q Consensus 227 ~~~d--------~~~DlAll~v~~~--~~---~~~-~~~l~~~~~~~~G~~v~~iG~p~~~~---~~~~~G~vs~~~~~~ 289 (359)
+..+ ..+||||||++.+ .. .+. +++|... ...|+.+++.|||.... .......-.......
T Consensus 76 ~~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~--~~~g~~~~v~GwG~~~~~~~~~l~~C~~~~~~~~~ 153 (218)
T 3cp7_A 76 LVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN--QPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPM 153 (218)
T ss_dssp EEECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCS--CCSSCEEEEEECCCSTTCCSSSCEEEEEECEECTT
T ss_pred EEECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeec--CCCCCEEEEEeCCCCCCCCCceeeEeeeeEEcCCC
Confidence 3332 3579999999986 11 133 5566432 25789999999996432 111111100000000
Q ss_pred CCcccccEEEEcccCCCCCccceeecC---CCeEEEEEeeecCCCcceeEEEEe-hHHHHHHHHHHHh
Q 018198 290 PGRLIQGVIQIDASVNLGNSGGPLLDS---SGSLIGVNTFITSGAFSGIGFALP-IDTVRGIVDQLVK 353 (359)
Q Consensus 290 ~~~~~~~~i~~~~~~~~G~SGgPl~~~---~G~viGi~~~~~~~~~~~~~~aip-~~~i~~~l~~l~~ 353 (359)
......++ |..+.|+|||||+.. .++++||+|++.. ......|+-. -+.++.++++..+
T Consensus 154 -~~~~~~~~---Ca~~~GDSGGPlv~~~~g~~~lvGIvS~G~g-c~~~~~~~p~~~~~~~~l~~~a~~ 216 (218)
T 3cp7_A 154 -GSSTQGIP---CNMTGGSSGGPWFLGNGTGGAQNSTNSYGYT-FLPNVMFGPYFGSGAQQNYNYAST 216 (218)
T ss_dssp -SSSCEEEE---CCCCTTCTTCEEEESSSSSSCEEEECCEEET-TEEEEEEECCCCHHHHHHHHHHTT
T ss_pred -CCceEEec---CCCCCCCcCCeeEEccCCCeEEEEEEccccC-CCCCcEEcCcCCHHHHHHHHHHHh
Confidence 00011222 334679999999954 2789999999863 3233444432 3677777776544
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=118.10 Aligned_cols=181 Identities=14% Similarity=0.067 Sum_probs=116.0
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC------CcEEEEEEEEEcC---
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD------QSTFYAQVVGHDQ--- 231 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~------g~~~~~~v~~~d~--- 231 (359)
...|.+|.|.... ....++|.+|+++ ||||+|||+.....+.|++.. +..+..+-+..++
T Consensus 103 ~~~Pw~v~l~~~~----------~~~~CgGtLIs~~-~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~ 171 (317)
T 3h5c_B 103 QDLPWQVKLTNSE----------GKDFCGGVIIREN-FVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYD 171 (317)
T ss_dssp TCCTTEEEEECSS----------SCEEEEEEEEETT-EEEECHHHHHSCSSCEEEECTTSCTTSCEEEEEEEEEECTTCB
T ss_pred CCCCcEEEEeccC----------CceeeeeEEeeCC-EEEEChHhcCcCCceEEEEeeecCCCCcEEEEeeEEEECCCCC
Confidence 3568888886421 1236999999987 999999999777777777742 2345555455554
Q ss_pred ----CCCEEEEEEcCCCC---CccceEecCCC----CCCCCCEEEEEecCCCC---CCceeEeEEeeeecc-----cCCc
Q 018198 232 ----VNDLAVLHIDAPNH---ELRPIHVSVSA----DLRVGKKIYAIGHPLGW---SFTCTTGVISALDRE-----IPGR 292 (359)
Q Consensus 232 ----~~DlAll~v~~~~~---~~~~~~l~~~~----~~~~G~~v~~iG~p~~~---~~~~~~G~vs~~~~~-----~~~~ 292 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||.... ...+....+..+... +...
T Consensus 172 ~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~~ 251 (317)
T 3h5c_B 172 ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVT 251 (317)
T ss_dssp TTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCTTCCSSSCCCBCCEEEEECHHHHHHHHTCC
T ss_pred CCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCCCCCCCCccceEEEEEEECHHHHhhhhcCc
Confidence 45999999987543 46677775432 45689999999997521 112222333333211 1111
Q ss_pred ccccEEEEc--ccCCCCCccceeecC-CCe--EEEEEeeecCCCcceeEEEEehHHHHHHHHHHH
Q 018198 293 LIQGVIQID--ASVNLGNSGGPLLDS-SGS--LIGVNTFITSGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 293 ~~~~~i~~~--~~~~~G~SGgPl~~~-~G~--viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
....+++.. ...+.|+|||||+-. +|+ ++||++++.......-+.+..+...+.|+++.+
T Consensus 252 ~~~~~~Ca~~~~~~~~gDsGgPl~~~~~~~~~l~Gi~S~g~~~~~~~p~vyt~V~~y~~WI~~~i 316 (317)
T 3h5c_B 252 VTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQAHMVLVTKVSRYSLWFKQIM 316 (317)
T ss_dssp CCTTEEEEECSCCCCCCCTTCEEEEEETTEEEEEEEECCCCSSCCTTEEEEEEGGGCHHHHHHHH
T ss_pred CCCceeECCCCCCCcCCCCCCCEEEecCCEEEEEEEEEECCCCCCCcceEEEEhHHhHHHHHHHh
Confidence 223455553 234579999999954 454 999999865222233456778888888888765
|
| >1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-12 Score=108.61 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=105.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCC--EEEecccccCCCCeEEEEecCCcEEE-----EEEEEEcCCCC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFY-----AQVVGHDQVND 234 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~-----~~v~~~d~~~D 234 (359)
...+||.|...+ .-.|.|+.+..+| ++|||+||+.+.........+++.++ ......|+..|
T Consensus 14 ~P~svv~l~~~d-----------~h~G~g~~V~~~G~~~LlTA~Hv~~~~~~~~~~~k~g~~ip~~~~~~~~~~~d~~~D 82 (191)
T 1zyo_A 14 EPASLVAIKSGP-----------TTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQVSVEDWEISMSSSDKMLD 82 (191)
T ss_dssp SCSSEEEEEETT-----------EEEEEEEEEEC--CEEEEECHHHHTSSSCCCEEEETTEEEECCSCEEEEEECCTTTC
T ss_pred CCCeEEEEEeCC-----------eEEEEEEEEEECCCcEEEEChhhCcCCcceeeecCCCCEEEcccceeeEccCCCCCc
Confidence 334588887632 2279999996444 89999999977532222234555544 33334467899
Q ss_pred EEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccc
Q 018198 235 LAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGG 311 (359)
Q Consensus 235 lAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGg 311 (359)
+||+++.+... ....+.+. ....++.|.++|+|.........|+.... .. ...+++++.+.+|.||+
T Consensus 83 ~all~vp~~~~s~lg~~~a~~~---~~~~~~~vt~yg~~~~~~~~s~~g~~~~~----~~---~~~~~~~~~T~~G~SGs 152 (191)
T 1zyo_A 83 FAIVRVPTHVWSKLGVKSTPLV---CPSSKDVITCYGGSSSDCLMSGVGSSSTS----EF---TWKLTHTCPTAAGWSGT 152 (191)
T ss_dssp EEEEECCHHHHHHHTCCCCCBC---CCCSCEEEEEEEESSTTSEEEEEEEEEEC----SS---TTEEEECCCCCTTCTTC
T ss_pred EEEEEcCCChhhhcCcceeEee---cCCCCccEEEEeecCCCCEeecccceeec----cC---CcEEEEEcCCCCCCCCC
Confidence 99999986321 23444442 23368999999998754444444422211 11 24688899999999999
Q ss_pred eeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHH
Q 018198 312 PLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGI 347 (359)
Q Consensus 312 Pl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~ 347 (359)
|+||.+ .+|||+...... ...|.++-+..++.+
T Consensus 153 P~~ng~-~IVGvh~G~~~~--~~~N~a~n~~~~~~~ 185 (191)
T 1zyo_A 153 PLYSSR-GVVGMHVGFEEI--GKLNRGVNMFYVANY 185 (191)
T ss_dssp EEECSS-CEEEEEEEEEET--TTEEEEECHHHHHHH
T ss_pred cEEcCC-eEEEEEeCcccC--CceeeeeehHHHhhh
Confidence 999865 788999987532 346778888887775
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-14 Score=140.17 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=89.9
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeee-eeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMAC-GIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g-~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+|++++|+++|+|++++|+|||++||+|.++| +++++++.+.+ .+.......|..++|+++|+.+|+++++..|+
T Consensus 193 ~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~-~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~--- 268 (400)
T 3nmy_A 193 SPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAE-QMAFLQNSIGGVQGPFDSFLALRGLKTLPLRM--- 268 (400)
T ss_dssp HHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHH-HHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHH---
T ss_pred ccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHH---
Confidence 46788999999999999999999999999999 77776666544 34455667899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++++++++|++++.|.+|.|.
T Consensus 269 --~~~---------~~~a~~l~~~L~~~p~v~~V~~p 294 (400)
T 3nmy_A 269 --RAH---------CENALALAQWLETHPAIEKVIYP 294 (400)
T ss_dssp --HHH---------HHHHHHHHHHHTTCTTEEEEECT
T ss_pred --HHH---------HHHHHHHHHHHHcCCCEeEEECC
Confidence 888 99999999999999999999986
|
| >2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=118.78 Aligned_cols=191 Identities=16% Similarity=0.145 Sum_probs=117.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC----CeEEEEecC-----------CcEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA----STVKVSFSD-----------QSTFYAQ 225 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~----~~~~v~~~~-----------g~~~~~~ 225 (359)
.-.|.+|.|......... ......|.|.+|+++ ||||||||+.+. ..+.|++.. ...+..+
T Consensus 140 ~e~PW~v~l~~~~~~~~~---~~~~~~CGGsLIs~~-~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~ 215 (394)
T 2b9l_A 140 GEFPWMVAVLKANVIPGS---GEEQLVCGGSLIAPS-VVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIR 215 (394)
T ss_dssp TSSTTEEEEEECC---------CCSEEEEEEEEETT-EEEECHHHHGGGTTCGGGEEEEESCCBTTCCCSSSCCEEEEEE
T ss_pred CCCCcEEEEeeccccccc---cccceEeeEEEEeCC-EEEeccceecCCCCCcccEEEEeceeeccCCcCCCccEEEEEE
Confidence 346888888653211000 011247999999987 999999999643 457777742 1233444
Q ss_pred EEEEcC-------CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-------CceeEeEEeeeecc
Q 018198 226 VVGHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-------FTCTTGVISALDRE 288 (359)
Q Consensus 226 v~~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-------~~~~~G~vs~~~~~ 288 (359)
-+..++ .+|||||+++.+.. .+.++.|........++.+++.||..... ..+....+..+...
T Consensus 216 ~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t~~~~~~~~s~~L~~~~v~iv~~~ 295 (394)
T 2b9l_A 216 QVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRD 295 (394)
T ss_dssp EEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTTTTTCTTSSCCBCEEEEECEECHH
T ss_pred EEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCccCCCCCcccccceEEEEEEECHH
Confidence 444444 35999999987542 46778886544455678999999975321 22333333333221
Q ss_pred cC---------C---cccccEEEEc----ccCCCCCccceeecC----CC--eEEEEEeeecCCCc-ceeEEEEehHHHH
Q 018198 289 IP---------G---RLIQGVIQID----ASVNLGNSGGPLLDS----SG--SLIGVNTFITSGAF-SGIGFALPIDTVR 345 (359)
Q Consensus 289 ~~---------~---~~~~~~i~~~----~~~~~G~SGgPl~~~----~G--~viGi~~~~~~~~~-~~~~~aip~~~i~ 345 (359)
.. + .....+++.. ...|.|||||||+-. +| .++||++++..-+. ..-+...-+...+
T Consensus 296 ~C~~~~~~~~~~~~~~i~~~~iCAg~~~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~PgVYT~V~~y~ 375 (394)
T 2b9l_A 296 KCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFR 375 (394)
T ss_dssp HHHHHHHTTTTCTTCCCCTTEEEECCBSSCSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSSCEEEEEGGGGH
T ss_pred HHHHHHhhcccccceecCCCEEEeeCCCCCcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCCCeEEEEHHHhH
Confidence 11 0 1123556663 357899999999942 23 69999999862211 1235667788888
Q ss_pred HHHHHHHhcC
Q 018198 346 GIVDQLVKFS 355 (359)
Q Consensus 346 ~~l~~l~~~g 355 (359)
.|+++.++.-
T Consensus 376 ~WI~~~i~~~ 385 (394)
T 2b9l_A 376 NWIDQEMQAK 385 (394)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 8888776643
|
| >1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-12 Score=117.33 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=104.3
Q ss_pred eEEEEEEeCCCEEEecccccCC-------CCeEEEEecCCc--------EEEEEEEEEcC----------CCCEEEEEEc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICG-------ASTVKVSFSDQS--------TFYAQVVGHDQ----------VNDLAVLHID 241 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~-------~~~~~v~~~~g~--------~~~~~v~~~d~----------~~DlAll~v~ 241 (359)
.|.|.+|+++ ||||||||+.. ...+.|.+.... .+..+-+..++ .+|||||+++
T Consensus 112 ~CgGsLIs~~-~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~ 190 (329)
T 1md8_A 112 RGGGALLGDR-WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 190 (329)
T ss_dssp EEEEEEETTT-EEEECGGGTSCTTC-----CCCCEEESCSBHHHHHHHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEES
T ss_pred CcceEEecCC-EEEecCCEEEeCCcccCCCceEEEEeccccccccccccceeeEEEEECCCcccccCCCCCccEEEEEEC
Confidence 6999999987 99999999963 234556664321 12233333332 3599999998
Q ss_pred CCCC---CccceEecCCCC-CCCCCEEEEEecCCCCC---CceeEeEEeeeecccC----------CcccccEEEEc---
Q 018198 242 APNH---ELRPIHVSVSAD-LRVGKKIYAIGHPLGWS---FTCTTGVISALDREIP----------GRLIQGVIQID--- 301 (359)
Q Consensus 242 ~~~~---~~~~~~l~~~~~-~~~G~~v~~iG~p~~~~---~~~~~G~vs~~~~~~~----------~~~~~~~i~~~--- 301 (359)
.+.. .+.|+.|..... ...|..+++.||..... ..+....+..+..... ......+++..
T Consensus 191 ~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~ 270 (329)
T 1md8_A 191 NSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 270 (329)
T ss_dssp SCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSSBCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTT
T ss_pred CcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCCCCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCC
Confidence 7643 467777764332 35789999999975322 2233333333321111 01123567763
Q ss_pred --ccCCCCCccceeecC---CC--eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 302 --ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 302 --~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
...|.|||||||+-. ++ .++||+|++..-+ ...+...-+...+.|+++.++
T Consensus 271 ~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~-~~~gvyT~V~~y~~WI~~~i~ 328 (329)
T 1md8_A 271 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCS-RGYGFYTKVLNYVDWIKKEME 328 (329)
T ss_dssp CSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSSS-SSCEEEEEGGGTHHHHHHHHH
T ss_pred CCCcCCCCccccceEEEECCCCcEEEEEEEEECCCcC-CCCcEEEEHHHHHHHHHHHHh
Confidence 357899999999842 23 5999999986322 234677888888888887664
|
| >2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-11 Score=107.85 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=111.9
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVG 228 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~ 228 (359)
...|.+|.|........ ....|.|.||+++ ||||||||+.+. ..+.+.+.. +..+..+-+.
T Consensus 33 ~~~Pw~v~l~~~~~~~~------~~~~CgGsLIs~~-~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~ 105 (276)
T 2vnt_A 33 ENQPWFAAIYRRHRGGS------VTYVCGGSLMSPC-WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLI 105 (276)
T ss_dssp GGSTTEEEEEEECSSSC------EEEEEEEEEEETT-EEEECGGGTTTCCCGGGEEEEESCCBSSSCCTTCEEEEEEEEE
T ss_pred CCCCcEEEEEEecCCCc------ceeEEEEEEeeCC-EEEECcccccCCCCCccEEEEeeeeeccCCCCceEEEEEEEEE
Confidence 34688999876432211 1236999999987 999999999653 335555421 2234444444
Q ss_pred EcC---------CCCEEEEEEcCCC-------CCccceEecCC-CCCCCCCEEEEEecCCCCCC------ceeEeEEeee
Q 018198 229 HDQ---------VNDLAVLHIDAPN-------HELRPIHVSVS-ADLRVGKKIYAIGHPLGWSF------TCTTGVISAL 285 (359)
Q Consensus 229 ~d~---------~~DlAll~v~~~~-------~~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~ 285 (359)
.++ ++|||||+++.+. ..+.++.|... ..+..|+.+.+.||...... ......+..+
T Consensus 106 ~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~ 185 (276)
T 2vnt_A 106 LHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLI 185 (276)
T ss_dssp ECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEE
T ss_pred EccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccCCCCcchhheeeeeeEe
Confidence 443 3599999997532 24566666432 35677899999998754221 1222222222
Q ss_pred ecccC-------CcccccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCCcc-eeEEEEehHHHHHHHH
Q 018198 286 DREIP-------GRLIQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAFS-GIGFALPIDTVRGIVD 349 (359)
Q Consensus 286 ~~~~~-------~~~~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~~-~~~~aip~~~i~~~l~ 349 (359)
..... .......++.. ...|.|||||||+-. +| .++||.|++..-+.. .-+.+.-+...+.|++
T Consensus 186 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~ 265 (276)
T 2vnt_A 186 SHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 265 (276)
T ss_dssp CHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHH
T ss_pred cHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
Confidence 21111 11112233332 347899999999843 34 499999998632211 2255677888899998
Q ss_pred HHHhc
Q 018198 350 QLVKF 354 (359)
Q Consensus 350 ~l~~~ 354 (359)
+.++.
T Consensus 266 ~~~~~ 270 (276)
T 2vnt_A 266 SHTKE 270 (276)
T ss_dssp HHHSC
T ss_pred HHhhh
Confidence 87764
|
| >1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=116.66 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=115.1
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC----CCeEEEEecC-------CcEEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG----ASTVKVSFSD-------QSTFYAQVVGH 229 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~----~~~~~v~~~~-------g~~~~~~v~~~ 229 (359)
...|..|.|.. . ..+.|.+|+++ ||||||||+.+ ...+.|++.. ...+..+-+..
T Consensus 171 ~~~Pw~v~l~~-----~--------~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~~V~~G~~~~~~~~~~~~~v~~i~~ 236 (403)
T 1zjk_A 171 GDFPWQVLILG-----G--------TTAAGALLYDN-WVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFI 236 (403)
T ss_dssp TSSTTEEEEEE-----S--------CCEEEEEETTT-EEEECHHHHGGGTTCSTTEEEEESCSBTTCSCCEEEEEEEEEE
T ss_pred CCcCCEeEecc-----C--------CceEEEEecCC-EEEEcHHhCCCCCCCcceEEEEccccccCCCCceEEeEEEEEE
Confidence 34678888864 1 25999999987 99999999954 4567777743 12344443444
Q ss_pred cC--------CCCEEEEEEcCCCC---CccceEecCCCC---CCCCCEEEEEecCCCCC----CceeEeEEeeeeccc--
Q 018198 230 DQ--------VNDLAVLHIDAPNH---ELRPIHVSVSAD---LRVGKKIYAIGHPLGWS----FTCTTGVISALDREI-- 289 (359)
Q Consensus 230 d~--------~~DlAll~v~~~~~---~~~~~~l~~~~~---~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~-- 289 (359)
++ .+|||||+++.+.. .+.|+.|..... +..|+.+++.||..... ..+....+..+....
T Consensus 237 Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~v~~~~~C~ 316 (403)
T 1zjk_A 237 HEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCT 316 (403)
T ss_dssp CTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSSCCCSBCEEEEEEEECHHHHH
T ss_pred CCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCCccCcccEEEEEeEeCHHHHh
Confidence 32 46999999987643 467777754332 56799999999975432 223333333332111
Q ss_pred ---CC------cccccEEEEc-----ccCCCCCccceeecC---CC--eEEEEEeeecCCCc--ceeEEEEehHHHHHHH
Q 018198 290 ---PG------RLIQGVIQID-----ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAF--SGIGFALPIDTVRGIV 348 (359)
Q Consensus 290 ---~~------~~~~~~i~~~-----~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~--~~~~~aip~~~i~~~l 348 (359)
.. .....+++.. ...|.|||||||+-. +| .++||+|++..+.. ..-+....+...+.|+
T Consensus 317 ~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~WI 396 (403)
T 1zjk_A 317 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396 (403)
T ss_dssp HHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHHH
T ss_pred hhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHH
Confidence 00 1223567763 357899999999853 33 59999999832211 2246677888888888
Q ss_pred HHHHh
Q 018198 349 DQLVK 353 (359)
Q Consensus 349 ~~l~~ 353 (359)
++.++
T Consensus 397 ~~~i~ 401 (403)
T 1zjk_A 397 ENIIS 401 (403)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
|
| >1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=113.70 Aligned_cols=165 Identities=14% Similarity=0.128 Sum_probs=104.2
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCC-------cEEEE---EEEEEc--------------CCCCEEEEEEcC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-------STFYA---QVVGHD--------------QVNDLAVLHIDA 242 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g-------~~~~~---~v~~~d--------------~~~DlAll~v~~ 242 (359)
.|.|.+|+++ ||||||||+.+.....|++... ..... +-+..+ ..+|||||+++.
T Consensus 104 ~CgGsLIs~~-~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~ 182 (333)
T 1elv_A 104 WAGGALINEY-WVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKD 182 (333)
T ss_dssp EEEEEEEETT-EEEECHHHHTTCSSCCEECSCSBCC-------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESS
T ss_pred ceeEEEecCC-EEEehhheeCCCCCCeEEEeeeecccCccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCC
Confidence 6999999987 9999999997755445555321 11112 222222 246999999987
Q ss_pred CCC---CccceEecCCC---CCCCCCEEEEEecCCCCC----CceeEeEEeeeecccC-----C---------cccccEE
Q 018198 243 PNH---ELRPIHVSVSA---DLRVGKKIYAIGHPLGWS----FTCTTGVISALDREIP-----G---------RLIQGVI 298 (359)
Q Consensus 243 ~~~---~~~~~~l~~~~---~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~~~-----~---------~~~~~~i 298 (359)
+.. .+.|+.|.... .+..|+.+++.||..... ..+....+..+..... . .....++
T Consensus 183 ~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 262 (333)
T 1elv_A 183 PVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMI 262 (333)
T ss_dssp CCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCSSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEE
T ss_pred CCcCCCcccceecCCCcccccccCCcEEEEEECcCcCCCCcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeE
Confidence 643 46777775433 245799999999975422 2233333333321110 0 1123566
Q ss_pred EEc----ccCCCCCccceeecC---CC---eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 299 QID----ASVNLGNSGGPLLDS---SG---SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 299 ~~~----~~~~~G~SGgPl~~~---~G---~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
+.. ...|.|+|||||+-. ++ .++||+|++..-+ . .+....+...+.|+++.++.
T Consensus 263 Cag~~~~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C~-~-~~vyt~V~~y~~WI~~~~~~ 326 (333)
T 1elv_A 263 CAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG-T-YGLYTRVKNYVDWIMKTMQE 326 (333)
T ss_dssp EEECSTTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTT-S-EEEEEEGGGGHHHHHHHHHH
T ss_pred CccCCCCCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCCCC-C-CcEEeEHHHHHHHHHHHHhc
Confidence 663 357899999999853 23 4999999986322 2 47778888888888887654
|
| >1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=111.23 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=84.5
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCC-----CEEEecccccCCC----CeEEEEecCC-----------
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQD-----GHIVTNYHVICGA----STVKVSFSDQ----------- 219 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~-----g~vlT~~Hvv~~~----~~~~v~~~~g----------- 219 (359)
+..+++|++|.... ...|+|++|+++ .||||||||+.+. ..+.|.+..+
T Consensus 19 ~~~~~aV~rl~~~g-----------~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~ 87 (268)
T 1arb_A 19 RDIIRAVGAYSKSG-----------TLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPA 87 (268)
T ss_dssp TTGGGGEEEEEETT-----------EEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGG
T ss_pred HHhhceEEEEEeCC-----------ccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccc
Confidence 45678999986421 237999999972 4999999999752 2455555210
Q ss_pred ----------cE-EEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCC---------------
Q 018198 220 ----------ST-FYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGW--------------- 273 (359)
Q Consensus 220 ----------~~-~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~--------------- 273 (359)
.. ....+.+....+||||||++.+.. .+..+++.||....
T Consensus 88 ~~~~~~~~~~~~~v~~~i~h~~~~nDIALLrL~~~v~--------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~ 153 (268)
T 1arb_A 88 SGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAAN--------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVA 153 (268)
T ss_dssp GGSCCCCCCCCEEECEEEEEEETTTTEEEEEESSCCC--------------GGGCCEEBCEECCSCCCSCEEEEECGGGC
T ss_pred cccccCCcceEEeccceEecCCCCCceEEEEecCCCC--------------CCCceEEeCcCccCCCCCcceeeccCCcc
Confidence 11 122344556789999999998531 12334555553221
Q ss_pred CCceeEeEEeeeecccCCcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeec
Q 018198 274 SFTCTTGVISALDREIPGRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 274 ~~~~~~G~vs~~~~~~~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
...+....+..............+++.. ...|.|+|||||+..+++++||++++.
T Consensus 154 l~~i~~~~~~~~~~~~~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~~~~~~Gi~s~g~ 213 (268)
T 1arb_A 154 EKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGP 213 (268)
T ss_dssp SCEEEEECSCCEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTTSCEEEEEEECS
T ss_pred cEEEEeeccccccccccccccCCeEEEeeecCCCCCccCcccCCcEeeCCEEEEEEeecC
Confidence 1111111111000001111113456652 247899999999976889999999985
|
| >2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-11 Score=113.63 Aligned_cols=186 Identities=12% Similarity=0.126 Sum_probs=113.9
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecCC-------------------
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSDQ------------------- 219 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~g------------------- 219 (359)
.-.|.+|.|..... .. ....|.|.+|+++ ||||||||+.+. ..+.|++..-
T Consensus 128 ~e~Pw~v~L~~~~~-g~------~~~~CGGsLIs~~-~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~ 199 (408)
T 2xxl_A 128 SSRPWMALLRYQQF-GE------SRFLCGGAMISER-YILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAP 199 (408)
T ss_dssp TSSTTEEEEEEECS-SS------EEEEEEEEEEETT-EEEECGGGTTTCTTTEEEEEESCSBTTCSCCEEEETTEEEECC
T ss_pred CCCCcEEEEEeecC-Cc------eeEEEEEEEEECC-EEEEcHHhcCCCCCceEEEEeeeeECCCccchhhcccccccCC
Confidence 34578888865321 10 1236999999987 999999999754 4677777421
Q ss_pred --cEEEEEEEEEcC-------CCCEEEEEEcCCCC---CccceEecCCCC----CCCCCEEEEEecCCCCC----CceeE
Q 018198 220 --STFYAQVVGHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVSAD----LRVGKKIYAIGHPLGWS----FTCTT 279 (359)
Q Consensus 220 --~~~~~~v~~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~~~----~~~G~~v~~iG~p~~~~----~~~~~ 279 (359)
..+..+-+..++ .+|||||+++.+.. .+.|+.|..... ...|+.+++.||..... ..+..
T Consensus 200 ~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~~s~~L~~ 279 (408)
T 2xxl_A 200 PVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQ 279 (408)
T ss_dssp CCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBCSCSBCEE
T ss_pred ceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCcCCCCCCCchheE
Confidence 122333334443 35999999987643 467777754322 46789999999975322 22333
Q ss_pred eEEeeeecccC-----CcccccEEEEc----ccCCCCCcccee------ecC-CC--eEEEEEeeecCCCc--ceeEEEE
Q 018198 280 GVISALDREIP-----GRLIQGVIQID----ASVNLGNSGGPL------LDS-SG--SLIGVNTFITSGAF--SGIGFAL 339 (359)
Q Consensus 280 G~vs~~~~~~~-----~~~~~~~i~~~----~~~~~G~SGgPl------~~~-~G--~viGi~~~~~~~~~--~~~~~ai 339 (359)
..+..+..... .......++.. ...|.||||||| +.. +| .++||+|++..+.. ..-+...
T Consensus 280 ~~v~iv~~~~C~~~~~~~~~~~~iCAg~~~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYT 359 (408)
T 2xxl_A 280 ANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYT 359 (408)
T ss_dssp EEEEEECHHHHHHHHTSCCCTTEEEECCSCSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEE
T ss_pred eeeeecCHHHHHHHhcccCCCceEeecCCCCCccCCCcccChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEE
Confidence 33333322111 11112456653 357889999999 532 33 69999999842211 1235667
Q ss_pred ehHHHHHHHHHHHhc
Q 018198 340 PIDTVRGIVDQLVKF 354 (359)
Q Consensus 340 p~~~i~~~l~~l~~~ 354 (359)
-+...+.|+++.++.
T Consensus 360 rVs~y~~WI~~~i~~ 374 (408)
T 2xxl_A 360 NVGEYVQWITDTMAS 374 (408)
T ss_dssp EGGGGHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHhh
Confidence 778888888776553
|
| >1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-11 Score=114.69 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=102.9
Q ss_pred eEEEEEEeCCCEEEecccccCCC-------CeEEEEecCC--------cEEEEEEEEEcC----------CCCEEEEEEc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGA-------STVKVSFSDQ--------STFYAQVVGHDQ----------VNDLAVLHID 241 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~-------~~~~v~~~~g--------~~~~~~v~~~d~----------~~DlAll~v~ 241 (359)
.|.|.+|+++ ||||||||+... ..+.|.+... ..+..+-+..++ .+|||||+++
T Consensus 180 ~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~ 258 (399)
T 1gpz_A 180 RGGGALLGDR-WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 258 (399)
T ss_dssp EEEEEEETTT-EEEECGGGTSCTTC-----CCCEEEESCSBHHHHHHTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEES
T ss_pred CeEEEEeCCC-EEEeChhcccccccccCCcceEEEEeccccccccccccccceEEEEECCCCCcCCCCCCCCcEEEEEEC
Confidence 6999999987 999999999643 2356666431 122233333332 3599999998
Q ss_pred CCCC---CccceEecCCCC-CCCCCEEEEEecCCCC---CCceeEeEEeeeecccC----C------cccccEEEEc---
Q 018198 242 APNH---ELRPIHVSVSAD-LRVGKKIYAIGHPLGW---SFTCTTGVISALDREIP----G------RLIQGVIQID--- 301 (359)
Q Consensus 242 ~~~~---~~~~~~l~~~~~-~~~G~~v~~iG~p~~~---~~~~~~G~vs~~~~~~~----~------~~~~~~i~~~--- 301 (359)
.+.. .+.|+.|..... ...|..+++.||.... ...+....+..+..... . .....+++..
T Consensus 259 ~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~ 338 (399)
T 1gpz_A 259 NSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 338 (399)
T ss_dssp SCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-----CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGG
T ss_pred CcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCCccCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCC
Confidence 7643 467777764332 3578999999997532 12233333333321111 0 1123456653
Q ss_pred --ccCCCCCccceeecC---CC--eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 302 --ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 302 --~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...|.|||||||+-. ++ .++||+|++..-+ .+.+....+...+.|+++.++.
T Consensus 339 ~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C~-~~~~vyt~V~~y~~WI~~~~~~ 397 (399)
T 1gpz_A 339 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCS-RGYGFYTKVLNYVDWIKKEMEE 397 (399)
T ss_dssp GGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTTT-TTEEEEEEGGGGHHHHHHHTC-
T ss_pred CCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCcC-CCCeEEEEhHHhHHHHHHHhcc
Confidence 357899999999842 23 5999999986322 2357778888888988887653
|
| >3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=118.27 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=110.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccC--------CCCeEEEEecCC----------cEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVIC--------GASTVKVSFSDQ----------STFY 223 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~--------~~~~~~v~~~~g----------~~~~ 223 (359)
..|..|.|..... ....|.|.||+++ ||||||||+. ....+.|++... ....
T Consensus 176 ~~Pw~v~l~~~~~---------~~~~CGGsLIs~~-~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~~ 245 (424)
T 3nxp_A 176 MSPWQVMLFRKSP---------QELLCGASLISDR-WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM 245 (424)
T ss_dssp SCTTEEEEEETTT---------TEEEEEEEESSSS-EEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEC
T ss_pred CCCCEEEEeecCC---------CCccceeEEEcCC-EEEEhHHhcCccccccccCcccEEEEeCcccccccCCCceeEEE
Confidence 3467777753210 1236999999987 9999999984 234577777421 1222
Q ss_pred EEEEEEcC--------CCCEEEEEEcCCCC---CccceEecCCCC----CCCCCEEEEEecCCC---------C--CCce
Q 018198 224 AQVVGHDQ--------VNDLAVLHIDAPNH---ELRPIHVSVSAD----LRVGKKIYAIGHPLG---------W--SFTC 277 (359)
Q Consensus 224 ~~v~~~d~--------~~DlAll~v~~~~~---~~~~~~l~~~~~----~~~G~~v~~iG~p~~---------~--~~~~ 277 (359)
.+-+..++ .+|||||+++.+.. .+.++.|..... +..|..+++.||... . ...+
T Consensus 246 V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~~~L 325 (424)
T 3nxp_A 246 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL 325 (424)
T ss_dssp EEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CCSBC
T ss_pred EEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCCccc
Confidence 33333333 35999999987542 466777753221 357899999999731 1 2233
Q ss_pred eEeEEeeeeccc-----CCcccccEEEEc--------ccCCCCCccceeecC---CC--eEEEEEeeecCCCc-ceeEEE
Q 018198 278 TTGVISALDREI-----PGRLIQGVIQID--------ASVNLGNSGGPLLDS---SG--SLIGVNTFITSGAF-SGIGFA 338 (359)
Q Consensus 278 ~~G~vs~~~~~~-----~~~~~~~~i~~~--------~~~~~G~SGgPl~~~---~G--~viGi~~~~~~~~~-~~~~~a 338 (359)
....+..+.... .......+++.. ...|.|+|||||+-. +| .++||+|++..-+. ..-+.+
T Consensus 326 ~~~~v~ii~~~~C~~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~pgVy 405 (424)
T 3nxp_A 326 QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 405 (424)
T ss_dssp EEEEEEBCCHHHHHHTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCSCEEE
T ss_pred eEEEeeEEcHHHhhhhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCCCEEE
Confidence 344443332211 111223567763 267899999999843 34 69999999863211 123556
Q ss_pred EehHHHHHHHHHHHh
Q 018198 339 LPIDTVRGIVDQLVK 353 (359)
Q Consensus 339 ip~~~i~~~l~~l~~ 353 (359)
.-+...+.|+++.++
T Consensus 406 T~Vs~y~~WI~~~i~ 420 (424)
T 3nxp_A 406 THVFRLKKWIQKVID 420 (424)
T ss_dssp EECTTCHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHH
Confidence 777777777776554
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-13 Score=131.55 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|++++|+++|+|++++|+|||++||+|+++|.++++++.+.+ .+......+|+.++|+++|+.+|+++++..|+
T Consensus 207 ~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~-~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~---- 281 (414)
T 3ndn_A 207 TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDG-PVQKLMRHTGPAMSAFNAWVLLKGLETLAIRV---- 281 (414)
T ss_dssp HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHH----
T ss_pred ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH----
Confidence 4667899999999999999999999999999999998766542 33345567899999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++++++++|++++.|.+|.|.
T Consensus 282 -~~~---------~~~a~~l~~~L~~~p~v~~v~~p 307 (414)
T 3ndn_A 282 -QHS---------NASAQRIAEFLNGHPSVRWVRYP 307 (414)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHhcCCCEeEEECC
Confidence 888 89999999999999999999885
|
| >4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=117.33 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=114.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~~ 229 (359)
..|.+|.|.... ....++|.||+++ ||||||||+... ..+.|.+.. ...+...-+..
T Consensus 572 ~~PW~VsL~~~~----------~~~~CGGSLIs~~-wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~ 640 (791)
T 4dur_A 572 SWPWQVSLRTRF----------GMHFCGGTLISPE-WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFL 640 (791)
T ss_dssp SSTTEEEEECTT----------SCEEEEEEEEETT-EEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEE
T ss_pred CCCeEEEEEecC----------CCeEEEEEEEeCC-EEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEEC
Confidence 457788875321 1237999999987 999999999653 346666632 12333333333
Q ss_pred c-CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC----CCceeEeEEeeeeccc-------CCcc
Q 018198 230 D-QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW----SFTCTTGVISALDREI-------PGRL 293 (359)
Q Consensus 230 d-~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~-------~~~~ 293 (359)
+ ..+|||||+++.+.. .+.++.|.... .+..|..+++.||.... ...+....+..+.... ....
T Consensus 641 hp~~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~~~~s~~L~~~~v~ii~~~~C~~~~~~~~~i 720 (791)
T 4dur_A 641 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRV 720 (791)
T ss_dssp CTTCCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC---CCTTBCEEEEEEEECHHHHTSTTTTTTCC
T ss_pred CCCCCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCCCCCCCeeEEEEEEEeCHHHhhcccccCCCC
Confidence 4 357999999987542 46677775432 45678999999997532 1223333333332111 1122
Q ss_pred cccEEEEc-----ccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...+++.. ...+.|+|||||+-. +| .|+||++++..-+. ..-+...-+...+.++++.++.
T Consensus 721 ~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~~i~~ 790 (791)
T 4dur_A 721 QSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 790 (791)
T ss_dssp CTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHHHHHHH
T ss_pred CCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHHh
Confidence 33556653 356889999999954 23 59999999863221 2236677888889998887763
|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=119.54 Aligned_cols=187 Identities=16% Similarity=0.119 Sum_probs=112.0
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC-CcEEEEEEEEEcC-------
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD-QSTFYAQVVGHDQ------- 231 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~-g~~~~~~v~~~d~------- 231 (359)
.|..|.|....... ....|.|.+|+++ ||||+|||+... ..+.|.+.. ...+..+-+..++
T Consensus 226 ~Pw~v~l~~~~~~~-------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~v~~i~~Hp~y~~~~~ 297 (497)
T 1rrk_A 226 QPWQAKISVIRPSK-------GHESCMGAVVSEY-FVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGK 297 (497)
T ss_dssp STTEEEEEECC--C-------CCEEEEEEECSSS-EEEECGGGCCTTCCGGGEEEEETTCSSCEEEEEEEECTTCCTTTT
T ss_pred cCcEEEEEEEcCCC-------CCceeEEEEecCC-EEEECHHhCCCCCCceEEEEEeCCccceeeeEEEEeCCCcccccc
Confidence 57888886532211 1237999999987 999999999753 467888764 2345544444332
Q ss_pred ---------CCCEEEEEEcCCCC---CccceEecCCC------CCCCCCEEEEEecCCCC------------CCceeEeE
Q 018198 232 ---------VNDLAVLHIDAPNH---ELRPIHVSVSA------DLRVGKKIYAIGHPLGW------------SFTCTTGV 281 (359)
Q Consensus 232 ---------~~DlAll~v~~~~~---~~~~~~l~~~~------~~~~G~~v~~iG~p~~~------------~~~~~~G~ 281 (359)
.+|||||+++.+.. .+.|+.|.... .+..|..+++.||.... ...+....
T Consensus 298 ~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~ 377 (497)
T 1rrk_A 298 KEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE 377 (497)
T ss_dssp GGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeee
Confidence 35999999987643 46777875422 24456665555542111 11222222
Q ss_pred Eeeee------cc--------cC------CcccccEEEEcc-------cCCCCCccceeecC-CC--eEEEEEeeecC-C
Q 018198 282 ISALD------RE--------IP------GRLIQGVIQIDA-------SVNLGNSGGPLLDS-SG--SLIGVNTFITS-G 330 (359)
Q Consensus 282 vs~~~------~~--------~~------~~~~~~~i~~~~-------~~~~G~SGgPl~~~-~G--~viGi~~~~~~-~ 330 (359)
+.-+. +. +. ......++|... ..|.|+|||||+-. +| .++||+|++.. +
T Consensus 378 v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~~~ 457 (497)
T 1rrk_A 378 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDV 457 (497)
T ss_dssp EEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCC
T ss_pred EEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEeCCEEEEEEEEEecCCCC
Confidence 22221 10 00 012235677642 47899999999943 34 49999999862 2
Q ss_pred Cc--------cee--EEEEehHHHHHHHHHHHhcCcc
Q 018198 331 AF--------SGI--GFALPIDTVRGIVDQLVKFSRY 357 (359)
Q Consensus 331 ~~--------~~~--~~aip~~~i~~~l~~l~~~g~v 357 (359)
+. .+. ++..-+...+.|+++.++...+
T Consensus 458 C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~~~ 494 (497)
T 1rrk_A 458 CKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDL 494 (497)
T ss_dssp C--------CCTTCEEEEEEGGGGHHHHHHHTTTSSC
T ss_pred CCCccccCCCCCccceeeeeHHHHHHHHHHHhCcccc
Confidence 21 111 2566788899999988776543
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-12 Score=128.20 Aligned_cols=101 Identities=25% Similarity=0.297 Sum_probs=87.5
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
++|+.++|+++|+|++++|+|||++||+|+++|.++++++.+. .+.......|+.++|+++|+..||++++..|+
T Consensus 240 ~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~--~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~--- 314 (445)
T 1qgn_A 240 ATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVS--EIRNLHHILGGALNPNAAYLIIRGMKTLHLRV--- 314 (445)
T ss_dssp TCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHH---
T ss_pred cccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHH--HHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHH---
Confidence 3577889999999999999999999999999999998765432 23344456789999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.+ .+++++++++|++++.|.+|.+.
T Consensus 315 --~~~---------~~~a~~l~~~L~~~p~v~~v~~p 340 (445)
T 1qgn_A 315 --QQQ---------NSTALRMAEILEAHPKVRHVYYP 340 (445)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred --HHH---------HHHHHHHHHHHhcCCCceEEECC
Confidence 888 88999999999999999888874
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-12 Score=124.54 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|.++|.++++++.+ + .+.......|+.++|+++|+.+|+++++..|+
T Consensus 210 ~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~-~-~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~r~---- 283 (415)
T 2fq6_A 210 AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW-E-QLRENAYLMGQMVDADTAYITSRGLRTLGVRL---- 283 (415)
T ss_dssp TTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTH-H-HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH----
T ss_pred ccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHH-H-HHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHH----
Confidence 57788999999999999999999999999999999877543 2 33334455799999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++.+++++|++++.+.++.+.
T Consensus 284 -~~~---------~~n~~~l~~~L~~~~~v~~v~~p 309 (415)
T 2fq6_A 284 -RQH---------HESSLKVAEWLAEHPQVARVNHP 309 (415)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECC
Confidence 888 89999999999999988888764
|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-11 Score=123.07 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC---CCeEEEEecC-CcEEEEEEEEEcC-------
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG---ASTVKVSFSD-QSTFYAQVVGHDQ------- 231 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~---~~~~~v~~~~-g~~~~~~v~~~d~------- 231 (359)
.|..|.|....... ....|+|.+|+++ ||||+|||+.. ...+.|.+.. ...+..+-+..++
T Consensus 468 ~Pw~~~v~~~~~~~-------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~v~~i~~Hp~y~~~~~ 539 (741)
T 3hrz_D 468 QPWQAKISVIRPSK-------GHESCMGAVVSEY-FVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGK 539 (741)
T ss_dssp CTTEEEEEECCCC------------EEEEECSSS-EEEECGGGCC-----CCEEEEETTCSCCEEEEEEEECTTCCTTTT
T ss_pred cCCeEEEEEEeCCC-------CCCEEEEEEecCC-EEEEchhhccccCCcceEEEEeCCCceEEEEEEEEECCCCCcccc
Confidence 56666665532111 1246999999987 99999999964 3467787763 3445555444443
Q ss_pred ---------CCCEEEEEEcCCCC---CccceEecCC------CCCCCCCEEEEEecCCCCCC------------ceeEeE
Q 018198 232 ---------VNDLAVLHIDAPNH---ELRPIHVSVS------ADLRVGKKIYAIGHPLGWSF------------TCTTGV 281 (359)
Q Consensus 232 ---------~~DlAll~v~~~~~---~~~~~~l~~~------~~~~~G~~v~~iG~p~~~~~------------~~~~G~ 281 (359)
.+|||||+++.+.. .+.++.|... ..+..|..+.+.||...... .+....
T Consensus 540 ~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~ 619 (741)
T 3hrz_D 540 KEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE 619 (741)
T ss_dssp GGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEE
T ss_pred cccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceeccccccccccce
Confidence 35999999987542 4667777522 12456777777776432211 122222
Q ss_pred Eeeee---c-----------cc------CCcccccEEEEc-------ccCCCCCccceeecC-CC--eEEEEEeeec-CC
Q 018198 282 ISALD---R-----------EI------PGRLIQGVIQID-------ASVNLGNSGGPLLDS-SG--SLIGVNTFIT-SG 330 (359)
Q Consensus 282 vs~~~---~-----------~~------~~~~~~~~i~~~-------~~~~~G~SGgPl~~~-~G--~viGi~~~~~-~~ 330 (359)
+.... + .+ .......+++.. ...|.|||||||+-. +| .++||+|++. .+
T Consensus 620 v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~~~~~~lvGIvS~G~~~~ 699 (741)
T 3hrz_D 620 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDV 699 (741)
T ss_dssp EEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESSCC
T ss_pred eEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEeeCCeEEEEEEEeecCCcc
Confidence 22221 0 00 011223567763 347889999999954 33 3999999986 12
Q ss_pred Ccc-----ee-----EEEEehHHHHHHHHHHHhcC
Q 018198 331 AFS-----GI-----GFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 331 ~~~-----~~-----~~aip~~~i~~~l~~l~~~g 355 (359)
... .- ++...+...+.|+++.++..
T Consensus 700 C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~ 734 (741)
T 3hrz_D 700 CKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734 (741)
T ss_dssp CC------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred cCCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence 211 11 67788999999999988763
|
| >2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=117.74 Aligned_cols=183 Identities=18% Similarity=0.182 Sum_probs=106.0
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC---------CcEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD---------QSTFYAQVVG 228 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~---------g~~~~~~v~~ 228 (359)
...|.+|.|...... ....+.|.||+++ ||||+|||+.+. ..+.|.+.. +..+..+-+.
T Consensus 397 ~~~Pw~v~L~~~~~~--------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~V~~ii 467 (625)
T 2f83_A 397 GEWPWQVTLHTTSPT--------QRHLCGGSIIGNQ-WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII 467 (625)
T ss_dssp TSSTTEEEEEECSSS--------SEEEEEEEECSSS-EEEECGGGGSSCCCGGGEEEEESCSBGGGCCSSCCCEEEEEEE
T ss_pred CCCCeEEEEEEecCC--------CcEEEEEEEECCC-EEEEcHHhCCCCCCCceEEEEEEeccCCCCCCCceEEeEEEEE
Confidence 346788888653211 1247999999987 999999999653 346676632 2234444445
Q ss_pred EcC-------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCC-----CCceeEeEEeeeecc----
Q 018198 229 HDQ-------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGW-----SFTCTTGVISALDRE---- 288 (359)
Q Consensus 229 ~d~-------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~---- 288 (359)
.++ .+|||||+++.+.. .+.|+.|.... ....++.+++.||.... ...+....+..+...
T Consensus 468 ~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~~L~~~~v~i~~~~~C~~ 547 (625)
T 2f83_A 468 IHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK 547 (625)
T ss_dssp ECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCSBCBCCEECCCCHHHHHT
T ss_pred ECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCcccEEEEEEEcCHHHHHH
Confidence 554 35999999987643 45677775432 34568899999997432 112222333222211
Q ss_pred -cCC-cccccEEEE-----cccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHH
Q 018198 289 -IPG-RLIQGVIQI-----DASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 289 -~~~-~~~~~~i~~-----~~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~ 352 (359)
... .....+++. ....+.|||||||+-. +| .++||++++..-.. ..-+...-+...+.|+++.+
T Consensus 548 ~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~~~ 622 (625)
T 2f83_A 548 RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622 (625)
T ss_dssp TCTTSCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEEEEECCC----CCCCEEEEGGGGHHHHHHTC
T ss_pred HhccCCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence 101 011123332 2357889999999953 45 69999999862111 12245667777888887654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-12 Score=121.23 Aligned_cols=101 Identities=25% Similarity=0.412 Sum_probs=89.4
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+|+.++|+++|+|++++|+|||++||+|.++|.++++++.+.+ .+.......|..++|+++|+..++++++..|+
T Consensus 192 ~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~---- 266 (392)
T 3qhx_A 192 SPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQ-SFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRM---- 266 (392)
T ss_dssp CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred ccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHH----
Confidence 5788999999999999999999999999999999988655543 34445556799999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+++ .+++++++++|++++.|.+|.+.
T Consensus 267 -~~~---------~~~~~~l~~~L~~~~~v~~v~~p 292 (392)
T 3qhx_A 267 -QRH---------SENAAAVAEFLAEHPAISTVLYP 292 (392)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHhcCCCcceEECC
Confidence 888 89999999999999999999885
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=112.66 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=89.2
Q ss_pred eEEEEEEeCCCEEEecccccCCC--CeEEEEecC----------CcEEEEEEEEEcC-------CCCEEEEEEcCCCC--
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGA--STVKVSFSD----------QSTFYAQVVGHDQ-------VNDLAVLHIDAPNH-- 245 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~----------g~~~~~~v~~~d~-------~~DlAll~v~~~~~-- 245 (359)
.+.|.||+++ ||||||||+.+. ..+.|.+.. ...+..+-+..++ .+|||||+++.+..
T Consensus 346 ~CGGsLIs~~-~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~ 424 (565)
T 2xrc_A 346 TCGGIYIGGC-WILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKK 424 (565)
T ss_dssp CCCCEEEETT-EEEECHHHHTTCSSCCEEEEC-------------CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSS
T ss_pred eeeEEEEeCC-EEEEChhhcccCCCcceEEEEEEeeccCCCCCccEEEEEEEEEeCCCCCCCcccccceeeeeccccccc
Confidence 6999999987 999999999753 345555531 1223344344443 45999999987532
Q ss_pred -----CccceEecCC-CCCCCCCEEEEEecCCCCC----CceeEeEEeeeec--c-cCCcccc-cEEEEc-----ccCCC
Q 018198 246 -----ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS----FTCTTGVISALDR--E-IPGRLIQ-GVIQID-----ASVNL 306 (359)
Q Consensus 246 -----~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~--~-~~~~~~~-~~i~~~-----~~~~~ 306 (359)
...|+.|... ..+..|+.+++.||..... ..+....+..+.. . +...... .+++.. ...+.
T Consensus 425 ~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~L~~~~v~i~~~C~~~~~~~~~~~~~iCAg~~~g~~d~C~ 504 (565)
T 2xrc_A 425 DCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKFYGNRFYEKEMECAGTYDGSIDACK 504 (565)
T ss_dssp CSCCTTCCCCBCCSCTTSSCTTCEEEEEC-------------CEEEEEECSCTHHHHTTSCCTTTEEEEEEC--------
T ss_pred cccccceeeeecCCcccccCCCCEEEEEeCccCCCCCccceeeEEeeeehHHhHHhhccCcCCCceEEeCCCCCCCccCC
Confidence 2456666533 3356799999999975322 1222233322211 0 1111111 255543 35788
Q ss_pred CCccceeecC--CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 307 GNSGGPLLDS--SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 307 G~SGgPl~~~--~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
|+|||||+-. +| .++||+|++..-+. ..-+...-+...+.|+++.+..
T Consensus 505 GDSGGPLv~~~~~~~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~~WI~~~i~~ 557 (565)
T 2xrc_A 505 GDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVGR 557 (565)
T ss_dssp --CCCEEEEECTTCCEEEEEEECC------CCCCEEEEEGGGGHHHHHHHC--
T ss_pred CccccceEEEeCCCcEEEEEEEeeCCCCCCCCCCEEEEEHHHHHHHHHHHhcc
Confidence 9999999943 44 48999999862111 1235567788888888887654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-12 Score=120.16 Aligned_cols=101 Identities=28% Similarity=0.331 Sum_probs=86.5
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
.+++++|+++|+|++++|+|||++||+++++|.++++++.+.+ .+.......|+.++|+++|+..|+++++..|+
T Consensus 193 ~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~-~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~---- 267 (403)
T 3cog_A 193 SPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHN-RLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRM---- 267 (403)
T ss_dssp CTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred ccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHH----
Confidence 4667799999999999999999999999999999886555433 33344455688899999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.+ .+++++++++|++++.|.++.+.
T Consensus 268 -~~~---------~~n~~~l~~~l~~~~~v~~~~~~ 293 (403)
T 3cog_A 268 -EKH---------FKNGMAVAQFLESNPWVEKVIYP 293 (403)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHhcCCCEEEEECC
Confidence 888 88999999999999999888774
|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=113.30 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=103.1
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC---CeEEEEecC-----CcEEEEEEEEEcC---
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA---STVKVSFSD-----QSTFYAQVVGHDQ--- 231 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~---~~~~v~~~~-----g~~~~~~v~~~d~--- 231 (359)
.|..|.|... ....|.|.+|+++ ||||+|||+.+. ..+.|++.. +..+..+-+..++
T Consensus 235 ~Pw~v~l~~~-----------~~~~CgGsLIs~~-~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~v~~i~~Hp~y~ 302 (509)
T 2odp_A 235 TPWHVTIKPK-----------SQETCRGALISDQ-WVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFD 302 (509)
T ss_dssp CTTEEEEEC---------------CEEEEECSSS-EEEECGGGC--------CEEEECCTTCTTCEEECEEEEEECTTCC
T ss_pred CCcEEEEEeC-----------CCcEEEEEEEcCC-EEEEcHHHcCCCCCcceEEEEeCCcccCCCceeeeEEEEECCCCc
Confidence 4677777531 1236999999987 999999999753 356677643 2334444344332
Q ss_pred -------------CCCEEEEEEcCCCC---CccceEecCCC------CCCCCCEEEEEecCCCCCCc------------e
Q 018198 232 -------------VNDLAVLHIDAPNH---ELRPIHVSVSA------DLRVGKKIYAIGHPLGWSFT------------C 277 (359)
Q Consensus 232 -------------~~DlAll~v~~~~~---~~~~~~l~~~~------~~~~G~~v~~iG~p~~~~~~------------~ 277 (359)
.+|||||+++.+.. .+.|+.|.... ....|..+++.||....... +
T Consensus 303 ~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~ 382 (509)
T 2odp_A 303 VFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKL 382 (509)
T ss_dssp TTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCEE
T ss_pred cccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccccccceeeeecccCcee
Confidence 36999999987643 46777775322 23457766666654221111 1
Q ss_pred eEeEEeeee---cc---------cC------CcccccEEEEc----ccCCCCCccceeecC-CC--eEEEEEeeecC-CC
Q 018198 278 TTGVISALD---RE---------IP------GRLIQGVIQID----ASVNLGNSGGPLLDS-SG--SLIGVNTFITS-GA 331 (359)
Q Consensus 278 ~~G~vs~~~---~~---------~~------~~~~~~~i~~~----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~-~~ 331 (359)
....+..+. +. +. ......++|.. ...|.|+|||||+-. +| .++||+||+.. ++
T Consensus 383 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~G~~~~C 462 (509)
T 2odp_A 383 NINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPC 462 (509)
T ss_dssp EEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECCTTCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCTT
T ss_pred eEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCCCCCCcccCCCccCceEEEECCeEEEEEEEEEcCCCCC
Confidence 111111000 00 00 01223567764 257899999999953 23 49999999862 22
Q ss_pred c-------------cee----EEEEehHHHHHHHHHHHh
Q 018198 332 F-------------SGI----GFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 332 ~-------------~~~----~~aip~~~i~~~l~~l~~ 353 (359)
. .+. .+...+...+.|+++.++
T Consensus 463 ~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~ 501 (509)
T 2odp_A 463 LGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG 501 (509)
T ss_dssp C-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHT
T ss_pred CCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhC
Confidence 1 111 467778888889888765
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-11 Score=114.86 Aligned_cols=106 Identities=11% Similarity=-0.017 Sum_probs=86.0
Q ss_pred CCc-cccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEE--eecCCCCccch-hh-hhhhhccceeeeeE
Q 018198 2 SPV-VLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISV--FVGDESGILSR-ID-GVFTRRNCNIESLG 76 (359)
Q Consensus 2 ~p~-~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~--~~~~~G~~lsp-~~-a~l~~RG~~tl~lr 76 (359)
.++ .++|+++|+|++++|+||+++||+|..+|.++++.+.+.+ +.. ....+|..++| ++ +|+.+||++++..|
T Consensus 223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~--l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r 300 (427)
T 3i16_A 223 EFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEK--TSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHI 300 (427)
T ss_dssp TTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHH--HHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred cccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHH--HHHhcccCccCccCCccHHHHHHHHHHHHHHHHH
Confidence 344 5789999999999999999999999999999988654432 222 45677888888 77 99999999999999
Q ss_pred eecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeeccCCCCCCCc
Q 018198 77 VIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEP 126 (359)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~~~~~~~el 126 (359)
+ +++ .+++..++++|+++.. +| +...+++..++
T Consensus 301 ~-----~~~---------~~~a~~la~~L~~~g~--~V-~p~~~~~~~~~ 333 (427)
T 3i16_A 301 S-----MEA---------LKGAILCSRIMELAGF--EV-MPKYDEKRSDI 333 (427)
T ss_dssp H-----HHH---------HHHHHHHHHHHHHTTC--EE-ESCTTSCCSSS
T ss_pred H-----HHH---------HHHHHHHHHHHHhCCC--ee-cCCCCCCCccE
Confidence 9 888 9999999999999986 66 44344445554
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-11 Score=113.44 Aligned_cols=101 Identities=27% Similarity=0.416 Sum_probs=85.3
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
.++.++|+++|+|++++|+|||++||++.++|.++++++.+.+ .+.......|+.++|+++|+.+++++++..|+
T Consensus 185 ~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~---- 259 (389)
T 3acz_A 185 SPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIA-TIKFYRKDAGSLMAPMDAFLCARGMKTLPIRM---- 259 (389)
T ss_dssp CTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred cccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHH-HHHHHHHhcCCCCCHHHHHHHHcCccHHHHHH----
Confidence 4666789999999999999999999999998999888723332 23334444788999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.+ .+++++++++|++++.+.++.+.
T Consensus 260 -~~~---------~~~~~~l~~~l~~~~~v~~~~~~ 285 (389)
T 3acz_A 260 -QIH---------MENGLKVAKFLEQHEKIVKVNHP 285 (389)
T ss_dssp -HHH---------HHHHHHHHHHHHHCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECC
Confidence 888 88999999999999999888774
|
| >3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-08 Score=83.48 Aligned_cols=163 Identities=12% Similarity=0.174 Sum_probs=107.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC-CeEEEEecCCcEEEEE----EEEEcCCCCEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA-STVKVSFSDQSTFYAQ----VVGHDQVNDLA 236 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~-~~~~v~~~~g~~~~~~----v~~~d~~~DlA 236 (359)
+...|+.+....... ...--|+..+ .||+|++|.++.. ..+.|+...|.-.-.. -+..-+..||.
T Consensus 14 ia~~iC~l~n~sdg~--------~~~l~gigyG--~~iItn~HLf~rnng~L~I~s~hG~f~v~nt~~lki~~i~g~Dii 83 (241)
T 3mmg_A 14 ISACVCLLENSSDGH--------SERLFGIGFG--PYIIANQHLFRRNNGELTIKTMHGEFAVANSTQLQMKPVEGRDII 83 (241)
T ss_dssp HHTTEEEEEEEETTE--------EEEEEEEEET--TEEEECGGGGSSTTCEEEEEETTEEEEEEEGGGSCEEECTBSSCE
T ss_pred hhheEEEEEEEeCCC--------EEEEEEEeEC--CEEEEChhhcccCCCeEEEEECCceEEccCCCceeeEEeCCccEE
Confidence 456778887653211 1234455555 4999999999765 4688888776332111 25556889999
Q ss_pred EEEEcCCCCCccceEec-CCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeec
Q 018198 237 VLHIDAPNHELRPIHVS-VSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLD 315 (359)
Q Consensus 237 ll~v~~~~~~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~ 315 (359)
++|+.. + +||.+-. .-..+..||+|+++|..+...... -.||....... .....+..+...+..|+.|+||++
T Consensus 84 iIrmPk-D--fpPf~~kl~FR~P~~~E~V~lVg~~fq~k~~~--s~vSesS~i~p-~~~~~fWkHwIsT~~G~CGlPlVs 157 (241)
T 3mmg_A 84 VIKMAK-D--FPPFPQKLKFRQPTIKDRVCMVSTNFQQKSVS--SLVSESSHIVH-KEDTSFWQHWITTKDGQAGSPLVS 157 (241)
T ss_dssp EEECCT-T--SCCCCSCCCBCCCCTTCCEEEEEEEECSSCEE--EEEEEEECCEE-CTTSSEEEECBCCCTTCTTCEEEE
T ss_pred EEeCCC-C--CCCcchhcccCCCCCCCeEEEEEeecccCCcc--EEECCcceeEE-cCCCCEEEEEcCCCCCcCCCeEEE
Confidence 999965 2 5555432 235778999999999754433222 22343322211 111367888889999999999998
Q ss_pred C-CCeEEEEEeeecCCCcceeEEEEehH
Q 018198 316 S-SGSLIGVNTFITSGAFSGIGFALPID 342 (359)
Q Consensus 316 ~-~G~viGi~~~~~~~~~~~~~~aip~~ 342 (359)
. ||.+|||++..... ...||+.|+.
T Consensus 158 ~~Dg~IVGiHsl~~~~--~~~N~F~~f~ 183 (241)
T 3mmg_A 158 IIDGNILGIHSLTHTT--NGSNYFVEFP 183 (241)
T ss_dssp TTTCCEEEEEEEEETT--TCCEEEEECC
T ss_pred cCCCcEEEEEecccCC--CCcEEEEcCC
Confidence 7 99999999998744 3457777754
|
| >1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=79.33 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEcC-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHDQ- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d~- 231 (359)
..|..|.|... . ....|+|.+|+++ ||||+|||+.+ ....|.+.. +..+..+-+..++
T Consensus 11 ~~Pw~v~l~~~---~-------~~~~CgGsLIs~~-~VLTAAHC~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 78 (131)
T 1yph_C 11 SWPWQVSLQDK---T-------GFHFCGGSLINEN-WVVTAAHCGVT-TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSK 78 (131)
T ss_dssp SSTTEEEEECT---T-------SCEEEEEEEEETT-EEEECGGGCCC-TTSEEEESCSBTTCSSSCCEEEEEEEEEECTT
T ss_pred CcCcEEEEEeC---C-------CCEEEEEEEeeCC-EEEECHHHCCC-CCeEEEEeEccCCCCCCceEEEEEEEEEeCCC
Confidence 35777877642 1 1236999999987 99999999976 344555521 2234444444443
Q ss_pred ------CCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCC
Q 018198 232 ------VNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPL 271 (359)
Q Consensus 232 ------~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~ 271 (359)
.+|||||+++.+.. .+.|+.|.... .+..|+.+++.||..
T Consensus 79 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~ 128 (131)
T 1yph_C 79 YNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGL 128 (131)
T ss_dssp CCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred CCCCCCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCc
Confidence 46999999987643 46778886443 356899999999964
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-10 Score=107.95 Aligned_cols=106 Identities=15% Similarity=-0.004 Sum_probs=81.8
Q ss_pred CCc-cccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEE--eecCCCCccch-hh-hhhhhccceeeeeE
Q 018198 2 SPV-VLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISV--FVGDESGILSR-ID-GVFTRRNCNIESLG 76 (359)
Q Consensus 2 ~p~-~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~--~~~~~G~~lsp-~~-a~l~~RG~~tl~lr 76 (359)
+++ .++|+++|+|++++|+||+++||++.+||.++++.+...+ +.. .....|..+++ ++ +|+..||++++..|
T Consensus 223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~--l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r 300 (427)
T 3hvy_A 223 EFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQ--ATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHV 300 (427)
T ss_dssp TTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHH--HHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHH--HHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHH
Confidence 344 5799999999999999999999999999999987654422 222 23445655555 44 99999999999999
Q ss_pred eecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeeccCCCCCCCc
Q 018198 77 VIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEP 126 (359)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~~~~~~~el 126 (359)
+ +++ .+++..++++|+++.. +| +...+.+..++
T Consensus 301 ~-----~~~---------~~~a~~la~~L~~~g~--~V-~p~~~~~~~~l 333 (427)
T 3hvy_A 301 T-----IEA---------VKGAVFCARIMELAGF--DV-LPKYNDKRTDI 333 (427)
T ss_dssp H-----HHH---------HHHHHHHHHHHHHTTC--EE-ESCTTSCCSSS
T ss_pred H-----HHH---------HHHHHHHHHHHHhCCC--ee-cCCCCCCCceE
Confidence 9 888 9999999999999875 56 43344444444
|
| >2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-08 Score=79.34 Aligned_cols=121 Identities=14% Similarity=0.227 Sum_probs=79.1
Q ss_pred CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCC--------CCceeEeEEeeeecccC-----Cccc
Q 018198 231 QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGW--------SFTCTTGVISALDREIP-----GRLI 294 (359)
Q Consensus 231 ~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~--------~~~~~~G~vs~~~~~~~-----~~~~ 294 (359)
..+||||||++.+.. .+.++.|... ....|+.+++.||.... ...+....+..+....+ ....
T Consensus 6 ~~nDIALl~L~~~v~~~~~v~picLp~~-~~~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~ 84 (152)
T 2pka_B 6 YSHDLMLLRLQSPAKITDAVKVLELPTQ-EPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPDKVT 84 (152)
T ss_dssp CTTCCEEEEESSCCCCCSSCCCCCCCSS-CCCTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCSSBCC
T ss_pred CCCCEEEEEECCCCcCCCCEEeEECCCC-CCCCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhcCCCC
Confidence 468999999987643 4678888643 34679999999997532 12233333433322111 1122
Q ss_pred ccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 295 QGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 295 ~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..+++.. ...|.|+|||||+- +|+++||++++..+. ...-+....+...+.|+++.++
T Consensus 85 ~~~iCa~~~~~~~~~C~GDsGgPL~~-~g~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~ 149 (152)
T 2pka_B 85 ESMLCAGYLPGGKDTCMGDSGGPLIC-NGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149 (152)
T ss_dssp TTEEEEECTTSSCBCCTTCTTCEEEE-TTEEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CCEEeeccCCCCCcccCCccccceEE-CCEEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence 3567764 25789999999994 689999999983221 1224667778888888887664
|
| >1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-06 Score=75.54 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=109.5
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC-CeEEEEecCCcEEEE----EEEEEcCCCCE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA-STVKVSFSDQSTFYA----QVVGHDQVNDL 235 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~-~~~~v~~~~g~~~~~----~v~~~d~~~Dl 235 (359)
-+...|+.|....... ...--|+... + ||+|++|.++.. ..+.|+...|.-.-. --+..-+..||
T Consensus 21 ~Ia~~ic~l~n~sdg~--------~~~l~gigyG-~-~iItn~HLf~~nnG~L~I~s~hG~f~v~nt~~lki~~i~g~Di 90 (229)
T 1lvm_A 21 PISSTICHLTNESDGH--------TTSLYGIGFG-P-FIITNKHLFRRNNGTLLVQSLHGVFKVKNTTTLQQHLIDGRDM 90 (229)
T ss_dssp HHHTTEEEEEEEETTE--------EEEEEEEEET-T-EEEECGGGGGCCSSEEEEEETTEEEEESCGGGSEEEECTTSSC
T ss_pred hhheEEEEEEeccCCc--------eEEEEEEeEC-C-EEEeChhhhccCCCcEEEEeCCCeEEeCCCCceeeEEeCCccE
Confidence 3456778887653211 1133455555 3 999999999765 678888766522110 02445578999
Q ss_pred EEEEEcCCCCCccceEec-CCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceee
Q 018198 236 AVLHIDAPNHELRPIHVS-VSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLL 314 (359)
Q Consensus 236 All~v~~~~~~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~ 314 (359)
.++|+... +||.+-. .-..+..+|+|+++|.-+...... -.||....... .....+...-..+..|+-|.||+
T Consensus 91 iiIrmPkD---fpPf~~~l~FR~P~~~e~V~lVg~~fq~k~~~--s~vSesS~i~p-~~~~~fWkHwIsT~~G~CGlPlV 164 (229)
T 1lvm_A 91 IIIRMPKD---FPPFPQKLKFREPQREERICLVTTNFQTKSMS--SMVSDTSCTFP-SSDGIFWKHWIQTKDGQCGSPLV 164 (229)
T ss_dssp EEEECCTT---SCCCCSCCCBCCCCTTCEEEEEEEECSSSSCE--EEECCCEECEE-ETTTTEEEECBCCCTTCTTCEEE
T ss_pred EEEeCCCc---CCCcccccccCCCCCCCeEEEEEeEeecCCcc--EEECCcceeEe-cCCCCEeEEEeeCCCCcCCCcEE
Confidence 99999873 4554421 235778999999999755432221 12333221111 01125666777888999999999
Q ss_pred cC-CCeEEEEEeeecCCCcceeEEEEehHH-HHHHHHHHH
Q 018198 315 DS-SGSLIGVNTFITSGAFSGIGFALPIDT-VRGIVDQLV 352 (359)
Q Consensus 315 ~~-~G~viGi~~~~~~~~~~~~~~aip~~~-i~~~l~~l~ 352 (359)
+. ||++|||++..... ...+|+.|+.. +.++|+...
T Consensus 165 s~~Dg~IVGiHsl~~~~--~~~NyF~~f~~~f~~~L~~~~ 202 (229)
T 1lvm_A 165 STRDGFIVGIHSASNFT--NTNNYFTSVPKNFMELLTNQE 202 (229)
T ss_dssp ETTTCCEEEEEEEEETT--SCSEEEEECCTTHHHHHHCGG
T ss_pred ECCCCcEEEEEcccccC--CCeEEEeCCCHHHHHHHhccc
Confidence 87 99999999998643 34577777653 336666543
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-09 Score=104.14 Aligned_cols=100 Identities=37% Similarity=0.508 Sum_probs=83.7
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
.+..+.|+++|+|++++|+|||++||+++++|.++++++.+.+ .+.......|+.++++++|...++++++..|+
T Consensus 258 ~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~-~l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~---- 332 (464)
T 1ibj_A 258 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK-EVYFLQNSEGSGLAPFDCWLCLRGIKTMALRI---- 332 (464)
T ss_dssp CTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH-HHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHH----
T ss_pred ccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHH-HHHHHHHhcCCCCCHHHHHHHHhchhhHHHHH----
Confidence 3556789999999999999999999999999999988644433 23334455788999999999999999999999
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
+.. .+++.+++++|+++..+.++.+
T Consensus 333 -~~~---------~~~~~~l~~~l~~~~~v~~~~~ 357 (464)
T 1ibj_A 333 -EKQ---------QENARKIAMYLSSHPRVKKVYY 357 (464)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTCCEEEC
T ss_pred -HHH---------HHHHHHHHHHHHhCCCceEEEC
Confidence 777 7889999999999988777766
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-09 Score=100.14 Aligned_cols=103 Identities=12% Similarity=-0.077 Sum_probs=75.8
Q ss_pred cccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecC--CCCccchhh--hhhhhccceeeeeEeecc
Q 018198 5 VLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGD--ESGILSRID--GVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 5 ~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~--~G~~lsp~~--a~l~~RG~~tl~lr~~~~ 80 (359)
.++|+++|+|++++|+||+++||++.++|.++++.+.+.+ +...... .|..+++.. +++.+||++++..|+
T Consensus 210 ~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~--l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~--- 284 (409)
T 3jzl_A 210 YQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDL--CGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVT--- 284 (409)
T ss_dssp SCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHH--HHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH---
T ss_pred cCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHH--HHHHhccccccccccccHHHHHHHHHHHhhHHHHH---
Confidence 4689999999999999999999999999999988654422 2221111 222233333 578999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeeccCCCCCCCc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQSSSSSLEP 126 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~~~~~~~el 126 (359)
+++ .+++..++++|+++.. +| +...+++..++
T Consensus 285 --~~~---------~~~a~~la~~L~~~g~--~v-~p~~~~~~~~~ 316 (409)
T 3jzl_A 285 --AQA---------IKGARFTAAMLAEFGV--EA-DPVWDAPRTDL 316 (409)
T ss_dssp --HHH---------HHHHHHHHHHHHHTTC--EE-ESCTTSCCSSS
T ss_pred --HHH---------HHHHHHHHHHHHhCCC--cc-cCCCCCCCccE
Confidence 888 8999999999999875 55 43334444444
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-09 Score=101.80 Aligned_cols=100 Identities=28% Similarity=0.357 Sum_probs=82.9
Q ss_pred CccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecC-CCCccchhhhhhhhccceeeeeEeeccc
Q 018198 3 PVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGD-ESGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 3 p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~-~G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+.+..|+++|+|++++|++|+++||++.++|.++++++.+.+ .+...... .|+.++|+.+|...++++++..|+
T Consensus 192 ~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 266 (398)
T 1gc0_A 192 PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDR-IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRM---- 266 (398)
T ss_dssp HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHH-HHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred cccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHH-HHHHHhhccCCCCCCHHHHHHHHhccchHHHHH----
Confidence 345678899999999999999999999999999887765432 22233344 688999999999999999998888
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.. .++++.+.++|++++.+.++.+.
T Consensus 267 -~~~---------~~~~~~l~~~L~~~~~v~~v~~~ 292 (398)
T 1gc0_A 267 -DRH---------CANAQVLAEFLARQPQVELIHYP 292 (398)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEEEC
T ss_pred -HHH---------HHHHHHHHHHHhcCCCeeEEECC
Confidence 777 88999999999999999888764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-08 Score=97.91 Aligned_cols=100 Identities=26% Similarity=0.376 Sum_probs=82.9
Q ss_pred CccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCC-CCccchhhhhhhhccceeeeeEeeccc
Q 018198 3 PVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE-SGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 3 p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~-G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+.++.|+++|+|++++|+||+++||++.++|.++++++.+.+ .+....... |+.++++.+|...++++++..|+
T Consensus 190 ~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~-~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~---- 264 (404)
T 1e5e_A 190 PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQ-IRMVGIKDITGSVISPHDAWLITRGLSTLNIRM---- 264 (404)
T ss_dssp TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH-HHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred hhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHH----
Confidence 455679999999999999999999999988888887765531 233444555 78899999999999999988888
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.. .+++++++++|++++.+.++.+.
T Consensus 265 -~~~---------~~~~~~l~~~l~~~~~v~~~~~~ 290 (404)
T 1e5e_A 265 -KAE---------SENAMKVAEYLKSHPAVEKVYYP 290 (404)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHHhCCCeeEEECC
Confidence 777 88999999999999888777663
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-08 Score=99.11 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=80.1
Q ss_pred CccccccccCCcEEEeeecccccCCcceeeeeeeecc-ccc----eeeEEE--------------------------Eee
Q 018198 3 PVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS-ERV----QRHTIS--------------------------VFV 51 (359)
Q Consensus 3 p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~-~~~----~~~~l~--------------------------~~~ 51 (359)
++..+|+++|+|++++|++|+++||++.+||+++.++ ..+ .+ .+. ...
T Consensus 187 g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~-~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~ 265 (421)
T 2ctz_A 187 GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYP-LLTEPQPGYHGLRLTEAFGELAFIVKARVDGL 265 (421)
T ss_dssp GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCH-HHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHH
T ss_pred cccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchh-hhccccchhhhhhhhhhcchhHHHHHHHHHHH
Confidence 4456899999999999999999999999999988742 222 00 000 012
Q ss_pred cCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 52 GDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 52 ~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
..+|..++|+.+|+.++|++++..|+ +++ .+++++++++|++++.|..+.+.
T Consensus 266 ~~~g~~~~~~~a~~~~~~l~~l~~r~-----~~~---------~~~a~~l~~~L~~~p~v~~v~~p 317 (421)
T 2ctz_A 266 RDQGQALGPFEAWVVLLGMETLSLRA-----ERH---------VENTLHLAHWLLEQPQVAWVNYP 317 (421)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHHHHH-----HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred HhcCCCCCHHHHHHHHcCcchHHHHH-----HHH---------HHhHHHHHHHHHhCCCeeEEECC
Confidence 34688999999999999999999899 778 88999999999999999888653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-08 Score=96.91 Aligned_cols=96 Identities=30% Similarity=0.388 Sum_probs=78.2
Q ss_pred ccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCce
Q 018198 6 LRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRA 85 (359)
Q Consensus 6 ~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~ 85 (359)
.+|+++|+|++++|++|+++||++.++|.++++++.+.+ .+.......|+.++++++|+..++++++..|+ +..
T Consensus 187 ~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-----~~~ 260 (393)
T 1n8p_A 187 SNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYE-RLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRV-----RQA 260 (393)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH-----HHH
T ss_pred CCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHhccchHHHHH-----HHH
Confidence 478899999999999999999999999998886444433 23333344688899999999999999988888 777
Q ss_pred EEEEEEECChhHHHHHHHHHhhhhc-eeeeee
Q 018198 86 LFTMVVFGTDRELQQVVKQLQKLVN-VLKVST 116 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~L~k~~~-v~~v~~ 116 (359)
.++++++.++|++++. +.++.+
T Consensus 261 ---------~~~~~~l~~~L~~~~~~l~~v~~ 283 (393)
T 1n8p_A 261 ---------ALSANKIAEFLAADKENVVAVNY 283 (393)
T ss_dssp ---------HHHHHHHHHHHTSCTTTEEEEEC
T ss_pred ---------HHHHHHHHHHHHhCCCCceEEEC
Confidence 7899999999999877 766654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-07 Score=87.61 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=77.8
Q ss_pred ccccccccCCcEEEeeecccccCCcceeeeeeeeccc--------------------------cceeeEEEEee-cCCCC
Q 018198 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE--------------------------RVQRHTISVFV-GDESG 56 (359)
Q Consensus 4 ~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~--------------------------~~~~~~l~~~~-~~~G~ 56 (359)
+.++|+++|+|++++|++|+++|+++.+||+++.+++ .+.+ .++... +..|.
T Consensus 184 ~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~r~~~~~~~g~ 262 (412)
T 2cb1_A 184 ALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPE-RVRTLGLSLCGM 262 (412)
T ss_dssp TSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHH-HHHHHHTTTTCC
T ss_pred ccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHH-HHHHHHHHhcCC
Confidence 4568899999999999999999999999998887743 1111 111122 44677
Q ss_pred ccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 57 ILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 57 ~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.++|+.+|+..++++++.-|+ ++. .++.+++.++|++++.|..+.+.
T Consensus 263 ~~~~~~a~~~~~~l~~l~~~~-----~~~---------~~~~~~l~~~L~~~~~v~~v~~p 309 (412)
T 2cb1_A 263 ALSPFNAYLLFQGLETVALRV-----ARM---------SETARFLAERLQGHPKVKALRYP 309 (412)
T ss_dssp CCCHHHHHHHHHHGGGHHHHH-----HHH---------HHHHHHHHHHHHTCTTCSEEECT
T ss_pred CCChHHhHHHHcCCchHHHHH-----HHH---------HHHHHHHHHHHHcCCCeeEEECC
Confidence 889999999999999987777 666 68899999999998888777653
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-07 Score=86.49 Aligned_cols=100 Identities=25% Similarity=0.359 Sum_probs=80.5
Q ss_pred CccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCC-CCccchhhhhhhhccceeeeeEeeccc
Q 018198 3 PVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE-SGILSRIDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 3 p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~-G~~lsp~~a~l~~RG~~tl~lr~~~~~ 81 (359)
+.+..|+++|+|++++|++|+++|++.-++|.++++++.+.+ .+..+.... |+.++++.++...+.++++..|+
T Consensus 191 ~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 265 (398)
T 2rfv_A 191 PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ-ARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRM---- 265 (398)
T ss_dssp TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH-HHHTHHHHTTCCCCCHHHHHHHHHHHTTHHHHH----
T ss_pred cccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHH-HHHHHHHhCCCCCCCHHHHHHHHhhhhhHHHHH----
Confidence 455578899999999999999999999998888887765431 223344455 78999999999999999887777
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.. .++++.+.++|++++.+.++.+.
T Consensus 266 -~~~---------~~~~~~l~~~l~~~~~v~~~~~~ 291 (398)
T 2rfv_A 266 -ERH---------CENALKIARFLEGHPSITRVYYP 291 (398)
T ss_dssp -HHH---------HHHHHHHHHHHHTCTTEEEEECT
T ss_pred -HHH---------HHHHHHHHHHHHcCCCeeEEECC
Confidence 666 77999999999999888877653
|
| >2hal_A Hepatitis A protease 3C; 3C protease, inhibitor design; HET: BBL; 1.35A {Hepatitis a virus} SCOP: b.47.1.4 PDB: 2h6m_A* 2h9h_A* 2cxv_A* 2a4o_A* 1hav_A 1qa7_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=62.87 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=96.0
Q ss_pred HhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eE--EEEecCCcEEEEE-----E
Q 018198 157 RIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TV--KVSFSDQSTFYAQ-----V 226 (359)
Q Consensus 157 ~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~--~v~~~~g~~~~~~-----v 226 (359)
++...+.+-.|+|.....++.. ....|+..|..+ +.|...|...... .+ .+.. +|+.+... +
T Consensus 4 ~i~~~v~~N~~~i~~~~~~~~~------~~~~t~LgI~~r-~~lvP~H~~~~~~~~~~~~~~i~i-~g~~~~~~~~~v~~ 75 (212)
T 2hal_A 4 EIAGLVRKNLVQFGVGEKNGSV------RWVMNALGVKDD-WLLVPSHAYKFEKDYEMMEFYFNR-GGTYYSISAGNVVI 75 (212)
T ss_dssp HHHHHHHHHEEEEEEEETTSCC------EEEEEEEEEEBT-EEEEEGGGTTTSTTGGGEEEEEEE-TTEEEEEEGGGSEE
T ss_pred eehhhhhccEEEEEEeCCCCCc------ceEEEEEEEcCC-EEEEecccCcccccccccceEEEE-CCEEEeecccccee
Confidence 4455666777888886533221 236899999976 9999999975322 22 3333 55555443 2
Q ss_pred EEEc-CCCCEEEEEEcCCCCCccceE--ecCC-CCCCCCC-EEEEEecCCCCCCceeEe------EEeeeecccCCcccc
Q 018198 227 VGHD-QVNDLAVLHIDAPNHELRPIH--VSVS-ADLRVGK-KIYAIGHPLGWSFTCTTG------VISALDREIPGRLIQ 295 (359)
Q Consensus 227 ~~~d-~~~DlAll~v~~~~~~~~~~~--l~~~-~~~~~G~-~v~~iG~p~~~~~~~~~G------~vs~~~~~~~~~~~~ 295 (359)
...| ...||++++++..+ .++.+. +.+. +....++ .+.+++...+.+..+..+ .++...-...+....
T Consensus 76 ~~~d~~~~Dl~lv~Lp~~~-~FrDIrk~f~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 154 (212)
T 2hal_A 76 QSLDVGFQDVVLMKVPTIP-KFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVD 154 (212)
T ss_dssp ECSSSSCCSEEEEECTTSC-CBCCCGGGBCCGGGGGGTTTSCEEEEEEETTEEEEEEECSCEEEEEEEEEEECTTSCEEE
T ss_pred EeccCCCceEEEEECCCCC-ccCChhHhcCCcccccccccceEEEEeccCCCceEEecccccccceeeEEEecCCCcccc
Confidence 2233 46899999997633 222221 1111 1112222 233332111111111111 111111112232233
Q ss_pred ----cEEEEcccCCCCCccceeecC----CCeEEEEEeeecCCCcceeEEEEehH
Q 018198 296 ----GVIQIDASVNLGNSGGPLLDS----SGSLIGVNTFITSGAFSGIGFALPID 342 (359)
Q Consensus 296 ----~~i~~~~~~~~G~SGgPl~~~----~G~viGi~~~~~~~~~~~~~~aip~~ 342 (359)
..+..++++.+|+-||||+.. .|+++|||+++. .+.+||.|+.
T Consensus 155 ~~~~~~~~Y~~pT~~G~CGs~li~~~~~~~~kIiGiHvaG~----g~~G~a~~lt 205 (212)
T 2hal_A 155 LTVDQAWRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGG----NSILVAKLVT 205 (212)
T ss_dssp EEEEEEEEEECCCCTTCTTCEEEESCGGGTTCEEEEEEEEE----TTEEEEEECC
T ss_pred cccceEEEEecCCCCCcCCCeEEEccCCCCceEEEEEeCcC----CCcEEEEeec
Confidence 568889999999999999974 799999999984 2367888753
|
| >3zve_A 3C protease; hydrolase, michael inhibitor; HET: G84; 1.80A {Human enterovirus} PDB: 3zv8_A* 3zva_A* 3zvb_A* 3zv9_A* 3zvd_A* 3zvc_A* 3zvf_A* 3zvg_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0008 Score=57.09 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=82.9
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE--EEEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCCC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ--VVGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADLR 259 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~--v~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~~ 259 (359)
.-||..|-++ ++|.+.|...+ ..+.+ +|+.+... ....+. ..||++++++.... ++-+. +.+ ....
T Consensus 24 ~ft~LgI~dr-~~lvP~Ha~~~-~ti~i---~g~~~~v~d~~~l~~~~~~~~Dlt~v~l~~~~k-FRDIr~~~~~-~~~~ 96 (190)
T 3zve_A 24 EFTMLGVHDR-VAVIPTHASVG-ETIYI---NDVETKVLDACALRDLTDTNLEITIVKLDRNQK-FRDIRHFLPR-YEDD 96 (190)
T ss_dssp EEEEEEEEBT-EEEEEGGGCCC-SEEEE---TTEEEEEEEEEEEECTTCCEEEEEEEEECCSSC-BCCCGGGSCS-SCCC
T ss_pred EEEEEEEeCC-EEEEecCCCCC-cEEEE---CCEEEEeeEEEEEEcCCCCeEEEEEEEcCCCcc-cCchHHhccc-cCCC
Confidence 4678888866 99999997643 23332 34333221 111232 34999999987542 33221 222 1222
Q ss_pred CCCEEEEEecCCCCCCceeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEE
Q 018198 260 VGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFA 338 (359)
Q Consensus 260 ~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~a 338 (359)
..+.+.++-.+......+..|.+...... ..+......+.+++++.+|+-||||+ .+|+++||++++. ...+|+
T Consensus 97 ~~~~~l~i~s~~~~~~~~~v~~v~~~~~i~l~g~~~~~~~~Y~~pT~~G~CG~~li-~~gkI~GiHvaG~----G~~g~~ 171 (190)
T 3zve_A 97 YNDAVLSVHTSKFPNMYIPVGQVTNYGFLNLGGTPTHRILMYNFPTRAGQCGGVVT-TTGKVIGIHVGGN----GAQGFA 171 (190)
T ss_dssp EEEEEEEECSSSCSSEEEEEEEEEEEEEEEETTEEEEEEEEESSCCCTTCTTCEEE-ETTEEEEEEEEEC----SSCEEE
T ss_pred CCCeEEEEECCCCcceEEecccceEeceeecCCCeeeeeEEEecCCCCCccCCeEE-ECCCEEEEEECcC----CCceEe
Confidence 33344444333222222333444433321 12445567788999999999999999 5799999999983 235777
Q ss_pred Eeh
Q 018198 339 LPI 341 (359)
Q Consensus 339 ip~ 341 (359)
.++
T Consensus 172 ~~l 174 (190)
T 3zve_A 172 AML 174 (190)
T ss_dssp EEC
T ss_pred hhh
Confidence 664
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=1.8e-06 Score=79.91 Aligned_cols=97 Identities=30% Similarity=0.393 Sum_probs=75.1
Q ss_pred cccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecC-CCCccchhhhhhhhccceeeeeEeecccCC
Q 018198 5 VLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGD-ESGILSRIDGVFTRRNCNIESLGVIGLNKD 83 (359)
Q Consensus 5 ~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~-~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~ 83 (359)
+..|+++|+|+++.|++|+++|++.-++|.++++++.+.+ .+...... .|+..+++.+|...++++.+..|+ +
T Consensus 128 ~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 201 (331)
T 1pff_A 128 LTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAK-VKSQGIKDITGAIISPHDAWLITRGTLTLDMRV-----K 201 (331)
T ss_dssp HCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHH-HHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-----H
T ss_pred cCChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHH-HHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHH-----H
Confidence 3467789999999999999999998878888887633322 23334444 577899999999999998877777 6
Q ss_pred ceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 84 RALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
.. .++++++.++|++++++.++.+
T Consensus 202 ~~---------~~~~~~~~~~l~~~~~l~~~~~ 225 (331)
T 1pff_A 202 RA---------AENAQKVAEFLHEHKAVKKVYY 225 (331)
T ss_dssp HH---------HHHHHHHHHHHHHCTTCCCEEC
T ss_pred HH---------HHHHHHHHHHHHcCCCeeEEEC
Confidence 66 7789999999999877665544
|
| >3qzr_A 3C protein; chymotrypsin-fold, beta-ribbon, hydrolysis, nucleus, hydrola hydrolase inhibitor complex; HET: AG7; 1.04A {Human enterovirus 71} SCOP: b.47.1.0 PDB: 3osy_A 3qzq_A* 3r0f_A* 3sjo_A* 3sjk_A 3sji_A* 3sj8_A* 3sj9_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0028 Score=53.36 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=93.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEE-E-Ec---CCCCEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVV-G-HD---QVNDLA 236 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~-~-~d---~~~DlA 236 (359)
+++.++.|++.. +.=||+.|-++ ..|-..|...+ +.+.+ +|+.++..-. . .+ ...||+
T Consensus 15 ~~~N~~~vtt~~------------g~ft~LgI~dr-~~vvP~Ha~~~-~~i~i---~g~~~~v~d~~~L~~~~g~~~Elt 77 (187)
T 3qzr_A 15 LRRNVRQVQTDQ------------GHFTMLGVRDR-LAVLPRHSQPG-KTIWI---EHKLVNVLDAVELVDEQGVNLALT 77 (187)
T ss_dssp HHHHEEEEEETT------------EEEEEEEEEBT-EEEEEGGGCCC-SEEEE---TTEEEEEEEEEECCCTTCCCCSEE
T ss_pred HHcCeEEEEECC------------CeEEEEEEeee-EEEEeCCCCCC-CEEEE---CCEEEEeeeeEEEECCCCCEEEEE
Confidence 345677777632 23588888765 89999998433 44333 5666554211 1 12 246999
Q ss_pred EEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCc-eeEeEEeeeec-ccCCcccccEEEEcccCCCCCccceee
Q 018198 237 VLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFT-CTTGVISALDR-EIPGRLIQGVIQIDASVNLGNSGGPLL 314 (359)
Q Consensus 237 ll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~-~~~G~vs~~~~-~~~~~~~~~~i~~~~~~~~G~SGgPl~ 314 (359)
+++++...+ ++-+.---.+....-..+.++-.....+.. +..|.+..... ...+......+.++.++.+|+-||+|+
T Consensus 78 ~v~l~~~~k-fRDIrkfi~~~~~~~~~~~L~~ns~~~~~~~~~vG~v~~~g~inlsg~~t~r~l~Y~~pTk~G~CGgvl~ 156 (187)
T 3qzr_A 78 LITLDTNEK-FRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVT 156 (187)
T ss_dssp EEEECSSCC-BCCCGGGSCSSCCCEEEEEEEECCSSSCSEEEEEEEEEEEEEEEETTEEEEEEEEESSCCCTTCTTCEEE
T ss_pred EEEcCCCcc-ccchHHhCccCcCCCCceEEEEEcCCCcceEEEeccEEEeceEeCCCCccccEEEECCCCCCCccCCeEE
Confidence 999987543 332221011222222244555444433333 34466555422 223445567899999999999999999
Q ss_pred cCCCeEEEEEeeecCCCcceeEEEEeh
Q 018198 315 DSSGSLIGVNTFITSGAFSGIGFALPI 341 (359)
Q Consensus 315 ~~~G~viGi~~~~~~~~~~~~~~aip~ 341 (359)
. .|+++||++++. ...+|+.++
T Consensus 157 ~-~gkIiGIHvaGn----G~~G~~a~L 178 (187)
T 3qzr_A 157 S-VGKIIGIHIGGN----GRQGFCAGL 178 (187)
T ss_dssp E-TTEEEEEEEEEC----SSCEEEEEC
T ss_pred e-cCcEEEEEECCC----CCcEEEEEe
Confidence 5 899999999972 245676664
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.8e-06 Score=80.61 Aligned_cols=98 Identities=26% Similarity=0.318 Sum_probs=76.3
Q ss_pred ccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCC
Q 018198 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKD 83 (359)
Q Consensus 4 ~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~ 83 (359)
....|+++|+|+++.|++|+++|++..++|.++++++.+.+ .+.......++..+++.+|...++++.+..|+ +
T Consensus 180 ~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 253 (386)
T 1cs1_A 180 ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT-ELAWWANNIGVTGGAFDSYLLLRGLRTLVPRM-----E 253 (386)
T ss_dssp TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHH-----H
T ss_pred ccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHH-HHHHHHHhcCCCCCHHHHHHHHhcccHHHHHH-----H
Confidence 34467889999999999999999999988888887644332 22233344567889999999999988776666 6
Q ss_pred ceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 84 RALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
.. .++.+++.++|++++.+.++.+
T Consensus 254 ~~---------~~~~~~l~~~l~~~~~l~~~~~ 277 (386)
T 1cs1_A 254 LA---------QRNAQAIVKYLQTQPLVKKLYH 277 (386)
T ss_dssp HH---------HHHHHHHHHHHTTCTTEEEEEC
T ss_pred HH---------HHHHHHHHHHHhcCCCeEEEEC
Confidence 66 7789999999999888776654
|
| >3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0022 Score=53.95 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=93.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEE--EEEcC---CCCEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQV--VGHDQ---VNDLA 236 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v--~~~d~---~~DlA 236 (359)
+++.++.|++.. +.-||.-|-++ ..|-..|.-. .+.+.| +|+.++..- .-.+. ..||+
T Consensus 13 ~k~N~~~vtT~~------------G~ft~LgI~dr-~~vvPtHa~~-~~~i~i---~G~~~~v~d~~~L~~~~g~~lElt 75 (191)
T 3q3y_A 13 MKRNASTVKTEY------------GEFTMLGIYDR-WAVLPRHAKP-GPTILM---NDQEVGVLDAKELVDKDGTNLELT 75 (191)
T ss_dssp HHHHEEEEEETT------------EEEEEEEEEBT-EEEEEGGGCC-CSEEEE---TTEEEEEEEEEEEECTTCCEEEEE
T ss_pred HHcCeEEEEECC------------CcEEEEEEece-EEEEECCCCC-CCEEEE---CCEEEEeeeEEEEEcCCCCEEEEE
Confidence 345677777632 23578888755 8999999833 333333 566665411 11232 34999
Q ss_pred EEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCc-eeEeEEeeeec-ccCCcccccEEEEcccCCCCCccceee
Q 018198 237 VLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFT-CTTGVISALDR-EIPGRLIQGVIQIDASVNLGNSGGPLL 314 (359)
Q Consensus 237 ll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~-~~~G~vs~~~~-~~~~~~~~~~i~~~~~~~~G~SGgPl~ 314 (359)
+++++...+ ++-+.---.+.........++-.-...+.. +..|.+..... ...+.....++.+++++..|.-||+|+
T Consensus 76 ~v~l~~~~k-FRDIrkfi~~~~~~~~~~~Lv~ns~~~p~~~~~vG~v~~~g~inlsg~~t~r~l~Y~~pTk~G~CGgvL~ 154 (191)
T 3q3y_A 76 LLKLNRNEK-FRDIRGFLAREEVEVNEAVLAINTSKFPNMYIPVGQVTDYGFLNLGGTPTKRMLVYNFPTRAGQCGGVLM 154 (191)
T ss_dssp EEEEECSSC-BCCCGGGBCSSCCCEEEEEEEECSSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEESCCCTTCTTCEEE
T ss_pred EEECCCCcc-ccchHHhcccccccCCceEEEEEcCCCcceEEEeccEEEcceEeCCCCcccCEEEecCCCCCCccCCEEE
Confidence 999987553 332221012222333334444444333333 34466655322 223445567899999999999999999
Q ss_pred cCCCeEEEEEeeecCCCcceeEEEEeh
Q 018198 315 DSSGSLIGVNTFITSGAFSGIGFALPI 341 (359)
Q Consensus 315 ~~~G~viGi~~~~~~~~~~~~~~aip~ 341 (359)
. .|+++||++++. ...+|+.++
T Consensus 155 ~-~gkIiGIHvgGn----G~~Gfaa~L 176 (191)
T 3q3y_A 155 S-TGKVLGIHVGGN----GHQGFSAAL 176 (191)
T ss_dssp E-TTEEEEEEEEEE----TTEEEEEEC
T ss_pred e-CCCEEEEEECCC----CcceEEeeh
Confidence 5 799999999872 345676654
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-06 Score=83.17 Aligned_cols=89 Identities=12% Similarity=-0.079 Sum_probs=69.6
Q ss_pred ccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEE--eecCCCCccch--hhhhhhhccceeeeeEeeccc
Q 018198 6 LRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISV--FVGDESGILSR--IDGVFTRRNCNIESLGVIGLN 81 (359)
Q Consensus 6 ~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~--~~~~~G~~lsp--~~a~l~~RG~~tl~lr~~~~~ 81 (359)
.+|+++|+|+++.|++|+++||.+..||.++++.+.+.+ +.. .....|...++ ..+++.++|++++..|+
T Consensus 217 ~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~--l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~---- 290 (431)
T 3ht4_A 217 QEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEA--CAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVA---- 290 (431)
T ss_dssp CCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHH--HHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHH----
T ss_pred CCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHH--HHHHhccCCcccccCccHHHHHHHHhHhhhHHHHH----
Confidence 689999999999999999999999999999887654322 222 22234444444 34788999999998888
Q ss_pred CCceEEEEEEECChhHHHHHHHHHhhhhc
Q 018198 82 KDRALFTMVVFGTDRELQQVVKQLQKLVN 110 (359)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~L~k~~~ 110 (359)
++. .+++..++++|+++.-
T Consensus 291 -~~~---------~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 291 -GQA---------LKGAIFTAAFLEKLGM 309 (431)
T ss_dssp -HHH---------HHHHHHHHHHHHHHTC
T ss_pred -HHH---------HHHHHHHHHHHHhCcC
Confidence 778 8899999999999864
|
| >4dcd_A Protease 3C, genome polyprotein; antiviral inhibitors, dipeptidyl inhib hydrolase-hydrolase inhibitor complex; HET: K36; 1.69A {Human poliovirus 1} PDB: 1l1n_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0013 Score=55.44 Aligned_cols=143 Identities=14% Similarity=0.202 Sum_probs=84.7
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEE--EEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCC
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQV--VGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADL 258 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v--~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~ 258 (359)
+.-||.-|-++ +.|-..|... .+++.| +|..++..- ...+. ..||++++++..++ ++-+. +. +..
T Consensus 30 G~ft~LgI~d~-~~viP~Ha~p-~~~i~i---~G~~~~v~d~~~l~~~~gv~lElt~V~l~r~~k-FRDIr~fi~--~~~ 101 (190)
T 4dcd_A 30 GEFTMLGVHDN-VAILPTHASP-GESIVI---DGKEVEILDAKALEDQAGTNLEITIITLKRNEK-FRDIRPHIP--TQI 101 (190)
T ss_dssp EEEEEEEEEBT-EEEEEGGGCC-CSEEEE---TTEEEEEEEEEEEECTTCCEEEEEEEEESSSCC-BCCCGGGSC--SSC
T ss_pred eEEEEEEEECc-EEEEeCCCCC-CcEEEE---CCEEEEeeEEEEEecCCCCeEEEEEEEcCCCcc-ccchhHhcc--ccC
Confidence 35688888866 9999999643 234443 355544321 12232 35999999998643 33322 21 122
Q ss_pred CCCCEEEEEecCCCCCCc-eeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeE
Q 018198 259 RVGKKIYAIGHPLGWSFT-CTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIG 336 (359)
Q Consensus 259 ~~G~~v~~iG~p~~~~~~-~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~ 336 (359)
....+++.+=+-...+.. +..|.+...... ..+......+.++++..+|+-||||+ .+|+++||++++. ...+
T Consensus 102 ~~~~~~~L~vn~~~~~~~~~~vg~v~~~g~i~lsg~~t~r~l~Y~~pT~~G~CGg~l~-~~gkIlGIHvaG~----G~~G 176 (190)
T 4dcd_A 102 TETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVIT-CTGKVIGMHVGGN----GSHG 176 (190)
T ss_dssp CCEEEEEEEECSSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEESSCCCTTCTTCEEE-ETTEEEEEEEEEC----SSCE
T ss_pred CCCCceEEEEecCCCccEEEEeeeeEEeccccCCCCcccceEEEccCCCCCccCCEEE-eCCCEEEEEECCC----CCce
Confidence 233444443333233333 233444433321 22445567889999999999999999 5799999999983 2456
Q ss_pred EEEeh
Q 018198 337 FALPI 341 (359)
Q Consensus 337 ~aip~ 341 (359)
|+.++
T Consensus 177 ~aa~L 181 (190)
T 4dcd_A 177 FAAAL 181 (190)
T ss_dssp EEEEC
T ss_pred Eeeeh
Confidence 76654
|
| >2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0014 Score=55.15 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=83.3
Q ss_pred EEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEE--EEEEEcC---CCCEEEEEEcCCCCCccce--EecCCCCCCC
Q 018198 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA--QVVGHDQ---VNDLAVLHIDAPNHELRPI--HVSVSADLRV 260 (359)
Q Consensus 188 GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~--~v~~~d~---~~DlAll~v~~~~~~~~~~--~l~~~~~~~~ 260 (359)
-||..|.++ +.|...|...+. .+ .+ +|+.+.. ...-.|. ..||++++++...+ ++-+ -+.+... ..
T Consensus 25 ~t~LgI~d~-~~vvP~Ha~~~~-~i--~i-~g~~~~v~d~~~l~~~~~~~~eltlv~l~~~~k-fRDIrkfi~~~~~-~~ 97 (182)
T 2b0f_A 25 FTGLGIHDR-VCVIPTHAQPGD-DV--LV-NGQKIRVKDKYKLVDPENINLELTVLTLDRNEK-FRDIRGFISEDLE-GV 97 (182)
T ss_dssp EEEEEEEBT-EEEEESTTCCCS-EE--EE-TTEEEEEEEEEEEEETTTEEEEEEEEEECCSSC-BCCGGGTBCSSCC-CS
T ss_pred EEEEEEeee-EEEEecCCCCcc-EE--EE-CCEEEEeeeeeEEEcCCCCeeEEEEEECCCccc-ccchHHhcCCCCC-CC
Confidence 478888866 999999997653 33 32 4554322 1112232 57999999987553 2221 1222222 12
Q ss_pred CCEEEEEecCCCCCC-ceeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEE
Q 018198 261 GKKIYAIGHPLGWSF-TCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFA 338 (359)
Q Consensus 261 G~~v~~iG~p~~~~~-~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~a 338 (359)
+.+.++ +-...+. .+..|.+...... ..+......+..++++.+|+-||||+. +|+++|||+++. ...+|+
T Consensus 98 -~~~lv~-n~~~~p~~~~~vg~~~~~g~i~l~G~~t~~~~~Y~~pTk~G~CGgvl~~-~gkIlGIHvaG~----G~~Gfa 170 (182)
T 2b0f_A 98 -DATLVV-HSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCA-TGKIFGIHVGGN----GRQGFS 170 (182)
T ss_dssp -EEEEEE-ESSSCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESCCCTTCTTCEEEE-TTEEEEEEEEEE----TTEEEE
T ss_pred -ceEEEE-EcCCCceEEEEecceEEeceEcCCCcEecceEEeccCCCCcccCCeEEe-CCCEEEEEeCCC----CCceEe
Confidence 334444 3222222 2245554442211 224445678889999999999999994 889999999972 346777
Q ss_pred Eeh
Q 018198 339 LPI 341 (359)
Q Consensus 339 ip~ 341 (359)
.++
T Consensus 171 a~l 173 (182)
T 2b0f_A 171 AQL 173 (182)
T ss_dssp EEC
T ss_pred hhh
Confidence 664
|
| >1cqq_A Type 2 rhinovirus 3C protease; viral protein, hydrolase; HET: AG7; 1.85A {Human rhinovirus 2} SCOP: b.47.1.4 PDB: 2xya_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0053 Score=51.60 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=83.8
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE--EEEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCCC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ--VVGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADLR 259 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~--v~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~~ 259 (359)
.-|+.-|..+ +.|-..|...+. .+.+ +|+.+... ...+|+ ..||++++++..++ ++-+. +.+ ...
T Consensus 24 ~~t~Lgi~~~-~~lvP~Ha~~~~-~i~i---~g~~v~i~d~~~l~d~~g~~~El~lv~l~~~~k-frDi~kfip~--~~~ 95 (180)
T 1cqq_A 24 KFTGLGVYDR-FVVVPTHADPGK-EIQV---DGITTKVIDSYDLYNKNGIKLEITVLKLDRNEK-FRDIRRYIPN--NED 95 (180)
T ss_dssp EEEEEEEEBT-EEEEEGGGCCCS-EEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEECSSCC-BCCGGGGSCS--SCC
T ss_pred cEEEEEEeeE-EEEEccCcCccc-EEEE---CCEEEEeccceEEEcCCCCeEEEEEEEcCCccc-cCccHhhcCC--CcC
Confidence 3677888866 999999998874 3322 45444332 223342 35999999987543 33222 221 111
Q ss_pred CCCEEEEEecCCCCCC-ceeEeEEeeeecc-cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEE
Q 018198 260 VGKKIYAIGHPLGWSF-TCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGF 337 (359)
Q Consensus 260 ~G~~v~~iG~p~~~~~-~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~ 337 (359)
.....+.+-+-...+. -+..|.+...... ..+......+..++++.+|+-||+|+ .+|+++|||+++ . ...+|
T Consensus 96 ~~~~~~l~~n~~~~~~~~v~~g~~~~~g~i~~~g~~~~r~l~Y~~pT~~G~CGsvl~-~~gkIiGIHvAG-~---G~~G~ 170 (180)
T 1cqq_A 96 DYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYCGGVLY-KIGQVLGIHVGG-N---GRDGF 170 (180)
T ss_dssp CEEEEEEEECTTSSSCEEEEEEEEEECCCEEETTEEECSEEEECCCCCTTCTTCEEE-ETTEEEEEEEEE-C---SSCEE
T ss_pred CCCceEEEEEcCCCceEEEEccceeeeeeEecCCcEeccEEEecCCCCCCcCCCeEE-ECCCEEEEEECC-C---CCcEE
Confidence 1122333333222233 2444544432211 12444557899999999999999999 568999999998 2 34677
Q ss_pred EEeh
Q 018198 338 ALPI 341 (359)
Q Consensus 338 aip~ 341 (359)
+.++
T Consensus 171 aa~l 174 (180)
T 1cqq_A 171 SAML 174 (180)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 7664
|
| >2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like cysteine protease, capsid protein, core protein; 1.9A {Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB: 2j92_A 2wv4_A 2wv5_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00033 Score=60.61 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=83.9
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEE---EEEE----EEcCC---CCEEEEEEcCCCCCccceE--ecC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFY---AQVV----GHDQV---NDLAVLHIDAPNHELRPIH--VSV 254 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~---~~v~----~~d~~---~DlAll~v~~~~~~~~~~~--l~~ 254 (359)
.-+|..|-.+ +.|...|...+... .+.+ +++.+. ..+. ..+.+ .||++++++.... ++-+. +.+
T Consensus 31 ~~~~LgI~~r-~~l~P~H~~~~~~~-~i~i-~g~~~~~~~~~~~~~e~~v~~~~~~~Dl~~~~l~~~~k-frdi~k~f~~ 106 (209)
T 2bhg_A 31 ICCATGVFGT-AYLVPRHLFAEKYD-KIML-DGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLHRGNK-VRDITKHFRD 106 (209)
T ss_dssp EEEEEEEEBT-EEEEEHHHHTSCCS-EEEE-TTEEECGGGEEEECCEECCSSSCEECSEEEEEESSSCC-BCCCGGGBCS
T ss_pred EEEEeeEcCC-EEEEEcccCCCCCc-EEEE-cCEEEEeeeeEEeeceeeecCCCCceeEEEEECCCCcc-cCchhhhccc
Confidence 3566778766 89999999866321 3333 233332 1222 23333 7999999976432 22221 222
Q ss_pred CCCCCCCCEEEEEecCCCCCCceeEeEEeeeeccc---CCcccccEEEEcccCCCCCccceeecC---CCeEEEEEeeec
Q 018198 255 SADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI---PGRLIQGVIQIDASVNLGNSGGPLLDS---SGSLIGVNTFIT 328 (359)
Q Consensus 255 ~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~---~~~~~~~~i~~~~~~~~G~SGgPl~~~---~G~viGi~~~~~ 328 (359)
......++++..+-++......+..|.+....... .+......+.+++++.+|+-||+|+-. .|+++|||+++.
T Consensus 107 ~~~~~~~~~~~~~~n~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~Y~~pT~~G~CGs~lv~~~~~~~kIvGIHvaG~ 186 (209)
T 2bhg_A 107 TARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSAGG 186 (209)
T ss_dssp SCEECTTCEEEEEEEETTTEEEEEEEEESSCEECCC-----CCTTEEEEECCCCTTCTTCEEEEEETTEEEEEEEEEEEE
T ss_pred ccccCCCCeEEEEeccCccCceeeeeeEEEccceeeecCCCccccEEEEcCCCCCCcCCCEEEEecCCCceEEEEEEccC
Confidence 11113455577666655332333355444333322 233456789999999999999999643 689999999983
Q ss_pred CCCcceeEEEEe
Q 018198 329 SGAFSGIGFALP 340 (359)
Q Consensus 329 ~~~~~~~~~aip 340 (359)
.+.+|+.+
T Consensus 187 ----g~~G~aa~ 194 (209)
T 2bhg_A 187 ----NGVGYCSC 194 (209)
T ss_dssp ----TTEEEEEE
T ss_pred ----CCceEEEE
Confidence 23455544
|
| >2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00095 Score=48.17 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=27.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS 210 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~ 210 (359)
..|..|.|... . ...|.|.+|+++ ||||+|||+.+..
T Consensus 11 ~~Pw~v~l~~~----~-------~~~CgGslIs~~-~VLTAAHC~~~~~ 47 (80)
T 2pka_A 11 SHPWQVAIYHY----S-------SFQCGGVLVNPK-WVLTAAHCKNDNY 47 (80)
T ss_dssp SCTTEEEEEET----T-------EEEEEEEEEETT-EEEECGGGCCSCC
T ss_pred CCCcEEEEEEC----C-------ceEEEEEEEcCC-EEEECHHHCCCCc
Confidence 34677777532 1 236999999987 9999999997643
|
| >2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4 e.8.1.4 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.033 Score=56.27 Aligned_cols=142 Identities=14% Similarity=0.191 Sum_probs=80.8
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE--EEEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCCC
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ--VVGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADLR 259 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~--v~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~~ 259 (359)
.-+|..|..+ .+|...|...+. .+.+ +|..+... ...++. ..||+++++..... ++.+. +.+.. .
T Consensus 24 ~~~~l~i~~~-~~l~p~H~~~~~-~~~i---~g~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~-frdi~~~~~~~~--~ 95 (644)
T 2ijd_1 24 EFTMLGVHDN-VAILPTHASPGE-SIVI---DGKEVAILAAKALADQAGTNLEITIITLKRNEK-FRDIRPHIPTQI--T 95 (644)
T ss_dssp EEEEEEEEBT-EEEEEGGGCCCS-EEEE---TTEEEEEEECCEEECTTSCEEEEEEEEECSSCC-BCCCGGGSCSSC--C
T ss_pred EEEEEEEece-EEEEccccCCCc-eEEE---CCEEEEeccceeEEcCCCCceeEEEEECCCCCC-cCChHHhccCCc--c
Confidence 3567778766 999999988653 3322 23333211 112344 35999999975432 33222 21111 1
Q ss_pred CCCEEEEEecCCCCCC-ceeEeEEeeeec-ccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEE
Q 018198 260 VGKKIYAIGHPLGWSF-TCTTGVISALDR-EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGF 337 (359)
Q Consensus 260 ~G~~v~~iG~p~~~~~-~~~~G~vs~~~~-~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~ 337 (359)
......++-.-.+... .+..|.+..... ...+......+..+.++.+|+-|+||+. +|+|||||+++. ...+|
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~y~~~T~~G~CG~~l~~-~gkIvGiHvaG~----g~~g~ 170 (644)
T 2ijd_1 96 ETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQAGGVITC-TGKVIGMHVGGN----GSHGF 170 (644)
T ss_dssp CEEEEEEEECSSSSTTEEEEEEEEEEEEEECCTTSCEEEEEEECSCCCTTCTTCEEEE-TTEEEEEEEEEC----SSCEE
T ss_pred CCCceEEEEcCCCCceEEEEeeeeeeccceecCCCccccEEEEcCCCCCCCCCchhhh-CCcEEEEEEcCC----CCceE
Confidence 2222333222222222 234555554322 1224445577889999999999999995 799999999983 23466
Q ss_pred EEeh
Q 018198 338 ALPI 341 (359)
Q Consensus 338 aip~ 341 (359)
+.++
T Consensus 171 a~~l 174 (644)
T 2ijd_1 171 AAAL 174 (644)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6664
|
| >1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0045 Score=46.39 Aligned_cols=51 Identities=29% Similarity=0.471 Sum_probs=36.7
Q ss_pred cCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 303 SVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 303 ~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..|.|||||||+-. +| .++||++++.... ...-+...-+...++|+++.++
T Consensus 41 ~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~c~~~~~p~vyt~V~~y~~WI~~~~~ 95 (97)
T 1yph_E 41 SSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95 (97)
T ss_dssp BCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEEHHHHHHHHHHHHH
T ss_pred CCCcCCCCCcEEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHhHHHHHHHHc
Confidence 57889999999843 22 7999999986322 1234566778888888887654
|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.018 Score=41.74 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=59.3
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEE-CChhHHHHHHHHHhhhhceeeeeec
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF-GTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~-~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.+.....+..|.++.+...|...|+|+.+++...... ...+++.+. .+.+..+++.++|+++++|..|...
T Consensus 7 ~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~ 78 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERL 78 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEe
Confidence 5667788999999999999999999999999944333 556777665 4568889999999999999998775
|
| >4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.044 Score=43.65 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=79.6
Q ss_pred ceEEEEEEeCCCEEEeccccc-CCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCC-CccceEecCCCCCCCCCE
Q 018198 186 GSGAGFLWDQDGHIVTNYHVI-CGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH-ELRPIHVSVSADLRVGKK 263 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv-~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~-~~~~~~l~~~~~~~~G~~ 263 (359)
+.|-||.|++. ..+|+-||+ .+.+++. | .+...+..+..-+++.+++..+.. ++.-..|... ...|+-
T Consensus 15 gsgwgfwVS~~-~fiTaTHV~p~~~~eif-----G--~p~~~i~v~~~GEf~~~rfp~~~rpdvsgmiLEeg--~peGtV 84 (185)
T 4ash_A 15 GTGWGFWVSGH-VFITAKHVAPPKGTEIF-----G--RKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENG--CQEGVV 84 (185)
T ss_dssp TTEEEEESSSS-EEEEEGGGSCCTTCCBT-----T--BCTTSEEEEEETTEEEEEESSCSCTTSCCCEECSS--CCTTCE
T ss_pred cCceEEEEccc-EEEEEEeecCCCchhhc-----C--CccceEEEeecCcEEEEEcCCCcCCCCcceEEecC--CCCCcE
Confidence 47999999987 999999999 4443321 1 011123345567889999976542 4566666432 344776
Q ss_pred EEEE-ecCCCC--CCceeEeEEeeeecccCCcc---cccEEE-------EcccCCCCCccceeecCC---CeEEEEEeee
Q 018198 264 IYAI-GHPLGW--SFTCTTGVISALDREIPGRL---IQGVIQ-------IDASVNLGNSGGPLLDSS---GSLIGVNTFI 327 (359)
Q Consensus 264 v~~i-G~p~~~--~~~~~~G~vs~~~~~~~~~~---~~~~i~-------~~~~~~~G~SGgPl~~~~---G~viGi~~~~ 327 (359)
+.++ -.+.+. +..++.|.+...+- .+.. ...++. .|-...|||-|.|-+-.. -.|+|++.+.
T Consensus 85 ~svlikR~sgeliPlavRmgt~as~kI--qGk~v~gqtGmlltganaK~mdLGT~PGDCGcPYvykrgn~~vv~GVHtAa 162 (185)
T 4ash_A 85 ASVLVKRASGEMLALAVRMGSQAAIKI--GSAVVHGQTGMLLTGSNAKAQDLGTIPGDAGCPYVYKKGNTWVVIGVHVAA 162 (185)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEEEEE--TTEEEEEEEEEECC-------CCSCCTTCTTCEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEecCCCCcceeEEEecceeeeEE--eeeEecceeeeEEecCCcccCcCCCCCCCCCCceEEeeCCceEEEEEEEee
Confidence 6553 333332 22344454444321 1110 011222 244577999999998543 3699999998
Q ss_pred cCCCcc
Q 018198 328 TSGAFS 333 (359)
Q Consensus 328 ~~~~~~ 333 (359)
..+++.
T Consensus 163 tr~gNt 168 (185)
T 4ash_A 163 TRSGNT 168 (185)
T ss_dssp CSSSSE
T ss_pred ccCCCE
Confidence 866643
|
| >1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.046 Score=57.20 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=51.0
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCeEEEEecCC-cEEEEEEEEE-cCCCCEEEEEEcCCCCCccceEecCCC-------
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-STFYAQVVGH-DQVNDLAVLHIDAPNHELRPIHVSVSA------- 256 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g-~~~~~~v~~~-d~~~DlAll~v~~~~~~~~~~~l~~~~------- 256 (359)
..|.+.+|++. ||+|.+|.... . .|.|.++ ..|.. +.+. .+..|+++.|+.....++.|+.+....
T Consensus 56 ~~G~aTLI~pq-YiVSvaHn~gy-~--~v~fG~~~n~Y~i-V~rnn~~~~Dy~~pRL~K~VTEvaP~~~t~~g~~~~~y~ 130 (1048)
T 1wxr_A 56 EIGVATLINPQ-YIASVKHNGGY-T--NVSFGDGENRYNI-VDRNNAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYL 130 (1048)
T ss_dssp TTCCCEEEETT-EEEBCTTCCSC-C--EECCTTSCCCEEE-EECCBCSSSSCBCCEESSCCCSSCCCCBCSSCSCTTGGG
T ss_pred CCceEEEEcCc-EEEEeeecCCC-c--eEEeCCCcceEEE-EeeCCCCCCCeeeeecccccccccceeeccccCcccccc
Confidence 45888899987 99999996443 3 4566554 35544 2222 234599999999876666666654321
Q ss_pred CCCCCCEEEEEecC
Q 018198 257 DLRVGKKIYAIGHP 270 (359)
Q Consensus 257 ~~~~G~~v~~iG~p 270 (359)
..+.....+.+|..
T Consensus 131 d~ery~~f~RvGsG 144 (1048)
T 1wxr_A 131 DKERYPVFYRLGSG 144 (1048)
T ss_dssp CTTTCCCEEEEECS
T ss_pred ccccCceEEEECCc
Confidence 13445566777754
|
| >2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.13 Score=41.18 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=78.5
Q ss_pred ceEEEEEEeCCCEEEeccccc-CCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCC-CccceEecCCCCCCCCCE
Q 018198 186 GSGAGFLWDQDGHIVTNYHVI-CGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH-ELRPIHVSVSADLRVGKK 263 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv-~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~-~~~~~~l~~~~~~~~G~~ 263 (359)
++|-||.|++. ..+|+-||+ .+.+++. | .+...+..+..-+++.+++..+.. ++.-+.|.. ....|.-
T Consensus 26 gsgwgfwVS~~-~fIT~tHV~p~~~~e~f-----G--~p~~~i~v~~~GEf~~~rfpk~~rpdvsgmiLEe--g~peGtV 95 (194)
T 2fyq_A 26 GSGWGFWVSPT-VFITTTHVVPTGVKEFF-----G--EPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEE--GCPEGTV 95 (194)
T ss_dssp TTEEEEESSSS-EEEEEGGGSCSSCSEET-----T--EEGGGEEEEEETTEEEEEESSCSCTTSCCCEECS--SCCTTCE
T ss_pred cCceeEEEccc-EEEEEeeecCCCChhhc-----C--ceeeeEEEeecCcEEEEEcCCCcCCCCcceEEec--CCCCCcE
Confidence 47999999987 999999999 4444331 1 111224445667889999976542 455566643 2334776
Q ss_pred EEE-EecCCCC--CCceeEeEEeeeecccC-CcccccEEE-------EcccCCCCCccceeecCC---CeEEEEEeeecC
Q 018198 264 IYA-IGHPLGW--SFTCTTGVISALDREIP-GRLIQGVIQ-------IDASVNLGNSGGPLLDSS---GSLIGVNTFITS 329 (359)
Q Consensus 264 v~~-iG~p~~~--~~~~~~G~vs~~~~~~~-~~~~~~~i~-------~~~~~~~G~SGgPl~~~~---G~viGi~~~~~~ 329 (359)
+.+ +-.+.+. +..+..|.+...+-.-. -.....++. .|-...||+-|.|-+-.. --|+|++.+...
T Consensus 96 ~silikR~sgellPlaVRmgt~as~kIqGk~v~gqtGmlltganaK~mdLGT~PGDCGcPYvykrgndwvv~GVH~Aatr 175 (194)
T 2fyq_A 96 CSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATK 175 (194)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEEEEETTEEEEEEEEEECC-----------CGGGTTCEEEEEETTEEEEEEEEEEECS
T ss_pred EEEEEecCCCCcceEEEEecceeeeEEeeeEecceeeeEEecCCcccCcCCCCCCCCCCceEEeeCCceEEEEEEEeecc
Confidence 654 3344443 23445555544421110 000011222 244567899999998553 369999999886
Q ss_pred CCcc
Q 018198 330 GAFS 333 (359)
Q Consensus 330 ~~~~ 333 (359)
+++.
T Consensus 176 sgNt 179 (194)
T 2fyq_A 176 SGNT 179 (194)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 6543
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0035 Score=59.09 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=61.6
Q ss_pred CCcEEEeee--cccccCCcceeeeeeeeccccceeeEEEEeec------------CCCCccchhhhhhhhccceeeeeEe
Q 018198 12 GAGIVMHSA--SKFIARHSDVMACGIAVNSERVQRHTISVFVG------------DESGILSRIDGVFTRRNCNIESLGV 77 (359)
Q Consensus 12 g~d~~~~s~--tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~------------~~G~~lsp~~a~l~~RG~~tl~lr~ 77 (359)
.+|+.++|+ ||++++ ++ +|.++++++.+.+ .+..+.. -.+..++++.+++.+++++.+.-++
T Consensus 179 ~~d~~~~S~~~~K~l~~-g~--gG~~~~~~~~l~~-~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~ 254 (377)
T 3ju7_A 179 FSGMIIYSFHATKPFGI-GE--GGLIYSKNEEDIQ-RIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKL 254 (377)
T ss_dssp CSSEEEEECBTTSSSCC-BS--CEEEEESCHHHHH-HHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHH
T ss_pred CCcEEEEECCCCCcCCC-CC--cEEEEECCHHHHH-HHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 489999995 799998 64 7888887766543 1111111 1245689999999999999998888
Q ss_pred ecccCCceEEEEEEECChhHHHHHHHHHhhhhce
Q 018198 78 IGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNV 111 (359)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v 111 (359)
++. .++++.+.+.|++++.+
T Consensus 255 -----~~~---------~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 255 -----KER---------TRISEWYKQLLQSNGLM 274 (377)
T ss_dssp -----HHH---------HHHHHHHHHHHHHTTTT
T ss_pred -----HHH---------HHHHHHHHHHhcCCCCc
Confidence 777 88999999999987643
|
| >2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} SCOP: b.47.1.3 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.075 Score=43.11 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=64.8
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEE
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIY 265 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~ 265 (359)
-.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++= .- -+-+|. ..-.-+++|.
T Consensus 20 Q~GVGv~~--~GVFHTmWHVTrGa~---l~~-~g~~~--~P~wa~V~~Dlis--YG------G~WkL~--~kW~g~~eVq 81 (172)
T 2fp7_B 20 QAGAGVMV--EGVFHTLWHTTKGAA---LMS-GEGRL--DPYWGSVKEDRLC--YG------GPWKLQ--HKWNGHDEVQ 81 (172)
T ss_dssp EEEEEEEE--TTEEEEEHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--ES------SSCCCC--CCCCSSSCEE
T ss_pred eeeeEEee--CCEEEeeeeecCCce---EEE-CCcEe--cceeehheeceee--cC------CccccC--cccCCCceEE
Confidence 35667665 578999999988763 222 23332 2223355667642 11 122342 2333456777
Q ss_pred EEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeee
Q 018198 266 AIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI 327 (359)
Q Consensus 266 ~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~ 327 (359)
++-.+.+..... ..|...-. .. +.-.+..+..+|.||+|++|.+|+|||+--.+
T Consensus 82 l~a~~Pgk~~~n~qt~Pg~f~~~-----~G---eigaI~lD~p~GtSGSPIin~~G~vVGLYGNG 138 (172)
T 2fp7_B 82 MIVVEPGKNVKNVQTKPGVFKTP-----EG---EIGAVTLDYPTGTSGSPIVDKNGDVIGLYGNG 138 (172)
T ss_dssp EEECCTTSCCEEEEECCEEEEET-----TE---EEEEECCCCCGGGTTCEEECTTSCEEEESCCE
T ss_pred EEEECCCCceEEEEccCceEecC-----CC---eEEEEECCCCCCCCCCceEccCCcEEEEecce
Confidence 777766544322 22222111 11 12233345567999999999999999986555
|
| >2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B | Back alignment and structure |
|---|
Probab=93.96 E-value=0.076 Score=43.51 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=75.9
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHI 240 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v 240 (359)
++...|-+|.... .+. ..-.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++= .
T Consensus 16 ~l~dGvYRI~~~g----l~G---~~Q~GVGv~~--~GVFHTmWHVTrGa~---L~~-~g~~l--~P~wasV~~Dlis--Y 78 (185)
T 2ggv_B 16 DTTTGVYRIMTRG----LLG---SYQAGAGVMV--EGVFHTLWATTKGAA---LMS-GEGRL--DPYWGSVKEDRLC--Y 78 (185)
T ss_dssp CCCSEEEEEEEEC----SSS---EEEEEEEEEE--TTEEEECHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--E
T ss_pred cCCCcEEEEEecc----ccc---cceeeeEEee--CCEEEeeeeecCcce---EEE-CCcEe--cceeehhhcceee--c
Confidence 4677888887643 221 2235666665 588999999988863 222 33333 2223455667642 1
Q ss_pred cCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCC
Q 018198 241 DAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSS 317 (359)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~ 317 (359)
- -+-+|. ..-.-+++|.++-++.+..... ..|...-. .. +.-.+..+...|.||+|++|.+
T Consensus 79 G------G~WkL~--~kW~g~~eVql~av~Pgk~~~nvQt~Pg~f~~~-----~G---eigAI~lD~p~GTSGSPIin~~ 142 (185)
T 2ggv_B 79 G------GPWQLQ--HKWNGQDEVQMIVVEPGRNVKNVQTKPGVFKTP-----EG---EIGAVTLDFPTGTSGSPIVDKN 142 (185)
T ss_dssp S------SSCCCC--CCCCSSSCEEEEECCTTSCCEEEEECCEEEEET-----TE---EEEEECCCCCGGGTTCEEECTT
T ss_pred C------CcccCc--cccCCCceEEEEEECCCCceEEEEccCceEecC-----CC---eEEEEECCCCCCCCCCceEcCC
Confidence 1 122342 2333457777777776644322 22222111 11 1223344556799999999999
Q ss_pred CeEEEEEeee
Q 018198 318 GSLIGVNTFI 327 (359)
Q Consensus 318 G~viGi~~~~ 327 (359)
|++||+--.+
T Consensus 143 G~vvGLYGNG 152 (185)
T 2ggv_B 143 GDVIGLYGNG 152 (185)
T ss_dssp SCEEEEEEEE
T ss_pred CcEEEEecce
Confidence 9999997666
|
| >2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein-prote complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.11 Score=42.64 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=74.6
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEE
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLH 239 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~ 239 (359)
..+...|-+|....- +. ..-.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++=
T Consensus 16 ~~l~dGvYRI~~~gl----~G---~~Q~GVGv~~--~GVFHTmWHVTrGa~---l~~-~g~~l--~P~wa~V~~Dlis-- 78 (185)
T 2fom_B 16 AELEDGAYRIKQKGI----LG---YSQIGAGVYK--EGTFHTMWHVTRGAV---LMH-KGKRI--EPSWADVKKDLIS-- 78 (185)
T ss_dssp --CCSEEEEEEEEET----TE---EEEEEEEEEE--TTEEEEEHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--
T ss_pred ccCCCcEEEEEeccc----cc---cceeeeEEee--CCEEEeeeeecCcce---EEE-CCcEe--cceeehheeceee--
Confidence 347788888876432 21 2235666655 588999999988863 222 23332 1223355667642
Q ss_pred EcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCcee---EeEEeeeecccCCcccccEEEEcccCCCCCccceeecC
Q 018198 240 IDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCT---TGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDS 316 (359)
Q Consensus 240 v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~---~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~ 316 (359)
.- -+-+|. ..-.-+++|.++-.+.+...... .|...-. .+ +.-.+..+..+|.||+|++|.
T Consensus 79 YG------G~WkL~--~kW~g~~eVql~av~Pgk~~~nvQt~Pg~f~~~----~G----eigaI~lD~p~GTSGSPIin~ 142 (185)
T 2fom_B 79 YG------GGWKLE--GEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTN----TG----TIGAVSLDFSPGTSGSPIVDK 142 (185)
T ss_dssp ES------SSCCCC--CCCCTTCCEEEEECCTTSCCEEEEECCEEEECS----SC----EEEEECCCSCGGGTTCEEECT
T ss_pred cC------CcccCc--cccCCCceEEEEEECCCCceEEEEcCCceeecC----CC----eEEEEECCCCCCCCCCceEcc
Confidence 11 122342 12233567777777666443222 2222111 11 122334455679999999999
Q ss_pred CCeEEEEEeee
Q 018198 317 SGSLIGVNTFI 327 (359)
Q Consensus 317 ~G~viGi~~~~ 327 (359)
+|+|||+--.+
T Consensus 143 ~G~vvGLYGNG 153 (185)
T 2fom_B 143 KGKVVGLYGNG 153 (185)
T ss_dssp TSCEEEETTCE
T ss_pred CCcEEEEecce
Confidence 99999986555
|
| >3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} SCOP: b.47.1.3 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.11 Score=42.94 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=77.6
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEE
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLH 239 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~ 239 (359)
..+...|-+|....- ++ ..-.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++=
T Consensus 20 ~~l~dGVYRI~~~gl----~G---~~Q~GVGv~k--~GVFHTMWHVTrGa~---l~~-~g~~l--~P~WasV~~Dlis-- 82 (198)
T 3e90_B 20 GDTTTGVYRIMTRGL----LG---SYQAGAGVMV--EGVFHTLWHTTKGAA---LMS-GEGRL--DPYWGSVKEDRLC-- 82 (198)
T ss_dssp CCCCSEEEEEEEEET----TE---EEEEEEEEEE--TTEEEECHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--
T ss_pred ccCCCceEEEEeccc----cc---cceeeeEEee--CCEEEeeeeecCcce---EEE-CCcEe--cceeehheeceee--
Confidence 357788889987542 21 2235666654 588999999988863 222 23332 2233455667641
Q ss_pred EcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecC
Q 018198 240 IDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDS 316 (359)
Q Consensus 240 v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~ 316 (359)
.-. +-+|. ..-.-.+.|.++-++.+..... ..|...-. +. +.-.+..+..+|.||+|++|.
T Consensus 83 YGG------~WkL~--~~W~g~~eVQl~Av~Pgk~~~~~Qt~PG~f~~~-----~g---~iGaV~lD~p~GTSGSPIin~ 146 (198)
T 3e90_B 83 YGG------PWKLQ--HKWNGQDEVQMIVVEPGKNVKNVRTKPGVFKTP-----EG---EIGAVTLDFPTGTSGSPIVDK 146 (198)
T ss_dssp ESS------SCCCC--CCCCSSSCEEEEECCTTSCCEEEEECCEEEEET-----TE---EEEEECCCCCTTCTTCEEECT
T ss_pred cCC------cccCC--cccCCCceEEEEEECCCCceEEEEeCCeEEEcC-----CC---eEEEEECCCCCCCCCCceecC
Confidence 111 22442 2222237788888877655432 23433211 11 122334455679999999999
Q ss_pred CCeEEEEEeeec
Q 018198 317 SGSLIGVNTFIT 328 (359)
Q Consensus 317 ~G~viGi~~~~~ 328 (359)
+|+|||+--.+.
T Consensus 147 ~G~VVGLYGNGv 158 (198)
T 3e90_B 147 NGDVIGLYGNGV 158 (198)
T ss_dssp TCCEEEECCCEE
T ss_pred CCcEEEEecceE
Confidence 999999855443
|
| >3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} SCOP: b.47.1.3 PDB: 3u1i_B | Back alignment and structure |
|---|
Probab=93.70 E-value=0.17 Score=41.61 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=77.1
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEE
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLH 239 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~ 239 (359)
..+..-|-+|....- +. ..-.|-|+.- +|-+=|.+||-+++. +.. +++.+ .....|-..|++=
T Consensus 25 ~~~~dGVYRI~~~gl----~G---~~Q~GVGv~k--~GVFHTMWHVTrGa~---l~~-~g~~l--~P~wasV~~Dlis-- 87 (191)
T 3u1j_B 25 AELEEGVYRIKQQGI----FG---KTQVGVGVQK--EGVFHTMWHVTRGAV---LTH-NGKRL--EPNWASVKKDLIS-- 87 (191)
T ss_dssp CCCCSEEEEEEEEET----TE---EEEEEEEEEE--TTEEEEEHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--
T ss_pred ccCCCceEEEEeccc----cc---cceeeeEEee--CCEEEeeeeecCcce---EEE-CCcEe--cceeecceeceee--
Confidence 457788889987542 21 2235666654 588999999988763 222 23332 2223455667641
Q ss_pred EcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecC
Q 018198 240 IDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDS 316 (359)
Q Consensus 240 v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~ 316 (359)
.-. +-+|. ..=.-.+.|.++-++.+..... ..|...- ... +.-.+..+..+|.||+|++|.
T Consensus 88 YGG------~WkL~--~~W~g~~eVQl~Av~Pgk~~~~~Qt~PG~f~~-----~~g---~iGaV~lD~p~GTSGSPIin~ 151 (191)
T 3u1j_B 88 YGG------GWRLS--AQWQKGEEVQVIAVEPGKNPKNFQTMPGTFQT-----TTG---EIGAIALDFKPGTSGSPIINR 151 (191)
T ss_dssp ESS------SCCCC--CCCCTTCCEEEEECCTTSCCEEEEECCEEEEC-----SSC---EEEEECCCCCTTCTTCEEECT
T ss_pred cCC------cccCC--cccCCCceEEEEEECCCCceEEEEeCCeEEEc-----CCC---eEEEEECCCCCCCCCCceecC
Confidence 111 22342 1112246788888877655432 2333321 111 122334455679999999999
Q ss_pred CCeEEEEEeeec
Q 018198 317 SGSLIGVNTFIT 328 (359)
Q Consensus 317 ~G~viGi~~~~~ 328 (359)
+|+|||+--.+.
T Consensus 152 ~G~VVGLYGNG~ 163 (191)
T 3u1j_B 152 EGKVVGLYGNGV 163 (191)
T ss_dssp TSCEEEECCBEE
T ss_pred CCcEEEEecCeE
Confidence 999999855543
|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.22 Score=36.18 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=52.5
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECC-hhHHHHHHHHHhhhhce
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGT-DRELQQVVKQLQKLVNV 111 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~-~~~~~~i~~~L~k~~~v 111 (359)
..+.....+..|.++.+...+..+|.|++++...... +...+.+.++.. ....++|.+.|+++.+.
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999994333 555666666533 46789999999987654
|
| >3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.16 Score=43.23 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=72.7
Q ss_pred eeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCC
Q 018198 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN 244 (359)
Q Consensus 165 svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~ 244 (359)
.|-+|.... .++ ..-.|-|+.- +|.+=|-+||-.++. +.. +++.+ .....|-..|++= .-.
T Consensus 71 GvYRI~~~g----l~G---~~Q~GVGv~~--~GVFHTmWHVTrGa~---l~~-~g~~~--~P~wa~V~~Dlis--YGG-- 131 (236)
T 3lkw_A 71 GIYRILQRG----LLG---RSQVGVGVFQ--EGVFHTMWHVTRGAV---LMY-QGKRL--EPSWASVKKDLIS--YGG-- 131 (236)
T ss_dssp EEEEEEEEE----TTE---EEEEEEEEEE--TTEEEECHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--ESS--
T ss_pred cEEEEEecc----ccc---cceeeeEEee--CCEEEEeeeecCcce---EEE-CCcEe--cceeehheeceee--cCC--
Confidence 777777643 121 2235666654 588999999988863 222 23332 1223355667541 111
Q ss_pred CCccceEecCCCCCCCCCEEEEEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEE
Q 018198 245 HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLI 321 (359)
Q Consensus 245 ~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~vi 321 (359)
+-+|. ..=.-.+.|.++-++.+..... ..|...-. +. +.-.+..+..+|.||+|++|.+|+||
T Consensus 132 ----~WkL~--~~W~g~~eVqv~A~~Pg~~~~~~qt~PG~~~~~-----~g---~igav~lD~p~GTSGSPIin~~G~Vv 197 (236)
T 3lkw_A 132 ----GWRFQ--GSWNAGEEVQVIAVEPGKNPKNVQTAPGTFKTP-----EG---EVGAIALDFKPGTAGSPIVNREGKIV 197 (236)
T ss_dssp ----SCCCC--CCCCTTCCEEEEECCTTSCCEEEEECCEEEEET-----TE---EEEEECCCCCTTCTTCEEECTTSCEE
T ss_pred ----CccCC--cccCCCceEEEEEECCCCceEEEEeCCeEEEcC-----CC---eEEEEECCCCCCCCCCceecCCCcEE
Confidence 22342 1212346788888877655432 23433211 11 12233444567999999999999999
Q ss_pred EEEeeec
Q 018198 322 GVNTFIT 328 (359)
Q Consensus 322 Gi~~~~~ 328 (359)
|+--.+.
T Consensus 198 GLYGnG~ 204 (236)
T 3lkw_A 198 GLYGNGV 204 (236)
T ss_dssp EESCCEE
T ss_pred EEecceE
Confidence 9855443
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.0071 Score=56.80 Aligned_cols=63 Identities=19% Similarity=0.005 Sum_probs=47.0
Q ss_pred ccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeee
Q 018198 8 PLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESL 75 (359)
Q Consensus 8 p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~l 75 (359)
|+++|+|+++.|++|+++| ..+|.++++.+.+ + .+.......+..++++.++....+++.+..
T Consensus 194 ~~~~~~di~~~S~sK~l~g---~~~G~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~a~~~al~~~~~ 256 (374)
T 2aeu_A 194 ALKLGADLVVTSTDKLMEG---PRGGLLAGKKELV-D-KIYIEGTKFGLEAQPPLLAGIYRALKNFNL 256 (374)
T ss_dssp HHHHTCSEEEEETTSSSSS---CSCEEEEEEHHHH-H-HHHHHHHTTTCBCCHHHHHHHHHHHHHCCH
T ss_pred ccccCCcEEEecCcccccC---cceEEEEECHHHH-H-HHHHhhccccCCCCHHHHHHHHHHHHHHhH
Confidence 6788999999999999988 3567777765433 2 233334556778899999999999887654
|
| >1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} SCOP: b.47.1.3 PDB: 1ep6_A 3j0c_C | Back alignment and structure |
|---|
Probab=92.69 E-value=0.11 Score=40.26 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.0
Q ss_pred EEcccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 299 QIDASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 299 ~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.-.....+|+||-|++|..|+||+|+-.+.+
T Consensus 98 ip~G~g~~GdSGrpI~Dn~GrVVaIVlGGa~ 128 (157)
T 1ep5_B 98 VPKGVGAKGDSGRPILDNQGRVVAIVLGGVN 128 (157)
T ss_dssp EETTCCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred eccCCCCCCCCCCccCcCCCcEEEEEecCCC
Confidence 3345667899999999999999999988763
|
| >1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.27 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=26.0
Q ss_pred EEcccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 299 QIDASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 299 ~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.-.....+|+||-|++|..|+||+|+-.+..
T Consensus 91 vp~G~g~~GdSGrpI~Dn~GrVVaIVlGG~~ 121 (149)
T 1vcp_A 91 IPTGAGKPGDSGRPIFDNKGRVVAIVLGGAN 121 (149)
T ss_dssp EETTSCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred ecccCCCCCCCCCccCcCCCcEEEEEecCCC
Confidence 3345567899999999999999999988764
|
| >4agk_A Capsid protein, coat protein, C; hydrolase, viral protein; 1.81A {Aura virus} PDB: 4agj_A 1kxa_A 2snw_A 1svp_A 1kxb_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.17 Score=39.18 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.1
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.....+|+||-|++|..|+||+|+-.+..
T Consensus 101 ~g~g~~GdSGrPi~Dn~GrVVaIVlGG~n 129 (158)
T 4agk_A 101 TGAGGPGDSGRPILDNSGKVVAIVLGGAN 129 (158)
T ss_dssp TTSSCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred cccCCCCCCCCccccCCCCEEEEEecCCC
Confidence 44567899999999999999999988764
|
| >2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.3 Score=41.38 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.2
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.....+||||-|+||..|+||+|+-.+.+
T Consensus 197 ~G~G~~GDSGRpI~DN~GrVVaIVLGGan 225 (253)
T 2yew_A 197 TGSGKPGDSGRPIFDNTGKVVAIVLGGAN 225 (253)
T ss_dssp TTSCCSSCTTCEEECSSCBEEEEEEEEEE
T ss_pred cCCCCCCCCCCccccCCCcEEEEEecCCC
Confidence 44567899999999999999999998764
|
| >1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A | Back alignment and structure |
|---|
Probab=91.76 E-value=0.37 Score=37.45 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.4
Q ss_pred EcccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 300 IDASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 300 ~~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
-.....+|+||-|++|..|+||+|+-.+..
T Consensus 101 p~GvG~~GDSGRpI~DN~GrVVaivlgg~~ 130 (161)
T 1svp_A 101 PRGVGGRGDAGRPIMDNSGRVVAIVLGGAD 130 (161)
T ss_dssp ETTSCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred cccCCCCCCCCCccCcCCCcEEEEEecCCC
Confidence 344567899999999999999999988764
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=91.08 E-value=0.5 Score=39.68 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=51.6
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhh
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLV 109 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~ 109 (359)
..+.....+..|.++.+.++|..+|+|++.++... ..+.-.|++.+..+....++|.+.|+++.
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~~~f~~~~~v~~~~~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISGSPSNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cCCceEEEEEEecCCCCHHHHHHHHHHHH
Confidence 35778899999999999999999999999999944 44555567777766667888888888654
|
| >1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A | Back alignment and structure |
|---|
Probab=90.43 E-value=0.39 Score=41.04 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.1
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.....+||||-|++|..|+||+|+-.+.+
T Consensus 207 ~G~G~~GDSGRpI~DN~GrVVaIVLGGan 235 (264)
T 1kxf_A 207 RGVGGRGDSGRPIMDNSGRVVAIVLGGAD 235 (264)
T ss_dssp TTSCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred ccCCCCCCCCCccccCCCcEEEEEecCCC
Confidence 44567899999999999999999988763
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.12 Score=50.51 Aligned_cols=87 Identities=6% Similarity=-0.104 Sum_probs=48.9
Q ss_pred cCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCcc------------chhhhhhhhc--cceeeeeE
Q 018198 11 FGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGIL------------SRIDGVFTRR--NCNIESLG 76 (359)
Q Consensus 11 ~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~l------------sp~~a~l~~R--G~~tl~lr 76 (359)
.|+|++..|.+||+.++.++ |.+..+++.+....+.....-+|+.. .....|..++ |.+.+.-+
T Consensus 266 ~~~D~v~~s~hK~l~~p~g~--G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~ 343 (502)
T 3hbx_A 266 PLVKSINVSGHKYGLVYAGI--GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNV 343 (502)
T ss_dssp TTEEEEEEETTTTTCCCSSC--EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEECcccccCCCCCe--EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999998886 44444433221101111111122211 2344455544 33333334
Q ss_pred eecccCCceEEEEEEECChhHHHHHHHHHhhhhceee
Q 018198 77 VIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLK 113 (359)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~ 113 (359)
+ ++. .+.++.+.++|++++.+.-
T Consensus 344 ~-----~~~---------~~~a~~l~~~L~~~~~~~~ 366 (502)
T 3hbx_A 344 M-----ENC---------RENMIVLREGLEKTERFNI 366 (502)
T ss_dssp H-----HHH---------HHHHHHHHHHHHTTTCEEE
T ss_pred H-----HHH---------HHHHHHHHHHHHhCCCEEE
Confidence 4 555 6788889999998876543
|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
Probab=88.98 E-value=1 Score=38.58 Aligned_cols=72 Identities=11% Similarity=0.344 Sum_probs=54.6
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeeccc----CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeeccC
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN----KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTKQS 119 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~----~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~~~ 119 (359)
.+....++..|.|+.+...+..-+.|++++...... .+...|++.+... ..+++.+.|+++++|.+|....+
T Consensus 6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~~ 81 (223)
T 1y7p_A 6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEES 81 (223)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEECC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEcc
Confidence 567788999999999999999999999999994433 2345566444443 99999999999999999998643
|
| >3su6_A NS3 protease, NS4A protein; drug resistance, drug design, protease inhibitors, serine PR viral protein, hydrolase-inhibitor complex; HET: SU3; 1.10A {Hepatitis c virus} PDB: 3su2_A* 3sv9_A* 3m5l_A* 3m5m_A* 3m5n_A 3m5o_A 3rc4_A 3rc5_A 3rc6_A 3su3_A* 3su4_A* 3sv6_A* 3sv7_A* 3su1_A* 3su5_A* 3sv8_A* 3su0_A* 2p59_A* 2qv1_A 1a1q_A ... | Back alignment and structure |
|---|
Probab=88.71 E-value=0.57 Score=38.47 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=30.4
Q ss_pred cCCCCCccceeecCCCeEEEEEeeec-CCCcceeEEEEehHHHH
Q 018198 303 SVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSGIGFALPIDTVR 345 (359)
Q Consensus 303 ~~~~G~SGgPl~~~~G~viGi~~~~~-~~~~~~~~~aip~~~i~ 345 (359)
....|.||||++-.+|.+|||..+.. ..+...--.++|.+.+.
T Consensus 154 S~lkGSSGgPvLC~~GHaVGmf~aav~trGvakai~fvPve~l~ 197 (203)
T 3su6_A 154 SYLKGSAGGPLLCPAGHAVGIFRTAVSTRGVAKAVDFIPVESLE 197 (203)
T ss_dssp GGTTTCTTCEEECTTSCEEEEEEEEEEETTEEEEEEEEEHHHHH
T ss_pred eeccCCCCCceecCCCCEEEEEEEEEEcCceeeeEEEEEccccc
Confidence 34569999999988999999986654 22323334457987654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=0.11 Score=48.04 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=50.2
Q ss_pred ccccCC--cEEEeee--cccccCCcceeeeeeeeccccceeeEEEEeec------------CCCCccchhhhhhhhccce
Q 018198 8 PLEFGA--GIVMHSA--SKFIARHSDVMACGIAVNSERVQRHTISVFVG------------DESGILSRIDGVFTRRNCN 71 (359)
Q Consensus 8 p~~~g~--d~~~~s~--tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~------------~~G~~lsp~~a~l~~RG~~ 71 (359)
...+|. |+++.|+ +|+++++++ +|.++++++.+.+ .+..+.. .....+++..+.+.+..++
T Consensus 167 ~~~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~-~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~ 243 (367)
T 3nyt_A 167 GKRSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELAT-AIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE 243 (367)
T ss_dssp TEETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHH-HHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH
T ss_pred CeeccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHH-HHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH
Confidence 334455 9999995 999999888 7888886655432 1111100 1245577888877776665
Q ss_pred eeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhh
Q 018198 72 IESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKL 108 (359)
Q Consensus 72 tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~ 108 (359)
.+.-.. ++. .+..+.+.+.|+++
T Consensus 244 ~~~~~~-----~~~---------~~~~~~~~~~L~~~ 266 (367)
T 3nyt_A 244 IFEEEI-----ALR---------QKVAAEYDLSLKQV 266 (367)
T ss_dssp THHHHH-----HHH---------HHHHHHHHHHHHHT
T ss_pred HHHHHH-----HHH---------HHHHHHHHHHhccC
Confidence 432222 333 45556666666665
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=2.3 Score=40.18 Aligned_cols=71 Identities=7% Similarity=0.221 Sum_probs=59.1
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
++....+|.+|+++.+...|...|+|+....+.. ..+...|.+-++.....-+.+.++|++++.+.++.++
T Consensus 333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 5678889999999999999999999999999943 4455677777777644667999999999999988753
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=85.84 E-value=2.5 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=43.8
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecccC-CceEEEEEEECChhHHHHHHHH
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNK-DRALFTMVVFGTDRELQQVVKQ 104 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ 104 (359)
+.+++...+.|.+|.++.+...|..+|+|+..+......+ ...|++ ..+.+.+.++.++
T Consensus 5 ~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~---~~d~~~a~~~L~~ 64 (144)
T 2f06_A 5 VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI---VSDPDKAYKALKD 64 (144)
T ss_dssp EEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE---ESCHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE---eCCHHHHHHHHHH
Confidence 4568888999999999999999999999999998854332 224554 3566666665544
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=80.33 E-value=5.1 Score=37.92 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=57.1
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
+++...++|.+|+++.++..|...|+|+...-. .+..+.....+-++.-.+..+.+.++|++++.+.++..
T Consensus 344 ~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~-~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~ 414 (416)
T 3k5p_A 344 TRFMHVHENRPGILNSLMNVFSHHHINIASQFL-QTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARL 414 (416)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEE-EECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhc-cCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEE
Confidence 467889999999999999999999999999887 44445555555554225567899999999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d2z9ia2 | 221 | b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu | 6e-32 | |
| d1lcya2 | 205 | b.47.1.1 (A:6-210) Mitochondrial serine protease H | 1e-30 | |
| d1l1ja_ | 228 | b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic | 2e-29 | |
| d2qaaa1 | 185 | b.47.1.1 (A:16-242) Protease B {Streptomyces grise | 1e-27 | |
| d1ky9a2 | 249 | b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata | 4e-27 | |
| d2sgaa_ | 181 | b.47.1.1 (A:) Protease A {Streptomyces griseus, st | 1e-26 | |
| d1qtfa_ | 246 | b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus | 4e-26 | |
| d2h5ca1 | 198 | b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobac | 1e-24 | |
| d2qf3a1 | 210 | b.47.1.1 (A:43-252) Stress sensor protease DegS, c | 2e-23 | |
| d2bhga1 | 199 | b.47.1.4 (A:7-205) 3C cysteine protease (picornain | 5e-23 | |
| d1agja_ | 242 | b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A | 6e-23 | |
| d2fgca2 | 78 | d.58.18.6 (A:27-104) Acetolactate synthase small s | 1e-22 | |
| d2pc6a2 | 77 | d.58.18.6 (A:1-77) Acetolactate synthase small sub | 1e-21 | |
| d2f1fa1 | 76 | d.58.18.6 (A:2-77) Acetolactate synthase small sub | 2e-21 | |
| d1lvmb_ | 219 | b.47.1.3 (B:) TEV protease (nucleat inclusion prot | 2e-18 | |
| d1hpga_ | 187 | b.47.1.1 (A:) Glutamic acid-specific protease {Str | 1e-14 | |
| d2o8la1 | 216 | b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur | 3e-12 | |
| d1sc6a3 | 84 | d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena | 4e-12 | |
| d2f06a2 | 70 | d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B | 2e-10 | |
| d1ygya3 | 78 | d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena | 9e-09 | |
| d1p3ca_ | 215 | b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int | 1e-08 | |
| d1n8pa_ | 393 | c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba | 2e-07 | |
| d1y7pa2 | 77 | d.58.18.12 (A:2-78) Hypothetical protein AF1403, N | 3e-06 | |
| d1u8sa1 | 86 | d.58.18.5 (A:2-87) putative transcriptional repres | 1e-04 | |
| d1cqqa_ | 180 | b.47.1.4 (A:) 3C cysteine protease (picornain 3C) | 3e-04 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 6e-04 | |
| d2ctza1 | 421 | c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry | 0.002 |
| >d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease PepD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 117 bits (293), Expect = 6e-32
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 34/225 (15%)
Query: 157 RIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVK--- 213
++ + + SVV + +++ G+G + +G I+TN HVI A+
Sbjct: 5 QVAAKVVPSVVML--------ETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGS 56
Query: 214 ------VSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAI 267
V+FSD T VVG D +D+AV+ + + S S+DLRVG+ + AI
Sbjct: 57 PPPKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGS-SSDLRVGQPVLAI 115
Query: 268 GHPLGWSFTCTTGVISALDREIPG-------RLIQGVIQIDASVNLGNSGGPLLDSSGSL 320
G PLG T TTG++SAL+R + + IQ DA++N GNSGG L++ + L
Sbjct: 116 GSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQL 175
Query: 321 IGVNTFI---------TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
+GVN+ I G+GFA+P+D + I D+L+ +
Sbjct: 176 VGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK 220
|
| >d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Mitochondrial serine protease HtrA2, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 1e-30
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 9/195 (4%)
Query: 158 IFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS 217
+ E+ +VV+I L R E +G+GF+ DG IVTN HV+ V+V
Sbjct: 15 VVEKTAPAVVYIEILD-RHPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLL 73
Query: 218 DQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC 277
T+ A V D V D+A L I L + + SAD+R G+ + A+G P T
Sbjct: 74 SGDTYEAVVTAVDPVADIATLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTI 132
Query: 278 TTGVISALDREIP----GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFS 333
T+G++S+ R + IQ DA+++ GN+GGPL++ G +IGVNT + +
Sbjct: 133 TSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT---A 189
Query: 334 GIGFALPIDTVRGIV 348
GI FA+P D +R +
Sbjct: 190 GISFAIPSDRLREFL 204
|
| >d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease Do (DegP, HtrA), catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 111 bits (277), Expect = 2e-29
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 24/221 (10%)
Query: 156 IRIFEENISSVVWIGNLGIREDQSETEFLR-------------------GSGAGFLWDQD 196
+ + E +VV I + + + G+GF++D +
Sbjct: 7 VNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPE 66
Query: 197 GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSA 256
G+I+TNYHV+ GA + V+ D S + A+ +G D+ D+AV+ I A + + + S
Sbjct: 67 GYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSD 126
Query: 257 DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQG----VIQIDASVNLGNSGGP 312
+++G+ AIG+PLG+ T T GV+SA +R IP G +IQ DA++N GNSGGP
Sbjct: 127 KVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAAINPGNSGGP 186
Query: 313 LLDSSGSLIGVNTFITSGAFS-GIGFALPIDTVRGIVDQLV 352
LL+ G +IG+NT I + + +GFA+PI+TV+ +D ++
Sbjct: 187 LLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL 227
|
| >d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 185 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease B species: Streptomyces griseus, strain k1 [TaxId: 1911]
Score = 104 bits (261), Expect = 1e-27
Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN--- 244
G + +T H GA+T + + + ND ++
Sbjct: 17 GFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIPK 76
Query: 245 -HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQI 300
+ ++ +A+ VG + G G +G ++AL+ + G ++ G+I+
Sbjct: 77 DGTVGGQDITSAANATVGMAVTRRGSTTGT----HSGSVTALNATVNYGGGDVVYGMIRT 132
Query: 301 DASVNLGNSGGPLLDSSGSLIGVNTFI-TSGAFSGIGFALPIDTV 344
+ G+SGGPL IG+ + + + G F P+
Sbjct: 133 NVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176
|
| >d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease Do (DegP, HtrA), catalytic domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 4e-27
Identities = 75/252 (29%), Positives = 121/252 (48%), Gaps = 23/252 (9%)
Query: 109 VNVLKVSTKQSSSSSLEPFFLPCSGVDSTPDFVGSQPCKLQMDELETIRIFEENISSVVW 168
V++ + ++ + F F G Q F +
Sbjct: 17 VSINVEGSTTVNTPRMPRNF---------QQFFGDDSPFCQEGSPFQSSPFCQG------ 61
Query: 169 IGNLGIREDQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVV 227
+ + G+G + D G++VTN HV+ A+ +KV SD F A++V
Sbjct: 62 ---GQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMV 118
Query: 228 GHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDR 287
G D +D+A++ I P + L I ++ S LRVG AIG+P G T T+G++SAL R
Sbjct: 119 GKDPRSDIALIQIQNPKN-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR 177
Query: 288 E-IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFALPIDTV 344
+ + IQ DA++N GN+GG L++ +G LIG+NT I G GIGFA+P + V
Sbjct: 178 SGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV 237
Query: 345 RGIVDQLVKFSR 356
+ + Q+V++ +
Sbjct: 238 KNLTSQMVEYGQ 249
|
| >d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease A species: Streptomyces griseus, strain k1 [TaxId: 1911]
Score = 102 bits (254), Expect = 1e-26
Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 9/161 (5%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
G + H +T H +++ + ++F G + ++ A +
Sbjct: 17 GFNVSVNGVAHALTAGHCTNISASWSIGTRTGTSFPNNDYGIIRHSNPAAADGRVYLYNG 76
Query: 248 RPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI---PGRLIQGVIQIDASV 304
++ + + VG+ + G G +G ++ L+ + ++ G+IQ +
Sbjct: 77 SYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATVNYGSSGIVYGMIQTNVCA 132
Query: 305 NLGNSGGPLLDSSGSLIGVNTFI-TSGAFSGIGFALPIDTV 344
G+SGG L + +G+ + + G F P+
Sbjct: 133 QPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEA 172
|
| >d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Exfoliative toxin B species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (255), Expect = 4e-26
Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 37/197 (18%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSDQSTFYAQVVG-------------- 228
G L IVTNYHV A+ + F+ A+
Sbjct: 47 STLATGVLIG-KNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIK 105
Query: 229 ---HDQVNDLAVLHIDAPNHE------LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTT 279
+ Q DLA++ + ++P ++ D+ G K +G+P +S
Sbjct: 106 ESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYS---AY 162
Query: 280 GVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGF 337
+ + + Q +GNSG + + G LIG+++ G+ F
Sbjct: 163 SLYQSQIE------MFNDSQYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFF 216
Query: 338 ALPIDTVRGIVDQLVKF 354
I ++ + +
Sbjct: 217 NRKISSLYSVDNTFGDT 233
|
| >d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: alpha-Lytic protease species: Lysobacter enzymogenes, 495 [TaxId: 69]
Score = 97.3 bits (241), Expect = 1e-24
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 11/175 (6%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
G VT H +T ++ + TF ND A + + + L
Sbjct: 20 GFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTF---AARVFPGNDRAWVSLTSAQTLL 76
Query: 248 RPIHVSVSADLRVGKKIYAIGHPLG-----WSFTCTTGVISALDREIPGRLIQGVIQIDA 302
+ S G A+G + + C T + ++G+ Q +A
Sbjct: 77 PRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNA 136
Query: 303 SVNLGNSGGPLLDSSGSLIGVNTFI---TSGAFSGIGFALPIDTVRGIVDQLVKF 354
+ G+SGG + S+G GV + ++G GI + + L ++
Sbjct: 137 CMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQY 191
|
| >d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Stress sensor protease DegS, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 94.1 bits (232), Expect = 2e-23
Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 15 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 74
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+ L I ++ +G + AIG+P T T G+ISA
Sbjct: 75 LLVGSDSLTDLAVLKIN-ATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 133
Query: 285 LDREIPGRL-IQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGA-----FSGIGFA 338
R Q +Q DAS+N GNSGG L++S G L+G+NT + GIGFA
Sbjct: 134 TGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFA 193
Query: 339 LPIDTVRGIVDQLVKF 354
+P I+D+L++
Sbjct: 194 IPFQLATKIMDKLIRD 209
|
| >d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Foot-and-mouth disease virus FMDV [TaxId: 12110]
Score = 92.9 bits (230), Expect = 5e-23
Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 14/177 (7%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-------STFYAQVVGHDQVNDLAVL 238
++V + + + F +V G D ++D A++
Sbjct: 23 AICCATGVFGTAYLVPRHLFAEKYDKIMLDGRAMTDSDYRVFEFEIKVKGQDMLSDAALM 82
Query: 239 HIDAPN-HELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLI 294
+ N H +A ++ G + + + +G + G +
Sbjct: 83 VLHRGNKVRDITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTM 142
Query: 295 QGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQL 351
G+ A+ G +GG +L G+ + S +G+G+ + R ++ ++
Sbjct: 143 PGLFAYKAATRAGYAGGAVLAKDGADTFI-VGTHSAGGNGVGYCSCVS--RSMLQKM 196
|
| >d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Epidermolytic (exfoliative) toxin A species: Staphylococcus aureus [TaxId: 1280]
Score = 93.9 bits (232), Expect = 6e-23
Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 34/196 (17%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVG---------------- 228
+ S G L ++ ++TN H+ A+ S + + G
Sbjct: 54 QTSATGVLIGKN-TVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQ 112
Query: 229 --HDQVNDLAVLHIDAPNH------ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTG 280
DLA++ + + ++ P + S DL+ G K+ IG+P
Sbjct: 113 EPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFD--HKVNQM 170
Query: 281 VISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI--TSGAFSGIGFA 338
S ++ + ++ GNSG + +S+G L+G+++ I +
Sbjct: 171 HRSEIEL----TTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYG 226
Query: 339 LPI-DTVRGIVDQLVK 353
+ I + V+ I+++ +
Sbjct: 227 VGIGNYVKRIINEKNE 242
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Score = 88.5 bits (220), Expect = 1e-22
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 42 VQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQ 100
++ H +S+ V ++ G++ ++ +F RR NI S+ V + ++V G D+ ++Q
Sbjct: 1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60
Query: 101 VVKQLQKLVNVLKVS 115
+ KQ KLV V+KV+
Sbjct: 61 IEKQAYKLVEVVKVT 75
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Score = 85.4 bits (212), Expect = 1e-21
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVV 102
RH IS+ + +E+G LSR+ G+F+ R NIESL V + + T+V G D ++Q+
Sbjct: 2 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61
Query: 103 KQLQKLVNVLKVS 115
KQL KL+ V+K+
Sbjct: 62 KQLNKLIEVVKLI 74
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Score = 85.1 bits (211), Expect = 2e-21
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV-IGLNKDRALFTMVVFGTDRELQQVV 102
R +SV + +ESG LSR+ G+F++R NIESL V + + T+ G ++ L+Q+
Sbjct: 1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60
Query: 103 KQLQKLVNVLKVS 115
KQL KLV+VL+VS
Sbjct: 61 KQLHKLVDVLRVS 73
|
| >d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Length = 219 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: TEV protease (nucleat inclusion protein A, NIA) species: Tobacco etch virus, TEV [TaxId: 12227]
Score = 80.5 bits (198), Expect = 2e-18
Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 7/169 (4%)
Query: 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFY---AQVVGHDQVNDLAVLHIDA 242
+ + + I+TN H+ + + S F + ++ ++ I
Sbjct: 26 HTTSLYGIGFGPFIITNKHLFRRNNGTLLVQSLHGVFKVKNTTTLQQHLIDGRDMIIIRM 85
Query: 243 PNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDA 302
P + + ++I + + ++ +
Sbjct: 86 PKDFPPFPQKLKFREPQREERICLVTTNFQTKSMSSMVSDTSCTFPSSD---GIFWKHWI 142
Query: 303 SVNLGNSGGPLLD-SSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQ 350
G G PL+ G ++G+++ + ++P + + + +Q
Sbjct: 143 QTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQ 191
|
| >d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Glutamic acid-specific protease species: Streptomyces griseus [TaxId: 1911]
Score = 69.6 bits (169), Expect = 1e-14
Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 9/165 (5%)
Query: 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
+ + VT H ++ S + ND ++ +
Sbjct: 16 AAFNVTKGGARYFVTAGHCTNISANWSASSGGS-VVGVREGTSFPTNDYGIVRYTDGSSP 74
Query: 247 LRPIHVSVSADL-RVGKKIYAIGHPLGWSFTCTTGVISALDRE-----IPGRLIQGVIQI 300
+ + + +G + S + T + + +++
Sbjct: 75 AGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRT 134
Query: 301 DASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSGIGFALPIDTV 344
A G+SGG +G+++ + +G P+
Sbjct: 135 TACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEA 178
|
| >d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: V8 protease species: Staphylococcus aureus [TaxId: 1280]
Score = 63.1 bits (152), Expect = 3e-12
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 17/173 (9%)
Query: 185 RGSGAGFLWDQDGHIVTNYHVICGASTVKV------------SFSDQSTFYAQVVGHDQV 232
+G + ++TN HV+ ++ + Q+ +
Sbjct: 33 TFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 91
Query: 233 NDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGR 292
DLA++ V A + + + + V + + +
Sbjct: 92 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKIT 151
Query: 293 LIQG-VIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTV 344
++G +Q D S GNSG P+ + +IG++ G + A+ I+
Sbjct: 152 YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---GVPNEFNGAVFINEN 201
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Score = 59.3 bits (144), Expect = 4e-12
Identities = 6/78 (7%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 37 VNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDR 96
V+ + + G+L+ ++ +F + NI + + + + + +
Sbjct: 4 VSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYL-QTSAQMGYVVIDIEADED 62
Query: 97 ELQQVVKQLQKLVNVLKV 114
++ ++ ++ + ++
Sbjct: 63 VAEKALQAMKAIPGTIRA 80
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Score = 54.3 bits (131), Expect = 2e-10
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVK 103
+S+F+ ++SG L+ + V + N N+ +L + N D + +V D+ + +
Sbjct: 3 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCI-AENADFGILRGIVSDPDKAYKALKD 61
Query: 104 Q 104
Sbjct: 62 N 62
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.8 bits (119), Expect = 9e-09
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVV 102
Q + + D G L +I + NI++ + + + T+++ V
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQL-SEDAEGPGATILLRLDQDVPDDVR 60
Query: 103 KQLQKLVNVLKVS 115
+ V+ K+
Sbjct: 61 TAIAAAVDAYKLE 73
|
| >d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Glutamyl endopeptidase species: Bacillus intermedius [TaxId: 1400]
Score = 52.4 bits (124), Expect = 1e-08
Identities = 26/179 (14%), Positives = 46/179 (25%), Gaps = 22/179 (12%)
Query: 181 TEFLRGSGAGFLWDQDGHIVTNYHVICGAST--------------------VKVSFSDQS 220
F S G L + I+TN H + ++ + ++
Sbjct: 25 ITFGGSSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFY 83
Query: 221 TFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTG 280
+ D AV+ D G I G+P +
Sbjct: 84 VPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKV 143
Query: 281 VISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFAL 339
+ + + GNSG +LD + ++GV+ S G
Sbjct: 144 SQWEMSGSVTRE-DTNLAYYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKA 201
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSR 60
+SP + PL FGA IV+HSA+K+I HSDV+ G+ + + + I S
Sbjct: 182 LSPYISNPLNFGADIVVHSATKYINGHSDVVL-GVLATNNKPLYERLQFLQNAIGAIPSP 240
Query: 61 IDGVFTRRNCNIESL 75
D T R L
Sbjct: 241 FDAWLTHRGLKTLHL 255
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.4 bits (100), Expect = 3e-06
Identities = 4/74 (5%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 47 ISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVF--GTDRELQQVVKQ 104
+ + ++ G+L + + NI + +++ + ++++++
Sbjct: 4 LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63
Query: 105 LQKLVNVLKVSTKQ 118
++ ++++ ++
Sbjct: 64 VKTFDYIIEIEEEE 77
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Score = 38.3 bits (89), Expect = 1e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVV 102
Q I+ D GI + + + T+ CNI + M++ G+ + +V
Sbjct: 4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFG-KEFTLLMLISGSPSNITRVE 62
Query: 103 KQLQKLVNVLKVSTK 117
L L + T
Sbjct: 63 TTLPLLGQQHDLITM 77
|
| >d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]} Length = 180 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Human rhinovirus 2 [TaxId: 12130]
Score = 39.1 bits (91), Expect = 3e-04
Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 196 DGHIVTNYHVICGASTVKVSFSDQST----FYAQVVGHDQVNDLAVLHIDAPNHELRPIH 251
D +V H G ++ +T Y + ++ VL +D N + R I
Sbjct: 32 DRFVVVPTHADPG---KEIQVDGITTKVIDSYDLYNKNGIKLEITVLKLD-RNEKFRDIR 87
Query: 252 VSVSADLRVGKKIY-AIGHPLGWSFTCTTGVISALDR-EIPGRLIQGVIQIDASVNLGNS 309
+ + A+ G + + + G +++ G
Sbjct: 88 RYIPNNEDDYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYC 147
Query: 310 GGPLLDSSGSLIGVNTFITSGAFSGIGFALPI 341
GG L G ++G I G GF+ +
Sbjct: 148 GGVLY-KIGQVLG----IHVGGNGRDGFSAML 174
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMA---CGIAVNSERVQRHTISVFVGDESGI 57
+P + RPLE GA +V+HSA+K+++ H D+ A G +R++ + G +
Sbjct: 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG---AV 240
Query: 58 LSRIDGVFTRRNCNIESLGV 77
LS D R I++L +
Sbjct: 241 LSPHDAALLMR--GIKTLNL 258
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Score = 37.5 bits (86), Expect = 0.002
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
M +LRPL +GA +V HS +K++ H V+A I
Sbjct: 185 MGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN 224
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1ky9a2 | 249 | Protease Do (DegP, HtrA), catalytic domain {Escher | 100.0 | |
| d1l1ja_ | 228 | Protease Do (DegP, HtrA), catalytic domain {Thermo | 100.0 | |
| d2qf3a1 | 210 | Stress sensor protease DegS, catalytic domain {Esc | 100.0 | |
| d2z9ia2 | 221 | Protease PepD {Mycobacterium tuberculosis [TaxId: | 100.0 | |
| d1lcya2 | 205 | Mitochondrial serine protease HtrA2, catalytic dom | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.94 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.94 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.93 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.93 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.93 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.93 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.92 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.92 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.92 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.92 | |
| d1lvmb_ | 219 | TEV protease (nucleat inclusion protein A, NIA) {T | 99.9 | |
| d1agja_ | 242 | Epidermolytic (exfoliative) toxin A {Staphylococcu | 99.89 | |
| d2qaaa1 | 185 | Protease B {Streptomyces griseus, strain k1 [TaxId | 99.87 | |
| d2o8la1 | 216 | V8 protease {Staphylococcus aureus [TaxId: 1280]} | 99.8 | |
| d1qtfa_ | 246 | Exfoliative toxin B {Staphylococcus aureus [TaxId: | 99.78 | |
| d2sgaa_ | 181 | Protease A {Streptomyces griseus, strain k1 [TaxId | 99.74 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 99.73 | |
| d2bhga1 | 199 | 3C cysteine protease (picornain 3C) {Foot-and-mout | 99.72 | |
| d2h5ca1 | 198 | alpha-Lytic protease {Lysobacter enzymogenes, 495 | 99.71 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 99.71 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 99.69 | |
| d1p3ca_ | 215 | Glutamyl endopeptidase {Bacillus intermedius [TaxI | 99.64 | |
| d1hpga_ | 187 | Glutamic acid-specific protease {Streptomyces gris | 99.59 | |
| d1lo6a_ | 221 | Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1npma_ | 225 | Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} | 99.42 | |
| d1a7sa_ | 225 | Heparin binding protein, HBP {Human (Homo sapiens) | 99.42 | |
| d1j16a_ | 223 | Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101 | 99.42 | |
| d1hj8a_ | 222 | Trypsin(ogen) {North atlantic salmon (Salmo salar) | 99.41 | |
| d1gdna_ | 224 | Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5 | 99.41 | |
| d1eq9a_ | 222 | (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So | 99.41 | |
| d1nn6a_ | 224 | Chymase (mast cell protease I) {Human (Homo sapien | 99.39 | |
| d1fi8a_ | 227 | Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116] | 99.38 | |
| d2z7fe1 | 218 | Elastase {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1fuja_ | 221 | Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96 | 99.37 | |
| d1eufa_ | 224 | Duodenase {Cow (Bos taurus) [TaxId: 9913]} | 99.35 | |
| d1t32a1 | 224 | Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1azza_ | 226 | Crab collagenase {Atlantic sand fiddler crab (Uca | 99.34 | |
| g2pka.1 | 232 | Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]} | 99.33 | |
| d1ao5a_ | 237 | Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090] | 99.32 | |
| d1mzaa_ | 240 | Granzyme K {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1fxya_ | 228 | Coagulation factor Xa-trypsin chimera {Synthetic, | 99.32 | |
| d1orfa_ | 232 | Granzyme A {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1autc_ | 240 | Activated protein c (autoprothrombin IIa) {Human ( | 99.3 | |
| d3rp2a_ | 224 | Chymase II (mast cell proteinase II) {Rat (Rattus | 99.29 | |
| d1bioa_ | 228 | Factor D {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1op0a_ | 234 | Venom serine protease {Hundred-pace snake (Agkistr | 99.29 | |
| d1brup_ | 241 | Elastase {Pig (Sus scrofa) [TaxId: 9823]} | 99.27 | |
| d2hlca_ | 230 | HL collagenase {Common cattle grub (Hypoderma line | 99.27 | |
| d1rrka1 | 287 | Factor B {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1tona_ | 235 | Tonin {Rat (Rattus rattus) [TaxId: 10117]} | 99.26 | |
| d1si5h_ | 234 | Hepatocyte growth factor, HGF {Human (Homo sapiens | 99.25 | |
| g1gg6.1 | 238 | (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) | 99.24 | |
| d1hj9a_ | 223 | Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} | 99.24 | |
| d1pytd_ | 251 | (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) | 99.24 | |
| d1z8ga1 | 255 | Hepsin, catalytic domain {Human (Homo sapiens) [Ta | 99.23 | |
| d1ekbb_ | 235 | Enteropeptidase (enterokinase light chain) {Cow (B | 99.23 | |
| d1xx9a_ | 237 | Coagulation factor XI {Human (Homo sapiens) [TaxId | 99.22 | |
| d1fq3a_ | 227 | Granzyme B {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1elta_ | 236 | Elastase {Salmon (Salmo salar) [TaxId: 8030]} | 99.21 | |
| d1elva1 | 259 | Complement C1S protease, catalytic domain {Human ( | 99.19 | |
| g1fiw.1 | 274 | Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]} | 99.19 | |
| d2p3ub1 | 233 | Coagulation factor Xa, protease domain {Human (Hom | 99.18 | |
| d2f91a1 | 237 | Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus | 99.18 | |
| d1rjxb_ | 247 | Plasmin(ogen), catalytic domain {Human (Homo sapie | 99.18 | |
| d1arba_ | 263 | Achromobacter protease {Achromobacter lyticus, str | 99.17 | |
| d1gvza_ | 237 | Prostate specific antigen (PSA kallikrein) {Horse | 99.17 | |
| d1gvkb_ | 240 | Elastase {Pig (Sus scrofa) [TaxId: 9823]} | 99.16 | |
| d2qy0b1 | 240 | Complement C1R protease, catalytic domain {Human ( | 99.15 | |
| d1fona_ | 232 | Procarboxypeptidase A-S6 subunit III (zymogen E) { | 99.15 | |
| d1cqqa_ | 180 | 3C cysteine protease (picornain 3C) {Human rhinovi | 99.14 | |
| d1sgfa_ | 228 | 7S NGF protease subunits {Mouse (Mus musculus) [Ta | 99.13 | |
| d1rfna_ | 235 | Coagulation factor IXa, protease domain {Human (Ho | 99.13 | |
| d2bz6h1 | 254 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 99.13 | |
| d2fpza1 | 243 | beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| g1h8d.1 | 289 | Thrombin {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| g1gj7.1 | 256 | Urokinase-type plasminogen activator (LMW U-PA), c | 99.11 | |
| g1rtf.1 | 260 | Two-chain tissue plasminogen activator (TC)-T-PA { | 99.11 | |
| d1os8a_ | 223 | Trypsin {Streptomyces griseus, strain k1 [TaxId: 1 | 99.09 | |
| d1eaxa_ | 241 | Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960 | 99.08 | |
| d1q3xa1 | 242 | Mannan-binding lectin serine protease 2 (MASP-2), | 99.04 | |
| d1m9ua_ | 241 | Elastase {Worm (Eisenia fetida) [TaxId: 6396]} | 99.0 | |
| d1l1na_ | 180 | 3C cysteine protease (picornain 3C) {Human poliovi | 98.14 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 97.87 | |
| d1mbma_ | 198 | NSP4 proteinase {Equine arteritis virus, EAV [TaxI | 97.78 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 97.75 | |
| d2h6ma1 | 212 | 3C cysteine protease (picornain 3C) {Human hepatit | 97.62 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 97.51 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.37 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 95.88 | |
| d2fomb1 | 150 | NS3 protease {Dengue virus type 2 [TaxId: 11060]} | 95.29 | |
| d2fp7b1 | 152 | NS3 protease {West nile virus [TaxId: 11082]} | 94.72 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 93.9 | |
| d1ep5a_ | 156 | Viral capsid protein {Venezuelan equine encephalit | 93.23 | |
| d1wyka_ | 152 | Viral capsid protein {Sindbis virus [TaxId: 11034] | 93.06 | |
| d1vcpa_ | 149 | Viral capsid protein {Semliki forest virus [TaxId: | 92.45 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 91.93 |
| >d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease Do (DegP, HtrA), catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-36 Score=271.19 Aligned_cols=202 Identities=38% Similarity=0.588 Sum_probs=171.2
Q ss_pred hHHHhhhcCCCeeEEEEeeeeecC-----------Cccc-----------------------------ccccceEEEEEE
Q 018198 154 ETIRIFEENISSVVWIGNLGIRED-----------QSET-----------------------------EFLRGSGAGFLW 193 (359)
Q Consensus 154 ~~~~~~~~~~~svV~I~~~~~~~~-----------~~~~-----------------------------~~~~~~GsGfii 193 (359)
++.++++++.||||.|.+...... .+.. ....+.||||+|
T Consensus 4 s~a~~ve~v~PaVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GSG~iI 83 (249)
T d1ky9a2 4 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII 83 (249)
T ss_dssp CSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEEEE
T ss_pred ChHHHHHHhCCceEEEEEEEEEeecCCcCcchhhhccccCCcccccccccccccccccccccccccccccccccccEEEE
Confidence 456899999999999987543210 0000 112468999999
Q ss_pred eCC-CEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCC
Q 018198 194 DQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLG 272 (359)
Q Consensus 194 ~~~-g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~ 272 (359)
+++ ||||||+||+.+...+.+.+.+++.+.++++..|+..|+|+|+++... .+++++|+++..+++|++|+++|||++
T Consensus 84 ~~~~g~IlTn~HVv~~~~~~~v~~~~~~~~~a~~~~~d~~~dlavl~i~~~~-~~~~~~l~~~~~~~~G~~v~aiG~P~g 162 (249)
T d1ky9a2 84 DADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK-NLTAIKMADSDALRVGDYTVAIGNPFG 162 (249)
T ss_dssp ETTTTEEEEEHHHHTTEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCC-SCCCCCBCCGGGCCTTCEEEEEECTTS
T ss_pred eccCceEEeeccccccceeeeeeecccccccceeeEeccchhhceeeecccc-cceEEEcCCcCcCCcCCEEEEEecccc
Confidence 875 899999999999999999999999999999999999999999998743 588999998889999999999999999
Q ss_pred CCCceeEeEEeeeecccC-CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC--CCcceeEEEEehHHHHHHHH
Q 018198 273 WSFTCTTGVISALDREIP-GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS--GAFSGIGFALPIDTVRGIVD 349 (359)
Q Consensus 273 ~~~~~~~G~vs~~~~~~~-~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~--~~~~~~~~aip~~~i~~~l~ 349 (359)
...+++.+.++...+... .....++|++|+.+.+|+|||||||.+|+||||+++... +...+++||||++.++++++
T Consensus 163 ~~~tvt~~~~~~~~~~~~~~~~~~~~iqtda~i~~GnSGGPl~n~~G~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~ 242 (249)
T d1ky9a2 163 LGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTS 242 (249)
T ss_dssp SSCEEEEEEEEEESSCC-----CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHH
T ss_pred cCCceeecceeecccccccCccccceEEEeeeecCCCCCceEECCCCEEEEEEEEEeccCCCcccEEEEEEHHHHHHHHH
Confidence 999999999988876643 334457899999999999999999999999999999873 34568999999999999999
Q ss_pred HHHhcCc
Q 018198 350 QLVKFSR 356 (359)
Q Consensus 350 ~l~~~g~ 356 (359)
+|+++||
T Consensus 243 ~l~~~G~ 249 (249)
T d1ky9a2 243 QMVEYGQ 249 (249)
T ss_dssp HHHHHSS
T ss_pred HHHHhCc
Confidence 9999986
|
| >d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease Do (DegP, HtrA), catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-35 Score=262.10 Aligned_cols=201 Identities=37% Similarity=0.626 Sum_probs=169.5
Q ss_pred hhhHHHhhhcCCCeeEEEEeeeeecCCccc-------------------ccccceEEEEEEeCCCEEEecccccCCCCeE
Q 018198 152 ELETIRIFEENISSVVWIGNLGIREDQSET-------------------EFLRGSGAGFLWDQDGHIVTNYHVICGASTV 212 (359)
Q Consensus 152 ~~~~~~~~~~~~~svV~I~~~~~~~~~~~~-------------------~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~ 212 (359)
+.++.++++++.||||+|.+.......+.. ....+.||||+|+++||||||+||+.+...+
T Consensus 3 ~~~~~~~v~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GSGfiI~~~G~IlTn~HVv~~~~~~ 82 (228)
T d1l1ja_ 3 ESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNI 82 (228)
T ss_dssp SCHHHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHSSCSSC
T ss_pred ccHHHHHHHHhCCcEEEEEEEEEEecCCCCchhhHhhhhhccccCCccccccccceEEEEeecCceEEeecccccccccc
Confidence 346788999999999999987543221110 1224689999999999999999999999999
Q ss_pred EEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC--
Q 018198 213 KVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-- 290 (359)
Q Consensus 213 ~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-- 290 (359)
.+.+.+++.+.+++++.++..|+|+|+++.....+++++|+++..+++|++|+++|||.+...+...+.++...+...
T Consensus 83 ~v~~~~~~~~~a~v~~~~~~~dlall~v~~~~~~~~~l~l~~s~~~~~G~~V~aiG~P~g~~~~~~~~~~~~~~~~~~~~ 162 (228)
T d1l1ja_ 83 TVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKP 162 (228)
T ss_dssp EEECTTSCEEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEEEEEECTTSSSCEEEEEEEEEEEEEEECT
T ss_pred eEEeecceeEeEEEeeecccccceeeEeecCCCCCceEEccCccccccCCcEEEEECCCCCCCceEeeeeeccccccccc
Confidence 999999999999999999999999999987666789999988888999999999999999888888888777765433
Q ss_pred --CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec-CCCcceeEEEEehHHHHHHHHHHH
Q 018198 291 --GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 --~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~-~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
......++++|+++.+|+|||||||.+|+||||+++.. .....+++||||++.++++|++|+
T Consensus 163 ~~~~~~~~~~~~da~i~~G~SGGPl~n~~G~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~ 227 (228)
T d1l1ja_ 163 DGSGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL 227 (228)
T ss_dssp TSSCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred cCcCcccceeEEecccCCCCCCCcEECCCCEEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence 22334678999999999999999999999999998876 334467999999999999999985
|
| >d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Stress sensor protease DegS, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-34 Score=252.37 Aligned_cols=200 Identities=36% Similarity=0.503 Sum_probs=161.6
Q ss_pred HHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCC
Q 018198 155 TIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVND 234 (359)
Q Consensus 155 ~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~D 234 (359)
..+.++++.||||.|.....+.+........+.||||+|+++|+||||+|||.+..++.|.+.+++.+.++++..|+..|
T Consensus 5 ~~~~i~~~~~sVV~I~~~~~~~~~~~~~~~~s~GSGfvi~~~G~IlTn~HVV~~~~~i~v~~~~~~~~~~~~~~~~~~~D 84 (210)
T d2qf3a1 5 YNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTD 84 (210)
T ss_dssp CHHHHHHHGGGEEEEEEEEC----CCSCEEEEEEEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEEECEEEEEETTTT
T ss_pred HHHHHHHhCCceEEEEEEEeccCCCCccccccceEEEEEECCceEEechhhcccccccccccccccceeeEEeccccccc
Confidence 44568999999999998754433332233467899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC-CcccccEEEEcccCCCCCcccee
Q 018198 235 LAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-GRLIQGVIQIDASVNLGNSGGPL 313 (359)
Q Consensus 235 lAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-~~~~~~~i~~~~~~~~G~SGgPl 313 (359)
+|+|++..+. ..++..+..+..+..|++|+++|||.+.......+.+....+... ......++++++.+.+|+|||||
T Consensus 85 lall~~~~~~-~~~~~~~~~~~~~~~g~~v~~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~i~~G~SGGPv 163 (210)
T d2qf3a1 85 LAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGAL 163 (210)
T ss_dssp EEEEECCCSS-CCCCCCCCTTCCCCTTBEEEEEECGGGSSSEEEEEEEEESCC---------CCEEECSCCCTTCTTCEE
T ss_pred hhheeccccc-cccccccccccccccceEEEEeccccccccccccccceeeeeeeeccccceeEEEEeeeEEeccCCCce
Confidence 9999998754 355666767778999999999999998888888887777654322 22334679999999999999999
Q ss_pred ecCCCeEEEEEeeecCC-----CcceeEEEEehHHHHHHHHHHHhcC
Q 018198 314 LDSSGSLIGVNTFITSG-----AFSGIGFALPIDTVRGIVDQLVKFS 355 (359)
Q Consensus 314 ~~~~G~viGi~~~~~~~-----~~~~~~~aip~~~i~~~l~~l~~~g 355 (359)
||.+|+||||+++.... ..++++|+||++.+++++++|+++|
T Consensus 164 ~n~~G~vVGI~~~~~~~~~~~~~~~~i~faIP~~~v~~~l~~l~~~G 210 (210)
T d2qf3a1 164 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 210 (210)
T ss_dssp EETTCCEEEEEEEEC--------CCSCEEEEEHHHHHHHHHHHHHHS
T ss_pred EeecCEEEEEEEEEeeccCCCccccceEEEEEHHHHHHHHHHHHhcC
Confidence 99999999999987632 2356899999999999999999987
|
| >d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease PepD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7e-34 Score=251.07 Aligned_cols=193 Identities=38% Similarity=0.614 Sum_probs=157.7
Q ss_pred HHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCC---------CCeEEEEecCCcEEEEE
Q 018198 155 TIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICG---------ASTVKVSFSDQSTFYAQ 225 (359)
Q Consensus 155 ~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~---------~~~~~v~~~~g~~~~~~ 225 (359)
+.++++++.+|||+|+....+. .+.||||+|+++|+||||+|||.+ ..++.|.+.|++.++++
T Consensus 3 v~~v~~~~~~svV~I~~~~~~~--------~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~dg~~~~a~ 74 (221)
T d2z9ia2 3 VEQVAAKVVPSVVMLETDLGRQ--------SEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFT 74 (221)
T ss_dssp HHHHHHHHGGGEEEEEEEC------------CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEETTSCEECCE
T ss_pred HHHHHHHhCCcEEEEEeccCCc--------CcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcCCceeeeee
Confidence 4678899999999998755332 347999999999999999999853 34688999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC-------CcccccEE
Q 018198 226 VVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP-------GRLIQGVI 298 (359)
Q Consensus 226 v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~-------~~~~~~~i 298 (359)
++..|+..|||||+++.... .++..+.+...+++|+.++++|||.+.......|.+....+... .......+
T Consensus 75 vi~~d~~~DlAll~~~~~~~-~~~~~~~~~~~~~~g~~v~~~g~p~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i 153 (221)
T d2z9ia2 75 VVGADPTSDIAVVRVQGVSG-LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAI 153 (221)
T ss_dssp EEEEETTTTEEEEECCSCCS-CCCCEECCGGGCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEEEC-------CCEEEEE
T ss_pred eEeeccccceeeeeeccccc-ceeeccccccccccCceeeeeeccCCCcccccccceeeccccccccccccccccccceE
Confidence 99999999999999987553 44445556678899999999999999888888888877654322 22234578
Q ss_pred EEcccCCCCCccceeecCCCeEEEEEeeecC---------CCcceeEEEEehHHHHHHHHHHHhcCc
Q 018198 299 QIDASVNLGNSGGPLLDSSGSLIGVNTFITS---------GAFSGIGFALPIDTVRGIVDQLVKFSR 356 (359)
Q Consensus 299 ~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~---------~~~~~~~~aip~~~i~~~l~~l~~~g~ 356 (359)
++++++.+|+|||||||.+|+||||+++... ....+++|+||++.+++++++|+++||
T Consensus 154 ~~~~~i~~G~SGGPv~n~~G~vVGI~~~~~~~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~~~G~ 220 (221)
T d2z9ia2 154 QTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK 220 (221)
T ss_dssp EECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSS
T ss_pred EEeecccCCCCCCccCcCCCEEEEEEEEEecccccccccccCccCeEEEEEHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988752 223458999999999999999999997
|
| >d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Mitochondrial serine protease HtrA2, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=246.59 Aligned_cols=195 Identities=33% Similarity=0.505 Sum_probs=160.5
Q ss_pred chhhhhHHHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEE
Q 018198 149 QMDELETIRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVG 228 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~ 228 (359)
+.....+.++++++.+|||+|.+...... .+...+.+.||||+|+++|+||||+||++++.++.|.+.+|+.++++++.
T Consensus 6 ~~~~~~~~~~~e~~~~sVV~I~~~~~~~~-~~~~~~~~~GSGf~i~~~G~IlT~~HVv~~~~~i~V~~~~g~~~~a~vv~ 84 (205)
T d1lcya2 6 RSQYNFIADVVEKTAPAVVYIEILDRHPF-LGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTA 84 (205)
T ss_dssp HHHSCHHHHHHHHHGGGEEEEEEEEEETT-TTEEEEEEEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEE
T ss_pred cccccHHHHHHHHhcCcEEEEEEEEcCcC-CCCcCCCcceEEEEEECCCeEEEechhhhhhhhccccccccccccceeee
Confidence 33455778899999999999998864422 22233456899999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC----CcccccEEEEcccC
Q 018198 229 HDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQIDASV 304 (359)
Q Consensus 229 ~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~----~~~~~~~i~~~~~~ 304 (359)
.|+..|+|+++++... .++++++.+..++..|+.++++|||.+.......|.+....+... .......+++++.+
T Consensus 85 ~d~~~dlall~~~~~~-~~~~l~l~~~~~~~~G~~v~~iG~P~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (205)
T d1lcya2 85 VDPVADIATLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAI 163 (205)
T ss_dssp EETTTTEEEEECCCSS-CCCCCCBCCGGGCCTTCEEEECCCTTSSSSCCEEEEBCSCSCC---------CCCCEEESSCC
T ss_pred eecceeeEEEEecCCC-CCcEEEccccccCCCCCEEEEEECCcccCceEeeeEEEeccccccccCCCCccceEEEEeeee
Confidence 9999999999998643 578888877777899999999999998877777776665543322 11223578999999
Q ss_pred CCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHH
Q 018198 305 NLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIV 348 (359)
Q Consensus 305 ~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l 348 (359)
.+|+|||||||.+|+||||+++... .+++||||++.++++|
T Consensus 164 ~~G~SGGPv~d~~G~vVGI~s~~~~---~g~~~aip~~~l~~~L 204 (205)
T d1lcya2 164 DFGNAGGPLVNLDGEVIGVNTMKVT---AGISFAIPSDRLREFL 204 (205)
T ss_dssp STTTTTSEEEETTSCEEEEEEEEEE---TTEEEEEEHHHHHHHT
T ss_pred CCCCCcCcEECCCCEEEEEEeeEcc---CCeEEEEEHHHHHHhh
Confidence 9999999999999999999988753 4689999999999886
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.94 E-value=1.4e-28 Score=233.01 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=99.9
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||+|||||||||+|||++||||+|+|+++++++.+....+..+++.+|++++|++|||++||++||.+||
T Consensus 185 atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~lRm--- 261 (394)
T d1e5ea_ 185 CSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRM--- 261 (394)
T ss_dssp TCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHH---
T ss_pred cCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHHHHH---
Confidence 68999999999999999999999999999999999998776643223345667899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||++++.|.+|+|. ..+++..++.
T Consensus 262 --~r~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~ 298 (394)
T d1e5ea_ 262 --KAE---------SENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIA 298 (394)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHH
T ss_pred --HHH---------HHHHHHHHHHHhhcCCccEEeCCCcccccchhhh
Confidence 999 99999999999999999999997 3566665553
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.94 E-value=1e-28 Score=233.40 Aligned_cols=114 Identities=25% Similarity=0.313 Sum_probs=101.3
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+|+++||||||||+|||++||||+|+|+++++++.+.+.++..+++.+|++++|++|||++||++||.+||
T Consensus 188 atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~lRm--- 264 (397)
T d1y4ia1 188 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRM--- 264 (397)
T ss_dssp TCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHHHH---
T ss_pred cCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHHHH---
Confidence 68999999999999999999999999999999999999887643223345566799999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
++| ++++.+|++||++++.|.+|+|. .++++..++..
T Consensus 265 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~ 302 (397)
T d1y4ia1 265 --ERH---------CENALKIARFLEGHPSITRVYYPGLSSHPQYELGQ 302 (397)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHH
T ss_pred --HHH---------HHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccc
Confidence 999 99999999999999999999997 45677766543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.4e-28 Score=231.94 Aligned_cols=112 Identities=25% Similarity=0.306 Sum_probs=102.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||++||||||||+|||++||||+++|+++++++.+++ .+....+++|++++|++||++.||++||.+||
T Consensus 175 atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~-~~~~~~~~~G~~~~p~~a~ll~rgL~TL~lRm--- 250 (384)
T d1cs1a_ 175 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT-ELAWWANNIGVTGGAFDSYLLLRGLRTLVPRM--- 250 (384)
T ss_dssp TCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHH---
T ss_pred cCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhh-hhhhhhhhhhhccccccHHHHhhccchhHHHH---
Confidence 58999999999999999999999999999999999998877654 45677889999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||++++.|.+|+|. ..+++..++.
T Consensus 251 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~ 287 (384)
T d1cs1a_ 251 --ELA---------QRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIA 287 (384)
T ss_dssp --HHH---------HHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHH
T ss_pred --HHH---------HHHHHHHHHhcccCCceeeeeeccccchhHHHHH
Confidence 999 99999999999999999999997 4667766654
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=2.4e-28 Score=230.70 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++||||+||||||+||+|||++||||+++|+++++.+.+.+.++..+++.+|++++|++||+++||++||.+||
T Consensus 184 atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~lRm--- 260 (392)
T d1gc0a_ 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRM--- 260 (392)
T ss_dssp THHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHH---
T ss_pred cCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHHHHH---
Confidence 58999999999999999999999999999999999999877644233445667899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
+++ ++++++|++||++++.|.+|+|. ..+++..++.-
T Consensus 261 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~ 298 (392)
T d1gc0a_ 261 --DRH---------CANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 298 (392)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEEEC------------
T ss_pred --HHH---------HHHHHHHHHHHHhCCCccEEeeccccCCccccccc
Confidence 999 99999999999999999999997 46777777643
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=6.8e-28 Score=229.31 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceee------------------------------EEEEee
Q 018198 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRH------------------------------TISVFV 51 (359)
Q Consensus 2 ~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~------------------------------~l~~~~ 51 (359)
||++|+||++||||||||+|||++||||+|+|+|+++++..++. .+....
T Consensus 186 tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (421)
T d2ctza1 186 GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGL 265 (421)
T ss_dssp GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHH
T ss_pred cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999887654320 011233
Q ss_pred cCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 52 GDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 52 ~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++|++++|++|||++||++||++|| ++| ++++.+|++||++++.|.+|+|. ..+++..+++
T Consensus 266 ~~~G~~~sP~~a~l~~rgl~TL~lRm-----~~~---------~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a 328 (421)
T d2ctza1 266 RDQGQALGPFEAWVVLLGMETLSLRA-----ERH---------VENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA 328 (421)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHHHHH-----HHH---------HHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred HhccCCCCHHHHHHHhcCCcchhhHH-----HHH---------HHHHHHHHhhhccCCCeeEEecCCcCCCccHHHH
Confidence 46899999999999999999999999 999 99999999999999999999997 4667777653
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.93 E-value=7e-28 Score=227.86 Aligned_cols=112 Identities=23% Similarity=0.243 Sum_probs=100.8
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||++|||||+||+|||++||||+|+|+++.+.+.+. .++.+.+.+|++++|++||+++||++||.+||
T Consensus 193 atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~--~~~~~~~~~G~~l~p~~a~ll~rgl~TL~lRm--- 267 (398)
T d1qgna_ 193 ATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVS--EIRNLHHILGGALNPNAAYLIIRGMKTLHLRV--- 267 (398)
T ss_dssp TCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHH---
T ss_pred eccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhh--hhhhhcccCCCcCCHHHHHHHHhcchHHHHHH---
Confidence 5899999999999999999999999999999999887766553 35567889999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCccc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPFF 128 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~l 128 (359)
++| ++++.+|++||++|+.|.+|+|. ..+++..++..
T Consensus 268 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~ 305 (398)
T d1qgna_ 268 --QQQ---------NSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAK 305 (398)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHH
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhh
Confidence 999 99999999999999999999997 45667776543
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=1.3e-27 Score=225.08 Aligned_cols=112 Identities=34% Similarity=0.454 Sum_probs=102.4
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||++||||||||+|||++||||+|+|+++.+.+.+++ .+....+.+|++++|++||++.||++||.+||
T Consensus 173 atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~-~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~lRm--- 248 (380)
T d1ibja_ 173 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK-EVYFLQNSEGSGLAPFDCWLCLRGIKTMALRI--- 248 (380)
T ss_dssp TCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH-HHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHH---
T ss_pred cccccccccccCCCEEEecccceeccccCccccccccchhhHHH-HHHhhccccCCcCCHHHHHHHHhcchhhhhhH---
Confidence 58999999999999999999999999999999999998877665 55677889999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
+++ ++++.+|++||++++.|.+|+|. .++++..+++
T Consensus 249 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a 285 (380)
T d1ibja_ 249 --EKQ---------QENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH 285 (380)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHH
T ss_pred --HHH---------HHHHHHHHHHHHhCCCeeEEeccccccCcccccc
Confidence 999 99999999999999999999997 3566666654
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-27 Score=224.54 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=100.3
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||++|||||+||+|||++||||+|+|+++++++.+++ +....+.+|++++|++||++.||++||.+||
T Consensus 185 atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~--~~~~~~~~G~~~~p~~a~ll~rgl~TL~lR~--- 259 (391)
T d1cl1a_ 185 AAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQ--LRENAYLMGQMVDADTAYITSRGLRTLGVRL--- 259 (391)
T ss_dssp TTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHH--HHHHHHHTTCCCCHHHHHHHHHHHTTHHHHH---
T ss_pred cchhhhcccccccceEEeecchhccccccccccceecccccccc--chhhhhcccccCCchhhhhhhccchhHHHHH---
Confidence 58999999999999999999999999999999999988876643 4566778999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++.+|++||++++.|.+|+|. .++++..+++
T Consensus 260 --~~~---------~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~ 296 (391)
T d1cl1a_ 260 --RQH---------HESSLKVAEWLAEHPQVARVNHPALPGSKGHEFW 296 (391)
T ss_dssp --HHH---------HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH
T ss_pred --HHH---------HHHHHHHHHHHHhcccccccccccccchhhHHHH
Confidence 999 99999999999999999999997 3566666554
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.5e-28 Score=228.14 Aligned_cols=112 Identities=29% Similarity=0.389 Sum_probs=100.2
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++||||++||||||||+|||++||||+|+|+|+.+++.+++ .++.+...+|++++|++||++.||++||.+||
T Consensus 182 atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~-~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~lR~--- 257 (393)
T d1n8pa_ 182 LSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYE-RLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRV--- 257 (393)
T ss_dssp THHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH---
T ss_pred cCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHH-HHHHHHhhcCCCCChHHHHHHHhCCcchhhHH---
Confidence 58999999999999999999999999999999999988777654 56677888999999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhh-hceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKL-VNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~-~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++++++|++||+++ +.|.+|+|. ..+++..+++
T Consensus 258 --~~~---------~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a 295 (393)
T d1n8pa_ 258 --RQA---------ALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295 (393)
T ss_dssp --HHH---------HHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHH
T ss_pred --HHH---------HHHHHHHHHHHHhccCcEEEEecccccccccchhh
Confidence 999 99999999999987 789999997 3555655553
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.92 E-value=1.5e-27 Score=221.40 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=100.7
Q ss_pred CCCccccccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeeeEeecc
Q 018198 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGL 80 (359)
Q Consensus 1 ~~p~~~~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~ 80 (359)
+||++|+||++|||||+||+|||++||||+|+|+++.+.+.+++.....+.+.+|++++|++||++.||++||.+||
T Consensus 124 atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm--- 200 (331)
T d1pffa_ 124 ASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV--- 200 (331)
T ss_dssp THHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred cccccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHH---
Confidence 57999999999999999999999999999999999998776654333445667899999999999999999999999
Q ss_pred cCCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec-cCCCCCCCcc
Q 018198 81 NKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK-QSSSSSLEPF 127 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~-~~~~~~~el~ 127 (359)
++| ++|+.+|++||++++.|.+|+|. .++++..++.
T Consensus 201 --~~~---------~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~ 237 (331)
T d1pffa_ 201 --KRA---------AENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIA 237 (331)
T ss_dssp --HHH---------HHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHH
T ss_pred --HHH---------HHHHHHHHHhhhhCCcEEeeccccccCccHHHHH
Confidence 999 99999999999999999999997 3667776653
|
| >d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: TEV protease (nucleat inclusion protein A, NIA) species: Tobacco etch virus, TEV [TaxId: 12227]
Probab=99.90 E-value=4e-23 Score=180.72 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=127.0
Q ss_pred hhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC-eEEEEecCCcEEEEE----EEEEcCCC
Q 018198 159 FEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS-TVKVSFSDQSTFYAQ----VVGHDQVN 233 (359)
Q Consensus 159 ~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~-~~~v~~~~g~~~~~~----v~~~d~~~ 233 (359)
++.+.++||.|..... .+.||||.|..++|||||+||+++.. .+.+.+.+|...... .+..++..
T Consensus 9 y~~i~~~v~~i~~~s~----------g~~gsg~gi~~~~~IiTN~HVv~~~~~~~~i~~~~G~~~~~~~~~i~i~~~~~~ 78 (219)
T d1lvmb_ 9 YNPISSTICHLTNESD----------GHTTSLYGIGFGPFIITNKHLFRRNNGTLLVQSLHGVFKVKNTTTLQQHLIDGR 78 (219)
T ss_dssp CHHHHTTEEEEEEEET----------TEEEEEEEEEETTEEEECGGGGSCCSEEEEEEETTEEEEESCGGGSEEEECTTS
T ss_pred cccccccEEEEEEecC----------CCcEEEEEEEeCCEEEECccccccCCceEEEEEcCCcEeecceEEEEeeecCCc
Confidence 4556678888887542 34788888888899999999998765 677888777543222 25667889
Q ss_pred CEEEEEEcCCCCCccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCcccee
Q 018198 234 DLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPL 313 (359)
Q Consensus 234 DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl 313 (359)
|||+|+++... .|..++..+..++.|++|+++|+|+......+. ++...... ......++++++++.+|+|||||
T Consensus 79 DLaiik~~~~~--~p~~~l~~~~~~~~Ge~V~aiG~p~~~~~~~~~--v~~~~~~~-~~~~~~~~~~~~~t~~GnSGGPl 153 (219)
T d1lvmb_ 79 DMIIIRMPKDF--PPFPQKLKFREPQREERICLVTTNFQTKSMSSM--VSDTSCTF-PSSDGIFWKHWIQTKDGQCGSPL 153 (219)
T ss_dssp SCEEEECCTTS--CCCCSCCCBCCCCTTCEEEEEEECCSCGGGCEE--ECCCEECE-EETTTTEEEECBCCCTTCTTCEE
T ss_pred cEEEEEcCCCC--CCcceecccCCCCcCCEEEEEEccCCCCceEEE--Eeccceee-ccCCCceEEEEEEcCCCCCCCce
Confidence 99999998643 466677777889999999999999865433322 11111111 11123678999999999999999
Q ss_pred ecC-CCeEEEEEeeecCCCcceeEEEEeh-HHHHHHHHHHHh
Q 018198 314 LDS-SGSLIGVNTFITSGAFSGIGFALPI-DTVRGIVDQLVK 353 (359)
Q Consensus 314 ~~~-~G~viGi~~~~~~~~~~~~~~aip~-~~i~~~l~~l~~ 353 (359)
||. +|+||||+++...+. ..+|++|+ +.+.++|.+..+
T Consensus 154 vd~~dG~VVGIhs~~~~~~--~~n~~~~i~~~~~~~l~~~~~ 193 (219)
T d1lvmb_ 154 VSTRDGFIVGIHSASNFTN--TNNYFTSVPKNFMELLTNQEA 193 (219)
T ss_dssp EETTTCCEEEEEEEEETTS--SSEEEEECCTTHHHHHHCGGG
T ss_pred EEcCCCEEEEEEEeeeccc--ceEEEEecCHHHHHHHhhccc
Confidence 996 799999999986543 45666665 335677776544
|
| >d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Epidermolytic (exfoliative) toxin A species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=2.9e-22 Score=178.24 Aligned_cols=171 Identities=21% Similarity=0.313 Sum_probs=119.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEec---C--C------cEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFS---D--Q------STFYAQV 226 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~---~--g------~~~~~~v 226 (359)
..++|++|.... .+.||||+|+++ +||||+|||.+.. .+.+... + + ..+.+..
T Consensus 42 p~~~v~~i~~~g-----------~~~gTG~lI~~~-~ILTa~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (242)
T d1agja_ 42 PYNTIGNVFVKG-----------QTSATGVLIGKN-TVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKE 109 (242)
T ss_dssp TGGGEEEEEETT-----------TEEEEEEECSSS-EEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEE
T ss_pred CcccEEEEEeCC-----------CccEEEEEEeCC-EEEEcccEeccCCCceEEEEEeecceecccceeeeccceEEEEE
Confidence 346888887632 347999999976 9999999996432 2222211 1 1 1233333
Q ss_pred EEE---cCCCCEEEEEEcCCCC------CccceEecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecccCCcccccE
Q 018198 227 VGH---DQVNDLAVLHIDAPNH------ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGV 297 (359)
Q Consensus 227 ~~~---d~~~DlAll~v~~~~~------~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~ 297 (359)
+.. +...|||||+++++.. .++++.|+++..+..|++++++|||.+.............. .....
T Consensus 110 ~~~~~~~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~~~~~~~~~~~~~~~~------~~~~~ 183 (242)
T d1agja_ 110 ILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELT------TLSRG 183 (242)
T ss_dssp EESCTTCTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEEEC------CGGGS
T ss_pred EeeecCCCcCcEEEEEeccccccccccccCcceeecccccccCCcEEEEEEcCCCCccceeEecccccc------ccccc
Confidence 333 3467999999976432 36777888777889999999999998755433222111111 11234
Q ss_pred EEEcccCCCCCccceeecCCCeEEEEEeeec--CCCcceeEEEEeh-HHHHHHHHH
Q 018198 298 IQIDASVNLGNSGGPLLDSSGSLIGVNTFIT--SGAFSGIGFALPI-DTVRGIVDQ 350 (359)
Q Consensus 298 i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~--~~~~~~~~~aip~-~~i~~~l~~ 350 (359)
+++++.+++|+|||||||.+|+||||+++.. .+.....+|++|+ +.+++++++
T Consensus 184 ~~~~~~~~~G~SGgPl~~~~g~vVGI~~~~~~~~~~~~~~~~av~i~~~i~~~i~~ 239 (242)
T d1agja_ 184 LRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINE 239 (242)
T ss_dssp EEEECCCCGGGTTCEEECTTSEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHHH
T ss_pred EEEecccCCccCCCcEECCCCeEEEEEeEeecCCCCccceEEEEeCHHHHHHHHHH
Confidence 7889999999999999999999999999886 2334568999997 578888776
|
| >d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease B species: Streptomyces griseus, strain k1 [TaxId: 1911]
Probab=99.87 E-value=2e-21 Score=165.80 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=124.5
Q ss_pred ceEE-EEEEeCC--CEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCC----CccceEecCCCCC
Q 018198 186 GSGA-GFLWDQD--GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNH----ELRPIHVSVSADL 258 (359)
Q Consensus 186 ~~Gs-Gfii~~~--g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~----~~~~~~l~~~~~~ 258 (359)
+.|| ||.+..+ ++||||+||+++...+.+...++..+.+.+...++..|+||||++.... ..+..++.....+
T Consensus 12 ~~CT~Gf~v~~~~~~~ilTA~Hcv~~~~~~~~~~~~~~~~g~~~~~~~~~~D~All~~~~~~~~~~~~~~~~~v~~~~~~ 91 (185)
T d2qaaa1 12 GRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAANA 91 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTTCCEEESSTTSCSEEEEEEEEECSBSCEEEEEECCSSSCCCSEETTEECCEECCC
T ss_pred CcEeeeEeEEECCccEEEECCCccCCCCEEEEEcCCCeEeeeEEeccCCCCCeEEEEeccCCcccccccCceeccCCCcC
Confidence 4677 9988644 4899999999999988888888888888888899999999999986432 2344555556778
Q ss_pred CCCCEEEEEecCCCCCCceeEeEEeeeecccC---CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec-CCCcce
Q 018198 259 RVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT-SGAFSG 334 (359)
Q Consensus 259 ~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~---~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~-~~~~~~ 334 (359)
.+|++++..|+|.+ .+.|.|...+.... +.....++++++.+.+||||||||| .++++||++... .....+
T Consensus 92 ~~G~~v~~~G~~tg----~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~GdSGGPv~~-~~~~vGi~~~g~~~~~~~~ 166 (185)
T d2qaaa1 92 TVGMAVTRRGSTTG----THSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGG 166 (185)
T ss_dssp CTTCEEEEEETTTE----EEEEEEEEEEEEEECSTTCEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTTEE
T ss_pred CCCCEEEEccCCCC----cccceeEeeEEEEEcCCCCeeeeEEEEeeeecCCcccceeEE-CCEEEEEEEEeecCCCCCc
Confidence 89999999999876 56677776654322 3345578899999999999999998 689999999876 334467
Q ss_pred eEEEEehHHHHHHH
Q 018198 335 IGFALPIDTVRGIV 348 (359)
Q Consensus 335 ~~~aip~~~i~~~l 348 (359)
.+|++|++.+.+.+
T Consensus 167 ~~~~~Pi~~~l~~~ 180 (185)
T d2qaaa1 167 TTFFQPVTEALSAY 180 (185)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred eEEEEEHHHHHHHh
Confidence 89999988776543
|
| >d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: V8 protease species: Staphylococcus aureus [TaxId: 1280]
Probab=99.80 E-value=7.6e-19 Score=152.79 Aligned_cols=175 Identities=21% Similarity=0.256 Sum_probs=122.6
Q ss_pred hcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCe----EEEEe--------cCCcEEEEEEE
Q 018198 160 EENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAST----VKVSF--------SDQSTFYAQVV 227 (359)
Q Consensus 160 ~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~----~~v~~--------~~g~~~~~~v~ 227 (359)
+...++|++|...... ..+.||||+|+++ +||||+||+.+... +.+.. .+.........
T Consensus 16 ~~p~~~v~~i~~~~~~--------~~~~cTG~lI~~~-~vLTAaHcv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
T d2o8la1 16 NGHYAPVTYIQVEAPT--------GTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT 86 (216)
T ss_dssp SGGGTTEEEEEEEETT--------EEEEEEEEEEETT-EEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEE
T ss_pred cCchheEEEEEEEcCC--------CCEEEEEEEEeCC-EEEEeeeeeccCCCceEEEEEEecccccceeeeeeEEeeeee
Confidence 3445688999876532 2357999999976 99999999976542 22222 12234445666
Q ss_pred EEcCCCCEEEEEEcCCCC------CccceEecCCCCCCCCCEEEEEecCCCCCCc---eeEeEEeeeecccCCcccccEE
Q 018198 228 GHDQVNDLAVLHIDAPNH------ELRPIHVSVSADLRVGKKIYAIGHPLGWSFT---CTTGVISALDREIPGRLIQGVI 298 (359)
Q Consensus 228 ~~d~~~DlAll~v~~~~~------~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~---~~~G~vs~~~~~~~~~~~~~~i 298 (359)
......|+|+|+++.... ...+...........|+.+.++|||.+.... ...+.+...+. ..+
T Consensus 87 ~~~~~~D~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~l 158 (216)
T d2o8la1 87 KYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLKG--------EAM 158 (216)
T ss_dssp ECSSSSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET--------TEE
T ss_pred ccccCCceEEEEecccccccccccceeeeeccccccccCCceeEEEEccCCCceeeEEEEeeEEEEccC--------CeE
Confidence 777899999999976432 1223334445566789999999999775543 23455544322 467
Q ss_pred EEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehH-HHHHHHHHHHhc
Q 018198 299 QIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPID-TVRGIVDQLVKF 354 (359)
Q Consensus 299 ~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~-~i~~~l~~l~~~ 354 (359)
++++.+++|+|||||||.+|+||||++++..+ ..+.++++. .++.++++-++.
T Consensus 159 ~~~~~~~~G~SGgPv~~~~g~vVGI~s~g~~~---~~~~~v~~~~~~~~~i~~~i~~ 212 (216)
T d2o8la1 159 QYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN---EFNGAVFINENVRNFLKQNIED 212 (216)
T ss_dssp EESCCCCTTCTTCEEECTTSCEEEEEEEEETT---TEEEEEECCHHHHHHHHHHCTT
T ss_pred EEecCcCCCCCCCcEECCCCEEEEEEeeecCC---CCcceEecCHHHHHHHHHhhhh
Confidence 88999999999999999999999999987643 346677755 688888876654
|
| >d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Exfoliative toxin B species: Staphylococcus aureus [TaxId: 1280]
Probab=99.78 E-value=1.9e-19 Score=160.25 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=108.1
Q ss_pred HHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEecC------------C
Q 018198 156 IRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFSD------------Q 219 (359)
Q Consensus 156 ~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~~------------g 219 (359)
.+..+....+|++|.... .+.||||+|+++ +||||+||+.+.. .+.+.+.. .
T Consensus 29 ~d~~~~p~~~v~~i~~~g-----------~~~GTGflI~~~-~ILTa~HVv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (246)
T d1qtfa_ 29 TDNARSPYNSVGTVFVKG-----------STLATGVLIGKN-TIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPY 96 (246)
T ss_dssp SCCSSTTGGGEEEEEETT-----------TEEEEEEEEETT-EEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTT
T ss_pred cccccCccccEEEEEeCC-----------CceEEEEEEeCC-eEEEchhecccCCcceEEEEEecCCcceeeeeeecCCC
Confidence 334455667889996532 357999999975 9999999996543 34444322 2
Q ss_pred cEEEEEEEEE---cCCCCEEEEEEcCCCC------CccceEecCCCCCCCCCEEEEEecCCCCCCcee-EeEEeeeeccc
Q 018198 220 STFYAQVVGH---DQVNDLAVLHIDAPNH------ELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCT-TGVISALDREI 289 (359)
Q Consensus 220 ~~~~~~v~~~---d~~~DlAll~v~~~~~------~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~~~~-~G~vs~~~~~~ 289 (359)
..+.+..+.. +...|+|+|+++.... .++++.+.+...+..|+.++++|||.+...... ......
T Consensus 97 ~~~~~~~~~~~~~~~~~DiAll~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~~~~~~~~~~~~----- 171 (246)
T d1qtfa_ 97 GKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEM----- 171 (246)
T ss_dssp CCEEEEEEESCTTCTTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEEE-----
T ss_pred ceEEEEEEEecCCcccCceEEEEeccccccccccccCceeeccccccccCCCEEEEEeCCCCCCcceeeccceEe-----
Confidence 3345554444 3567999999976432 244555555667889999999999986543221 111111
Q ss_pred CCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEeh
Q 018198 290 PGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPI 341 (359)
Q Consensus 290 ~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~ 341 (359)
...+++++.+.+|+|||||||.+|+||||++.+... .+..+.+++
T Consensus 172 -----~~~~~~~~~~~~G~SGgPv~n~~G~vVGI~~~g~~~--~~~~~~~~~ 216 (246)
T d1qtfa_ 172 -----FNDSQYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQ--HNLPIGVFF 216 (246)
T ss_dssp -----SSSSBEESCCCGGGTTCEEECTTCCEEEEEEEEETT--TTEEEEEET
T ss_pred -----CCCceEEeeccCCCCCCcEECCCCeEEEEEecccCC--CCCccceEe
Confidence 122456788899999999999999999999987633 344445554
|
| >d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Protease A species: Streptomyces griseus, strain k1 [TaxId: 1911]
Probab=99.74 E-value=5.2e-18 Score=143.75 Aligned_cols=149 Identities=18% Similarity=0.309 Sum_probs=107.6
Q ss_pred eEE-EEEEeCCC--EEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCC--------ccceEecCC
Q 018198 187 SGA-GFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE--------LRPIHVSVS 255 (359)
Q Consensus 187 ~Gs-Gfii~~~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~--------~~~~~l~~~ 255 (359)
.|| ||.+..++ ++|||+||+.....+.+...++.+ .+..|+|+++++.+... .+...+...
T Consensus 13 ~ct~Gf~v~~~~~~~vlTA~Hc~~~~~~~~vg~~~g~~--------~p~~D~Ali~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (181)
T d2sgaa_ 13 RCSLGFNVSVNGVAHALTAGHCTNISASWSIGTRTGTS--------FPNNDYGIIRHSNPAAADGRVYLYNGSYQDITTA 84 (181)
T ss_dssp EEECCEEEEETTEEEEEECHHHHTTCSEETTEEEEEEE--------CSBSCEEEEEESCGGGCCCEEECSSSCEEECCEE
T ss_pred cEeeeEeEEECCCCEEEEChhhCCCCCeEEEEeccCcc--------CCccceEEEEecCcccccceeecCCCceeeecCC
Confidence 466 88886554 899999999988877665444432 46789999999864321 122333334
Q ss_pred CCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC---CcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-CC
Q 018198 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-GA 331 (359)
Q Consensus 256 ~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~---~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~~ 331 (359)
..+.+|+.++.+|+|.+ .+.|.+...+.... .......++++..+.+|||||||++ +++++||++++.. ..
T Consensus 85 ~~~~~G~~v~~~G~~~g----~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~GdSGGPv~~-~~~~vGi~sgg~~~~~ 159 (181)
T d2sgaa_ 85 GNAFVGQAVQRSGSTTG----LRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLFA-GSTALGLTSGGSGNCR 159 (181)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEECGGGCEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETT
T ss_pred CcCCCCCEEEEeCCCCc----ccccceeeecceEEecCCCeEeeeEEEeeeccCCCcCCeeEE-CCEEEEEEEEecCCCC
Confidence 56788999999999865 45666666654332 2234567889999999999999997 6899999999863 33
Q ss_pred cceeEEEEehHHHHHHH
Q 018198 332 FSGIGFALPIDTVRGIV 348 (359)
Q Consensus 332 ~~~~~~aip~~~i~~~l 348 (359)
..+.+|++|++.+...+
T Consensus 160 ~~~~~~~~pv~~~l~~~ 176 (181)
T d2sgaa_ 160 TGGTTFYQPVTEALSAY 176 (181)
T ss_dssp TEEEEEEEEHHHHHHHH
T ss_pred CCceEEEEEHHHHHHHh
Confidence 45689999988776544
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=99.73 E-value=5.1e-18 Score=120.73 Aligned_cols=75 Identities=40% Similarity=0.603 Sum_probs=71.4
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
|+|++..+++|..|+|+++.+.|.+||||+.||.+++++ ++.+||||++.++++.++||.+||+|++||.+|.++
T Consensus 1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dl 76 (77)
T d2pc6a2 1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 76 (77)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEEC
Confidence 467999999999999999999999999999999999877 788999999999999999999999999999999985
|
| >d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Foot-and-mouth disease virus FMDV [TaxId: 12110]
Probab=99.72 E-value=3.8e-18 Score=146.77 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=115.7
Q ss_pred ceEEEEEEeCCCEEEecccccCCCC-eEEEEe---c--C--CcEEEEEEEEEcCCCCEEEEEEcCCCCCccce--EecCC
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGAS-TVKVSF---S--D--QSTFYAQVVGHDQVNDLAVLHIDAPNHELRPI--HVSVS 255 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~-~~~v~~---~--~--g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~--~l~~~ 255 (359)
..|+|+.|..+ ++||++|++.... .+.+.. . + ...+.++++..|+..|||+|+++... .++.. .+.++
T Consensus 23 ~~g~gl~v~g~-~~l~~~H~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~d~~~Dlall~l~~~~-~~~~~~~~~~~~ 100 (199)
T d2bhga1 23 AICCATGVFGT-AYLVPRHLFAEKYDKIMLDGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLHRGN-KVRDITKHFRDT 100 (199)
T ss_dssp EEEEEEEEEBT-EEEEEHHHHTSCCSEEEETTEEECGGGEEEECCEECCSSSCEECSEEEEEESSSC-CBCCCGGGBCSS
T ss_pred EEeEEEEEECC-EEEECCcEeecCCCEEEEeeeEEEEEeccceEEEEEEEecCCCccEEEEEcCCCC-cCCccccccccc
Confidence 47999999876 8999999997543 332211 1 1 11234556667888999999997643 22222 34556
Q ss_pred CCCCCCCEEEEEecCCCCCCceeEeEEeeeecccC---CcccccEEEEcccCCCCCccceeecC---CCeEEEEEeeecC
Q 018198 256 ADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP---GRLIQGVIQIDASVNLGNSGGPLLDS---SGSLIGVNTFITS 329 (359)
Q Consensus 256 ~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~~---~~~~~~~i~~~~~~~~G~SGgPl~~~---~G~viGi~~~~~~ 329 (359)
..+..|+.++++|+|.+....+..|.++...+... +..+.+.+++++++.+|+|||||++. .|++|||++++.
T Consensus 101 ~~~~~g~~v~~ig~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~a~t~~G~cGgplv~~~~~~~~IvGih~aG~- 179 (199)
T d2bhga1 101 ARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSAGG- 179 (199)
T ss_dssp CEECTTCEEEEEEEETTTEEEEEEEEESSCEECCC-----CCTTEEEEECCCCTTCTTCEEEEEETTEEEEEEEEEEEE-
T ss_pred ccccccceEEEEEcCCCCCceEEEEEEEEecceeecCCCccccCEEEEEeccCCCCcCCeEEEecCCeEEEEEEEeCCC-
Confidence 77889999999999999888888898887765443 33445789999999999999999953 568999999974
Q ss_pred CCcceeEEEEehHHHHHHHHHHHh
Q 018198 330 GAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 330 ~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.+++||.|+. ++.+++++.
T Consensus 180 ---~g~G~a~~it--~e~i~~~~~ 198 (199)
T d2bhga1 180 ---NGVGYCSCVS--RSMLQKMKA 198 (199)
T ss_dssp ---TTEEEEEECC--HHHHHHHHH
T ss_pred ---CCEEEEEEcc--HHHHHHHHc
Confidence 3578998874 566666654
|
| >d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: alpha-Lytic protease species: Lysobacter enzymogenes, 495 [TaxId: 69]
Probab=99.71 E-value=2.2e-17 Score=141.61 Aligned_cols=152 Identities=19% Similarity=0.189 Sum_probs=103.2
Q ss_pred EEEE--eCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecC-------CCCCCC
Q 018198 190 GFLW--DQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSV-------SADLRV 260 (359)
Q Consensus 190 Gfii--~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~-------~~~~~~ 260 (359)
||.+ +.++|||||+||+.....+.+ ++..........++..|+|||+++......+...+.. ...+..
T Consensus 20 Gf~v~~~~~~~ilTA~Hc~~~~~~~~~---~~~~~~~~~~~~~p~~D~All~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 96 (198)
T d2h5ca1 20 GFSVTRGATKGFVTAGHCGTVNATARI---GGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAV 96 (198)
T ss_dssp CEEEEETTEEEEEECGGGCCTTCEEEE---TTEEEEEEEEEECSBSCEEEEEECTTSEEEEEEEETTEEEECCBCCCCCT
T ss_pred eEEEEECCCCEEEEChhcCCCCCeEEE---CCeeeeeEEeeecCCCcEEEEEecCCCccCceeecCCccccccCceeecc
Confidence 6654 444689999999988876654 3444555555678999999999987543333333322 244567
Q ss_pred CCEEEEEecCCCCCCceeEeEEeeeecc--cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCC-------
Q 018198 261 GKKIYAIGHPLGWSFTCTTGVISALDRE--IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGA------- 331 (359)
Q Consensus 261 G~~v~~iG~p~~~~~~~~~G~vs~~~~~--~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~------- 331 (359)
|+++...|++.+ ...+.+...... ........++++++++++|+||||+||.+|++|||++......
T Consensus 97 G~~v~~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdSGGPv~~~~g~vvGI~sgg~~~~~~~~~~~ 172 (198)
T d2h5ca1 97 GAAVCRSGRTTG----YQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGI 172 (198)
T ss_dssp TCEEEEEETTTE----EEEEEEEEEEEEEEETTEEEEEEEEECSCCBTTCTTCEEECTTCBEEEEEEEECCCTTSBSTTS
T ss_pred CCcccccCcccc----eEEeeeeecccccccCCceeeeeEEEeeeeecccccccEEcCCCEEEEEEccccccCCCccccc
Confidence 888888877543 333333333222 2233345678999999999999999999999999999876221
Q ss_pred --cceeEEEEehHHHHHHH
Q 018198 332 --FSGIGFALPIDTVRGIV 348 (359)
Q Consensus 332 --~~~~~~aip~~~i~~~l 348 (359)
.....|+.|++.+..-+
T Consensus 173 ~~~~~~~~~~pi~~vl~~~ 191 (198)
T d2h5ca1 173 PASQRSSLFERLQPILSQY 191 (198)
T ss_dssp CGGGCCEEEEEHHHHHHHH
T ss_pred cCCCceEEEEEHHHHHHHc
Confidence 23468999998766543
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.5e-17 Score=118.03 Aligned_cols=74 Identities=43% Similarity=0.631 Sum_probs=70.4
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+|+++.+++|..|+|+++.+.|.+||||+.||.+++++ ++.+||||++.++++.++||.+||+|++||.+|.++
T Consensus 1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl 75 (76)
T d2f1fa1 1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 75 (76)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence 36889999999999999999999999999999999877 788999999999999999999999999999999885
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=2.6e-17 Score=117.36 Aligned_cols=75 Identities=31% Similarity=0.522 Sum_probs=71.0
Q ss_pred eeeEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 43 QRHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 43 ~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
.+|+++.+++|..|+|+++.+.|.+||||+.||.+++++ ++.+||||++.++++.++||.+||+|+++|.+|.++
T Consensus 2 k~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl 77 (78)
T d2fgca2 2 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 77 (78)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred ceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 357899999999999999999999999999999999877 788999999999999999999999999999999875
|
| >d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Glutamyl endopeptidase species: Bacillus intermedius [TaxId: 1400]
Probab=99.64 E-value=1.3e-16 Score=137.84 Aligned_cols=171 Identities=18% Similarity=0.116 Sum_probs=105.4
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC------eEEEEec--CC----cEEEEEEEE--
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS------TVKVSFS--DQ----STFYAQVVG-- 228 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~------~~~v~~~--~g----~~~~~~v~~-- 228 (359)
.+++++|... .+.|||++|+++ ||||||||+.+.. .+.+... +. ......-+.
T Consensus 19 ~~~~~~i~~~------------~~~CsG~LI~~~-~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (215)
T d1p3ca_ 19 YNSIAYITFG------------GSSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVP 85 (215)
T ss_dssp GGGEEEEECS------------SCEEEEEEEETT-EEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECC
T ss_pred cEEEEEEEcC------------CeEEEEEEEeCC-EEEECcceeccCCCCceeeeEEEeccccCCCCCceeEEEeEEEEe
Confidence 3477887652 247999999987 9999999995432 2333331 11 122332222
Q ss_pred ------EcCCCCEEEEEEcCCCC-CccceEecCCCCCCCCCEEEEEecCCCCCC---ceeEeEEeeeecccCCcccccEE
Q 018198 229 ------HDQVNDLAVLHIDAPNH-ELRPIHVSVSADLRVGKKIYAIGHPLGWSF---TCTTGVISALDREIPGRLIQGVI 298 (359)
Q Consensus 229 ------~d~~~DlAll~v~~~~~-~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~---~~~~G~vs~~~~~~~~~~~~~~i 298 (359)
.+..+|+|||+++.+.. ...++.+. ......|+.++++|||.+... ........... ........
T Consensus 86 ~~~~~~~~~~~DiAll~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 160 (215)
T d1p3ca_ 86 SGYINTGASQYDFAVIKTDTNIGNTVGYRSIR-QVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSV----TREDTNLA 160 (215)
T ss_dssp HHHHHHCCGGGCCEEEEESSCHHHHHCCCCBC-CCSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEEC----CEECSSEE
T ss_pred cccccCCCccceEEEEEeccCCCccccccccc-cccccCCceeEEEcCCCCcCCCcccceeeEeeecc----cccccccc
Confidence 13567999999987532 22334443 345568999999999864211 11111111000 11112456
Q ss_pred EEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEeh-HHHHHHHHHHHh
Q 018198 299 QIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPI-DTVRGIVDQLVK 353 (359)
Q Consensus 299 ~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~-~~i~~~l~~l~~ 353 (359)
..++.+++|+|||||+|.+|+||||++++.... ..+.+..+ ..+..+++.+++
T Consensus 161 ~~~~~~~~G~SGgPl~~~~~~lvGi~s~g~~~~--~~~~~~~i~~~v~~~i~wi~~ 214 (215)
T d1p3ca_ 161 YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNG--TINGGPKATAAFVEFINYAKA 214 (215)
T ss_dssp EECCCCCTTCTTCEEECTTSCEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHHT
T ss_pred eeecccCCCCccCeEECCCCEEEEEEEeccCCC--CCCCCeEEEeEHHHHHHHHHc
Confidence 778899999999999999999999999986432 23444444 567777776654
|
| >d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Glutamic acid-specific protease species: Streptomyces griseus [TaxId: 1911]
Probab=99.59 E-value=2.4e-14 Score=120.50 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=99.1
Q ss_pred cceEE-EEEEeCCC--EEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCC------
Q 018198 185 RGSGA-GFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVS------ 255 (359)
Q Consensus 185 ~~~Gs-Gfii~~~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~------ 255 (359)
...|| ||.+.+++ |||||+||+.+...+.+. .+++.........++.+|+|+++++........+.+...
T Consensus 11 ~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~~~~~~~-~~~~~~~~~~~~~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T d1hpga_ 11 GSRCSAAFNVTKGGARYFVTAGHCTNISANWSAS-SGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNGSTQDIS 89 (187)
T ss_dssp TEEEECCEEEEETTEEEEEECHHHHTTCSEEESS-TTCCEEEEEEEEECSBSCEEEEEECSSCCCCSEEECSSSCEEECC
T ss_pred CCeEeeeEEEEcCCCcEEEEchhcCCCCCeeEEC-CCCEEEEEEEeecccCCchhheecccCcccceeEecCCCcccccc
Confidence 34677 89997543 899999999987765432 355667777778889999999999875432333332211
Q ss_pred --CCCCCCCEEEEEecCCCCCCceeEeEEeeeecc--cCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecC-C
Q 018198 256 --ADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE--IPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITS-G 330 (359)
Q Consensus 256 --~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~--~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~-~ 330 (359)
.....+.++...+... ...........+. .........++.+..+++|||||||++ +++++||+++... .
T Consensus 90 g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDSGgPl~~-~~~~vGi~s~g~~~~ 164 (187)
T d1hpga_ 90 SAANAVVGQAIKKSGSTT----KVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFA-GSVALGIHSGSSGCS 164 (187)
T ss_dssp EECCCCTTCEEEEEETTT----EEEEEEEEEEEEEEEETTEEEEEEEEECCCCCTTCTTCEEEE-TTEEEEEEEEESCCB
T ss_pred cceeeeccccccccccce----eeeeeeeeeccccEEcCCccEeccEEcCcccccCCCCCeEEE-CCEEEEEEEEEecCC
Confidence 1112223333222211 1111111111111 112233456788999999999999997 6899999999863 3
Q ss_pred CcceeEEEEehHHHHHHH
Q 018198 331 AFSGIGFALPIDTVRGIV 348 (359)
Q Consensus 331 ~~~~~~~aip~~~i~~~l 348 (359)
...+..|+.|++.+...+
T Consensus 165 ~~~~~~~~~pv~~~l~~~ 182 (187)
T d1hpga_ 165 GTAGSAIHQPVTEALSAY 182 (187)
T ss_dssp TTBCCCEEEEHHHHHHHH
T ss_pred CCCCCEEEEEHHHHHHHh
Confidence 335578999998776543
|
| >d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Kallikrein 6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.7e-12 Score=107.46 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=110.5
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEec-------CCcEEEEEEEEEc---
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS-------DQSTFYAQVVGHD--- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~-------~g~~~~~~v~~~d--- 230 (359)
.--|.+|.|.... ...|+|.||+++ ||||+|||+.....+.+-.. ........-+..+
T Consensus 10 ~~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~y 77 (221)
T d1lo6a_ 10 TSHPYQAALYTSG-----------HLLCGGVLIHPL-WVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDY 77 (221)
T ss_dssp TSCTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCTTCEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred CCCCCEEEEEECC-----------cEEEEEEEEeCC-EEEECeeccccccceeeceeeecccCccceeeeccccccCCCc
Confidence 4568889986521 237999999987 99999999987654433221 1122333323333
Q ss_pred ----CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC----CceeEeEEeeeecc-----cCCccc
Q 018198 231 ----QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS----FTCTTGVISALDRE-----IPGRLI 294 (359)
Q Consensus 231 ----~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~-----~~~~~~ 294 (359)
..+|+|||+++.... .+.++.+. ......++.+.+.||..... .......+...... ......
T Consensus 78 ~~~~~~~diAll~l~~~~~~~~~v~pi~l~-~~~~~~~~~~~~~Gwg~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~ 156 (221)
T d1lo6a_ 78 DAASHDQDIMLLRLARPAKLSELIQPLPLE-RDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQIT 156 (221)
T ss_dssp CTTTCTTCCEEEEESSCCCCBTTBCCCCBC-CCTTCCCCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHSTTTCC
T ss_pred ccccccceeEEeecccccceeeeEEecccc-ccCCcccceEEEEecccccCCCCCccceEEEEEEecHHHHHHHcCCCcc
Confidence 356999999987543 45677775 45567889999999975322 12222222222211 111111
Q ss_pred ccEEEE-c----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 295 QGVIQI-D----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 295 ~~~i~~-~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.+.... + ...+.|+|||||+ .++.++||.+++..+. ...-..+.-+...++|+++.+|
T Consensus 157 ~~~~~~~~~~~~~~~c~gd~G~Pl~-~~~~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik 221 (221)
T d1lo6a_ 157 QNMLCAGDEKYGKDSCQGDSGGPLV-CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221 (221)
T ss_dssp TTEEEEECTTTCCBCCTTTTTCEEE-ETTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred CCceeeeccccCCCCccCCCCCcEE-ECCEEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence 222332 2 2368899999999 6789999999865321 1223456778888888887764
|
| >d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Neuropsin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1.3e-11 Score=106.50 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=111.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCc-------EEEEEEEEEc----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQS-------TFYAQVVGHD---- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~-------~~~~~v~~~d---- 230 (359)
.-|.+|.|.... ...|+|.+|+++ ||||+|||+.+............ ......+..+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (225)
T d1npma_ 11 SQPWQAALFQGE-----------RLICGGVLVGDR-WVLTAAHCKKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYN 78 (225)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCSSCEEEESCSBTTC--CCCEEECEEEEEECTTCC
T ss_pred CCCCEEEEEECC-----------cEEEEEEEEcCC-EEEEchHhCccccccccccccccccCCCcceeeeeeeEEEEeee
Confidence 457888886421 237999999987 99999999988766544332211 1111112211
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeeccc-----C
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREI-----P 290 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~-----~ 290 (359)
..+|||||+++.+.. ...++.+.. .....++.+++.||+.... ..+....+....... .
T Consensus 79 ~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 157 (225)
T d1npma_ 79 NSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN-LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP 157 (225)
T ss_dssp SSCTTCCTTCCEEEEESSCCCCSSSSCCCEECS-SCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHST
T ss_pred ccCcccchhhhhhhhcccccccccccccccccc-ccccCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHHhhhcc
Confidence 256999999987533 456667753 4456788999999974321 122333333222211 1
Q ss_pred CcccccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHH
Q 018198 291 GRLIQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 ~~~~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~ 352 (359)
.......++.. ...|.|+|||||+ .++.++||.+++.... ...-..+..+...++|+++.+
T Consensus 158 ~~~~~~~~C~~~~~~~~~c~gd~G~pl~-~~~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i 224 (225)
T d1npma_ 158 GKITEGMVCAGSSNGADTCQGDSGGPLV-CDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224 (225)
T ss_dssp TTCCTTEEEEECTTCCBCCTTCTTCEEE-ETTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHH
T ss_pred CCcCCCEEEecCCCCCccccCCCCceEE-EccEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence 22223456652 4578999999999 5789999999875322 122355788888888888754
|
| >d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Heparin binding protein, HBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=8.3e-12 Score=107.75 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecCC---------cEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSDQ---------STFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~g---------~~~~~~v~~~d 230 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. ...+..... ..........+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (225)
T d1a7sa_ 11 QFPFLASIQNQG-----------RHFCGGALIHAR-FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSE 78 (225)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEEC
T ss_pred CCCcEEEEEECC-----------cEEEEEEEEcCC-EEEECeeeeeeccccceeeEEeeeecccccccccceeeeeeeee
Confidence 367788886421 236999999987 9999999997643 233333211 11222222222
Q ss_pred -------CCCCEEEEEEcCCCC---CccceEec-CCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccCCccc
Q 018198 231 -------QVNDLAVLHIDAPNH---ELRPIHVS-VSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIPGRLI 294 (359)
Q Consensus 231 -------~~~DlAll~v~~~~~---~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~~~~~ 294 (359)
..+|||||+++.+.. ...++.+. ....+..++...+.||..... .......+..+.........
T Consensus 79 ~~~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 158 (225)
T d1a7sa_ 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNN 158 (225)
T ss_dssp SSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCTTE
T ss_pred eeccccccccccchhhcCCcccccccceeEEeeccccccCCCceeEeccccccccccccccceeEEEEEEeehhhccccc
Confidence 246999999987543 23344443 234566789999999865322 12233333333333322111
Q ss_pred c--cEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 295 Q--GVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 295 ~--~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
. ....-+...+.|+||||++ .+++++||.+++......+-..+.-+...++|+++.+++
T Consensus 159 ~~~~~~~~~~~~c~gdsG~Pl~-~~~~l~Gi~S~~~~~c~~~p~v~t~v~~y~~WI~~~i~~ 219 (225)
T d1a7sa_ 159 VCTGVLTRRGGICNGDGGTPLV-CEGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNN 219 (225)
T ss_dssp EEEECSSSSCBCCTTCTTCEEE-ETTEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred ceeeecccccccccCCCCCCEE-EeCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCC
Confidence 0 0011134578899999999 579999999998743333345677889999999998874
|
| >d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Trypsin(ogen) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=1.2e-11 Score=106.73 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=113.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEec-------CCcEEEEEEEEEcC---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS-------DQSTFYAQVVGHDQ--- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~-------~g~~~~~~v~~~d~--- 231 (359)
--|.+|.|.. ....|+|.+|+++ ||||+|||+.+......... ............++
T Consensus 11 ~~Pw~v~l~~------------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~ 77 (223)
T d1j16a_ 11 SVPYQVSLNS------------GYHFCGGSLINDQ-WVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFD 77 (223)
T ss_dssp SSTTEEEEES------------SSEEEEEEEEETT-EEEECGGGCCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCB
T ss_pred CCCcEEEEeC------------CCEEEEEEEEcCC-EEEeCHHHCCCcCCceeeeeeeccccccceeeeeeeEEecCCCC
Confidence 4567787742 1237999999987 99999999987665443331 12233333333333
Q ss_pred ----CCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC------ceeEeEEeeeeccc----CC-cc
Q 018198 232 ----VNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF------TCTTGVISALDREI----PG-RL 293 (359)
Q Consensus 232 ----~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~~~~~----~~-~~ 293 (359)
.+||||++++.+.. ...++.|.. .....|+.+.+.||...... .+..-.+....... .. ..
T Consensus 78 ~~~~~~diAll~L~~~v~~~~~~~picL~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 156 (223)
T d1j16a_ 78 RETYNNDIMLIKLSSPVKLNARVATVALPS-SCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFII 156 (223)
T ss_dssp TTTTBTCCEEEEESSCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCCCSSSCCCCSBCEEEEEEEECHHHHHSSSSCCC
T ss_pred ccccceeEEEEEecCccccceeEEEEecCC-cCCCCCCEEEEEeeeeeeCCCccCcceeeEEEEEEEEhhHhhcccccee
Confidence 35999999987543 566778864 55678999999999753211 12222222222111 11 12
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
..+.++.. ...+.|++|||++ .+++|+||++++...+. ..-..+..+...++|+++.++.
T Consensus 157 ~~~~~C~~~~~~~~~~c~gd~g~pl~-~~~~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~~ 222 (223)
T d1j16a_ 157 TDNMVCVGFLEGGKDACQGDSGGPVV-CNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAA 222 (223)
T ss_dssp CTTEEEESCTTCSCBCCTTCTTCEEE-ETTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred CCCceEEecCCCCCcccCCccCCcEE-EeeEEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHhc
Confidence 23456652 2467899999999 57999999999873322 2235678888889999887763
|
| >d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Trypsin(ogen) species: North atlantic salmon (Salmo salar) [TaxId: 8030]
Probab=99.41 E-value=1e-11 Score=107.15 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=111.3
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC------cEEEE--EEEEEc----
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ------STFYA--QVVGHD---- 230 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g------~~~~~--~v~~~d---- 230 (359)
-|.+|.|.. . ...|+|.+|+++ ||||+|||+.+.....+...+. ..... ..+...
T Consensus 12 ~Pw~v~l~~----~--------~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (222)
T d1hj8a_ 12 QPHQVSLNS----G--------YHFCGGSLVNEN-WVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSS 78 (222)
T ss_dssp CTTEEEEES----S--------SEEEEEEEEETT-EEEECGGGCCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBT
T ss_pred CCeEEEEEC----C--------CEEEEEEEeeCC-EEEeCceecccccCcceeeccccccCCccccccceEEEecccccc
Confidence 578888842 1 237999999987 9999999998877665554221 11111 222211
Q ss_pred --CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecc-----cCCcccc
Q 018198 231 --QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDRE-----IPGRLIQ 295 (359)
Q Consensus 231 --~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~-----~~~~~~~ 295 (359)
..+||||++++.+.. ...++.|. ......+..+.+.||..... ..+..-.+..+... .......
T Consensus 79 ~~~~~diALl~l~~~v~~~~~~~picl~-~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~ 157 (222)
T d1hj8a_ 79 YNIDNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITN 157 (222)
T ss_dssp TTTBSCCEEEEESSCCCCSSSCCCCBCC-SSCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTTCCCT
T ss_pred cccCCcEEEEecccceeeeceeEEEECC-CcCCCCCceEEEEeccccccccccccccEEEEEEEeCHHHHhhhccccccc
Confidence 256999999987542 46677775 45667899999999865322 12222223222211 1112223
Q ss_pred cEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 296 GVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 296 ~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..+++. ...|.|+|||||+ .+++++||.+++.... ...-..+.-+...++|+++.++
T Consensus 158 ~~~C~~~~~~~~~~c~gdsGgPl~-~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~ 220 (222)
T d1hj8a_ 158 AMFCAGYLEGGKDSCQGDSGGPVV-CNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220 (222)
T ss_dssp TEEEESCTTSSCBCCTTCTTCEEE-ETTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred ceEEEccCCCCcccccCCcccEEE-ECCEEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence 456652 2468899999999 5899999999886322 1223456678888888888776
|
| >d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Trypsin(ogen) species: Mold (Fusarium oxysporum) [TaxId: 5507]
Probab=99.41 E-value=5.5e-12 Score=108.82 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=108.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC------CcEEEEEEEEEc---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD------QSTFYAQVVGHD--- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~------g~~~~~~v~~~d--- 230 (359)
-.|.+|.|.... ...|+|.+|+++ ||||+|||+.... ...+.... ........+..+
T Consensus 11 ~~Pw~v~l~~~~-----------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~ 78 (224)
T d1gdna_ 11 DFPFIVSISRNG-----------GPWCGGSLLNAN-TVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSY 78 (224)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECHHHHTTSCGGGEEEEESCSBSSSSSEEEEEEEEEECTTC
T ss_pred CCCcEEEEEECC-----------CEEEEEEEEeCC-EEEECcccceeccccccceeeccccccCCcceEEEEEEEeeecc
Confidence 467888886421 236999999987 9999999997654 33444422 222333333333
Q ss_pred --CCCCEEEEEEcCCCC---CccceEec-CCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccC-----Ccc
Q 018198 231 --QVNDLAVLHIDAPNH---ELRPIHVS-VSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIP-----GRL 293 (359)
Q Consensus 231 --~~~DlAll~v~~~~~---~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~-----~~~ 293 (359)
..+|||||+++.+.. ...++.+. .......++.+.+.||..... ..+....+..+....+ ...
T Consensus 79 ~~~~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~~~~ 158 (224)
T d1gdna_ 79 SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSA 158 (224)
T ss_dssp BTTBSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTT
T ss_pred ccccceeEEEeeccccccccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccccCc
Confidence 457999999987543 23344443 233456789999999975321 1233334433322211 111
Q ss_pred -cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcce-eEEEEehHHHHHHHHHH
Q 018198 294 -IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSG-IGFALPIDTVRGIVDQL 351 (359)
Q Consensus 294 -~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~-~~~aip~~~i~~~l~~l 351 (359)
........ ...|.|+|||||++.++.++||.+++...+..+ -..+.-+...++|+|..
T Consensus 159 ~~~~~~~~~~~~~~~~~c~~dsG~pl~~~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~ 223 (224)
T d1gdna_ 159 ITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223 (224)
T ss_dssp SCTTEEEECCTTCCCBCCTTCTTCEEECTTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred cccceeeeecCCCCccccccccCCceEecCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence 11222221 246889999999988899999999976322222 35577788888888764
|
| >d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: (alpha,gamma)-chymotrypsin(ogen) species: Red fire ant (Solenopsis invicta) [TaxId: 13686]
Probab=99.41 E-value=3.6e-12 Score=109.66 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=114.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEec------CCcEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFS------DQSTFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~------~g~~~~~~v~~~d-- 230 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.... .+..... ++.....+-+..+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~ 78 (222)
T d1eq9a_ 11 KYPYQVSLRLSG-----------SHRCGASILDNN-NVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKN 78 (222)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEECSSS-EEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTT
T ss_pred CCCcEEEEEECC-----------CEEEEEEEEeCC-EEEECceeccccccccceeeecceeccccCcceeeeeeEEEeec
Confidence 457888886421 237999999987 9999999997643 2333332 2333444444443
Q ss_pred -----CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----Ccc
Q 018198 231 -----QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP----GRL 293 (359)
Q Consensus 231 -----~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~----~~~ 293 (359)
..+|||||+++.+.. .+.++.+........+..+.+.||..... .......+........ ...
T Consensus 79 y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 158 (222)
T d1eq9a_ 79 YDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRV 158 (222)
T ss_dssp CBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSSC
T ss_pred ccccccccceehhhccCCcccccccccccccccccccccceeEEeeeeeecCCCCCCccceEEEEEEechHHhccccccc
Confidence 246999999987543 45667776666677888999999975322 2233444443332111 122
Q ss_pred cccEEEEcc----cCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 294 IQGVIQIDA----SVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 294 ~~~~i~~~~----~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....++... ..|.|+|||||+ .++.++||++++...+...-..+..+...++|+++-++
T Consensus 159 ~~~~~c~~~~~~~~~c~~d~G~pl~-~~~~L~GI~s~~~~c~~~~p~vyt~v~~y~~WI~~~i~ 221 (222)
T d1eq9a_ 159 IDSHICTLTKRGEGACHGDSGGPLV-ANGAQIGIVSFGSPCALGEPDVYTRVSSFVSWINANLK 221 (222)
T ss_dssp CTTEEEECCCTTCBCCTTCTTCEEE-ETTEEEEEEEECSTTTSSSCEEEEEGGGGHHHHHHTSC
T ss_pred cCcceEeccCCCCCccccCCcCCEE-EcCEEEEEEEECCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence 234455432 467899999999 58999999998763222233556788888888887654
|
| >d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Chymase (mast cell protease I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.9e-11 Score=103.48 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=109.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d-- 230 (359)
.-|.+|.|.....+.. ...|+|.+|+++ ||||+|||+... ..|++.+ .......-+..+
T Consensus 9 e~Pw~v~i~~~~~~~~-------~~~C~G~LIs~~-~VLTaAhCv~~~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~ 78 (224)
T d1nn6a_ 9 SRPYMAYLEIVTSNGP-------SKFCGGFLIRRN-FVLTAAHCAGRS--ITVTLGAHNITEEEDTWQKLEVIKQFRHPK 78 (224)
T ss_dssp SSTTEEEEEEECTTSC-------EEEEEEEEEETT-EEEECGGGCCSE--EEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCCCEEEEEEEeCCCC-------ceEEEEEEEeCC-EEEehhhccccc--ceEEecccccccccccccceeEEEEEEeec
Confidence 4578888876433222 236999999987 999999999654 4455421 122223333333
Q ss_pred -----CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----Cc
Q 018198 231 -----QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP----GR 292 (359)
Q Consensus 231 -----~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~----~~ 292 (359)
...|+|||++..+.. ...++.+.. ......+..+...||..... .......+.......+ ..
T Consensus 79 ~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 158 (224)
T d1nn6a_ 79 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDF 158 (224)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBCCGGGGTTSTTC
T ss_pred ccccccccchhhhcccCCcccccccccccccccccccCCCceeeeccccccccCCCccccceEEEEEecCHHHHhhhccc
Confidence 246999999986532 334444433 34456788999999864211 1223333333222211 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....++.. ...|.|+|||||+ .++.++||++++.... ..-..+.-+...++|+++.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~c~gDsG~PL~-~~~~l~GI~s~g~~~~-~~p~vyt~v~~y~~WI~~~i~~ 223 (224)
T d1nn6a_ 159 DHNLQLCVGNPRKTKSAFKGDSGGPLL-CAGVAQGIVSYGRSDA-KPPAVFTRISHYRPWINQILQA 223 (224)
T ss_dssp CTTTEEEECCTTTC--CCCCCTTCEEE-ETTEEEEEEEECCTTC-CSCEEEEEHHHHHHHHHHHHHT
T ss_pred ccceeeeccCccccccccCCCccceEE-ECCEEEEEEEECCCCC-CCCeEEEEHHHHHHHHHHHHhc
Confidence 112233321 2468899999999 5789999999876332 2235578899999999998764
|
| >d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Granzyme B species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=2.4e-11 Score=105.01 Aligned_cols=181 Identities=14% Similarity=0.178 Sum_probs=110.9
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc-
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d- 230 (359)
-.-|.+|.|........ .-.|+|.+|+++ ||||+|||+.+... +.+.. .......-+..+
T Consensus 10 ge~P~~v~i~~~~~~~~-------~~~C~GtLI~~~-~VLTaAhC~~~~~~--v~~G~~~~~~~~~~~~~~~v~~i~~~~ 79 (227)
T d1fi8a_ 10 HSRPYMAYLQIMDEYSG-------SKKCGGFLIRED-FVLTAAHCSGSKIQ--VTLGAHNIKEQEKMQQIIPVVKIIPHP 79 (227)
T ss_dssp TSSTTEEEEEEECTTC--------CCEEEEEEEETT-EEEECGGGCCSEEE--EEESCSBTTSCCTTCEEEEEEEEEECT
T ss_pred CCCCCEEEEEEEeCCCC-------ceEEEEEEEeCC-EEEEecccccccce--eeeeecccccCCCCceEEEEEEEEecc
Confidence 34678899976543222 236999999987 99999999976544 44321 112222222222
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC-----
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP----- 290 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~----- 290 (359)
..+||||++++.+.. .+.++.+.. ...+..|+.++..||...... ......+..+.....
T Consensus 80 ~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~c~~~~~ 159 (227)
T d1fi8a_ 80 AYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLK 159 (227)
T ss_dssp TCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCHHHHHHHTT
T ss_pred cccCccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCCCCCceeeEEEEEEEEchhhhhhhh
Confidence 356999999987543 445555532 345678999999998753221 222223322221111
Q ss_pred -CcccccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 291 -GRLIQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 -~~~~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.......+.. +...|.|+|||||+ .++.++||.+++...... -..+.-+...++|+++.+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~-~~~~l~Gi~S~g~~~~~~-p~vyt~v~~y~~WI~~~i~ 226 (227)
T d1fi8a_ 160 NYFDKANEICAGDPKIKRASFRGDSGGPLV-CKKVAAGIVSYGQNDGST-PRAFTKVSTFLSWIKKTMK 226 (227)
T ss_dssp TTCCTTTEEEESCTTSCCBCCTTCTTSEEE-ETTEEEEEEEEEETTCCS-CEEEEEGGGGHHHHHHHHC
T ss_pred cccccceeeeeeeccccCCCcCCCcCCEEE-ECCEEEEEEEEcCCCCCC-CeEEEEHHHHHHHHHHHHc
Confidence 1111223333 23468899999999 478999999988643322 2456788889999988765
|
| >d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Elastase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5e-12 Score=108.52 Aligned_cols=179 Identities=17% Similarity=0.274 Sum_probs=107.7
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC--------CcEEEEEEEEEc
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD--------QSTFYAQVVGHD 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~--------g~~~~~~v~~~d 230 (359)
..-|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. .+.+.+.. ...........+
T Consensus 10 ~~~Pw~v~i~~~~-----------~~~C~G~LIs~~-~VLTaAhC~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (218)
T d2z7fe1 10 HAWPFMVSLQLRG-----------GHFCGATLIAPN-FVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFE 77 (218)
T ss_dssp TSSTTEEEEEETT-----------EEEEEEEEEETT-EEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred CCCCcEEEEEECC-----------CeEEEEEEEeCC-EEEECeEecccccccceeeeeeeccccccccceeeeeeeeEee
Confidence 3467888887522 236999999987 9999999997643 34555532 122222222222
Q ss_pred -------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccCCccc
Q 018198 231 -------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIPGRLI 294 (359)
Q Consensus 231 -------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~~~~~ 294 (359)
..+|||||+++.+.. ...++.+.. ...+..+....+.||...... ......+.... .......
T Consensus 78 ~~~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-~~c~~~~ 156 (218)
T d2z7fe1 78 NGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRSN 156 (218)
T ss_dssp SCCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEEC-TTCCTTS
T ss_pred eccccccccceEEEeeccccceeeeeeeeeeeccCccccCCCcEEEEeccceeecccccccceeEEEecccc-cccceee
Confidence 356999999987643 345555543 344566778888998643221 12222222111 1111111
Q ss_pred ccEEEE--cccCCCCCccceeecCCCeEEEEEeeecCCCcce--eEEEEehHHHHHHHHHHHh
Q 018198 295 QGVIQI--DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSG--IGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 295 ~~~i~~--~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~--~~~aip~~~i~~~l~~l~~ 353 (359)
...... ....|.|+|||||+ .++.++||.++...+...+ -..+..+...++|+++.+|
T Consensus 157 ~~~~~~~~~~~~C~gdsG~Pl~-~~~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~ 218 (218)
T d2z7fe1 157 VCTLVRGRQAGVCFGDSGSPLV-CNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218 (218)
T ss_dssp EEEECTTSCCBCCTTCTTCEEE-ETTEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred eeeeecCcccCccccccCCCEE-ECCEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence 111111 12478999999999 6899999999875332211 2567889998999998765
|
| >d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Myeloblastin, PR3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.5e-11 Score=104.26 Aligned_cols=179 Identities=14% Similarity=0.221 Sum_probs=109.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC--------CcEEEEEEEEEc-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD--------QSTFYAQVVGHD- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~--------g~~~~~~v~~~d- 230 (359)
--|.+|.|.....+. ...|+|.+|+++ ||||+|||+.... .+.|.+.+ +..........+
T Consensus 11 ~~Pw~v~i~~~~~~~--------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T d1fuja_ 11 SRPYMASLQMRGNPG--------SHFCGGTLIHPS-FVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLN 81 (221)
T ss_dssp SCTTEEEEEETTBTT--------CCCEEEEEEETT-EEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEEC
T ss_pred CCCcEEEEEEecCCC--------CEEEEEEEEeCC-EEEEeeEEEeecCCccceeeeeccccccccccceeeeeeeEEEe
Confidence 467888887532211 236999999987 9999999997653 45666532 222322222222
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccCCcccc
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIPGRLIQ 295 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~~~~~~ 295 (359)
..+|||||+++.+.. .+.++.|... .....+...++.||...... ......+... .......
T Consensus 82 ~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-- 158 (221)
T d1fuja_ 82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCRPH-- 158 (221)
T ss_dssp CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CTTCCTT--
T ss_pred eecCCCCccEEEEEEccccccccceEEEEEecccccccCCCceEEEecccccccccccCccceeeeeeee-eeccccc--
Confidence 346999999987543 4556666543 34567889999999754221 1222222211 1111110
Q ss_pred cEEEE----cccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHh
Q 018198 296 GVIQI----DASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 296 ~~i~~----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~ 353 (359)
..... ....|.|+|||||+ .++.++||.++...+. ...-..+.-+...++|+++.+|
T Consensus 159 ~~~~~~~~~~~~~c~gd~G~pl~-~~~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik 221 (221)
T d1fuja_ 159 NICTFVPRRKAGICFGDSGGPLI-CDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221 (221)
T ss_dssp EEEEECSSSSCBCCTTCTTCEEE-ETTEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred cceeccccCCCceeCCccCCCEE-EeCEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence 11111 23578899999999 5789999999875322 1122556788888898888765
|
| >d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Duodenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.35 E-value=1.9e-11 Score=105.41 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=109.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEe-------cCCcEEEEEEEEEcC---
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSF-------SDQSTFYAQVVGHDQ--- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~-------~~g~~~~~~v~~~d~--- 231 (359)
--|.+|.|.....+. ...|+|.+|+++ ||||+|||+.......+.. ..+..+..+-+..++
T Consensus 11 e~Pw~v~i~~~~~~~--------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~hp~~~ 81 (224)
T d1eufa_ 11 SRPYMAFLLFKTSGK--------SHICGGFLVRED-FVLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIPHPDYN 81 (224)
T ss_dssp SCTTEEEEEEESSSS--------EEEEEEEEEETT-EEEECGGGCCEEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCC
T ss_pred CCCCEEEEEEEcCCC--------cEEEEEEEEcCC-EEEeeceecccccceeeeeeeecccCCCcEEEEEEEEEECCccc
Confidence 367888887543221 236999999987 9999999987654433321 123344455455554
Q ss_pred ----CCCEEEEEEcCCCC---CccceEec-CCCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC-----Ccc
Q 018198 232 ----VNDLAVLHIDAPNH---ELRPIHVS-VSADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP-----GRL 293 (359)
Q Consensus 232 ----~~DlAll~v~~~~~---~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~-----~~~ 293 (359)
.+|||||+++.+.. ...+..+. .......+....+.||...... ....-.+..+.+... ...
T Consensus 82 ~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 161 (224)
T d1eufa_ 82 DETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYI 161 (224)
T ss_dssp TTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCTTCC
T ss_pred cccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEEecccceeccccccccceeeeeccCCHHHHHHHhcccc
Confidence 47999999987542 22333332 2345677888899988643211 112222222211110 111
Q ss_pred cccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 294 IQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 294 ~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....... ....|.|+|||||+ .++.++||.+++.... ..-..+..+...++|+++.+|
T Consensus 162 ~~~~~~~~~~~~~~~~c~~dsGgpl~-~~~~l~Gi~s~g~~~~-~~p~vft~V~~y~~WI~~~ik 224 (224)
T d1eufa_ 162 PFTQICAGDPSKRKNSFSGDSGGPLV-CNGVAQGIVSYGRNDG-TTPDVYTRISSFLSWIHSTMR 224 (224)
T ss_dssp TTTEEEESCTTSCCBCCTTCTTCEEE-ETTEEEEEEEECCTTC-CSCEEEEEGGGTHHHHHHHTC
T ss_pred ccceeeeeccccccccccCCCCCeEE-EcCEEEEEEEEcCCCC-CCCeEEEEHHHHHHHHHHHhC
Confidence 1112222 22467899999999 5789999999876332 334568889999999988764
|
| >d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Cathepsin G species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.2e-11 Score=103.14 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=112.1
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC-------CcEEEEEEEEEc---
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD-------QSTFYAQVVGHD--- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~-------g~~~~~~v~~~d--- 230 (359)
.-.|.+|.|.....+ ....|+|.+|+++ ||||+|||+.+...+.+.... ......+-+..+
T Consensus 10 ~e~Pw~v~i~~~~~~--------~~~~C~GtlI~~~-~VLTaAhC~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (224)
T d1t32a1 10 HSRPYMAYLQIQSPA--------GQSRCGGFLVRED-FVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY 80 (224)
T ss_dssp TSSTTEEEEEESSST--------TSCEEEEEEEETT-EEEECGGGCCSCEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred CCCCCEEEEEEEcCC--------CCEEEEEEEEcCC-EEEEeEEcccccccceeeeeeeeccccceeeecceeEEEeecc
Confidence 346788888654322 1237999999987 999999998764333322111 122333333333
Q ss_pred ----CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC----CceeEeEEeeeec-----ccCCcc
Q 018198 231 ----QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS----FTCTTGVISALDR-----EIPGRL 293 (359)
Q Consensus 231 ----~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~-----~~~~~~ 293 (359)
..+|+||++++.+.. ...++.|.. ......+......||..... .......+.-+.. ......
T Consensus 81 ~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 160 (224)
T d1t32a1 81 NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD 160 (224)
T ss_dssp BTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSSSCCCSBCEEEEEEBCCHHHHHHHSTTCC
T ss_pred cccccccceeEEeeccccccCcccCccccccccccCCCCCEEEEecccccccCCCcceeeeeeeeecCHHHHHhhcCccc
Confidence 356999999987543 345555543 34456788899999864321 2222222222211 111112
Q ss_pred cccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
..+.++. ....|.|+|||||+ .++.++||.+++.... ..-+.+.-+...+.|+++.+|.
T Consensus 161 ~~~~~c~~~~~~~~~~c~gdsGgPl~-~~~~l~Gi~S~g~~~~-~~p~vyt~v~~y~~WI~~~i~~ 224 (224)
T d1t32a1 161 PRRQICVGDRRERKAAFKGDSGGPLL-CNNVAHGIVSYGKSSG-VPPEVFTRVSSFLPWIRTTMRS 224 (224)
T ss_dssp TTTEEEECCTTSSCBCCTTCTTCEEE-ETTEEEEEEEECCTTC-CSCEEEEEGGGSHHHHHHHHCC
T ss_pred ccccceeecccccccccccCcCCeEE-EcCEEEEEEEEcCCCC-CCCcEEEEHHHhHHHHHHHHcC
Confidence 2344444 23568899999999 5899999999976332 2235677888899999888763
|
| >d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Crab collagenase species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]
Probab=99.34 E-value=2.3e-11 Score=105.12 Aligned_cols=178 Identities=20% Similarity=0.190 Sum_probs=111.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d-- 230 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.......+.+.. .......-+..+
T Consensus 11 ~~Pw~V~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~g~~~~~~~~~~~~~~~v~~i~~~~~ 78 (226)
T d1azza_ 11 SWPHQAALFIDD-----------MYFCGGSLISPE-WILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN 78 (226)
T ss_dssp SSTTEEEEEETT-----------TEEEEEEEEETT-EEEECHHHHTTCSCEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred CCCcEEEEEECC-----------cEEEEEEEeeCC-EEEEChhhccCCcceEEEeccceeccCCcceEEEEeeeeeeccc
Confidence 457888886421 237999999987 999999999887766666522 112333323333
Q ss_pred -----CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC------ceeEeEEeeeecccC----Cc
Q 018198 231 -----QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF------TCTTGVISALDREIP----GR 292 (359)
Q Consensus 231 -----~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~~~~~~----~~ 292 (359)
..+|||||+++.+.. ...++.+. ......++...+.||...... .+....+..+....+ ..
T Consensus 79 y~~~~~~~diAll~l~~~~~~~~~~~pi~l~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 157 (226)
T d1azza_ 79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLP-STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI 157 (226)
T ss_dssp CBTTTTBSCCEEEECSSCCCCCSSSCCCBCC-SSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSC
T ss_pred cccccccchhhhhhcCCccceeecccccccc-ccccccccceeeecccccCCCcCccccEeEEEEEEEEeHHHhhhhhCc
Confidence 357999999987543 45666664 355677888999998754321 222222222221111 11
Q ss_pred ccccEEEEc----ccCCCCCccceeecCCCeEEEEEeeecCCC-cc-eeEEEEehHHHHHHHHHHHh
Q 018198 293 LIQGVIQID----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FS-GIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 293 ~~~~~i~~~----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~-~~~~aip~~~i~~~l~~l~~ 353 (359)
......... ...|.|+|||||+ .++.++||++++.... .. .-..+..+...++|+++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~c~gdsG~Pl~-~~~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g 223 (226)
T d1azza_ 158 VTDGNICIDSTGGKGTCNGDSGGPLN-YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223 (226)
T ss_dssp CCTTEEEECCTTTCBCCTTCTTCEEE-ETTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHC
T ss_pred ccccceeccccCCCccccCCcCCCEE-EcCEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhC
Confidence 111222222 2468899999998 5799999999876322 12 22456888899999888653
|
| >d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Kallikrein-13 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=7e-11 Score=102.60 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=108.4
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC-------CcEEEEEEEEEc---
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD-------QSTFYAQVVGHD--- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~-------g~~~~~~v~~~d--- 230 (359)
..-|.+|.|.... ...|+|.+|+++ ||||+|||+.+...+.+...+ ......+-...+
T Consensus 10 ~~~Pw~v~l~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (237)
T d1ao5a_ 10 NSQPWQVAVYYQK-----------EHICGGVLLDRN-WVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGF 77 (237)
T ss_dssp TSCTTEEEEEETT-----------EEEEEEEEEETT-EEEECTTCCCSSCEEEESCCBSSSCCSSCEECCEEEEEECTTS
T ss_pred CCCCcEEEEEECC-----------cEEEEEEEeeCC-EEEECHHHcCCCceEEEEeccccccccccEEEEEEEEeecccc
Confidence 3467888887421 226999999987 999999999876554432211 111112222221
Q ss_pred ---------------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC------ceeEeEEeeee
Q 018198 231 ---------------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF------TCTTGVISALD 286 (359)
Q Consensus 231 ---------------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~~ 286 (359)
..+|||||+++.+.. .+.++.+. ......+...++.||...... ....-.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 156 (237)
T d1ao5a_ 78 NMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALP-TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLP 156 (237)
T ss_dssp CGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCC-CSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEEC
T ss_pred cccccccccccCccccccceeeeccCcccccccccceeccC-CCCCcccceEEEeeeeeeccccccCCccceeeEEEEEe
Confidence 246999999987532 45666664 345567889999999743221 11122222222
Q ss_pred cc-----cCCcccccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCC-c-ceeEEEEehHHHHHHHHHHHhc
Q 018198 287 RE-----IPGRLIQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGA-F-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 287 ~~-----~~~~~~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.. .......+.++. ....|.|+|||||+. ++.++||.+++..+. . ..-..+.-+...++|+++.++.
T Consensus 157 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~-~~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~ 235 (237)
T d1ao5a_ 157 NENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMK 235 (237)
T ss_dssp HHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHH
T ss_pred hHHhhhhhcCCCCCCeEEEccCCCCCcccCCCCCCeeEE-ccEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHh
Confidence 11 111111223332 235788999999995 789999999875322 1 2235677888889998887753
|
| >d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Granzyme K species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.4e-10 Score=100.93 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=107.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEecC---------CcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFSD---------QSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~~---------g~~~~~~v~~~ 229 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. ...+.... ...+....+..
T Consensus 13 e~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 80 (240)
T d1mzaa_ 13 SRPFMASIQYGG-----------HHVCGGVLIDPQ-WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP 80 (240)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEE
T ss_pred CCCcEEEEEECC-----------eEEEEEEEEeCC-EEEECeEcccccCCcceeEEEEeecccCcCCccceeEeeeeeee
Confidence 467888886421 237999999987 9999999996543 34454422 12233343443
Q ss_pred c-------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecccC---
Q 018198 230 D-------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREIP--- 290 (359)
Q Consensus 230 d-------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~~--- 290 (359)
+ ...|+|||+++.+.. .+.++.|...............|+..... .......+........
T Consensus 81 h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~ 160 (240)
T d1mzaa_ 81 FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ 160 (240)
T ss_dssp CCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTST
T ss_pred eccccccccCcceEEEeecceeeeeeccccccccccccccceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHHhhhh
Confidence 3 256999999987543 45677776555556667788888764321 1223333333321110
Q ss_pred ------CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEeh-HHHHHHHHHHHh
Q 018198 291 ------GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPI-DTVRGIVDQLVK 353 (359)
Q Consensus 291 ------~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~-~~i~~~l~~l~~ 353 (359)
.......++.. ...|.|+|||||+ .++.++||.+++...+. ..-..+.-+ ...++|+++-++
T Consensus 161 ~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~-~~~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~i~ 235 (240)
T d1mzaa_ 161 SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLI-CKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV 235 (240)
T ss_dssp TTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEE-ETTEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTC
T ss_pred hhccCCcccccceEEeccCCCCccCccCCCCCeEE-ECCEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHHcc
Confidence 01112334432 2467899999999 58999999998763221 122334555 456777777654
|
| >d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Coagulation factor Xa-trypsin chimera species: Synthetic, based on Homo sapiens sequence
Probab=99.32 E-value=8.2e-11 Score=101.59 Aligned_cols=181 Identities=19% Similarity=0.196 Sum_probs=112.2
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEe--cCCc-------EEEEEEEEEc-
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSF--SDQS-------TFYAQVVGHD- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~--~~g~-------~~~~~v~~~d- 230 (359)
.--|.+|.|.... ....|+|.+|+++ ||||+|||+.........+ .+.. ..........
T Consensus 10 ~e~Pw~v~i~~~~----------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
T d1fxya_ 10 GEVPWQALLINEE----------NEGFCGGTILSEF-YILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHN 78 (228)
T ss_dssp TSCTTEEEEECTT----------SCEEEEEEECSSS-EEEECGGGTTSCSSCEEEEECSCTTTCCCCEEEEEEEEEEECT
T ss_pred CCCCcEEEEEEcC----------CCeEEEEEEeeCC-EEEECceeeecccccccccccccccccCCcceeeeeeccceee
Confidence 3457888886421 1347999999987 9999999997765443333 2211 1111122222
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC------ceeEeEEeeeecccC-----
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF------TCTTGVISALDREIP----- 290 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~~~~~~----- 290 (359)
..+||||++++.+.. .+.++.|... ....+..+.+.||...... .+....+.......+
T Consensus 79 ~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~-~~~~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 157 (228)
T d1fxya_ 79 RFTKETYDFDIAVLRLKTPITFRMNVAPASLPTA-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYP 157 (228)
T ss_dssp TCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHST
T ss_pred eeeccccccceeehhccccccccccccccccccc-ccccccEEEEEecccccCCCCCCCchhEEEEEEEeCHHHHhhhcC
Confidence 355999999987543 5677888644 4456889999999653221 222223322221111
Q ss_pred CcccccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHhc
Q 018198 291 GRLIQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 ~~~~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.......++. ....+.|++||||+ .+++|+||.+++.... ...-..+.-+...++|+++.++.
T Consensus 158 ~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~-~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~~ 226 (228)
T d1fxya_ 158 GKITSNMFCVGFLEGGKDSCQGDSGGPVV-CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA 226 (228)
T ss_dssp TTCCTTEEEESCTTCSCBCCTTCTTCEEE-ETTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred CcccceeeEeecCCCCcccccCccCccEE-EeCEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence 1112234443 23467899999999 5789999999876332 12235677888999999988764
|
| >d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Granzyme A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.8e-10 Score=99.61 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=106.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC--------CcEEEEEEEEEcC--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD--------QSTFYAQVVGHDQ-- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~--------g~~~~~~v~~~d~-- 231 (359)
--|.+|.|.... ...|+|.||+++ ||||+|||+.+.....+.... ......+.+..++
T Consensus 11 e~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~hp~y 78 (232)
T d1orfa_ 11 SRPYMVLLSLDR-----------KTICAGALIAKD-WVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCY 78 (232)
T ss_dssp SSTTEEEEECSS-----------SCEEEEEEEETT-EEEECTTCCCCTTCEEEESCSBSSSCCTTCEEECEEEEEECTTC
T ss_pred CCCcEEEEEECC-----------CEEEEEEEecCC-EEEEChhhcCCCCcceeeeeeeccccccccccceEEEEEecccc
Confidence 457788886421 237999999987 999999999776654443321 1112222233332
Q ss_pred -----CCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC-------
Q 018198 232 -----VNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP------- 290 (359)
Q Consensus 232 -----~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~------- 290 (359)
.+|+|||+++.+.. ...++.+.. ...+..+..+...||..... ..+..-.+.......+
T Consensus 79 ~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 158 (232)
T d1orfa_ 79 DPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYN 158 (232)
T ss_dssp CTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTT
T ss_pred cccccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeeccccccCCcccCChhheEEEeecCCHHHHhhhhhcc
Confidence 55999999987543 345555532 34567789999999964321 1222222222221111
Q ss_pred --CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCC---CcceeEEEEeh-HHHHHHHHHHHh
Q 018198 291 --GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSG---AFSGIGFALPI-DTVRGIVDQLVK 353 (359)
Q Consensus 291 --~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~---~~~~~~~aip~-~~i~~~l~~l~~ 353 (359)
.......++.. ...+.|+|||||+ .++.++||.+++... ....-..+.-+ ...++|+++.++
T Consensus 159 ~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~-~~~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~ 231 (232)
T d1orfa_ 159 FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLL-CEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231 (232)
T ss_dssp TTTCCCTTEEEEECSSCCCBCCTTCTTCEEE-ETTEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred cCccccCceEEeccCCCCcccccccCCCeEE-EcCEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhC
Confidence 11123455552 2467899999999 579999999987522 11222345555 356777777654
|
| >d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=9.1e-11 Score=101.87 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=111.2
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC---------cEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ---------STFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g---------~~~~~~v~~~d-- 230 (359)
--|.+|.|.... ....|+|.+|+++ ||||+|||+.+.....|.+... .....+-+..+
T Consensus 11 e~Pw~v~i~~~~----------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~ 79 (240)
T d1autc_ 11 DSPWQVVLLDSK----------KKLACGAVLIHPS-WVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPN 79 (240)
T ss_dssp SCTTEEEEECTT----------SCEEEEEEEEETT-EEEECGGGSSSCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTT
T ss_pred CCCCEEEEEECC----------CCEEEEEEEEeCC-EEEECceeccCcccceeeccccccccccccceeeeeecccccee
Confidence 457888886421 1237999999987 9999999999888777777431 22333333333
Q ss_pred -----CCCCEEEEEEcCCCC---CccceEecCC-----CCCCCCCEEEEEecCCCCCC----------ceeEeEEeeeec
Q 018198 231 -----QVNDLAVLHIDAPNH---ELRPIHVSVS-----ADLRVGKKIYAIGHPLGWSF----------TCTTGVISALDR 287 (359)
Q Consensus 231 -----~~~DlAll~v~~~~~---~~~~~~l~~~-----~~~~~G~~v~~iG~p~~~~~----------~~~~G~vs~~~~ 287 (359)
..+|||||+++.+.. .+.|+.|... .....|....+.||...... ......+.....
T Consensus 80 ~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
T d1autc_ 80 YSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPH 159 (240)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECH
T ss_pred eeccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEee
Confidence 346999999987543 4556666432 23467888999998653211 111122211111
Q ss_pred c-----cCCcccccEEEE-----cccCCCCCccceeecCC-C--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 288 E-----IPGRLIQGVIQI-----DASVNLGNSGGPLLDSS-G--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 288 ~-----~~~~~~~~~i~~-----~~~~~~G~SGgPl~~~~-G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
. ..........+. ....+.|+||||++..+ | .++||.+++...+ ...-..+..+...++|+++.+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~~~i~ 239 (240)
T d1autc_ 160 NECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239 (240)
T ss_dssp HHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred hhhhhhcccccccceeeeccccccCCCcCCccCceeEEcCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence 0 001111122222 22467899999999542 2 4999999876322 2233568899999999999876
Q ss_pred c
Q 018198 354 F 354 (359)
Q Consensus 354 ~ 354 (359)
+
T Consensus 240 ~ 240 (240)
T d1autc_ 240 D 240 (240)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Chymase II (mast cell proteinase II) species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.29 E-value=1.4e-10 Score=99.89 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=111.3
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc-
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d- 230 (359)
.--|.+|.|.....+.. ...|+|.+|+++ ||||+|||+.. ...+.+.. +.....+-+..+
T Consensus 10 ~~~Pw~v~i~~~~~~~~-------~~~C~GtLIs~~-~VLTaA~C~~~--~~~v~~g~~~~~~~~~~~~~~~v~~~~~~~ 79 (224)
T d3rp2a_ 10 HSRPYMAHLDIVTEKGL-------RVICGGFLISRQ-FVLTAAHCKGR--EITVILGAHDVRKRESTQQKIKVEKQIIHE 79 (224)
T ss_dssp TSCTTEEEEEEECTTSC-------EEEEEEEESSSS-EEEECGGGCCS--EEEEEESCSBTTSCCTTCEEEEEEEEEECT
T ss_pred CCCCCEEEEEEEeCCCC-------eEEEEEEEEcCC-eeEeccccccc--ccEEEeccccccCccccceeeeEEEEEecc
Confidence 34578899876543221 236999999987 99999999865 44555422 223333333332
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC----C
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP----G 291 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~----~ 291 (359)
..+|||||+++.+.. ...++++.. ...+..+......||...... .+....+..+....+ .
T Consensus 80 ~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 159 (224)
T d3rp2a_ 80 SYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY 159 (224)
T ss_dssp TCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTTC
T ss_pred cccccccccceeeeeecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCCCccceeeEEEEEccCHHHhhhccc
Confidence 367999999997643 344555533 345667888999988642221 222223333322221 1
Q ss_pred cccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHH
Q 018198 292 RLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 292 ~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~ 352 (359)
......++.. ...|.|+|||||+ .++.++||.+++.... ..-..+..+...++|+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~c~~d~G~Pl~-~~~~l~Gi~S~g~~~~-~~p~vyt~v~~~~~WI~~vi 223 (224)
T d3rp2a_ 160 YEYKFQVCVGSPTTLRAAFMGDSGGPLL-CAGVAHGIVSYGHPDA-KPPAIFTRVSTYVPWINAVI 223 (224)
T ss_dssp CCTTTEEEECCTTSCCBCCTTTTTCEEE-ETTEEEEEEEECCTTC-CSCEEEEEHHHHHHHHHHHH
T ss_pred ccccceeeeccCcccccCcCCCcCCeEE-EcCEEEEEEEECCCCC-CCCeEEEEHHHHHHHHHHHh
Confidence 1222334432 2357899999999 5799999999986433 23355788999999998865
|
| >d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Factor D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.9e-11 Score=103.18 Aligned_cols=178 Identities=18% Similarity=0.198 Sum_probs=106.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC---------CcEEEEEEEEEc
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD---------QSTFYAQVVGHD 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~---------g~~~~~~v~~~d 230 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. .+.+.... ........+..+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~ 78 (228)
T d1bioa_ 11 ARPYMASVQLNG-----------AHLCGGVLVAEQ-WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPH 78 (228)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGGGGCSSSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCCcEEEEEECC-----------cEEEEEEEEeCC-EEEECceeeeccccceeeeeccccccccCCcceeeccceeeeee
Confidence 467888887522 237999999987 9999999997543 33333211 123333333333
Q ss_pred -------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeeccc-----
Q 018198 231 -------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREI----- 289 (359)
Q Consensus 231 -------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~----- 289 (359)
..+|+|||+++.+.. .+.+..+.. ......+......||..... .......+....+..
T Consensus 79 ~~y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (228)
T d1bioa_ 79 PDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT 158 (228)
T ss_dssp TTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTCCCCSBCEEEEEEEECHHHHHSTT
T ss_pred ecccCCCcccceehhhccccceeeeEEeeecccccccccccCceEEEecceeecCCCCCCCcceEEEEEEeCHHHHhhhh
Confidence 346999999987643 233444432 34456788888999864321 122333333332111
Q ss_pred -CCcccccEEEE----cccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHH
Q 018198 290 -PGRLIQGVIQI----DASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 290 -~~~~~~~~i~~----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~ 352 (359)
.........+. ....+.|+|||||+ .++.|+||.+++.... ...-..+.-+...++|+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~gdsG~Pl~-~~~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i 227 (228)
T d1bioa_ 159 HHDGAITERLMCAESNRRDSCKGDSGGPLV-CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227 (228)
T ss_dssp TTTTCCCTTEEEECCSSCBCCTTTTTCEEE-ETTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred cccccccccceeecccCCCcccCCcCccEE-EcCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence 01111111121 23568899999999 5789999999875432 222356778888888888764
|
| >d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Venom serine protease species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]
Probab=99.29 E-value=1.4e-10 Score=100.54 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=110.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcE-------EEE-EEEEE----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQST-------FYA-QVVGH---- 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~-------~~~-~v~~~---- 229 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.....+....+.. ... .....
T Consensus 11 e~Pw~v~i~~~~-----------~~~C~G~LIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
T d1op0a_ 11 EHRFLVAFFNTT-----------GFFCGGTLINPE-WVVTAAHCDSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKN 78 (234)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCSSCEEEESCSCSSSCCTTCEEECEEEEEECTTCC
T ss_pred CcCcEEEEEECC-----------cEEEEEEEEcCC-EEEECceeCCCCCccccceeeccccCCcceeeeeeeeccccccc
Confidence 367788886421 236999999987 999999999887766665533221 111 11111
Q ss_pred ---cCCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeeccc-----CCc
Q 018198 230 ---DQVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDREI-----PGR 292 (359)
Q Consensus 230 ---d~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~~-----~~~ 292 (359)
....||||||++.+.. .+.|+.|.. .....|+.+.+.||..... .......+....... ...
T Consensus 79 ~~~~~~~DiaLl~L~~~v~~~~~i~picl~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 157 (234)
T d1op0a_ 79 NNEVLDKDIMLIKLDKPISNSKHIAPLSLPS-SPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPEL 157 (234)
T ss_dssp TTCTTSSCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC
T ss_pred cccccchhhhhhhcCCceeccceeecccccc-cCcccceEEEEeeeccccccccccccccccccceEechHHhcccccCc
Confidence 1467999999987543 456777754 4456799999999864321 112222222221111 010
Q ss_pred -ccccEEEE-----cccCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 293 -LIQGVIQI-----DASVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 293 -~~~~~i~~-----~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
........ ....+.|+|||||+ .++.++||.+++.... ...-+.+..+...++|+++-++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~G~Pl~-~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~ 226 (234)
T d1op0a_ 158 LAEYRTLCAGIVQGGKDTCGGDSGGPLI-CNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAG 226 (234)
T ss_dssp CTTSCEEEEECTTCCCBCCTTCTTCEEE-ETTEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHT
T ss_pred ceeeeeeeecccccccccccCCCCceEE-EcCEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence 11112222 22467899999999 5799999999875322 12235678889999999888764
|
| >d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Elastase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.27 E-value=2.9e-10 Score=98.52 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=111.9
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc---
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD--- 230 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d--- 230 (359)
.|.+|.|....... ....|+|.+|+++ +|||+|||+.+.....+.+.. ...+..+....+
T Consensus 12 ~Pw~v~i~~~~~~~-------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (241)
T d1brup_ 12 WPWQVSLQYDSSGQ-------WRHTCGGTLVDQS-WVLTAAHCISSSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDW 83 (241)
T ss_dssp STTEEEEEEEETTE-------EEEEEEEEEEETT-EEEECGGGCCTTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTC
T ss_pred CCcEEEEEEcCCCc-------ceEEeEEEEEeCC-EEEECeEeeecccccceeeeccceeccCCCccccceeeeEEEeee
Confidence 57889887643211 1237999999987 999999999888776666632 223334433333
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC-----
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP----- 290 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~----- 290 (359)
.+.|||||+++.+.. ...++.+.. ...+..+....+.||...... ......+..+....+
T Consensus 84 ~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 163 (241)
T d1brup_ 84 NSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGW 163 (241)
T ss_dssp CTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTSTTT
T ss_pred eeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCCcCCCcceEEEEEEeCHHHhCcccc
Confidence 245799999986432 345555433 234567889999998653321 222333333221110
Q ss_pred --CcccccEEEEc----ccCCCCCccceeecC--CC--eEEEEEeeecCC---CcceeEEEEehHHHHHHHHHHHhc
Q 018198 291 --GRLIQGVIQID----ASVNLGNSGGPLLDS--SG--SLIGVNTFITSG---AFSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 --~~~~~~~i~~~----~~~~~G~SGgPl~~~--~G--~viGi~~~~~~~---~~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
........+.. ...|.|+|||||+-. +| .|+||.+++... ....-..+.-+...++|+++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~ 240 (241)
T d1brup_ 164 WGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIAN 240 (241)
T ss_dssp TGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred ccccccccceeecCCCCccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence 11111233332 246889999999832 34 699999987632 112235578888899999988764
|
| >d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: HL collagenase species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]
Probab=99.27 E-value=7.2e-11 Score=102.12 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=111.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC------CcEEEEEEEEEcC----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD------QSTFYAQVVGHDQ---- 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~------g~~~~~~v~~~d~---- 231 (359)
--|..|.|.....+.. ...|+|.+|+++ ||||+|||+.......+.... ......+-+..++
T Consensus 11 e~Pw~v~i~~~~~~~~-------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~v~~~~~~~~~~~~~~~v~~i~~hp~y~~ 82 (230)
T d2hlca_ 11 LFPYQAGLDITLQDQR-------RVWCGGSLIDNK-WILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNP 82 (230)
T ss_dssp TSTTEEEEEEEETTSC-------EEEEEEEEEETT-EEEECHHHHTTEEEEEEEESCSBTTCCSEEEECSEEEECTTCBT
T ss_pred CCCCEEEEEEEecCCC-------eeEEEEEEEeCC-EEEEeeecccccccceeecccceecccccceeeEeEEeeecccc
Confidence 3677888876433221 336999999987 999999999887777777632 2234433344443
Q ss_pred ---CCCEEEEEEcCCCC--CccceEecCC---CCCCCCCEEEEEecCCCCCC--ceeEeEEeeeeccc-----C-Ccccc
Q 018198 232 ---VNDLAVLHIDAPNH--ELRPIHVSVS---ADLRVGKKIYAIGHPLGWSF--TCTTGVISALDREI-----P-GRLIQ 295 (359)
Q Consensus 232 ---~~DlAll~v~~~~~--~~~~~~l~~~---~~~~~G~~v~~iG~p~~~~~--~~~~G~vs~~~~~~-----~-~~~~~ 295 (359)
.+|||||+++.... .+.++.|... .....+..+...||...... ......+....... . .....
T Consensus 83 ~~~~~DiALl~L~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 162 (230)
T d2hlca_ 83 DTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVE 162 (230)
T ss_dssp TTTBTCCEEEECSCCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCCCBCEEEEEEEECHHHHHTTSCTTSSCT
T ss_pred cccccceeEEEeecccccccceeEEeeccccccccccceeEEEEeeccccccchhhheeeeccccchhhhhccccccccc
Confidence 35999999976432 3456665322 23456788888888654332 22222222222111 1 11122
Q ss_pred cEEEEc----ccCCCCCccceeecC-CCeEEEEEeeecCC--CcceeEEEEehHHHHHHHHHHH
Q 018198 296 GVIQID----ASVNLGNSGGPLLDS-SGSLIGVNTFITSG--AFSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 296 ~~i~~~----~~~~~G~SGgPl~~~-~G~viGi~~~~~~~--~~~~~~~aip~~~i~~~l~~l~ 352 (359)
..++.+ ...+.|+||||++.. +..++||.++.... ....-..+..+....+++++.+
T Consensus 163 ~~~~~~~~~~~~~~~gdsGgp~~~~~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~ 226 (230)
T d2hlca_ 163 STICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226 (230)
T ss_dssp TEEEECCTTSCBCCTTCTTCEEEEGGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHH
T ss_pred cceEeccccCccccccccCCCeEECCCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHh
Confidence 344443 246789999999843 34599999876522 2222355778888888888754
|
| >d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Factor B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.6e-11 Score=110.49 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=103.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEecCC-cEEEEEEEEEcCC-----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFSDQ-STFYAQVVGHDQV----- 232 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~~g-~~~~~~v~~~d~~----- 232 (359)
-.|.+|.|.....+.. ...|+|.||+++ ||||+|||+.... .+.|.+.+. +.+..+.+..+++
T Consensus 15 e~PW~v~i~~~~~~~~-------~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~v~~g~~~~~~~v~~i~~Hp~y~~~~ 86 (287)
T d1rrka1 15 KQPWQAKISVIRPSKG-------HESCMGAVVSEY-FVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNING 86 (287)
T ss_dssp HSTTEEEEEECC--CC-------CEEEEEEECSSS-EEEECGGGCCTTCCGGGEEEEETTCSSCEEEEEEEECTTCCTTT
T ss_pred CCCCEEEEEEEECCCC-------cEEEEEEEecCC-EEEEChhheecCCCcceEEEEeCCeeceeeeEEEEecCCccccc
Confidence 5688898876543322 237999999987 9999999996433 477877553 3355555555543
Q ss_pred -----------CCEEEEEEcCCCC---CccceEecCCC------CCC-------------CCCEEEEEecCCCCCCceeE
Q 018198 233 -----------NDLAVLHIDAPNH---ELRPIHVSVSA------DLR-------------VGKKIYAIGHPLGWSFTCTT 279 (359)
Q Consensus 233 -----------~DlAll~v~~~~~---~~~~~~l~~~~------~~~-------------~G~~v~~iG~p~~~~~~~~~ 279 (359)
+|||||+++.+.. .+.|+.|+... ... .+........+. .......
T Consensus 87 ~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 165 (287)
T d1rrka1 87 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE-EEKKLTR 165 (287)
T ss_dssp TGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEE-SSSCEEE
T ss_pred cccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCcccccccc-CCceeEE
Confidence 5999999987542 45666664211 000 111111111110 0111111
Q ss_pred eEEeeee--c--------ccC----------CcccccEEEEc-------ccCCCCCccceeecC-CC--eEEEEEeeecC
Q 018198 280 GVISALD--R--------EIP----------GRLIQGVIQID-------ASVNLGNSGGPLLDS-SG--SLIGVNTFITS 329 (359)
Q Consensus 280 G~vs~~~--~--------~~~----------~~~~~~~i~~~-------~~~~~G~SGgPl~~~-~G--~viGi~~~~~~ 329 (359)
..+.... . ... ......+++.. ...|.|||||||+-. +| .++||+|++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~~~~~lvGI~S~G~~ 245 (287)
T d1rrka1 166 KEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVV 245 (287)
T ss_dssp EEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESC
T ss_pred EEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEecCCeEEEEEEEEecCC
Confidence 1111111 0 000 00112345542 235789999999843 33 39999998652
Q ss_pred CC-----------cceeEEEEehHHHHHHHHHHHhcCc
Q 018198 330 GA-----------FSGIGFALPIDTVRGIVDQLVKFSR 356 (359)
Q Consensus 330 ~~-----------~~~~~~aip~~~i~~~l~~l~~~g~ 356 (359)
.. .....++..+...++|+++.++.-.
T Consensus 246 ~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~~ 283 (287)
T d1rrka1 246 DVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDED 283 (287)
T ss_dssp CCC--------CCTTCEEEEEEGGGGHHHHHHHTTTSS
T ss_pred cCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCCC
Confidence 11 1123567889999999999887543
|
| >d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Tonin species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.26 E-value=4.2e-10 Score=97.31 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=101.2
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCC-----c--EEEEEEE------------------EEcCCCCEEEEEEc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-----S--TFYAQVV------------------GHDQVNDLAVLHID 241 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g-----~--~~~~~v~------------------~~d~~~DlAll~v~ 241 (359)
.|+|.+|+++ ||||+|||+.+.....+...+. . .....-. ..+...|+|||++.
T Consensus 23 ~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~ 101 (235)
T d1tona_ 23 LCGGVLIDPS-WVITAAHCYSNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLS 101 (235)
T ss_dssp EEEEEEEETT-EEEECGGGCCSCCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEES
T ss_pred EEEEEEecCC-EEEECceecCCCCceEEeeeeeecCCCceeEeeeeeeeeeeeceeeeeeecccccccccccceeEEEec
Confidence 7999999987 9999999998765544433111 0 1111000 01245699999998
Q ss_pred CCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC------ceeEeEEeeeecccC-----CcccccEEEEc-----c
Q 018198 242 APNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF------TCTTGVISALDREIP-----GRLIQGVIQID-----A 302 (359)
Q Consensus 242 ~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~------~~~~G~vs~~~~~~~-----~~~~~~~i~~~-----~ 302 (359)
.+.. .+.++.+. ..........++.||...... ....-.+..+.+..+ .......++.. .
T Consensus 102 ~~v~~~~~i~~i~l~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~ 180 (235)
T d1tona_ 102 EPADITGGVKVIDLP-TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGK 180 (235)
T ss_dssp SCCCCCSSCCCCCCC-CSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGSTTGGGGEEEEECTTCSC
T ss_pred CccccCCcccccccc-cccccccceeEEEEccccccccccccccceeeeeeeeCHHHHHHHhCCCCCCCceEeCcCCCCc
Confidence 7532 45666664 345566788889998642211 111211222211111 22223345542 2
Q ss_pred cCCCCCccceeecCCCeEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 303 SVNLGNSGGPLLDSSGSLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 303 ~~~~G~SGgPl~~~~G~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
..|.|+|||||+ .++.++||.+++.... ...-..+..+...++|+++.+++
T Consensus 181 ~~c~gdsG~Pl~-~~~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i~~ 233 (235)
T d1tona_ 181 DTCAGDSGGPLI-CDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE 233 (235)
T ss_dssp BCCTTCTTCEEE-ETTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred cccCCCcCCeEE-EcCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHHH
Confidence 367899999999 4789999999876322 22335678899999999998874
|
| >d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Hepatocyte growth factor, HGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.6e-10 Score=95.92 Aligned_cols=183 Identities=12% Similarity=0.085 Sum_probs=110.5
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCC--CeEEEEecCC-----------cEEEEEEE-E
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGA--STVKVSFSDQ-----------STFYAQVV-G 228 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~--~~~~v~~~~g-----------~~~~~~v~-~ 228 (359)
-|..|+|.... ...|+|.+|+++ ||||+|||+.+. ..+.|.+... +.+...-. .
T Consensus 11 ~~w~vsi~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
T d1si5h_ 11 IGWMVSLRYRN-----------KHICGGSLIKES-WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY 78 (234)
T ss_dssp CTTEEEEEESS-----------SEEEEEEEEETT-EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEE
T ss_pred cCeEEEEEECC-----------cEEEEEEEEeCC-EEEECcCccCCCCCccceEEEEeecccccccceeEEEEeeccccC
Confidence 37788886421 226999999987 999999999754 4566666321 11222222 2
Q ss_pred EcCCCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC----CCceeEeEEeeeecccC-------Ccc
Q 018198 229 HDQVNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW----SFTCTTGVISALDREIP-------GRL 293 (359)
Q Consensus 229 ~d~~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~----~~~~~~G~vs~~~~~~~-------~~~ 293 (359)
....+|||||+++.+.. .+.++.|... .....+..+...|+.... ........+....+... ...
T Consensus 79 ~~~~~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T d1si5h_ 79 GPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTL 158 (234)
T ss_dssp CSSTTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSSCCCBCEEEEEEEECGGGTCC-------C
T ss_pred CCcccceEEEeeccCccccccccccccccccccCCcceeEEEecccccccccccceeEEEEeeccchhHhhhhhcccccc
Confidence 23456999999987532 3456666433 334457778888875432 22223333332222211 011
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCC---eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhcCcc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSG---SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKFSRY 357 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~g~v 357 (359)
....++.. ...+.|+|||||+..++ .|+||.+++...+. ..-..+..+...+.|+++.+++-.+
T Consensus 159 ~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~~~~ 231 (234)
T d1si5h_ 159 NESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKV 231 (234)
T ss_dssp CTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSCCC
T ss_pred CCccEEEccCCcCCCCCcCccccceEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhcCCC
Confidence 12445542 35788999999995432 39999998763222 2235677899999999999876543
|
| >d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Trypsin(ogen) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=3.4e-10 Score=97.08 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=108.9
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC-----C--cEEEEEEEEEc----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD-----Q--STFYAQVVGHD---- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~-----g--~~~~~~v~~~d---- 230 (359)
.-|.+|.|.. + ...|+|.+|+++ ||||+|||+.+.....+...+ + .......+..+
T Consensus 11 ~~Pw~v~l~~----~--------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (223)
T d1hj9a_ 11 TVPYQVSLNS----G--------YHFCGGSLINSQ-WVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYN 77 (223)
T ss_dssp SSTTEEEEES----S--------SEEEEEEEEETT-EEEECGGGCCSSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCC
T ss_pred CCCeEEEEEC----C--------CEEEEEEEeeCC-EEEeCeeECCCcCcceecccccccccceeeeeceeeEEeccccc
Confidence 4577888842 1 236999999987 999999999877665543211 1 12222222222
Q ss_pred ---CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecc-----cCCcc
Q 018198 231 ---QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDRE-----IPGRL 293 (359)
Q Consensus 231 ---~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~-----~~~~~ 293 (359)
..+|||||+++.+.. ...++.+.. .....+..+.+.||..... ..+..-.+..+... .....
T Consensus 78 ~~~~~~diAll~l~~~~~~~~~~~p~cl~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 156 (223)
T d1hj9a_ 78 SNTLNNDIMLIKLKSAASLNSRVASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI 156 (223)
T ss_dssp TTTCTTCCEEEEESSCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEECCCHHHHHHHSTTTC
T ss_pred cccccchhhhhhcccceeeeeeeecccccc-ccccccceEEEEeeccccCCCCCCCccceEEEEeecCHHHHHHHhCCcc
Confidence 367999999987543 456667753 4456788899999854211 12333333333211 11111
Q ss_pred cccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 294 IQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 294 ~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
..+.++.. ...+.|+|||||+. +++++||.+++..... ..-..+..+...++|+++.++.
T Consensus 157 ~~~~~c~~~~~~~~~~~~gd~g~pl~~-~~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~ 222 (223)
T d1hj9a_ 157 TSNMFCAYGLEGKGDSCQGDSGGPVVC-SGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIAS 222 (223)
T ss_dssp CTTEEECCCCCCCCCCCTTCTTCEEEE-TTEEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHTT
T ss_pred cccceEEeecCCCcccccCCCCceeEE-eCEEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence 22333321 24678999999994 6899999998763221 2224578888899999887763
|
| >d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: (alpha,gamma)-chymotrypsin(ogen) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=3.6e-10 Score=98.88 Aligned_cols=184 Identities=16% Similarity=0.186 Sum_probs=110.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC----------CcEEEEEEEEEc-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD----------QSTFYAQVVGHD- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~----------g~~~~~~v~~~d- 230 (359)
--|.+|.|.....+. ....|+|.+|+++ ||||+|||+............ .......-+..+
T Consensus 24 ~~Pw~v~i~~~~~~~-------~~~~C~G~LIs~~-~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~ 95 (251)
T d1pytd_ 24 SWPWQISLQYLRDNT-------WRHTCGGTLITPN-HVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHE 95 (251)
T ss_dssp SSTTEEEEEEEETTE-------EEEEEEEEEEETT-EEEECGGGCCTTCCEEEEESCSBTTCSCCSSCEEEEEEEEEECT
T ss_pred CCCcEEEEEEEeCCC-------ceeEEeEEEEcCC-eEEEeeecccccccceeeeeeeeeecccCCCceEEeEEEEEEee
Confidence 468889987643221 1236999999987 999999999877655544321 122333333332
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecCCC-CCCCCCEEEEEecCCCCC-----CceeEeEEeeeec---cc---
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWS-----FTCTTGVISALDR---EI--- 289 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~---~~--- 289 (359)
..+|+||+++..+.. ...++.+.... ....+..+.+.||..... .......+..+.. ..
T Consensus 96 ~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 175 (251)
T d1pytd_ 96 KWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDW 175 (251)
T ss_dssp TCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHHTSTTT
T ss_pred eecccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCCcccceeceeeccccCHHHHhhhhc
Confidence 357999999987543 45566665433 345678888888864221 1112222221111 10
Q ss_pred -CCcccccEEEEc----ccCCCCCccceeecCC-C--eEEEEEeeecCC---CcceeEEEEehHHHHHHHHHHHh
Q 018198 290 -PGRLIQGVIQID----ASVNLGNSGGPLLDSS-G--SLIGVNTFITSG---AFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 290 -~~~~~~~~i~~~----~~~~~G~SGgPl~~~~-G--~viGi~~~~~~~---~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
........++.. ...|.|+|||||+-.+ | .|+||.+++... ....-..+.-+...++|+++.+|
T Consensus 176 ~~~~~~~~~~c~~~~~~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~~i~ 250 (251)
T d1pytd_ 176 WGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ 250 (251)
T ss_dssp TTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred ccccccCceEEeccCCCCccccCCCCCceEEeeCCEEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHHhcc
Confidence 111222345553 3578999999999532 2 699999886521 11223557788888999888765
|
| >d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Hepsin, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7.8e-11 Score=103.62 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=104.6
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCe----EEEEe-c------CCcEEEEEEEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAST----VKVSF-S------DQSTFYAQVVGH 229 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~----~~v~~-~------~g~~~~~~v~~~ 229 (359)
.-.|.+|.|.... ...|+|.+|+++ ||||+|||+.+... ..... . +........+..
T Consensus 10 ~e~Pw~v~I~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 77 (255)
T d1z8ga1 10 GRWPWQVSLRYDG-----------AHLCGGSLLSGD-WVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVY 77 (255)
T ss_dssp TSSTTEEEEEETT-----------EEEEEEEESSSS-EEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEE
T ss_pred CCcCcEEEEEECC-----------cEEEEEEEEeCC-EEEECceecCCCCCccceeeEeeeeecccCCccEEEEEEEEEE
Confidence 3467888886421 237999999987 99999999976432 11111 1 112222222222
Q ss_pred c-------------CCCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCC-----CCceeEeEEeeeec
Q 018198 230 D-------------QVNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDR 287 (359)
Q Consensus 230 d-------------~~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~ 287 (359)
+ ..+|||||+++.+.. ...++.|... .....+..+...||.... ........+..+..
T Consensus 78 h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~ 157 (255)
T d1z8ga1 78 HGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISN 157 (255)
T ss_dssp ETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECH
T ss_pred EeeeccccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCCcccceeEEEEEEEeCH
Confidence 2 237999999987532 3455555432 334568889999985321 12233333332321
Q ss_pred ccC-------CcccccEEEEc-----ccCCCCCccceeecCC-----C--eEEEEEeeecCCCcce-eEEEEehHHHHHH
Q 018198 288 EIP-------GRLIQGVIQID-----ASVNLGNSGGPLLDSS-----G--SLIGVNTFITSGAFSG-IGFALPIDTVRGI 347 (359)
Q Consensus 288 ~~~-------~~~~~~~i~~~-----~~~~~G~SGgPl~~~~-----G--~viGi~~~~~~~~~~~-~~~aip~~~i~~~ 347 (359)
..+ .....+.+... ...|.|+|||||+-.. + .|+||++++....... -..+.-+...++|
T Consensus 158 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~W 237 (255)
T d1z8ga1 158 DVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 237 (255)
T ss_dssp HHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHH
T ss_pred HHhhhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHH
Confidence 111 11112333332 2468999999999332 1 6999999886332222 2456788888888
Q ss_pred HHHHHhc
Q 018198 348 VDQLVKF 354 (359)
Q Consensus 348 l~~l~~~ 354 (359)
+++.++.
T Consensus 238 I~~~i~~ 244 (255)
T d1z8ga1 238 IFQAIKT 244 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
|
| >d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Enteropeptidase (enterokinase light chain) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.23 E-value=1.7e-10 Score=99.86 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=108.1
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEec----------CCcEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFS----------DQSTFYAQVV 227 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~----------~g~~~~~~v~ 227 (359)
--|.+|.|.... ...|+|.+|+++ ||||+||||.+.. ...+... .........+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 78 (235)
T d1ekbb_ 11 AWPWVVALYFDD-----------QQVCGASLVSRD-WLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQI 78 (235)
T ss_dssp SCTTEEEEEETT-----------EEEEEEEECSSS-EEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCTTCEEEEEEEE
T ss_pred CCCcEEEEEECC-----------CEEEEEEEEcCC-EEEEChhhccCCCCCccceeeeecccccccccCcceeEeeeeee
Confidence 457888886432 236999999987 9999999996532 2333331 1123334444
Q ss_pred EEcC-------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeeccc--
Q 018198 228 GHDQ-------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREI-- 289 (359)
Q Consensus 228 ~~d~-------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~-- 289 (359)
..++ .+||||++++.+.. ...|+.|... .....++.+.+.||...... ......+.......
T Consensus 79 ~~hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (235)
T d1ekbb_ 79 VINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQ 158 (235)
T ss_dssp EECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEBCCHHHHH
T ss_pred eecccccccCccchhhhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCCcccccceeeEEEEecHHHhc
Confidence 4443 46999999987533 4567777532 34567889999999753221 12222222222110
Q ss_pred ----CCcccccEEEEc-----ccCCCCCccceeecCCC---eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHH
Q 018198 290 ----PGRLIQGVIQID-----ASVNLGNSGGPLLDSSG---SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 290 ----~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~ 352 (359)
........++.. ...|.|+||||++-.++ .|+||.+++...+. ..-..++.+...++|+++.+
T Consensus 159 ~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i 234 (235)
T d1ekbb_ 159 QQMPEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFL 234 (235)
T ss_dssp HHCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTC
T ss_pred ccccccccCcccEEEEcCCCCcccccCCCCCccEEccCCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhh
Confidence 011122344442 23688999999995433 39999999764332 22356788888888887654
|
| >d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Coagulation factor XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.1e-10 Score=97.59 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=109.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEec---------CCcEEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFS---------DQSTFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~---------~g~~~~~~v~~~ 229 (359)
.-|.+|.|....... ...|+|.+|+++ ||||+|||+.... .+.+... ....+..+.+..
T Consensus 11 ~~Pw~v~i~~~~~~~--------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (237)
T d1xx9a_ 11 EWPWQVTLHTTSPTQ--------RHLCGGSIIGNQ-WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIII 81 (237)
T ss_dssp SSTTEEEEEEESSSE--------EEEEEEEEEETT-EEEECGGGGTTCSCGGGEEEEESCSBGGGCCTTCCCEEEEEEEE
T ss_pred CCCcEEEEEECCCCc--------cEEEEEEEEeCC-EEEeCeEeeecccCccceeeecccccccccccceEEEEeeEEEE
Confidence 457888887543221 236999999987 9999999996543 3444442 123444444444
Q ss_pred c-------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecc-----
Q 018198 230 D-------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDRE----- 288 (359)
Q Consensus 230 d-------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~----- 288 (359)
+ ..+|||||+++.+.. ...++.+.. .........+.+.||..... .......+....+.
T Consensus 82 h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 161 (237)
T d1xx9a_ 82 HDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR 161 (237)
T ss_dssp CTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHHHH
T ss_pred ecccccccccceeEEEEeccccccccccceEEecccccccccccccEEEEeecccccccCCCccEEEEEEEeCHHHHhhh
Confidence 3 456999999987543 344555533 23344566788899874321 12222222222211
Q ss_pred cCCc-ccccEEEEc-----ccCCCCCccceeecCCC---eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHHHh
Q 018198 289 IPGR-LIQGVIQID-----ASVNLGNSGGPLLDSSG---SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 289 ~~~~-~~~~~i~~~-----~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~~ 353 (359)
.... .....++.. ...|.|+||||++..++ .|+||.+++...+ ...-..+..+...++|+++-+|
T Consensus 162 ~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~ 236 (237)
T d1xx9a_ 162 YRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236 (237)
T ss_dssp TTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHC
T ss_pred hcCCCCCCceEEEecCCCCcccccCCccceeEEecCCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHC
Confidence 1111 122344442 24788999999996433 6999999876322 2223557888888888877544
|
| >d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Granzyme B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.3e-11 Score=106.80 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=107.2
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc-
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD- 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d- 230 (359)
.--|.+|.|.....+. ...|+|.||+++ ||||+|||+.... .+.+.. .......-+..+
T Consensus 10 ~~~Pw~v~l~~~~~~~--------~~~C~GtLIs~~-~VLTaAhC~~~~~--~v~~g~~~~~~~~~~~~~~~v~~i~~~~ 78 (227)
T d1fq3a_ 10 HSRPYMAYLMIWDQKS--------LKRCGGFLIQDD-FVLTAAHCWGSSI--NVTLGAHNIKEQEPTQQFIPVKRPIPHP 78 (227)
T ss_dssp TSCTTEEECCEEETTE--------EECCEEEEEETT-EEEECGGGCCSEE--EEEESCSBTTTTCTTCEEEEEEEECCCT
T ss_pred CCCCCEEEEEEEcCCC--------cEEEEEEEEeCC-EEEeCEeeccccc--cceeccccccccccccEEEEEEEEEecc
Confidence 3457788876543221 236999999987 9999999997543 344321 122333323333
Q ss_pred ------CCCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC-----
Q 018198 231 ------QVNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP----- 290 (359)
Q Consensus 231 ------~~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~----- 290 (359)
..+|||||+++.+.. .+.++.|.. ......+..+.+.||..... .......+..+....+
T Consensus 79 ~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 158 (227)
T d1fq3a_ 79 AYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLR 158 (227)
T ss_dssp TCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTSCCCSBCCBCEEECCCHHHHTTTCT
T ss_pred cCCCCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcccccccceEEEEEEEcHHHhhhhhc
Confidence 256999999987632 345555532 34556788999999864321 1222333333321111
Q ss_pred Cccccc-EEE-----EcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 291 GRLIQG-VIQ-----IDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 ~~~~~~-~i~-----~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
...... ... .+...+.|+|||||+ .++.++||.+++..... .-..+.-+...++|+++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~-~~~~l~GI~s~g~~~~~-~p~vyt~v~~y~~WI~~~i~ 225 (227)
T d1fq3a_ 159 HYYDSTIELCVGDPEIKKTSFKGDSGGPLV-CNKVAQGIVSYGRNNGM-PPRACTKVSSFVHWIKKTMK 225 (227)
T ss_dssp TTCCTTTEECCSCTTSSCBCCTTCTTCBCB-SSSSCCCEECCCCTTSC-SCCCEECHHHHHHHHHHHTT
T ss_pred ccccccceeeeeccccccccccCCCCceEE-EeCEEEEEEEEcCCCCC-CCcEEEEHHHHHHHHHHHHH
Confidence 000000 111 123457799999999 57899999998763322 12346788889998888765
|
| >d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Elastase species: Salmon (Salmo salar) [TaxId: 8030]
Probab=99.21 E-value=1.8e-10 Score=99.66 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=107.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC-------c--EEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ-------S--TFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g-------~--~~~~~v~~~d-- 230 (359)
.-|..|.|.....+.. ...|+|.+|+++ ||||+|||+.+.....+.+... . ..........
T Consensus 11 ~~Pw~v~i~~~~~~~~-------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (236)
T d1elta_ 11 SWPWQISLQYKSGSSY-------YHTCGGSLIRQG-WVMTAAHCVDSARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSG 82 (236)
T ss_dssp SSTTEEEEEEEETTEE-------EEEEEEEEEETT-EEEECHHHHSSCCCEEEEESCSBTTSCCSCCEEECEEEEEECTT
T ss_pred CCCcEEEEEEccCCcc-------eeEEEEEEEeCC-EEEECeeeccccccceeeccceeeecccCCceeeeeeEEEEeee
Confidence 3578888866442211 236999999987 9999999998887777665322 1 1222222222
Q ss_pred -------CCCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC----
Q 018198 231 -------QVNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP---- 290 (359)
Q Consensus 231 -------~~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~---- 290 (359)
..+|||||+++.+.. ...++.|... .....++.+++.||...... ......+..+.+...
T Consensus 83 ~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (236)
T d1elta_ 83 WNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSG 162 (236)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTSTT
T ss_pred ecccccccCceEEEeeccCcceeecccceeecCchhcccCCCceEEEecccccccCcccCccceeeeeEEEcHHHhhhhc
Confidence 246999999987543 3556666543 33456778999998754321 222222222221110
Q ss_pred ---CcccccEEEE---cccCCCCCccceeecC-CC--eEEEEEeeecCC-C-c-ceeEEEEehHHHHHHHHHH
Q 018198 291 ---GRLIQGVIQI---DASVNLGNSGGPLLDS-SG--SLIGVNTFITSG-A-F-SGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 291 ---~~~~~~~i~~---~~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~-~-~-~~~~~aip~~~i~~~l~~l 351 (359)
.......++. ....|.|+|||||+.. +| .|+||.++.... . . ..-..+.-+...++|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~v 235 (236)
T d1elta_ 163 WWGSTVKTTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI 235 (236)
T ss_dssp TTGGGSCTTEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred ccccccceeeeecCCccccccccccccceEEEECCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHh
Confidence 0011122222 1246789999999854 33 599999976421 1 1 1124567888888888875
|
| >d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Complement C1S protease, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4e-10 Score=99.12 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=106.4
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC----------CcEEEEEEEEEc
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD----------QSTFYAQVVGHD 230 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~----------g~~~~~~v~~~d 230 (359)
.--|.+|.|.. ..|+|.+|+++ ||||+|||+.+.....+.+.. ++.+..+-+..+
T Consensus 23 ~~~Pw~v~l~~--------------~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~h 87 (259)
T d1elva1 23 KNFPWQVFFDN--------------PWAGGALINEY-WVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIH 87 (259)
T ss_dssp GGSTTEEEEET--------------TEEEEEEEETT-EEEECHHHHTTCSSCCEECSCSBCC-------CEECEEEEEEC
T ss_pred CCcceEEEeCC--------------ceEEEEEEeCC-EEEecccccccccceeEEeeeeeeecccccccccccceeEeec
Confidence 34677887731 26999999987 999999999877665555422 233444444444
Q ss_pred C--------------CCCEEEEEEcCCCC---CccceEecC---CCCCCCCCEEEEEecCCCCC----CceeEeEEeeee
Q 018198 231 Q--------------VNDLAVLHIDAPNH---ELRPIHVSV---SADLRVGKKIYAIGHPLGWS----FTCTTGVISALD 286 (359)
Q Consensus 231 ~--------------~~DlAll~v~~~~~---~~~~~~l~~---~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~ 286 (359)
+ .+||||||++.+.. .+.++.+.. ......+...++.||..... .....-.+....
T Consensus 88 p~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1elva1 88 PGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAP 167 (259)
T ss_dssp TTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCSSCSBCEEEEEEEEC
T ss_pred ceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccccccccccceeeEec
Confidence 3 35999999987542 344444432 22456788899999864321 111221121111
Q ss_pred ---cc--cC--------Cc-ccccEEEEc----ccCCCCCccceeecCC--C----eEEEEEeeecCCCcceeEEEEehH
Q 018198 287 ---RE--IP--------GR-LIQGVIQID----ASVNLGNSGGPLLDSS--G----SLIGVNTFITSGAFSGIGFALPID 342 (359)
Q Consensus 287 ---~~--~~--------~~-~~~~~i~~~----~~~~~G~SGgPl~~~~--G----~viGi~~~~~~~~~~~~~~aip~~ 342 (359)
.. .. .. .....++.. ...|.|+|||||+-.. + .++||.+++..- ..-..+.-+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c--~~p~vft~V~ 245 (259)
T d1elva1 168 LRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC--GTYGLYTRVK 245 (259)
T ss_dssp HHHHHTC----------CCCCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSST--TSEEEEEEGG
T ss_pred hhhceeeeecccccccccceeecceeeccCCCCCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCC--CCceEEeEHH
Confidence 00 00 00 111233332 3578999999998432 2 499999987532 2235678889
Q ss_pred HHHHHHHHHHhc
Q 018198 343 TVRGIVDQLVKF 354 (359)
Q Consensus 343 ~i~~~l~~l~~~ 354 (359)
..++|+++.++.
T Consensus 246 ~~~~WI~~~i~~ 257 (259)
T d1elva1 246 NYVDWIMKTMQE 257 (259)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
|
| >d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Coagulation factor Xa, protease domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.2e-10 Score=97.72 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=104.2
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC---------CcEEEEEEEEEc---
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD---------QSTFYAQVVGHD--- 230 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~---------g~~~~~~v~~~d--- 230 (359)
-|.+|.|.... ....|+|.+|+++ ||||+|||+.+.....+.... ........+..+
T Consensus 12 ~Pw~v~i~~~~----------~~~~C~GtlIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~ 80 (233)
T d2p3ub1 12 CPWQALLINEE----------NEGFCGGTILSEF-YILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF 80 (233)
T ss_dssp CTTEEEEECTT----------SCEEEEEEECSSS-EEEECGGGGGSCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTC
T ss_pred CCcEEEEEecC----------CCeEEEEEEEeCC-EEEECceecccccccccccccccccccCCCceeecceeEEEeecc
Confidence 57788875321 1236999999988 999999999877766655421 122334444433
Q ss_pred ----CCCCEEEEEEcCCCC---CccceEecCC----CCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC----
Q 018198 231 ----QVNDLAVLHIDAPNH---ELRPIHVSVS----ADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP---- 290 (359)
Q Consensus 231 ----~~~DlAll~v~~~~~---~~~~~~l~~~----~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~---- 290 (359)
..+|||||+++.+.. .+.++.+... ............|+...... ......+....+...
T Consensus 81 ~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 160 (233)
T d2p3ub1 81 TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS 160 (233)
T ss_dssp CTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHHC
T ss_pred cccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCccccccccccccccchhhhccc
Confidence 356999999987532 3344454321 11234555667776532221 222333332221111
Q ss_pred -CcccccEEEE-----cccCCCCCccceeecC-CC--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHh
Q 018198 291 -GRLIQGVIQI-----DASVNLGNSGGPLLDS-SG--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 -~~~~~~~i~~-----~~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~ 353 (359)
.....+.++. +...+.|+||||++.. ++ .|+||.+++...+. ..-..+.-+....+|+++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~ 233 (233)
T d2p3ub1 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233 (233)
T ss_dssp SSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred CceEeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence 1111223322 2346789999999954 22 39999998763222 223557788888888887654
|
| >d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Trypsin(ogen) species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]
Probab=99.18 E-value=1.8e-09 Score=93.44 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC-----eEEEEecC-------C--cEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS-----TVKVSFSD-------Q--STFYAQVV 227 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~-----~~~v~~~~-------g--~~~~~~v~ 227 (359)
.-|.+|.|........ ...|+|.+|+++ ||||+|||+.... .+.+.... . ......-+
T Consensus 11 ~~Pw~v~l~~~~~~~~-------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 82 (237)
T d2f91a1 11 EFPYQLSFQETFIGFS-------FHFCGASIYNEN-YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKI 82 (237)
T ss_dssp TSTTEEEEEEEETTEE-------EEEEEEEEEETT-EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEE
T ss_pred CCCcEEEEEEecCCCC-------cEEEEEEEEeCC-EEEECcccccccCCccccceeEEeeecccccccCcceeeeEEEE
Confidence 3567787765432211 226999999987 9999999996542 34444321 1 12333333
Q ss_pred EEc-------CCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC--
Q 018198 228 GHD-------QVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP-- 290 (359)
Q Consensus 228 ~~d-------~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~-- 290 (359)
..+ ..+|||||++..+.. ...++.+. ......+..+...||..... ..+....+..+....+
T Consensus 83 ~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~ 161 (237)
T d2f91a1 83 ILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP-EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA 161 (237)
T ss_dssp EECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCC-CTTCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred EEccccCCCccccceeeeccccccccCCceeeeecc-ccCcccccceeeccccccCCCCcCCchheEEEEEEeCHHHHhh
Confidence 333 256999999987533 34455553 34456788999999965321 1223333333321111
Q ss_pred ----CcccccEEEE-----cccCCCCCccceeecCCC---eEEEEEeeecCCCcc-eeEEEEehHHHHHHHHH
Q 018198 291 ----GRLIQGVIQI-----DASVNLGNSGGPLLDSSG---SLIGVNTFITSGAFS-GIGFALPIDTVRGIVDQ 350 (359)
Q Consensus 291 ----~~~~~~~i~~-----~~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~~-~~~~aip~~~i~~~l~~ 350 (359)
.......++. ....+.|+|||||+-.++ .|+||.+++...... .-..+..+...++|+++
T Consensus 162 ~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~ 234 (237)
T d2f91a1 162 DYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234 (237)
T ss_dssp HHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHH
T ss_pred hccCCcccCceeEeecCCCccccccCCCCCeEEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence 1111223333 224678999999995533 499999987633222 22456788888887764
|
| >d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Plasmin(ogen), catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.5e-10 Score=98.48 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=105.2
Q ss_pred cCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCe----EEEEecCC--------cEEE-EEEE
Q 018198 161 ENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAST----VKVSFSDQ--------STFY-AQVV 227 (359)
Q Consensus 161 ~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~----~~v~~~~g--------~~~~-~~v~ 227 (359)
..-|.+|.|.... + ...|+|.+|+++ ||||+|||+.+... ..+...+. .... ....
T Consensus 27 ~~~Pw~v~i~~~~---~-------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (247)
T d1rjxb_ 27 HSWPWQVSLRTRF---G-------MHFCGGTLISPE-WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLF 95 (247)
T ss_dssp TSSTTEEEEEETT---C-------CEEEEEEEEETT-EEEEEGGGGTTCSCGGGEEEEESCCBSSSCCTTCEEEEEEEEE
T ss_pred CCCCcEEEEEECC---C-------CEEEEEEEEeCC-EEEeeeEEEEeccCCccceeeccccccccccceeeEEeecccc
Confidence 4668999996421 1 237999999987 99999999975432 22222111 1111 1122
Q ss_pred EEcCCCCEEEEEEcCCCC---CccceEec-CCCCCCCCCEEEEEecCCCCC----CceeEeEEeeeecc---cC----Cc
Q 018198 228 GHDQVNDLAVLHIDAPNH---ELRPIHVS-VSADLRVGKKIYAIGHPLGWS----FTCTTGVISALDRE---IP----GR 292 (359)
Q Consensus 228 ~~d~~~DlAll~v~~~~~---~~~~~~l~-~~~~~~~G~~v~~iG~p~~~~----~~~~~G~vs~~~~~---~~----~~ 292 (359)
.....+||||++++.+.. ...++.+. .......+..++..||..... .......+..+... .. ..
T Consensus 96 ~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (247)
T d1rjxb_ 96 LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGR 175 (247)
T ss_dssp ECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC----CCCSBCEEEEEEEECHHHHTSTTTTTTC
T ss_pred CCCccchhhhhhhhcccccccccccccccccccccCCCceeeecccccccCCCCCCcceEEEEEEEchHHhhhhhccCcc
Confidence 234678999999986532 23344442 223445677788888754321 11122222222111 00 11
Q ss_pred ccccEEEEc-----ccCCCCCccceeecCC-C--eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 293 LIQGVIQID-----ASVNLGNSGGPLLDSS-G--SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 293 ~~~~~i~~~-----~~~~~G~SGgPl~~~~-G--~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.....++.. ...+.|+|||||+-.. | .|+||++++..... ..-..+.-+...++|+++.++.
T Consensus 176 ~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~WI~~~i~~ 246 (247)
T d1rjxb_ 176 VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 246 (247)
T ss_dssp SCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECTTSCCBBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred cccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence 223445542 2367799999999543 2 49999998753322 2235678899999999998874
|
| >d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Achromobacter protease species: Achromobacter lyticus, strain m497-1 [TaxId: 224]
Probab=99.17 E-value=2.4e-10 Score=101.21 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeC-----CCEEEecccccCCCC----eEEEEecCC--------------
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQ-----DGHIVTNYHVICGAS----TVKVSFSDQ-------------- 219 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~-----~g~vlT~~Hvv~~~~----~~~v~~~~g-------------- 219 (359)
.++|+.+.... ...|+|.+|+. +.||||||||+.+.. .+.+.+...
T Consensus 22 i~~v~~~~~~g-----------~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 90 (263)
T d1arba_ 22 IRAVGAYSKSG-----------TLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGA 90 (263)
T ss_dssp GGGEEEEEETT-----------EEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGS
T ss_pred EEEEEEEecCC-----------cEEEEEEEECCCCCCccceEEEchhhCCCCCCcceEEEEEEEeecccceeeeeeeeec
Confidence 35677775421 34799999973 249999999997643 233332110
Q ss_pred ------c--EEEEEEEEEcCCCCEEEEEEcCCCCCc-cceEecC-CCCCCCCCEEEEEecCCCCCCceeEeEEeeeeccc
Q 018198 220 ------S--TFYAQVVGHDQVNDLAVLHIDAPNHEL-RPIHVSV-SADLRVGKKIYAIGHPLGWSFTCTTGVISALDREI 289 (359)
Q Consensus 220 ------~--~~~~~v~~~d~~~DlAll~v~~~~~~~-~~~~l~~-~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~~ 289 (359)
. .....+.......|+||++++.+.... .+....- ......+ ....+..+......+............
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~Diall~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (263)
T d1arba_ 91 NGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFWAGWDRRDQNYP-GAIAIHHPNVAEKRISNSTSPTSFVAW 169 (263)
T ss_dssp CCCCCCCCEEECEEEEEEETTTTEEEEEESSCCCGGGCCEEBCEECCSCCCS-CEEEEECGGGCSCEEEEECSCCEEECT
T ss_pred ccCccceeeecchheeecCCCcceeeeecccccccccceeeeccCccccCCc-cccceeccccceeeeecccccchhhcc
Confidence 0 112244455678899999998643211 1111110 1111112 222222222211111111111111111
Q ss_pred CCcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeec
Q 018198 290 PGRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 290 ~~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
........++.. ...|+|+|||||++.+|+++|+++++.
T Consensus 170 ~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~g~~vGvvsgg~ 213 (263)
T d1arba_ 170 GGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGP 213 (263)
T ss_dssp TSSSCSSEEEEECCTTSCCCCTTCTTCEEECTTSCEEEEEEECS
T ss_pred CCCCCccEEEEEecCCCccccCCCCcceEEecCCCEEEEEEEEE
Confidence 121222334432 257899999999998999999999986
|
| >d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Prostate specific antigen (PSA kallikrein) species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.17 E-value=4.2e-10 Score=97.35 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=104.3
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEec------CCcEEE-EEEEEE-----
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS------DQSTFY-AQVVGH----- 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~------~g~~~~-~~v~~~----- 229 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.....+... +..... ......
T Consensus 11 e~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (237)
T d1gvza_ 11 SKPWQVAVYHQG-----------HFQCGGVLVHPQ-WVLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFD 78 (237)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEEEETT-EEEECGGGCCSSCEEEESCSBTTSCCTTCEEECEEEEEECTTSC
T ss_pred CCCcEEEEEECC-----------eEEEEEEEEeCC-EEEeChhhccCCCceeEeeeeeccccCcceeeeeeeEEeeeeee
Confidence 457788876421 237999999987 99999999987654433221 111111 111111
Q ss_pred -------------cCCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCCC--c----eeEeEEeeeec
Q 018198 230 -------------DQVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWSF--T----CTTGVISALDR 287 (359)
Q Consensus 230 -------------d~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~~--~----~~~G~vs~~~~ 287 (359)
+..+|||||+++.+.. ...++.+. ......++.+++.||...... . .....+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~ 157 (237)
T d1gvza_ 79 LSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLP-TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSN 157 (237)
T ss_dssp GGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCC-SSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECG
T ss_pred eeeeecccccCccccccceEEEEECCceeccccccccccc-ccccccceeEEEEeeeeeccccccccceeeEEEEEeecH
Confidence 1257999999987532 45666775 345567889999888643221 1 11112222222
Q ss_pred ccC-----CcccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCCc--ceeEEEEehHHHHHHHHHHHh
Q 018198 288 EIP-----GRLIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGAF--SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 288 ~~~-----~~~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~--~~~~~aip~~~i~~~l~~l~~ 353 (359)
..+ .......++.. ...+.|+|||||+ .++.++||.+++..... ..-..+..+...++|+++.++
T Consensus 158 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~-~~~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i~ 234 (237)
T d1gvza_ 158 EKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALI-CDGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234 (237)
T ss_dssp GGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEE-ETTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHH
T ss_pred HHHHhhcccccccccccceecccccccccCCCCCcEE-EcCEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHHH
Confidence 211 11111223322 2367899999999 57899999998753211 112346778888888887765
|
| >d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Elastase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.16 E-value=1.3e-09 Score=94.25 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=108.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC--------c-EEEEE--EEEE-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ--------S-TFYAQ--VVGH- 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g--------~-~~~~~--v~~~- 229 (359)
--|.+|.|.....+. ....|+|.+|+++ ||||+|||+.+.....+.+... . ..... .+..
T Consensus 11 ~~Pw~v~i~~~~~~~-------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
T d1gvkb_ 11 SWPSQISLQYRSGSS-------WAHTCGGTLIRQN-WVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPY 82 (240)
T ss_dssp SCTTEEEEEEEETTE-------EEEEEEEEEEETT-EEEECGGGGCSCCCEEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred CCCEEEEEEEecCCc-------cceEEEEEEEeCC-EEEECcccccccCCceEEeeeeeccccccccccccccceeEEEe
Confidence 347888887543211 1236999999987 9999999998887766665321 1 11111 1211
Q ss_pred ------cCCCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeeccc----C
Q 018198 230 ------DQVNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREI----P 290 (359)
Q Consensus 230 ------d~~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~----~ 290 (359)
...+|||||+++.+.. ...+..+... .....+......|+..... .......+....... .
T Consensus 83 ~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (240)
T d1gvkb_ 83 WNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSS 162 (240)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTSTT
T ss_pred ecccccccCcceeeecccCcccccccccceeeccCccccccccceeEeccccccccccccceeeEEEEEEEcHHHhccee
Confidence 1466999999986543 3445555332 3344566777777754221 112222222222110 0
Q ss_pred ---CcccccEEEEc----ccCCCCCccceeecC-CC--eEEEEEeeecCCC--c-ceeEEEEehHHHHHHHHHHHhc
Q 018198 291 ---GRLIQGVIQID----ASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA--F-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 ---~~~~~~~i~~~----~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~--~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.......++.. ...|.|+|||||+-. +| .|+||.++....+ . ..-..+.-+...++|+++.++.
T Consensus 163 ~~~~~~~~~~~c~~~~~~~~~c~gDsG~pl~~~~~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~ 239 (240)
T d1gvkb_ 163 YWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIAS 239 (240)
T ss_dssp TTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred ccCCccCCceEEecCCCCCccccCccccceEEEECCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhc
Confidence 11112345543 246789999999854 33 6999999876321 1 1125678899999999988763
|
| >d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Complement C1R protease, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.9e-10 Score=98.15 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=99.8
Q ss_pred eEEEEEEeCCCEEEecccccCCCC-------eEEEEecCC--------cEEEEEEEEEcC----------CCCEEEEEEc
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS-------TVKVSFSDQ--------STFYAQVVGHDQ----------VNDLAVLHID 241 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~-------~~~v~~~~g--------~~~~~~v~~~d~----------~~DlAll~v~ 241 (359)
.|+|.+|+++ +|||+|||+.+.. .+.|++... ..+..+-+..++ .+|||||+++
T Consensus 23 ~C~GtLIs~~-~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~ 101 (240)
T d2qy0b1 23 RGGGALLGDR-WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 101 (240)
T ss_dssp EEEEEEETTT-EEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEES
T ss_pred eEEEEEEcCC-EEEEChHhCCCcccccccccceeeeeeeccccccCCcceEEEEEEEeccccccccccccCCCceEEecC
Confidence 6999999987 9999999996532 245655321 122233333333 3599999998
Q ss_pred CCCC---CccceEecCCC-CCCCCCEEEEEecCCCCCC---ceeEeEEeeeecccC----------CcccccEEEE----
Q 018198 242 APNH---ELRPIHVSVSA-DLRVGKKIYAIGHPLGWSF---TCTTGVISALDREIP----------GRLIQGVIQI---- 300 (359)
Q Consensus 242 ~~~~---~~~~~~l~~~~-~~~~G~~v~~iG~p~~~~~---~~~~G~vs~~~~~~~----------~~~~~~~i~~---- 300 (359)
.+.. .+.++.+.... ....+...+..||...... ......+........ .....+.++.
T Consensus 102 ~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~ 181 (240)
T d2qy0b1 102 NSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 181 (240)
T ss_dssp SCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSSCCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTT
T ss_pred CccccccccceEEecccccccccCceeeecccccccccccccceEEEEEEcCHHHHHHHhhccccCCceecceEEeccCC
Confidence 7643 45666664332 3356888999998754332 222222222211110 1112244554
Q ss_pred -cccCCCCCccceeecCCC-----eEEEEEeeecCCCcceeEEEEehHHHHHHHHHHHh
Q 018198 301 -DASVNLGNSGGPLLDSSG-----SLIGVNTFITSGAFSGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 301 -~~~~~~G~SGgPl~~~~G-----~viGi~~~~~~~~~~~~~~aip~~~i~~~l~~l~~ 353 (359)
....+.|+|||||+-.++ .|+||.+++.... ..-..+.-+...++|+++-+|
T Consensus 182 ~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~-~~p~vft~v~~~~~WI~~~i~ 239 (240)
T d2qy0b1 182 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCS-RGYGFYTKVLNYVDWIKKEME 239 (240)
T ss_dssp CCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSS-SSCEEEEEGGGGHHHHHHHTT
T ss_pred ccceeeccccccceEEEeCCCCeEEEEEEEEECCCCC-CCCeEEEEHHHHHHHHHHHhc
Confidence 345778999999984322 4999999876322 223567888888888887665
|
| >d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Procarboxypeptidase A-S6 subunit III (zymogen E) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.15 E-value=1e-10 Score=101.26 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=106.1
Q ss_pred CeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC--cEEE---------EEEEEEcC-
Q 018198 164 SSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ--STFY---------AQVVGHDQ- 231 (359)
Q Consensus 164 ~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g--~~~~---------~~v~~~d~- 231 (359)
|..|.|....... ....|+|.+|+++ ||||+||||.+.....+.+... .... ..-+..++
T Consensus 3 PW~v~l~~~~~~~-------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~ 74 (232)
T d1fona_ 3 SWQVSLQYEKDGA-------FHHTCGGSLIAPD-WVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPL 74 (232)
T ss_dssp EEEEEEEEEETTE-------EEEEECCEEEETT-EEEECGGGCCTTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTT
T ss_pred ccEEEEEEeCCCc-------eEEEEEEEEecCC-EEEEChhhccCCCceEEEEEeccccccccccccccceeEEEEEccC
Confidence 5567776532111 1237999999987 9999999999887766655321 1111 11122232
Q ss_pred --------CCCEEEEEEcCCCC---CccceEecCC-CCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC----
Q 018198 232 --------VNDLAVLHIDAPNH---ELRPIHVSVS-ADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP---- 290 (359)
Q Consensus 232 --------~~DlAll~v~~~~~---~~~~~~l~~~-~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~---- 290 (359)
..|||||+++.+.. ...++.+... .....+..+++.|+..... .......+..+.....
T Consensus 75 ~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T d1fona_ 75 WNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWD 154 (232)
T ss_dssp CCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTSTT
T ss_pred ccccccccccceeeeecccceEEeecceeeecCcccccCCCCceeEeeccccccCCCCCCCcceEEEEEEEcHHHhhhhh
Confidence 37999999987543 3455555433 3445677888888864321 1222233322221111
Q ss_pred --Cc-ccccEEEE---cccCCCCCccceeecC--CC--eEEEEEeeecCC-C--cceeEEEEehHHHHHHHHHHHhc
Q 018198 291 --GR-LIQGVIQI---DASVNLGNSGGPLLDS--SG--SLIGVNTFITSG-A--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 291 --~~-~~~~~i~~---~~~~~~G~SGgPl~~~--~G--~viGi~~~~~~~-~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
.. .....++. ....+.|+|||||+-. +| .|+||.++.... . ...-..+.-+...++++++.++.
T Consensus 155 ~~~~~~~~~~~c~~~~~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~ 231 (232)
T d1fona_ 155 WWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS 231 (232)
T ss_dssp TTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred ccCceeeeceeeeccccccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHc
Confidence 01 11123333 2246789999998832 34 699999986522 1 12225678899999999988763
|
| >d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Human rhinovirus 2 [TaxId: 12130]
Probab=99.14 E-value=4.8e-10 Score=93.36 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=99.5
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE--EEEE---cCCCCEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ--VVGH---DQVNDLA 236 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~--v~~~---d~~~DlA 236 (359)
+++.+|.|.+. .+..||+.|.++ ++|+++|+..+. .+ .+. ++.+... .... +.+.||+
T Consensus 11 ~kkNv~~i~t~------------~G~~tgLgI~~~-~~lvp~H~~~~~-~i--~i~-~~~~~i~d~~~l~~~~~~~~Dl~ 73 (180)
T d1cqqa_ 11 IKHNSCVITTE------------NGKFTGLGVYDR-FVVVPTHADPGK-EI--QVD-GITTKVIDSYDLYNKNGIKLEIT 73 (180)
T ss_dssp HHHHEEEEEET------------TEEEEEEEEEBT-EEEEEGGGCCCS-EE--EET-TEEEEEEEEEEEECTTSCEEEEE
T ss_pred HhccEEEEEEC------------CeEEEEEEEECC-EEEEecccCCCC-EE--EEC-CEEEEeeceEEEEccCCCceEEE
Confidence 45567777642 346789999865 999999987653 33 332 3333221 1122 3456999
Q ss_pred EEEEcCCCCCccceE--ecCCCCCCCCCEEEEEecCCCCCCceeEeEEeeeecc-cCCcccccEEEEcccCCCCCcccee
Q 018198 237 VLHIDAPNHELRPIH--VSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVNLGNSGGPL 313 (359)
Q Consensus 237 ll~v~~~~~~~~~~~--l~~~~~~~~G~~v~~iG~p~~~~~~~~~G~vs~~~~~-~~~~~~~~~i~~~~~~~~G~SGgPl 313 (359)
+|+++... .++.++ +. ......++.+.+++.+.........+.++..... ..+......+++++++.+|++||||
T Consensus 74 lvklp~~~-~frdirk~~~-~~~~~~~~~~l~i~~~~~~~~~~~vg~~~~~~~~~~~g~~~~~~~~y~~~t~~g~cg~~~ 151 (180)
T d1cqqa_ 74 VLKLDRNE-KFRDIRRYIP-NNEDDYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYCGGVL 151 (180)
T ss_dssp EEEECSSC-CBCCGGGGSC-SSCCCEEEEEEEECTTSSSCEEEEEEEEEECCCEEETTEEECSEEEECCCCCTTCTTCEE
T ss_pred EEEcCCCc-ccCcchhhhc-cCCCCCCCEEEEEEcCCCCcEEEEeeeeEEeeeecCCCCccccEEEEeccCCCcccCCeE
Confidence 99998643 244432 32 2333455667777776555444555655544321 1244555789999999999999999
Q ss_pred ecCCCeEEEEEeeecCCCcceeEEEEeh
Q 018198 314 LDSSGSLIGVNTFITSGAFSGIGFALPI 341 (359)
Q Consensus 314 ~~~~G~viGi~~~~~~~~~~~~~~aip~ 341 (359)
+ .+|+++||++++. ...+||.++
T Consensus 152 ~-~~~~i~G~h~~g~----~~~g~a~~~ 174 (180)
T d1cqqa_ 152 Y-KIGQVLGIHVGGN----GRDGFSAML 174 (180)
T ss_dssp E-ETTEEEEEEEEEC----SSCEEEEEC
T ss_pred E-ECCCEEEEEeccC----CCeEEEEEe
Confidence 9 5899999999873 235777664
|
| >d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: 7S NGF protease subunits species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1e-09 Score=94.43 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=100.8
Q ss_pred CCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecC------Cc-EEEEEE---------
Q 018198 163 ISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSD------QS-TFYAQV--------- 226 (359)
Q Consensus 163 ~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~------g~-~~~~~v--------- 226 (359)
.|.+|.|.... ...|+|.+|+++ ||||+|||+.+...+.+.... .. ......
T Consensus 3 ~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (228)
T d1sgfa_ 3 QPWHVAVYRFN-----------KYQCGGVLLDRN-WVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNM 70 (228)
T ss_dssp CTTEEEEECTT-----------SCCEEEEECSSS-EEEECGGGCCSCCEEEECC----C-CTTCEEEEEEEEEECTTSCG
T ss_pred CCcEEEEEECC-----------cEEEEEEEEcCC-EEEeCHHHccCCceEEEeeeeeccccccceeeeeeeeccccceee
Confidence 47778886321 236999999987 999999999876543322211 11 111111
Q ss_pred ----EEE-----cCCCCEEEEEEcCCCC---CccceEecCCCCCCCCCEEEEEecCCCCC------CceeEeEEeeeecc
Q 018198 227 ----VGH-----DQVNDLAVLHIDAPNH---ELRPIHVSVSADLRVGKKIYAIGHPLGWS------FTCTTGVISALDRE 288 (359)
Q Consensus 227 ----~~~-----d~~~DlAll~v~~~~~---~~~~~~l~~~~~~~~G~~v~~iG~p~~~~------~~~~~G~vs~~~~~ 288 (359)
... +..+|||||+++.+.. .+.++.|.. .....++.....||..... ..+....+......
T Consensus 71 ~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 149 (228)
T d1sgfa_ 71 SLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT-EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNE 149 (228)
T ss_dssp GGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEC-------C---------CEEEEEECTH
T ss_pred eeecccCCCCccccccceeEEeeccccccCCceeeEecCc-cccccCcceEEEeeeeccCCccCCCCccEEEEEEEeCHH
Confidence 000 2367999999987542 567777754 4455677888888753211 11122222222211
Q ss_pred c----CCc-ccccEEEEc-----ccCCCCCccceeecCCCeEEEEEeeecCCC-c-ceeEEEEehHHHHHHHHHHHhc
Q 018198 289 I----PGR-LIQGVIQID-----ASVNLGNSGGPLLDSSGSLIGVNTFITSGA-F-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 289 ~----~~~-~~~~~i~~~-----~~~~~G~SGgPl~~~~G~viGi~~~~~~~~-~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
. ... ......+.. ...+.|++||||+ .++.++||++++..+. . ..-..+.-+...++|+++.+++
T Consensus 150 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~pl~-~~~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~ 226 (228)
T d1sgfa_ 150 DCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLI-CDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN 226 (228)
T ss_dssp HHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEE-ETTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHS
T ss_pred HhhhhccCCcccceEEeccCCCCccccCCCcCCcEE-EeCEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhH
Confidence 1 111 111222221 2467899999999 6899999999875322 1 1224567888999999988875
|
| >d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Coagulation factor IXa, protease domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.1e-10 Score=97.99 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=101.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCCeEEEEecCC---------cEEEEEEEEEc--
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQ---------STFYAQVVGHD-- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g---------~~~~~~v~~~d-- 230 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.....+..... .......+..+
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLI~~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (235)
T d1rfna_ 11 QFPWQVVLNGKV-----------DAFCGGSIVNEK-WIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHN 78 (235)
T ss_dssp SSTTEEEEESSS-----------TTCEEEEEEETT-EEEECGGGCCTTCCCEEEESCSBSSSCCSCCEEEEEEEEEECTT
T ss_pred CcCCEEEEecCC-----------CEEEEEEEeeCC-EEEEChhhcCCCCceEEEEeecccccCCCCcceeeeeEEeeccC
Confidence 357888885321 236999999987 9999999998876555544211 11222222322
Q ss_pred -------CCCCEEEEEEcCCCC---CccceEecCC---CCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeecccC--
Q 018198 231 -------QVNDLAVLHIDAPNH---ELRPIHVSVS---ADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDREIP-- 290 (359)
Q Consensus 231 -------~~~DlAll~v~~~~~---~~~~~~l~~~---~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~~~~-- 290 (359)
..+||||||++.+.. ...++.+... .....+......|+...... .+....+....+..+
T Consensus 79 ~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~c~~ 158 (235)
T d1rfna_ 79 YNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR 158 (235)
T ss_dssp CBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHH
T ss_pred CCCCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEEeccccccccccccCcceEEEEeccccccccc
Confidence 246999999997532 2333333211 11235667788887543221 122222222211111
Q ss_pred ---CcccccEEEE-----cccCCCCCccceeecCCC---eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHh
Q 018198 291 ---GRLIQGVIQI-----DASVNLGNSGGPLLDSSG---SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVK 353 (359)
Q Consensus 291 ---~~~~~~~i~~-----~~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~ 353 (359)
.....+.++. ....+.|+|||||+..++ .|+||.+++...+. ..-..+.-+...+.|+++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~ 233 (235)
T d1rfna_ 159 STKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233 (235)
T ss_dssp HCSSCCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred ccCceecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence 1111122222 235678999999996432 59999998863322 223456788888888887654
|
| >d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.7e-10 Score=96.91 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=104.7
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEEEecC-------Cc--EEEEEEEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKVSFSD-------QS--TFYAQVVGH 229 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~~-------g~--~~~~~v~~~ 229 (359)
--|.+|.|.... ...|+|.+|+++ ||||+|||+.+.. .+.+.... +. .........
T Consensus 11 ~~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T d2bz6h1 11 ECPWQVLLLVNG-----------AQLCGGTLINTI-WVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVII 78 (254)
T ss_dssp SSTTEEEEEETT-----------EEEEEEEECSSS-EEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEE
T ss_pred CCCcEEEEEECC-----------CEEEEEEEeCCC-EEEECcccccCCCCcccceeeccceeeccccccceeeeeeeeee
Confidence 457888887522 226999999987 9999999997643 24444311 11 122222222
Q ss_pred c-------CCCCEEEEEEcCCCC---CccceEecCC----CCCCCCCEEEEEecCCCCCCcee-------EeEEeeee--
Q 018198 230 D-------QVNDLAVLHIDAPNH---ELRPIHVSVS----ADLRVGKKIYAIGHPLGWSFTCT-------TGVISALD-- 286 (359)
Q Consensus 230 d-------~~~DlAll~v~~~~~---~~~~~~l~~~----~~~~~G~~v~~iG~p~~~~~~~~-------~G~vs~~~-- 286 (359)
+ ..+||||||++.+.. .+.++.|... .....+......||......... ...+....
T Consensus 79 ~~~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T d2bz6h1 79 PSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDC 158 (254)
T ss_dssp ETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHH
T ss_pred cccccccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeeeecccchhhh
Confidence 2 256999999987533 3445555321 23446778888888754322111 11111000
Q ss_pred --cccC----CcccccEEEE-----cccCCCCCccceeecC-CC--eEEEEEeeecCCC-cceeEEEEehHHHHHHHHHH
Q 018198 287 --REIP----GRLIQGVIQI-----DASVNLGNSGGPLLDS-SG--SLIGVNTFITSGA-FSGIGFALPIDTVRGIVDQL 351 (359)
Q Consensus 287 --~~~~----~~~~~~~i~~-----~~~~~~G~SGgPl~~~-~G--~viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l 351 (359)
.... .......... ....+.|+||||++.. +| .|+||.+++...+ ...-..+..+...++|+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~ 238 (254)
T d2bz6h1 159 LQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKL 238 (254)
T ss_dssp HHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred hhhhhcccccccccccceeeeccCCCcccccCccccceEEccCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence 0000 1111122222 2246789999999954 33 3999999875322 23346678899999999998
Q ss_pred Hhc
Q 018198 352 VKF 354 (359)
Q Consensus 352 ~~~ 354 (359)
++.
T Consensus 239 i~~ 241 (254)
T d2bz6h1 239 MRS 241 (254)
T ss_dssp HTS
T ss_pred Hhh
Confidence 876
|
| >d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: beta-Tryptase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=4.9e-10 Score=97.55 Aligned_cols=183 Identities=15% Similarity=0.157 Sum_probs=107.4
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC----eEEEEecC------CcEEEEEEEEEcC
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS----TVKVSFSD------QSTFYAQVVGHDQ 231 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~----~~~v~~~~------g~~~~~~v~~~d~ 231 (359)
-.|.+|.|...... ....|+|.+|+++ ||||+|||+.... .+.+.+.. ...++..-+..++
T Consensus 11 e~Pw~v~i~~~~~~--------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~hp 81 (243)
T d2fpza1 11 KWPWQVSLRVHGPY--------WMHFCGGSLIHPQ-WVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHP 81 (243)
T ss_dssp SCTTEEEEEECSSS--------CEEEEEEEEEETT-EEEECHHHHCSBCCCGGGEEEECCCSBTTTTCCCEEEEEEEECT
T ss_pred CCCcEEEEEECCCc--------ccEEEEEEEEeCC-EEEECceeccCCCCcceeEEEEeeecccccccEEEeeeeeeccc
Confidence 36788888643211 1236999999987 9999999996543 34444421 2334444344443
Q ss_pred -------CCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCC-------CceeEeEEeeeecccC---
Q 018198 232 -------VNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWS-------FTCTTGVISALDREIP--- 290 (359)
Q Consensus 232 -------~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~-------~~~~~G~vs~~~~~~~--- 290 (359)
.+|||||+++.+.. .+.++.+.. ......+....+.++..... ..+....+..+....+
T Consensus 82 ~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~ 161 (243)
T d2fpza1 82 QFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAK 161 (243)
T ss_dssp TCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHH
T ss_pred cccccccccchhhhcccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhhhh
Confidence 46999999987643 344444432 23445677888888754321 1223333333332110
Q ss_pred -----------CcccccEEEE---cccCCCCCccceeecCCC---eEEEEEeeecCCCcce-eEEEEehHHHHHHHHHHH
Q 018198 291 -----------GRLIQGVIQI---DASVNLGNSGGPLLDSSG---SLIGVNTFITSGAFSG-IGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 291 -----------~~~~~~~i~~---~~~~~~G~SGgPl~~~~G---~viGi~~~~~~~~~~~-~~~aip~~~i~~~l~~l~ 352 (359)
........+. ....+.|+|||||+..++ .|+||.++....+... -..+.-+...++|+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~WI~~~i 241 (243)
T d2fpza1 162 YHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241 (243)
T ss_dssp HHTTBCSCTTSCSSCTTEEEECCSSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHTTTS
T ss_pred hhcccccCCccceeeeeeEecCCCCCCCccCCCCCeEEEeeCCEEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence 0001112221 235678999999995432 5999999876332222 245778888888888776
Q ss_pred h
Q 018198 353 K 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 242 ~ 242 (243)
T d2fpza1 242 P 242 (243)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Prokaryotic proteases domain: Trypsin species: Streptomyces griseus, strain k1 [TaxId: 1911]
Probab=99.09 E-value=4.5e-09 Score=90.27 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=98.2
Q ss_pred eEEEEEEeCCCEEEecccccCCCC---eEEEEecC-----Cc--EEEEEEEEEc-----CCCCEEEEEEcCCCCCccceE
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGAS---TVKVSFSD-----QS--TFYAQVVGHD-----QVNDLAVLHIDAPNHELRPIH 251 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~---~~~v~~~~-----g~--~~~~~v~~~d-----~~~DlAll~v~~~~~~~~~~~ 251 (359)
.|+|.+|+++ ||||+|||+.+.. .+.+.+.. +. .++...++.+ .++||||||++.+. ..+...
T Consensus 21 ~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~v~~g~~~~~~~~~~~i~~~~i~~~~~~~~~~~DIAllkL~~~~-~~~~~~ 98 (223)
T d1os8a_ 21 GCGGALYAQD-IVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPI-NQPTLK 98 (223)
T ss_dssp TEEEEEEETT-EEEECGGGSSCSEECCCCEEEESCSBTTCTTCEEEEEEEEEECTTCSSSSCCCEEEEESSCC-CSCCCE
T ss_pred cEeEEEEeCC-EEEEChhhccCCCCcceeeeccccccccccccccceeeeeeecccccccceeeeeeeeeeee-eccccc
Confidence 5999999987 9999999997543 35555432 22 2333333333 35699999999854 344444
Q ss_pred ecCCCCCCCCCEEEEEecCCCCC-----CceeEeEEeeeecccC------CcccccEEEEc------ccCCCCCccceee
Q 018198 252 VSVSADLRVGKKIYAIGHPLGWS-----FTCTTGVISALDREIP------GRLIQGVIQID------ASVNLGNSGGPLL 314 (359)
Q Consensus 252 l~~~~~~~~G~~v~~iG~p~~~~-----~~~~~G~vs~~~~~~~------~~~~~~~i~~~------~~~~~G~SGgPl~ 314 (359)
+ ....+..+..+.+.||..... .....-.+........ .....+..... ...|.|++|+||+
T Consensus 99 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~ 177 (223)
T d1os8a_ 99 I-ATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMF 177 (223)
T ss_dssp E-CCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHHGGGSCTTTEEEESCTTTCCCBCCTTCTTCEEE
T ss_pred c-cccccccccceEEeeccccccccccccccccceeeEeCHHHhhhhhcCCCccCcceeeeccccCCcCccccccccceE
Confidence 4 344556788999988864321 1222222222221111 00011122221 1357799999999
Q ss_pred cCCC----eEEEEEeeecCCCc-ceeEEEEehHHHHHHHHHHHhc
Q 018198 315 DSSG----SLIGVNTFITSGAF-SGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 315 ~~~G----~viGi~~~~~~~~~-~~~~~aip~~~i~~~l~~l~~~ 354 (359)
..+. .|+||.+++...+. ..-..+.-+...++|+++.+|.
T Consensus 178 ~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k~ 222 (223)
T d1os8a_ 178 RKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 222 (223)
T ss_dssp EECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred EecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence 5432 39999998763222 2235678899999999988764
|
| >d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Matriptase MTSP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.3e-09 Score=94.83 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=108.0
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--------eEEEEec----------CCcEEE
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--------TVKVSFS----------DQSTFY 223 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--------~~~v~~~----------~g~~~~ 223 (359)
.-|.+|.|.... ....|+|.+|+++ ||||+|||+.+.. ...+... ....+.
T Consensus 11 ~~Pw~v~i~~~~----------~~~~C~GtlIs~~-~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (241)
T d1eaxa_ 11 EWPWQVSLHALG----------QGHICGASLISPN-WLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERR 79 (241)
T ss_dssp SSTTEEEEEETT----------TEEEEEEEECSSS-EEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCEEEE
T ss_pred CCCcEEEEEECC----------CCEEEEEEEEcCC-EEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcEEEE
Confidence 357888876432 1237999999987 9999999996542 2333321 123455
Q ss_pred EEEEEEcC-------CCCEEEEEEcCCCC---CccceEecC-CCCCCCCCEEEEEecCCCCCC-----ceeEeEEeeeec
Q 018198 224 AQVVGHDQ-------VNDLAVLHIDAPNH---ELRPIHVSV-SADLRVGKKIYAIGHPLGWSF-----TCTTGVISALDR 287 (359)
Q Consensus 224 ~~v~~~d~-------~~DlAll~v~~~~~---~~~~~~l~~-~~~~~~G~~v~~iG~p~~~~~-----~~~~G~vs~~~~ 287 (359)
.+-+..++ .+|||||+++.+.. ...++.+.. ......+..+...||...... .+....+.....
T Consensus 80 v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 159 (241)
T d1eaxa_ 80 LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQ 159 (241)
T ss_dssp EEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCH
T ss_pred EEEEEECCcccccccCCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccccccccceEEEEEEeCH
Confidence 55555554 46999999987533 455666643 234467788888887543221 223333332221
Q ss_pred c-----cCCcccccEEEEc-----ccCCCCCccceeecC--CCe--EEEEEeeecCCC-cceeEEEEehHHHHHHHHHHH
Q 018198 288 E-----IPGRLIQGVIQID-----ASVNLGNSGGPLLDS--SGS--LIGVNTFITSGA-FSGIGFALPIDTVRGIVDQLV 352 (359)
Q Consensus 288 ~-----~~~~~~~~~i~~~-----~~~~~G~SGgPl~~~--~G~--viGi~~~~~~~~-~~~~~~aip~~~i~~~l~~l~ 352 (359)
. .......+.++.. ...|.|++||||+-. +|+ ++||.+++...+ ...-..+.-+...++|+++-.
T Consensus 160 ~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~ 239 (241)
T d1eaxa_ 160 TTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239 (241)
T ss_dssp HHHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHH
T ss_pred HHHHHHhCccccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence 1 1111223445542 346789999999843 453 889999865322 222345677888888887643
|
| >d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3.8e-09 Score=91.63 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=96.5
Q ss_pred eEEEEEEeCCCEEEecccccC----CCCeEEEEecCC-------cEEEEEEEEEc--------CCCCEEEEEEcCCCC--
Q 018198 187 SGAGFLWDQDGHIVTNYHVIC----GASTVKVSFSDQ-------STFYAQVVGHD--------QVNDLAVLHIDAPNH-- 245 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~----~~~~~~v~~~~g-------~~~~~~v~~~d--------~~~DlAll~v~~~~~-- 245 (359)
.|+|.+|+++ ||||+|||+. ....+.+...+- .......+..+ ..+|||||+++.+..
T Consensus 23 ~C~GtLIs~~-~VLTaAhCv~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~~~ 101 (242)
T d1q3xa1 23 TAAGALLYDN-WVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVIN 101 (242)
T ss_dssp SEEEEEETTT-EEEECHHHHHHHHTTTCCCEEEESCSBTTCSCSEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCB
T ss_pred EEEEEEEcCC-EEEEChhhccCCCCCcceEEEEeeeeeeccccccccceeeeEEeeccccccccCccccccccCCCcccc
Confidence 6999999987 9999999983 233455555321 22333333332 256999999987543
Q ss_pred -CccceEecC---CCCCCCCCEEEEEecCCCCCC----ceeEeEEeeeecccC-----------CcccccEEEEc-----
Q 018198 246 -ELRPIHVSV---SADLRVGKKIYAIGHPLGWSF----TCTTGVISALDREIP-----------GRLIQGVIQID----- 301 (359)
Q Consensus 246 -~~~~~~l~~---~~~~~~G~~v~~iG~p~~~~~----~~~~G~vs~~~~~~~-----------~~~~~~~i~~~----- 301 (359)
.+.++.+.. ......+......|+...... ....-.+.......+ .......++..
T Consensus 102 ~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (242)
T d1q3xa1 102 SNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGG 181 (242)
T ss_dssp TTBCCCBCCCGGGGGGSSTTCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCC
T ss_pred ccEEEEeccccccccccccceeeeeeeccccccCccccceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCCC
Confidence 344554432 123456778888888653222 222222222221110 11111223322
Q ss_pred ccCCCCCccceeecCC---C--eEEEEEeeecCCC--cceeEEEEehHHHHHHHHHHHhc
Q 018198 302 ASVNLGNSGGPLLDSS---G--SLIGVNTFITSGA--FSGIGFALPIDTVRGIVDQLVKF 354 (359)
Q Consensus 302 ~~~~~G~SGgPl~~~~---G--~viGi~~~~~~~~--~~~~~~aip~~~i~~~l~~l~~~ 354 (359)
...|.|+||||++-.+ | .++||.+++.... ...-..+..+...++|+++.+++
T Consensus 182 ~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~~ 241 (242)
T d1q3xa1 182 KDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241 (242)
T ss_dssp SBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred ccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHHc
Confidence 2467899999998432 2 3999999875322 22335578888888998888763
|
| >d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Eukaryotic proteases domain: Elastase species: Worm (Eisenia fetida) [TaxId: 6396]
Probab=99.00 E-value=5.6e-09 Score=90.07 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=102.8
Q ss_pred CCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC--eEEEEecC--------CcEEEEEEEEEc-
Q 018198 162 NISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS--TVKVSFSD--------QSTFYAQVVGHD- 230 (359)
Q Consensus 162 ~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~--~~~v~~~~--------g~~~~~~v~~~d- 230 (359)
--|.+|.|...... ....|+|.+|+++ ||||+|||+.... .+.+.... .+....+.+..+
T Consensus 11 e~Pw~v~l~~~~~~--------~~~~C~GtLIs~~-~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~h~ 81 (241)
T d1m9ua_ 11 EFPWQLSQQRQSGS--------WSHSCGASLLSST-SALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMHE 81 (241)
T ss_dssp SSTTEEEEEEESSS--------EEEEEEEEECSSS-EEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEECT
T ss_pred CCCCEEEEEEeCCC--------ccEEEEEEEEeCC-EEEEChhhcccccCceeeEEEEeeecccccccccccceeeeeee
Confidence 45677877653321 1237999999987 9999999997543 45554421 223444444433
Q ss_pred --------CCCCEEEEEEcCCCC---CccceEec-CCCCCCCCCEEEEEecCCCC-----CCceeEeEEeeeecccC---
Q 018198 231 --------QVNDLAVLHIDAPNH---ELRPIHVS-VSADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDREIP--- 290 (359)
Q Consensus 231 --------~~~DlAll~v~~~~~---~~~~~~l~-~~~~~~~G~~v~~iG~p~~~-----~~~~~~G~vs~~~~~~~--- 290 (359)
..+|||||+++.+.. .+.++.+. .......+...++.||.... ......-.+.......+
T Consensus 82 ~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 161 (241)
T d1m9ua_ 82 NYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA 161 (241)
T ss_dssp TTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred eeccccccccccceeeeccceeeeeeceeeeeeeccccccccceEEEEeecccccCCCCCCCcceEEEEEeechhHhhhh
Confidence 245999999986543 33444443 23455678899999885422 11222223322221110
Q ss_pred ------CcccccEEEEc-----ccCCCCCccceeecC--CCeEEEEEeeecCCC-----cceeEEEEehHHHHHHHHH
Q 018198 291 ------GRLIQGVIQID-----ASVNLGNSGGPLLDS--SGSLIGVNTFITSGA-----FSGIGFALPIDTVRGIVDQ 350 (359)
Q Consensus 291 ------~~~~~~~i~~~-----~~~~~G~SGgPl~~~--~G~viGi~~~~~~~~-----~~~~~~aip~~~i~~~l~~ 350 (359)
........+.. ...+.|+|||||+.. ++.++||.++....+ ...-..+..+...++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~ 239 (241)
T d1m9ua_ 162 MVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239 (241)
T ss_dssp HTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEESSSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHH
T ss_pred hhcccccccccceeEeecccCCcCcccCCCCcceEEecCCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHH
Confidence 11112223332 246789999999854 458999998765211 1122456777777777653
|
| >d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human poliovirus 1 Mahoney [TaxId: 12081]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Human poliovirus 1 Mahoney [TaxId: 12081]
Probab=98.14 E-value=8.1e-05 Score=60.73 Aligned_cols=142 Identities=14% Similarity=0.213 Sum_probs=81.3
Q ss_pred EEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEE--EEEEcC---CCCEEEEEEcCCCCCccceE--ecCCCCCCC
Q 018198 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQ--VVGHDQ---VNDLAVLHIDAPNHELRPIH--VSVSADLRV 260 (359)
Q Consensus 188 GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~--v~~~d~---~~DlAll~v~~~~~~~~~~~--l~~~~~~~~ 260 (359)
=||+.|-++ ++|+++|...+ +++.+ +|+.+... ....+. ..|+++++++..++ ++-+. +. .....
T Consensus 25 ft~LgI~d~-~~vvP~Ha~~~-~~i~i---~g~~~~v~d~~~l~~~~~~~~Di~li~lp~~~k-fRDIr~fi~--~~~~~ 96 (180)
T d1l1na_ 25 FTMLGVHDN-VAILPTHASPG-ESIVI---DGKEVEILDAKALEDQAGTNLEITIITLKRNEK-FRDIRPHIP--TQITE 96 (180)
T ss_dssp EEEEEEEBT-EEEEEGGGCCC-SEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEECCSCC-BCCCGGGSC--SSCCC
T ss_pred EEEEEEECC-EEEEeCCCCCC-CEEEE---CCEEEEeeeEEEEEeCCCCcEEEEEEEeCCCCc-ccchhhhcc--cCcCC
Confidence 356667655 99999996543 34333 45544331 122232 35999999986442 22221 21 22233
Q ss_pred CCEEEEEecCCCCCCce-eEeEEeeeec-ccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeecCCCcceeEEE
Q 018198 261 GKKIYAIGHPLGWSFTC-TTGVISALDR-EIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFITSGAFSGIGFA 338 (359)
Q Consensus 261 G~~v~~iG~p~~~~~~~-~~G~vs~~~~-~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~~~~~~~~~~a 338 (359)
+.++..+=+-...+... ..|.+..... ...+.....++.+++++.+|+.||||+ .+|+++||++++. ...+|+
T Consensus 97 ~~~~~lv~~~~~~~~~~~~vg~~~~~~~~~~~g~~t~~~~~y~~~t~~G~CG~~l~-~~~~I~GiH~ag~----g~~g~~ 171 (180)
T d1l1na_ 97 TNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVIT-CTGKVIGMHVGGN----GSHGFA 171 (180)
T ss_dssp EEEEEEEECSSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCTTCTTCEEE-ETTEEEEEEEEEE----TTEEEE
T ss_pred CCCEEEEEEcCCCcceEEEecceEEeeeeecCCCccCCEEEEecCCCCcccCCEEE-eCCCEEEEEeCCC----CCceEE
Confidence 34444432322223332 2233322221 112444556788999999999999999 5899999999973 245777
Q ss_pred EehH
Q 018198 339 LPID 342 (359)
Q Consensus 339 ip~~ 342 (359)
.++.
T Consensus 172 ~~l~ 175 (180)
T d1l1na_ 172 AALK 175 (180)
T ss_dssp EECC
T ss_pred eeee
Confidence 7653
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.87 E-value=2.3e-07 Score=85.61 Aligned_cols=82 Identities=16% Similarity=0.001 Sum_probs=62.9
Q ss_pred cccccCCcEEEeeecccccCCcceeeeeeeeccccceeeEEEEeecCCCCccchhhhhhhhccceeeee-EeecccCCce
Q 018198 7 RPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRIDGVFTRRNCNIESL-GVIGLNKDRA 85 (359)
Q Consensus 7 ~p~~~g~d~~~~s~tK~~~gh~d~~~g~~~~~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~l-r~~~~~~~~~ 85 (359)
.++++|+|++++|.||+++||. +|.++++.+.+. .++.....+|.+++|+.+|.+.++++++.+ || +.+
T Consensus 185 ~~~~~~~di~~~S~sK~~~g~~---~G~i~~~~~~i~--~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~-----~~~ 254 (366)
T d2aeua1 185 PALKLGADLVVTSTDKLMEGPR---GGLLAGKKELVD--KIYIEGTKFGLEAQPPLLAGIYRALKNFNLERI-----RKA 254 (366)
T ss_dssp CHHHHTCSEEEEETTSSSSSCS---CEEEEEEHHHHH--HHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHH-----HHH
T ss_pred CHhhcCceEEEecccccccccc---eeEEEecHHHHH--HHHHHHhcccccCCHHHHHHHHHHHHhccHHHH-----HHH
Confidence 4578899999999999999995 677777776553 345566788999999999999999999876 66 555
Q ss_pred EEEEEEECChhHHHHHHHHHhh
Q 018198 86 LFTMVVFGTDRELQQVVKQLQK 107 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~L~k 107 (359)
.++..+++..+.+
T Consensus 255 ---------~~~~~~i~~~~~~ 267 (366)
T d2aeua1 255 ---------FERAKNFDLSKIE 267 (366)
T ss_dssp ---------HHHHHHCCCHHHH
T ss_pred ---------HHHHHHHHHHHHh
Confidence 5555555444443
|
| >d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: NSP4 proteinase species: Equine arteritis virus, EAV [TaxId: 11047]
Probab=97.78 E-value=0.00016 Score=56.83 Aligned_cols=116 Identities=17% Similarity=0.310 Sum_probs=67.9
Q ss_pred ceEEEEEEeCCC--EEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCC--CCccceEecCCCCCCCC
Q 018198 186 GSGAGFLWDQDG--HIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPN--HELRPIHVSVSADLRVG 261 (359)
Q Consensus 186 ~~GsGfii~~~g--~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~--~~~~~~~l~~~~~~~~G 261 (359)
+.|||=+..-+| .++|+.|++.+.....+...+. .+.. .++..-|+|.-++...+ ...|.+.+..+. .|
T Consensus 13 s~GSGGVfTi~g~~vvvTAtHvl~~~~~~~~~~g~~-~~~l---tFk~~GDyA~A~~~~~~w~G~aP~~~~~~~~---~G 85 (198)
T d1mbma_ 13 SYGTGSVWTRNNEVVVLTASHVVGRANMATLKIGDA-MLTL---TFKKNGDFAEAVTTQSELPGNWPQLHFAQPT---TG 85 (198)
T ss_dssp SEEEEEEEEETTEEEEEEEHHHHCTTCEEEEEETTE-EEEE---ECEEETTEEEEEECTTTSCSCCCBCCBCCCC---SE
T ss_pred ccCCcceEEeCCcEEEEEeEEEecCCceeEEeeccc-eEEE---EEeecCceEEEeeccccCCCCCCceEeccCC---cc
Confidence 467776666555 5999999997766666665332 2221 34456799998885422 246677774221 23
Q ss_pred CEEEEEecCCCCCCceeEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 262 KKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 262 ~~v~~iG~p~~~~~~~~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
..-|.. ...+..|.+..- -.+++ ...|+||+|+++.++ ||||++..-
T Consensus 86 rAyw~t------~tgve~g~ig~~----------~afcf---T~cGDSGSPVi~~d~-LvGVHTGSN 132 (198)
T d1mbma_ 86 PASWCT------ATGDEEGLLSGE----------VCLAW---TTSGDSGSAVVQGDA-VVGVHTGSN 132 (198)
T ss_dssp EEEEEE------TTEEEEEEECSS----------CEECC---CCGGGTTCEEEETTE-EEEEEEEEE
T ss_pred ceEEec------ccCcccceecCc----------eEEEE---ccCCCCCCceecCCc-eEEEEeCCC
Confidence 322211 112334444221 11222 345999999996665 999999864
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=6.6e-05 Score=53.44 Aligned_cols=71 Identities=7% Similarity=0.236 Sum_probs=60.3
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
+++....+|.+|+++.+...|..+|+|+.++.+ ....+....++.++.|++..+++.++|++++.|.++..
T Consensus 12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~-~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~ 82 (84)
T d1sc6a3 12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYL-QTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARL 82 (84)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEE-EECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcc-ccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE
Confidence 466678899999999999999999999999988 34444455566677888999999999999999998875
|
| >d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral cysteine protease of trypsin fold domain: 3C cysteine protease (picornain 3C) species: Human hepatitis A virus [TaxId: 208726]
Probab=97.62 E-value=0.001 Score=55.57 Aligned_cols=176 Identities=9% Similarity=-0.029 Sum_probs=93.8
Q ss_pred HHhhhcCCCeeEEEEeeeeecCCcccccccceEEEEEEeCCCEEEecccccCCCC---eEEE-EecCCcEEEEE---EE-
Q 018198 156 IRIFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGAS---TVKV-SFSDQSTFYAQ---VV- 227 (359)
Q Consensus 156 ~~~~~~~~~svV~I~~~~~~~~~~~~~~~~~~GsGfii~~~g~vlT~~Hvv~~~~---~~~v-~~~~g~~~~~~---v~- 227 (359)
.++...+.+-++.|.....+.... ...+|..|-++ ++|..+|.++... .+.. ....+..+... ++
T Consensus 3 ~~~~~~v~kNl~~i~~~~~~~~~~------~~~~~Lgv~~~-~~lvP~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 75 (212)
T d2h6ma1 3 LEIAGLVRKNLVQFGVGEKNGSVR------WVMNALGVKDD-WLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVI 75 (212)
T ss_dssp HHHHHHHHHHEEEEEEECTTSCCE------EEEEEEEEEBT-EEEEEGGGTTTSTTGGGSEEEEEETTEEEEEEGGGSEE
T ss_pred HHHHHHHHhCEEEEEEEcCCCeeE------EEEEEEEEeCC-EEEEcccccccCCCeEEEEEEEEecceEEEeecceEEE
Confidence 345566677788887765443222 25888888866 9999999975432 1211 12234444332 11
Q ss_pred --EEcCCCCEEEEEEcCCCC--Cc-cceEecC-CCCCCCCCEEEEEecCCC-------CCCceeEeEEeeeecccC--Cc
Q 018198 228 --GHDQVNDLAVLHIDAPNH--EL-RPIHVSV-SADLRVGKKIYAIGHPLG-------WSFTCTTGVISALDREIP--GR 292 (359)
Q Consensus 228 --~~d~~~DlAll~v~~~~~--~~-~~~~l~~-~~~~~~G~~v~~iG~p~~-------~~~~~~~G~vs~~~~~~~--~~ 292 (359)
......|+++++++.... ++ +.++-.. .........+...+.... .-..+..+.......... ..
T Consensus 76 ~~~~~~~~Dl~lv~lp~~~~frDI~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 155 (212)
T d2h6ma1 76 QSLDVGFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDL 155 (212)
T ss_dssp EESSSSCCSEEEEECTTSCCBCCCGGGBCCGGGGGGGTTSCEEEEEEETTEEEEEEECSCEEEEEEEEEEECTTSCEEEE
T ss_pred EEccCCCceEEEEECCCCCCcCccccccCcchhcccccCcccEEEeeecCceeeEecccceeEEEeeEEEecCccccccc
Confidence 123577999999975321 11 1111100 011122233444433211 001111221111111111 11
Q ss_pred ccccEEEEcccCCCCCccceeecC----CCeEEEEEeeecCCCcceeEEEEehH
Q 018198 293 LIQGVIQIDASVNLGNSGGPLLDS----SGSLIGVNTFITSGAFSGIGFALPID 342 (359)
Q Consensus 293 ~~~~~i~~~~~~~~G~SGgPl~~~----~G~viGi~~~~~~~~~~~~~~aip~~ 342 (359)
.....+.+..++..|+-|+||+.. +++++|||+++. .+.+||-++.
T Consensus 156 ~~~~~~~Y~~~T~~G~CGsplv~~~~~~~~kIiGiHvaG~----g~~g~a~~lt 205 (212)
T d2h6ma1 156 TVDQAWRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGG----NSILVAKLVT 205 (212)
T ss_dssp EEEEEEEEECCCCTTCTTCEEEESCGGGTTCEEEEEEEEE----TTEEEEEECC
T ss_pred cccceEEEecCCCCcCcCCeEEEcCCCCCceEEEEEcCCC----CCcEEEhhhh
Confidence 233567888899999999999953 458999999973 3578888764
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.00012 Score=51.23 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhceeeeeec
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNVLKVSTK 117 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~~ 117 (359)
+.+....+|.+|+++.+...|..+|+|+.+++++... .+...|.+.+ |....+++.++|+++++|.+|...
T Consensus 4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i 75 (78)
T d1ygya3 4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVV 75 (78)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEE
T ss_pred eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEE
Confidence 3566788999999999999999999999999996544 4556777776 455668999999999999999865
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.37 E-value=0.00014 Score=49.66 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=45.5
Q ss_pred eEEEEeecCCCCccchhhhhhhhccceeeeeEeeccc-CCceEEEEEEECChhHHHHHHHHHhhhhce
Q 018198 45 HTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLN-KDRALFTMVVFGTDRELQQVVKQLQKLVNV 111 (359)
Q Consensus 45 ~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~-~~~~~~~~~~~~~~~~~~~i~~~L~k~~~v 111 (359)
++++.+++|..|.|.++...|..||+|++++.+..++ ....|| ++. +.+. ..+.|+++--.
T Consensus 4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri--iv~-~~e~---a~~~L~~~g~~ 65 (70)
T d2f06a2 4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVS-DPDK---AYKALKDNHFA 65 (70)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE--EES-CHHH---HHHHHHHTTCC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE--EEC-ChHH---HHHHHHHCCCE
Confidence 5799999999999999999999999999999997655 445665 333 3333 33456555433
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.88 E-value=0.009 Score=41.08 Aligned_cols=71 Identities=6% Similarity=0.206 Sum_probs=54.3
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccC--CceEEEEEEECChhHHHHHHHHHhhhhceeeeee
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNK--DRALFTMVVFGTDRELQQVVKQLQKLVNVLKVST 116 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~--~~~~~~~~~~~~~~~~~~i~~~L~k~~~v~~v~~ 116 (359)
.+.....+..|.|+.+...+...|.|++++....... ....+++.+.......+.|.+.|++++.|.+|..
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence 3567788999999999999999999999998743222 2347888887655459999999999999999975
|
| >d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: NS3 protease species: Dengue virus type 2 [TaxId: 11060]
Probab=95.29 E-value=0.024 Score=43.03 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=68.2
Q ss_pred eEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEEE
Q 018198 187 SGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYA 266 (359)
Q Consensus 187 ~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~~ 266 (359)
.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++= .- -+-+|. ..-..++.|.+
T Consensus 19 ~GVGv~~--~GVfHTmWHVTrGa~---l~~-~g~~~--~P~wa~V~~Dlis--YG------G~WkL~--~kW~~~~eVqv 80 (150)
T d2fomb1 19 IGAGVYK--EGTFHTMWHVTRGAV---LMH-KGKRI--EPSWADVKKDLIS--YG------GGWKLE--GEWKEGEEVQV 80 (150)
T ss_dssp EEEEEEE--TTEEEEEHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--ES------SSCCCC--CCCCTTCCEEE
T ss_pred eeeEEee--CCEEEEeeeecCCce---EEE-CCcEe--cceeehheeeeee--cC------CcccCC--cccCCCceEEE
Confidence 5667665 478999999988763 222 23333 1233455667642 11 223442 34456788999
Q ss_pred EecCCCCCCcee---EeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeeec
Q 018198 267 IGHPLGWSFTCT---TGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFIT 328 (359)
Q Consensus 267 iG~p~~~~~~~~---~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~~ 328 (359)
+-+|.+...... .|.+.-. +. +.-.+..+..+|.||+|++|.+|++||+--.+.
T Consensus 81 ~a~~Pg~~~~~~q~~PG~~k~~-----~g---~igaI~lD~p~GtSGSPIin~~G~vVGLYGNGv 137 (150)
T d2fomb1 81 LALEPGKNPRAVQTKPGLFKTN-----TG---TIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGV 137 (150)
T ss_dssp EECCTTSCCEEEEECCEEEECS-----SC---EEEEECCCSCGGGTTCEEECTTSCEEEETTCEE
T ss_pred EEECCCCceEEEEeCCeEEEcC-----CC---eEEEEECCCCCCCCCCceECCCCCEEEEecceE
Confidence 988877554332 3333211 11 122333445679999999999999999855444
|
| >d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: NS3 protease species: West nile virus [TaxId: 11082]
Probab=94.72 E-value=0.021 Score=43.48 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=65.7
Q ss_pred ceEEEEEEeCCCEEEecccccCCCCeEEEEecCCcEEEEEEEEEcCCCCEEEEEEcCCCCCccceEecCCCCCCCCCEEE
Q 018198 186 GSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIY 265 (359)
Q Consensus 186 ~~GsGfii~~~g~vlT~~Hvv~~~~~~~v~~~~g~~~~~~v~~~d~~~DlAll~v~~~~~~~~~~~l~~~~~~~~G~~v~ 265 (359)
-.|-|+.- +|-+=|-+||-+++. +.. +++.+ .....|-..|++= .- -+-+|.. .=.-.+.|.
T Consensus 17 Q~GvGv~~--~GVfHTmWHVTrGa~---l~~-~g~~~--~P~wa~V~~Dlis--YG------G~WkL~~--~W~g~eeVq 78 (152)
T d2fp7b1 17 QAGAGVMV--EGVFHTLWHTTKGAA---LMS-GEGRL--DPYWGSVKEDRLC--YG------GPWKLQH--KWNGHDEVQ 78 (152)
T ss_dssp EEEEEEEE--TTEEEEEHHHHTTCC---EEE-TTEEE--CEEEEETTTTEEE--ES------SSCCCCC--CCCSSSCEE
T ss_pred eeeeEEee--CCEEEEeeeecCCce---EEE-CCcEE--cceeecceeeeee--cC------CCccCCc--ccCCcceEE
Confidence 35777665 478999999988763 222 23222 2233455667642 11 1224421 112237788
Q ss_pred EEecCCCCCCce---eEeEEeeeecccCCcccccEEEEcccCCCCCccceeecCCCeEEEEEeee
Q 018198 266 AIGHPLGWSFTC---TTGVISALDREIPGRLIQGVIQIDASVNLGNSGGPLLDSSGSLIGVNTFI 327 (359)
Q Consensus 266 ~iG~p~~~~~~~---~~G~vs~~~~~~~~~~~~~~i~~~~~~~~G~SGgPl~~~~G~viGi~~~~ 327 (359)
++-+|.+..... ..|...-. .. +.-.+..+..+|.||+|++|.+|+|||+--.+
T Consensus 79 v~a~~Pg~~~~~~q~~PG~~~~~-----~G---~igaI~lD~p~GtSGSPI~n~~G~vVGLYGNG 135 (152)
T d2fp7b1 79 MIVVEPGKNVKNVQTKPGVFKTP-----EG---EIGAVTLDYPTGTSGSPIVDKNGDVIGLYGNG 135 (152)
T ss_dssp EEECCTTSCCEEEEECCEEEEET-----TE---EEEEECCCCCGGGTTCEEECTTSCEEEESCCE
T ss_pred EEEECCCCceEEEEcCCeeEEcC-----CC---eEEEEECCCCCCCCCCceEccCCCEEEEecce
Confidence 888877654432 22333211 11 12223334667999999999999999985554
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=93.90 E-value=0.087 Score=36.58 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=52.0
Q ss_pred EEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEECChhHHHHHHHHHhhhhc
Q 018198 46 TISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFGTDRELQQVVKQLQKLVN 110 (359)
Q Consensus 46 ~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~k~~~ 110 (359)
.+...-.+..|.++.+..++..+|.|++.+++... .+.-.+.+.+..++..+.++.+.|+++-+
T Consensus 7 vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~L~~l~~ 70 (86)
T d1u8sa1 7 VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF-GKEFTLLMLISGSPSNITRVETTLPLLGQ 70 (86)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE-CCeeEEEEEEEcCcccHHHHHHHHHHHHH
Confidence 56778899999999999999999999999998333 34445667777777788888888888754
|
| >d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: Viral capsid protein species: Venezuelan equine encephalitis virus [TaxId: 11036]
Probab=93.23 E-value=0.085 Score=39.18 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=25.6
Q ss_pred EcccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 300 IDASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 300 ~~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
-.....+|+||-|++|..|+||||+-.+.+
T Consensus 98 p~g~g~~GDSGRpi~DN~GkVVaIVLGG~n 127 (156)
T d1ep5a_ 98 PKGVGAKGDSGRPILDNQGRVVAIVLGGVN 127 (156)
T ss_dssp ETTCCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred ccCCCCCCCCCCccCcCCCcEEEEEecCCC
Confidence 345567899999999999999999988764
|
| >d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: Viral capsid protein species: Sindbis virus [TaxId: 11034]
Probab=93.06 E-value=0.076 Score=39.18 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.1
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITS 329 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~ 329 (359)
.....+|+||-|++|.+|+||+|+-.+.+
T Consensus 95 ~g~g~~GDSGRpi~DN~GrVVaIVLGGan 123 (152)
T d1wyka_ 95 RGVGGRGDSGRPIMDNSGRVVAIVLGGAD 123 (152)
T ss_dssp TTTCCTTCTTCEEECTTSCEEEEEEEEEE
T ss_pred ccCCCCCCCCCccCcCCCcEEEEEecCCC
Confidence 44567899999999999999999988763
|
| >d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trypsin-like serine proteases superfamily: Trypsin-like serine proteases family: Viral proteases domain: Viral capsid protein species: Semliki forest virus [TaxId: 11033]
Probab=92.45 E-value=0.13 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.4
Q ss_pred cccCCCCCccceeecCCCeEEEEEeeecCC
Q 018198 301 DASVNLGNSGGPLLDSSGSLIGVNTFITSG 330 (359)
Q Consensus 301 ~~~~~~G~SGgPl~~~~G~viGi~~~~~~~ 330 (359)
.....+|+||-|++|..|+||+|+-.+.+.
T Consensus 93 ~g~g~~GDSGRpi~DN~GkVVaIVLGGa~e 122 (149)
T d1vcpa_ 93 TGAGKPGDSGRPIFDNKGRVVAIVLGGANE 122 (149)
T ss_dssp TTSCCTTCTTCEEECTTSCEEEEEEEEEEC
T ss_pred cccCCCCCCCCccCcCCCCEEEEEecCCCC
Confidence 445678999999999999999999887643
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.93 E-value=0.22 Score=34.03 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=48.4
Q ss_pred eeEEEEeecCCCCccchhhhhhhhccceeeeeEeecccCCceEEEEEEEC-ChhHHHHHHHHHhhhhce
Q 018198 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGVIGLNKDRALFTMVVFG-TDRELQQVVKQLQKLVNV 111 (359)
Q Consensus 44 ~~~l~~~~~~~G~~lsp~~a~l~~RG~~tl~lr~~~~~~~~~~~~~~~~~-~~~~~~~i~~~L~k~~~v 111 (359)
+..+.....+..|.++.+..+|..+|.|++.+.... ..+.-.|.+.+.. +....+++.+.|+++.+-
T Consensus 2 k~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~-~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~ 69 (83)
T d1zpva1 2 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV-LDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 69 (83)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEE-eCCEEEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999998832 2233334444442 334577888888876643
|