Citrus Sinensis ID: 018211
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H151 | 544 | Malonate--CoA ligase OS=A | yes | no | 0.938 | 0.619 | 0.697 | 1e-138 | |
| Q4G176 | 576 | Acyl-CoA synthetase famil | yes | no | 0.827 | 0.515 | 0.373 | 4e-54 | |
| Q6GLK6 | 578 | Acyl-CoA synthetase famil | N/A | no | 0.729 | 0.453 | 0.388 | 2e-50 | |
| Q58DN7 | 586 | Acyl-CoA synthetase famil | yes | no | 0.827 | 0.506 | 0.355 | 3e-50 | |
| Q3URE1 | 583 | Acyl-CoA synthetase famil | yes | no | 0.724 | 0.445 | 0.384 | 4e-49 | |
| P94547 | 560 | Long-chain-fatty-acid--Co | yes | no | 0.821 | 0.526 | 0.259 | 8e-20 | |
| O07610 | 513 | Long-chain-fatty-acid--Co | no | no | 0.802 | 0.561 | 0.247 | 8e-20 | |
| B5XUP2 | 719 | Bifunctional protein aas | yes | no | 0.406 | 0.203 | 0.325 | 1e-16 | |
| Q6D107 | 738 | Bifunctional protein aas | yes | no | 0.423 | 0.205 | 0.310 | 5e-16 | |
| B4T503 | 719 | Bifunctional protein aas | yes | no | 0.406 | 0.203 | 0.325 | 5e-16 |
| >sp|Q8H151|AAE13_ARATH Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/341 (69%), Positives = 277/341 (81%), Gaps = 4/341 (1%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L +D ++TK
Sbjct: 1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 61 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 118
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
STED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVYT
Sbjct: 119 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 178
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 179 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 238
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
VEF+PKFSV GIW+RWRESYPVN + ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 239 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 298
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 299 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 339
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Malonate--CoA ligase that catalyzes the formation of malonyl-CoA directly from malonate and CoA. May be required for the detoxification of malonate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 3 |
| >sp|Q4G176|ACSF3_HUMAN Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 182/332 (54%), Gaps = 35/332 (10%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA-----R 70
D +A+ ++Y +L S +LR+S +C L G G R
Sbjct: 55 DRIALVDQHGRHTYRELYSRSLRLSQEICR-----------------LCGCVGGDLREER 97
Query: 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
+ + +V +W SG +AVPL +P ++L +V+ DS S+VL++++Y E+L
Sbjct: 98 VSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLS 157
Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
V K G L+P P + + G R + A+I+YTSGTTG+PKGV+
Sbjct: 158 PVVRKLGV--PLLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLS 214
Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
TH++I A V L W +T D LH LPLHHVHG+ NALL PL+ GAT MP+FS +
Sbjct: 215 THQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ 274
Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL 307
+W+++ S I F VPT+YT+L++ Y+ T+ A A +++RL
Sbjct: 275 VWEKFLSS-------ETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRL 327
Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
M+ GS+ALPLPV+++W+ ITGH LLERYGMTE
Sbjct: 328 MVSGSAALPLPVLEKWKNITGHTLLERYGMTE 359
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Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q6GLK6|ACSF3_XENLA Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 159/273 (58%), Gaps = 11/273 (4%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + + +V W SG IAVPL S+P SEL +V+ DS ++V++ E Y VL
Sbjct: 98 RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVL 157
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+A + G + N+ + + + + ++D + A+I+YTSGTTG+PKGV+
Sbjct: 158 SPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVL 216
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
TH ++ + V L W +T D LH LPLHHVHG+ N L+ PL+ GAT +P+F +
Sbjct: 217 STHYNLYSMVTALVNEWGWTKEDSILHVLPLHHVHGVVNKLMCPLWVGATCVILPEFCPK 276
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE---LQAASASAAKQLR 306
+WQ + R +I F VPT+Y++LI YE T + A+ +++R
Sbjct: 277 TVWQHFL-------GRDVPSINIFMAVPTIYSKLIAYYEQHFTHSNVREFVRAACQERIR 329
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LM+ GSSALP+PV+++W+ ITGH LLERYGMTE
Sbjct: 330 LMVSGSSALPVPVLERWQEITGHTLLERYGMTE 362
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. May have some preference toward very-long-chain substrates. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q58DN7|ACSF3_BOVIN Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 178/332 (53%), Gaps = 35/332 (10%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D +A+ ++Y L +LR+S +C L+ ++ E R+ ++
Sbjct: 56 DRLALIDQHGRHTYKDLYLRSLRLSREICQ--LRACADGDLREE----------RVSLLC 103
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
FV W SG +AVPL +P ++L + + DS S+VL+ ++ E+L VA K
Sbjct: 104 SNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQK 163
Query: 136 SGAKFSLIPPVPNVSSETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
G VP + TV+ D + ++ + A+I+YTSGTTG+PKGV+
Sbjct: 164 LG--------VPLLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLS 215
Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
TH +I A V L W +T D LH LPLHHVHG+ N LL PL+ GAT +P+FS +
Sbjct: 216 THDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQL 275
Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLRL 307
+W+++ S I F VPT+Y++L+ Y+ T+ A +++RL
Sbjct: 276 VWEKFLSS-------EAPQINVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIRL 328
Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
M+ GS+ALPLPV+++W+ ITGH LLERYGMTE
Sbjct: 329 MVSGSAALPLPVLEKWKGITGHTLLERYGMTE 360
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Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3URE1|ACSF3_MOUSE Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 157/273 (57%), Gaps = 13/273 (4%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + +V +W SG +AVPL +PE++L + + DS S+V+ ++Y E L
Sbjct: 97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+A + G L+P P V T Q + G R A+I YTSGTTG+PKG +
Sbjct: 157 SPLAQRLGV--PLLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
TH+++ A V L +W +T D LH LPLHHVHG+ N LL PL+ GAT +P+FS +
Sbjct: 214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLR 306
+W+++ S IT F VPT+Y++L+ Y+ T+ A +++R
Sbjct: 274 QVWEKFLSS-------EAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LM+ GS+ALP+P++++W + TGH LLERYGMTE
Sbjct: 327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTE 359
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Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 75/370 (20%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D AI K ++ + + AL++++ L N L+ K + AV+ C
Sbjct: 39 DKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQ------KGDRVAVMLPNCP------- 85
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------------- 120
+ V G F+G I V Y E EL + + D+ +S+++
Sbjct: 86 ----QTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTL 141
Query: 121 ---------STEDYREVLQNVASKSGAKFSL---IPPVPNVSSETTVFDQSQAE-----K 163
S +DY +N+ K + N+ + + Q + E K
Sbjct: 142 SIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPK 201
Query: 164 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT---SADQFLHCLPL 220
+D + D A++ YT GTTG PKGV+ TH++I A +M AW Y A++ L +P
Sbjct: 202 IDPEH--DIAVLQYTGGTTGAPKGVMLTHQNILANTEMCA-AWMYDVKEGAEKVLGIVPF 258
Query: 221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
HV+GL + + G + +PKF + + P T F G PT+Y
Sbjct: 259 FHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKP----------TLFPGAPTIY 308
Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEG 340
L+ ELQ S+ K + GS+ALP+ V Q++E +TG +L+E YG++E
Sbjct: 309 IGLLH-----HPELQHYDLSSIKSC---LSGSAALPVEVKQKFEKVTGGKLVEGYGLSEA 360
Query: 341 --CTKGRHCW 348
T W
Sbjct: 361 SPVTHANFIW 370
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 52/340 (15%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
DS+A R +Y +L R + L ++ K ++ A+L G
Sbjct: 16 DSIACRFKDHMMTYQELNEYIQRFADGLQEAGME------KGDHLALLLGN--------- 60
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S +F+ G +G + VP+ Y +E+ +++ + D+ ++ + +++ +
Sbjct: 61 --SPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESM-HE 117
Query: 136 SGAKFSLI---------PPV--PNVSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTS 179
S K L+ P P V + T F + S A++ +D A+I+YTS
Sbjct: 118 SLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTS 177
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
GTTGKPKG + TH+++ + + D + LP+ HV L + APL +GAT
Sbjct: 178 GTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGAT 237
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
V P+FS +++ ++ + T F GVPTMY L Q + +
Sbjct: 238 VLIEPQFSPASVFKLVKQ----------QQATIFAGVPTMYNYLFQHENGKKDDFSS--- 284
Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+RL + G +++P+ ++ +E G +LE YG++E
Sbjct: 285 -----IRLCISGGASMPVALLTAFEEKFGVTILEGYGLSE 319
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Involved in the degradation of long-chain fatty acids. Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|B5XUP2|AAS_KLEP3 Bifunctional protein aas OS=Klebsiella pneumoniae (strain 342) GN=aas PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 35/181 (19%)
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
Q+ ED A+I++TSG+ G PKGVVH+HKS+ A V+ + ++T+ D+F+ LPL H GL
Sbjct: 362 QQPEDAAMILFTSGSEGNPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGL 421
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
LL PL+ GA V P P++ E + T G T
Sbjct: 422 TVGLLTPLFTGAEVFLYPS--------------PLHYRVVPELVYDRNCTVLFGTSTFLA 467
Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
Y R Y+ +LR ++ G+ L Q W+ G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514
Query: 339 E 339
E
Sbjct: 515 E 515
|
Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1. Klebsiella pneumoniae (strain 342) (taxid: 507522) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q6D107|AAS_ERWCT Bifunctional protein aas OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=aas PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPL 220
A M Q+ +D A++++TSG+ G PKGVVH+H S+ A V+ + ++T D+F+ LPL
Sbjct: 356 ARAMLPQKPDDAAIVLFTSGSEGNPKGVVHSHDSLLANVEQIRTVADFTPGDRFMSALPL 415
Query: 221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTG 275
H GL LL PL GA V P P++ E + T G
Sbjct: 416 FHAFGLTVGLLTPLITGARVFLYPS--------------PLHYRIVPELVYDQNCTVLFG 461
Query: 276 VPTM---YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLL 332
T Y R Y+ +LR ++ G+ L Q W+ G R+L
Sbjct: 462 TSTFLGNYARFAHPYD-------------FARLRYVVAGAEKLSETTRQVWQDKFGIRIL 508
Query: 333 ERYGMTE 339
E YG+TE
Sbjct: 509 EGYGVTE 515
|
Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1. Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B4T503|AAS_SALNS Bifunctional protein aas OS=Salmonella newport (strain SL254) GN=aas PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 35/181 (19%)
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ + ++T+ D+F+ LPL H GL
Sbjct: 362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGL 421
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
L PL GA V P P++ E + T G T
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467
Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
Y R Y+ +LR ++ G+ L Q W+ G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514
Query: 339 E 339
E
Sbjct: 515 E 515
|
Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1. Salmonella newport (strain SL254) (taxid: 423368) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 225442581 | 552 | PREDICTED: acyl-CoA synthetase family me | 0.941 | 0.612 | 0.747 | 1e-139 | |
| 9294464 | 608 | long-chain-fatty-acid-CoA ligase-like pr | 0.938 | 0.554 | 0.697 | 1e-136 | |
| 380042380 | 564 | acyl-activating enzyme 10 [Cannabis sati | 0.944 | 0.601 | 0.694 | 1e-136 | |
| 297830202 | 608 | hypothetical protein ARALYDRAFT_318392 [ | 0.935 | 0.552 | 0.697 | 1e-136 | |
| 21536867 | 544 | putative long-chain acyl-CoA synthetase | 0.938 | 0.619 | 0.697 | 1e-136 | |
| 18401035 | 544 | putative long-chain acyl-CoA synthetase | 0.938 | 0.619 | 0.697 | 1e-136 | |
| 297743247 | 583 | unnamed protein product [Vitis vinifera] | 0.941 | 0.579 | 0.686 | 1e-134 | |
| 224054376 | 539 | predicted protein [Populus trichocarpa] | 0.916 | 0.610 | 0.705 | 1e-134 | |
| 449463158 | 610 | PREDICTED: malonate--CoA ligase-like [Cu | 0.913 | 0.537 | 0.672 | 1e-133 | |
| 449507752 | 610 | PREDICTED: malonate--CoA ligase-like [Cu | 0.913 | 0.537 | 0.672 | 1e-133 |
| >gi|225442581|ref|XP_002279139.1| PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/345 (74%), Positives = 297/345 (86%), Gaps = 7/345 (2%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV KA ++GS +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T +K+++S
Sbjct: 1 MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61 GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
STEDYRE+++NVA+KS A+FSLIPPVP++ S T+ D Q + + G+ EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHHVHGLFNALLAPL
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHVHGLFNALLAPL 239
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
YAG+TVEFMPKFSVRGIWQRWRES+P +G + +AIT FTGVPTMYTRLIQGYEAMD EL
Sbjct: 240 YAGSTVEFMPKFSVRGIWQRWRESHPKDGTKVDDAITVFTGVPTMYTRLIQGYEAMDPEL 299
Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
QAASASAA +LRLMMCGSSALP PVMQQWETITGHRLLERYGMTE
Sbjct: 300 QAASASAASKLRLMMCGSSALPYPVMQQWETITGHRLLERYGMTE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9294464|dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/341 (69%), Positives = 277/341 (81%), Gaps = 4/341 (1%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L +D ++TK
Sbjct: 65 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 124
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 125 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
STED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 242
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 302
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
VEF+PKFSV GIW+RWRESYPVN + ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042380|gb|AFD33354.1| acyl-activating enzyme 10 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/354 (69%), Positives = 276/354 (77%), Gaps = 15/354 (4%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV K K+GS AR+ VAIRADQKSYSY QL SSA I SLLC +LK E K
Sbjct: 1 MEVLKEVAKEGSAAREGVAIRADQKSYSYKQLISSAQSICSLLCGTELKAIHEAGKQARP 60
Query: 61 AV-------LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHD 113
+ GARIGIVAKPS EFVAGVLGTW SG +AVPLALSYPE+ELLHVM+D
Sbjct: 61 SASINGAGGHGHLGGARIGIVAKPSAEFVAGVLGTWLSGGVAVPLALSYPEAELLHVMND 120
Query: 114 SDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR----- 168
SDISM+LSTED++E++QN+A+K+ A+FSLIP VP+ S+ D Q +
Sbjct: 121 SDISMILSTEDHQELMQNIAAKTSAQFSLIPSVPSSCSQEVAVDHRQTGDISTDSILLNR 180
Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
E+PALIVYTSGTTGKPKGVVHTH+SI AQVQ L +AWEYT ADQFLHCLPLHHVHG
Sbjct: 181 EISNENPALIVYTSGTTGKPKGVVHTHQSISAQVQTLAKAWEYTPADQFLHCLPLHHVHG 240
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
LFNAL APLYA +TVEF+PKFSVRGIWQRWRESYP + +A + IT FTGVPTMYTRLIQ
Sbjct: 241 LFNALFAPLYARSTVEFLPKFSVRGIWQRWRESYPTSETKANDCITVFTGVPTMYTRLIQ 300
Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
GYEAMD EL+ ASASAAKQLRLMMCGSSALP+PVMQQW+TITGHRLLERYGMTE
Sbjct: 301 GYEAMDPELKEASASAAKQLRLMMCGSSALPVPVMQQWQTITGHRLLERYGMTE 354
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830202|ref|XP_002882983.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata] gi|297328823|gb|EFH59242.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/341 (69%), Positives = 275/341 (80%), Gaps = 5/341 (1%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEVFKAA+ +GS + D +AI+AD KSYSY QL SSA RIS L + D E K E
Sbjct: 66 MEVFKAAFSEGSNSCDRIAIKADGKSYSYGQLTSSAFRISKLFSNEDTTNGGETKKYEGF 125
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
L G ARIGIVAKPS EFVAGV+GTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 126 GSLKG---ARIGIVAKPSAEFVAGVMGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
STED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGAQFHLIPPVVNSTSETVARNQFQDDSFEAEGKFLDDPALIVYT 242
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTGKPKGVVHTH SI++QV+MLTEAWEYTS D FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVKMLTEAWEYTSTDHFLHCLPLHHVHGLFNALFAPLYARS 302
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
VEF+PKFSV GIW+RWRESYP N + +AIT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPQNDEKNNDAITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 403
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21536867|gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/341 (69%), Positives = 277/341 (81%), Gaps = 4/341 (1%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L +D ++TK
Sbjct: 1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 61 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 118
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
STED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVYT
Sbjct: 119 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 178
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 179 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 238
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
VEF+PKFSV GIW+RWRESYPVN + ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 239 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 298
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 299 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 339
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401035|ref|NP_566537.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|75299745|sp|Q8H151.1|AAE13_ARATH RecName: Full=Malonate--CoA ligase; AltName: Full=Acyl-activating enzyme 13; AltName: Full=Malonyl-CoA synthetase gi|23397257|gb|AAN31910.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|29893233|gb|AAP03025.1| acyl-activating enzyme 13 [Arabidopsis thaliana] gi|332642258|gb|AEE75779.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/341 (69%), Positives = 277/341 (81%), Gaps = 4/341 (1%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L +D ++TK
Sbjct: 1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 61 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 118
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
STED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVYT
Sbjct: 119 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 178
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 179 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 238
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
VEF+PKFSV GIW+RWRESYPVN + ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 239 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 298
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 299 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 339
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743247|emb|CBI36114.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/376 (68%), Positives = 297/376 (78%), Gaps = 38/376 (10%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV KA ++GS +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T +K+++S
Sbjct: 1 MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61 GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
STEDYRE+++NVA+KS A+FSLIPPVP++ S T+ D Q + + G+ EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH------------- 221
I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLH
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHIHKTIFRILKIS 239
Query: 222 ------------------HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNG 263
HVHGLFNALLAPLYAG+TVEFMPKFSVRGIWQRWRES+P +G
Sbjct: 240 ISHNFDMKFLHGSLTLTIHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESHPKDG 299
Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
+ +AIT FTGVPTMYTRLIQGYEAMD ELQAASASAA +LRLMMCGSSALP PVMQQW
Sbjct: 300 TKVDDAITVFTGVPTMYTRLIQGYEAMDPELQAASASAASKLRLMMCGSSALPYPVMQQW 359
Query: 324 ETITGHRLLERYGMTE 339
ETITGHRLLERYGMTE
Sbjct: 360 ETITGHRLLERYGMTE 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054376|ref|XP_002298229.1| predicted protein [Populus trichocarpa] gi|222845487|gb|EEE83034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/343 (70%), Positives = 283/343 (82%), Gaps = 14/343 (4%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV K Y++G+ A DS+AIRA+ KSYSY QL SSA IS LLC++ L+T
Sbjct: 1 MEVVKKVYRQGTAAADSIAIRAEHKSYSYKQLISSAWEISDLLCNSGLETVDG------- 53
Query: 61 AVLAGGC----GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
GGC GARIGIVAKPS EFVAG+L TWFSG +AVPLALSYPE+ELLHVM+D++I
Sbjct: 54 ---VGGCKHLGGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPETELLHVMNDAEI 110
Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
SMVLSTED++E++QNVA K A+FSLIP V +SS +V D SQ E++ ++G+DPALI+
Sbjct: 111 SMVLSTEDHQELMQNVADKCAAQFSLIPSVHRISSHESVHDHSQVEEIALEKGDDPALII 170
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
YTSGTTGKPKG VHTHKSI AQVQ L EAWEY+S DQFL+CLPLHHVHG FN+L AP+YA
Sbjct: 171 YTSGTTGKPKGAVHTHKSITAQVQTLAEAWEYSSTDQFLNCLPLHHVHGFFNSLFAPIYA 230
Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
G+TVEFMPKFSVRGIWQRWRESYP NG++A +AIT FTGVPT+Y+RLIQGY AMD++ QA
Sbjct: 231 GSTVEFMPKFSVRGIWQRWRESYPPNGSKADDAITVFTGVPTIYSRLIQGYGAMDSDQQA 290
Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
ASASAA+QLRLMM GSSALPLPVMQ+WE ITGHRLLERYGMTE
Sbjct: 291 ASASAARQLRLMMSGSSALPLPVMQEWEAITGHRLLERYGMTE 333
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463158|ref|XP_004149301.1| PREDICTED: malonate--CoA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/351 (67%), Positives = 281/351 (80%), Gaps = 23/351 (6%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV K+A K G+ R++VAIRA+QKS+SY QL SSAL+IS LL S+DL+T
Sbjct: 62 MEVVKSAAKHGATCRENVAIRANQKSHSYIQLISSALKISDLLTSSDLRTGHGHLG---- 117
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GA+IGIVAKPS EF+AGVLGTWFSG +AVPLALSYPE+ELLHV++DS++SM+L
Sbjct: 118 -------GAKIGIVAKPSAEFLAGVLGTWFSGGVAVPLALSYPEAELLHVLNDSEVSMIL 170
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS---QAEKMDGQR--------- 168
STED+ E +Q+VA+K+ A SLIPPVP++ SE DQS + + D R
Sbjct: 171 STEDHVEFMQSVAAKTVATVSLIPPVPHIYSERNSHDQSTNIEVDAADADRVFQGTVENL 230
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
+DPALI+YTSGTTGKPKGVVHTHKSI +QVQML+ AWEYTSADQFLHCLPLHHVHGLFN
Sbjct: 231 SDDPALIIYTSGTTGKPKGVVHTHKSITSQVQMLSNAWEYTSADQFLHCLPLHHVHGLFN 290
Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
LLAP+YAG+TVEFMPKFSV GIW+RWRESYP +++ +AIT FTGVPTMY RL+QGYE
Sbjct: 291 GLLAPIYAGSTVEFMPKFSVSGIWKRWRESYPSKSSKSDDAITVFTGVPTMYARLLQGYE 350
Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
AMD+ELQ ASASAA+QLRLMMCGSSALP P+M+QW+ +TGH LLERYGMTE
Sbjct: 351 AMDSELQLASASAARQLRLMMCGSSALPPPIMKQWKEVTGHELLERYGMTE 401
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507752|ref|XP_004163121.1| PREDICTED: malonate--CoA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/351 (67%), Positives = 281/351 (80%), Gaps = 23/351 (6%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
MEV K+A K G+ R++VAIRA+QKS+SY QL SSAL+IS LL S+DL+T
Sbjct: 62 MEVVKSAAKHGATCRENVAIRANQKSHSYIQLISSALKISDLLTSSDLRTGHGHLG---- 117
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
GA+IGIVAKPS EF+AGVLGTWFSG +AVPLALSYPE+ELLHV++DS++SM+L
Sbjct: 118 -------GAKIGIVAKPSAEFLAGVLGTWFSGGVAVPLALSYPEAELLHVLNDSEVSMIL 170
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS---QAEKMDGQR--------- 168
STED+ E +Q+VA+K+ A SLIPPVP++ SE DQS + + D R
Sbjct: 171 STEDHVEFMQSVAAKTVATVSLIPPVPHIYSERNSHDQSTNIEVDAADADRVFQGTVENL 230
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
+DPALI+YTSGTTGKPKGVVHTHKSI +QVQML+ AWEYTSADQFLHCLPLHHVHGLFN
Sbjct: 231 SDDPALIIYTSGTTGKPKGVVHTHKSITSQVQMLSNAWEYTSADQFLHCLPLHHVHGLFN 290
Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
LLAP+YAG+TVEFMPKFSV GIW+RWRESYP +++ +AIT FTGVPTMY RL+QGYE
Sbjct: 291 GLLAPIYAGSTVEFMPKFSVSGIWKRWRESYPSKSSKSDDAITVFTGVPTMYARLLQGYE 350
Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
AMD+ELQ ASASAA+QLRLMMCGSSALP P+M+QW+ +TGH LLERYGMTE
Sbjct: 351 AMDSELQLASASAARQLRLMMCGSSALPPPIMKQWKEVTGHELLERYGMTE 401
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2093432 | 544 | AAE13 "acyl activating enzyme | 0.935 | 0.617 | 0.663 | 1.8e-117 | |
| UNIPROTKB|Q4G176 | 576 | ACSF3 "Acyl-CoA synthetase fam | 0.724 | 0.451 | 0.402 | 5.2e-49 | |
| MGI|MGI:2182591 | 583 | Acsf3 "acyl-CoA synthetase fam | 0.724 | 0.445 | 0.391 | 2e-47 | |
| UNIPROTKB|Q58DN7 | 586 | ACSF3 "Acyl-CoA synthetase fam | 0.724 | 0.443 | 0.399 | 5.4e-47 | |
| UNIPROTKB|F1P6L8 | 600 | ACSF3 "Uncharacterized protein | 0.710 | 0.425 | 0.402 | 2.3e-46 | |
| RGD|1586037 | 583 | Acsf3 "acyl-CoA synthetase fam | 0.721 | 0.444 | 0.386 | 3e-46 | |
| UNIPROTKB|F1NXK4 | 456 | ACSF3 "Uncharacterized protein | 0.724 | 0.570 | 0.381 | 1.3e-45 | |
| ASPGD|ASPL0000061619 | 533 | AN0562 [Emericella nidulans (t | 0.713 | 0.480 | 0.392 | 5.6e-45 | |
| UNIPROTKB|I3LK72 | 442 | ACSF3 "Uncharacterized protein | 0.785 | 0.638 | 0.362 | 9.1e-45 | |
| DICTYBASE|DDB_G0289539 | 546 | DDB_G0289539 "Acyl-CoA synthet | 0.738 | 0.485 | 0.378 | 7.3e-43 |
| TAIR|locus:2093432 AAE13 "acyl activating enzyme 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 227/342 (66%), Positives = 265/342 (77%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQXXXXXXXXXXXXXXNDLKTTSEKTKN-EN 59
MEVFKAA+ + S + D +AI+AD KSYSY Q +D ++TK E
Sbjct: 1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60
Query: 60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
L G ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61 FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117
Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
LSTED+ E ++ +A+KSGA+F LIPPV N +SET +Q Q + + G+ +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237
Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXX 297
+ VEF+PKFSV GIW+RWRESYPVN + ++IT FTGVPTMYTRLIQGYEAMD E+Q
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297
Query: 298 XXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTE
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTE 339
|
|
| UNIPROTKB|Q4G176 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 110/273 (40%), Positives = 160/273 (58%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + +V +W SG +AVPL +P ++L +V+ DS S+VL++++Y E+L
Sbjct: 97 RVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELL 156
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
V K G L+P P + + G R + A+I+YTSGTTG+PKGV+
Sbjct: 157 SPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVL 213
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
TH++I A V L W +T D LH LPLHHVHG+ NALL PL+ GAT MP+FS +
Sbjct: 214 STHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQ 273
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQLR 306
+W+++ S I F VPT+YT+L++ Y+ T+ +++R
Sbjct: 274 QVWEKFLSSETPR-------INVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIR 326
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE
Sbjct: 327 LMVSGSAALPLPVLEKWKNITGHTLLERYGMTE 359
|
|
| MGI|MGI:2182591 Acsf3 "acyl-CoA synthetase family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 107/273 (39%), Positives = 160/273 (58%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + +V +W SG +AVPL +PE++L + + DS S+V+ ++Y E L
Sbjct: 97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+A + G L+P P V T Q + G R A+I YTSGTTG+PKG +
Sbjct: 157 SPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
TH+++ A V L +W +T D LH LPLHHVHG+ N LL PL+ GAT +P+FS +
Sbjct: 214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
+W+++ S A + IT F VPT+Y++L+ Y+ T+ +Q K+ +R
Sbjct: 274 QVWEKFLSS------EAPQ-ITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LM+ GS+ALP+P++++W + TGH LLERYGMTE
Sbjct: 327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTE 359
|
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| UNIPROTKB|Q58DN7 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 109/273 (39%), Positives = 160/273 (58%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ ++ FV W SG +AVPL +P ++L + + DS S+VL+ ++ E+L
Sbjct: 98 RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELL 157
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
VA K G L+P P V D + ++ + A+I+YTSGTTG+PKGV+
Sbjct: 158 SPVAQKLGVP--LLPLPPTVYHGVAE-DPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVL 214
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
TH +I A V L W +T D LH LPLHHVHG+ N LL PL+ GAT +P+FS +
Sbjct: 215 STHDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 274
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
+W+++ S A + I F VPT+Y++L+ Y+ T+ +Q ++ +R
Sbjct: 275 LVWEKFLSS------EAPQ-INVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIR 327
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE
Sbjct: 328 LMVSGSAALPLPVLEKWKGITGHTLLERYGMTE 360
|
|
| UNIPROTKB|F1P6L8 ACSF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 112/278 (40%), Positives = 165/278 (59%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + +V +W SG IAVPL +P +EL + + DS S+VL+ ++Y E+L
Sbjct: 102 RVSFLCSNDVSYVVAQWASWMSGGIAVPLYKKHPPAELEYFIRDSRSSVVLAGQEYMELL 161
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG----QRGEDP-ALIVYTSGTTGK 184
+ V K G +P +P +SS TV+ + E +G Q D A+I+YTSGTTG+
Sbjct: 162 RPVVKKLG-----VPLLP-LSS--TVYGAAAEEPGEGKVWEQNWRDRGAMIMYTSGTTGR 213
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
PKGV+ TH +I A V L W ++ D LH LPLHHVHG+ N LL PL+ GAT +P
Sbjct: 214 PKGVLSTHHNIRAMVTGLVHKWAWSKHDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLP 273
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXX 302
+F+ + +W++ + G I F VPT+Y +L+ Y+ T+ +Q
Sbjct: 274 EFNAQLVWEK------LLGCETPR-INVFMAVPTIYAKLMDYYDRHFTQPHVQDFVRAVC 326
Query: 303 KQ-LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
++ +RLM+ GS+ALPLPV+++W++ITGH LLERYGMTE
Sbjct: 327 EERIRLMVSGSAALPLPVLEKWQSITGHTLLERYGMTE 364
|
|
| RGD|1586037 Acsf3 "acyl-CoA synthetase family member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 106/274 (38%), Positives = 164/274 (59%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + +V +W SG +AVPL +PE++L + + DS S+V+ ++Y E L
Sbjct: 97 RVSFLCSNDVSYVIAQWASWMSGGVAVPLYRKHPEAQLEYFIQDSRSSVVVVGQEYLERL 156
Query: 130 QNVASKSGAKF-SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
+A + G L P V + ++E + +Q E+ RG A+I YTSGTTG+PKG
Sbjct: 157 SPLAQRLGVPLLPLTPAVYHGAAEKPI-EQPIQEREWRDRG---AMIFYTSGTTGRPKGA 212
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
+ TH+++ A V L +W +T D LH LPLHHVHG+ N LL PL+ GAT +P+FS
Sbjct: 213 LSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSA 272
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-L 305
+ +W+++ S A + I F VPT+Y++L+ Y+ T+ +Q K+ +
Sbjct: 273 QQVWEKFLSS------EAPQ-INMFMAVPTIYSKLLDYYDRHFTQSHVQDFVRAVCKERI 325
Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
RLM+ GS+ALP+P++++W++ TGH LLERYGMTE
Sbjct: 326 RLMVSGSAALPVPLLEKWKSATGHTLLERYGMTE 359
|
|
| UNIPROTKB|F1NXK4 ACSF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 105/275 (38%), Positives = 158/275 (57%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + +V +W SG IAVPL +P +L +V+ DS ++V++ ++Y +
Sbjct: 88 RISFLCPNDASYVVAQWASWMSGGIAVPLYKKHPVQQLEYVLEDSQSALVIAADEYVGKI 147
Query: 130 QNVASKSGAKFSLIPPVPNVSSE-TTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKG 187
A K G + + S++ T V D A + RG A+I+YTSGTTG+PKG
Sbjct: 148 SPSAKKLGVPVLPLRSHSSGSADHTAVEDVPLASSASWKDRG---AMIIYTSGTTGRPKG 204
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
V+ TH+++ A L E WE+ D LH LPLHHVHG+ N LL PL+ GAT +P+FS
Sbjct: 205 VLSTHENVQAVTTGLVEKWEWKQDDVILHVLPLHHVHGVINKLLCPLWVGATCIMLPEFS 264
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQ 304
+ +W+++ S ++ F VPT+Y +LI+ Y+ ++ Q +
Sbjct: 265 AQMVWKKFLSSQ-------APRVSVFMAVPTIYAKLIEYYDEHFSQPQVQDFVRAFCQEN 317
Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+RLM+ GS+ALP+PV+++W+ ITGH LLERYGMTE
Sbjct: 318 IRLMVSGSAALPVPVLKKWKAITGHTLLERYGMTE 352
|
|
| ASPGD|ASPL0000061619 AN0562 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 108/275 (39%), Positives = 147/275 (53%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL---STEDYR 126
RI + +++ W SG I VPL S+P ELL+ + DSD S+++ + E +
Sbjct: 69 RIAFLVPNGYDYAVTQWAVWASGGICVPLCTSHPVKELLYTIGDSDPSLIIIHPAFEKFE 128
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
L+ + + F + P S + + S E AL++YTSGTTGKPK
Sbjct: 129 APLREGTADTPRLFMTLTPFTQSPSPPQLPEFSPV-----YYPERRALMIYTSGTTGKPK 183
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + THK+I Q Q L +AW+Y D +H LPLHH+HG+ N L A L AGATVE PKF
Sbjct: 184 GAITTHKTITFQAQCLIQAWQYQPTDHLIHVLPLHHIHGIINGLTATLLAGATVEMYPKF 243
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--MDTELQXXXXXXXKQ 304
IW RW N+ T F VPT+Y+RL+ +EA TE +
Sbjct: 244 DPATIWTRWT-------NKGSS--TMFFAVPTIYSRLVDYFEAHIRGTEQETPAREGAAA 294
Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LRL++ GS+ALP P+ ++ TIT LLERYGMTE
Sbjct: 295 LRLLVSGSAALPTPIKTKFATITNQTLLERYGMTE 329
|
|
| UNIPROTKB|I3LK72 ACSF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 109/301 (36%), Positives = 166/301 (55%)
Query: 47 DLKTTSEKTKNENSAVLAGGCG----ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
DL + S + E A+ A G R+ ++ +V + TW SG +AVPL +
Sbjct: 72 DLYSRSLRLSREICALRACADGDLREERVSLLCANDASYVVALWATWMSGGVAVPLYRKH 131
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQA 161
P ++L + + DS S+VL+ ++ VL V K G L+P P V +
Sbjct: 132 PPAQLEYFIRDSRSSVVLAGPEHAGVLGPVVGKLGVP--LLPLSPEVYLGAAEAPGAGRV 189
Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
+ D ++ A I+YTSGTTG+PKG++ TH++++A V L W +T D LH LPLH
Sbjct: 190 PERDWRKRA--ATIIYTSGTTGRPKGLLSTHRNLEAVVTGLVRKWAWTQDDVILHVLPLH 247
Query: 222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
HVHGL N LL PL+ GA +P+FS + +W+++ P + F VPT+Y+
Sbjct: 248 HVHGLVNKLLCPLWVGAACVMLPEFSAQQVWEKFLS--P-----EAPRVNVFMAVPTIYS 300
Query: 282 RLIQGYEAMDTELQXXXXXXX---KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
+L+ ++ T+ +++RLM+ GS+ALPLPV+++WE +TGH LLERYGMT
Sbjct: 301 KLMDYHDRHFTQPHVRDFVRAVCEEKIRLMVSGSAALPLPVLEKWEGVTGHTLLERYGMT 360
Query: 339 E 339
E
Sbjct: 361 E 361
|
|
| DICTYBASE|DDB_G0289539 DDB_G0289539 "Acyl-CoA synthetase family member 3, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 104/275 (37%), Positives = 155/275 (56%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ +F++V G W +G AVPLALS+P EL + + +S SM+L+ + +
Sbjct: 64 RVAYFFGQNFDYVRSQWGIWAAGGTAVPLALSHPIHELQYTIENSKSSMILTNSENYSKM 123
Query: 130 QNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + + IP V + S+ + + + +D R ALI+YTSGTT KPK
Sbjct: 124 KEIGTNLNIPVIEIPKVGEYTIPKSQWSSMEDYKQYSIDSNRN---ALIIYTSGTTSKPK 180
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
GVV TH +I+AQ+Q L + W++T D L LPLHHVHG+ N + L++GA E MPKF
Sbjct: 181 GVVTTHANIEAQIQTLVDYWKWTEKDHILEVLPLHHVHGVINVVSCALWSGAICEMMPKF 240
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ--GYEAMDTELQXXXXXXXKQ 304
+ + R ES ++ + + I+ F VPT+Y++LI+ D + K+
Sbjct: 241 DSKQVVDRLLES-GISTD-LDQPISLFMAVPTIYSKLIKYVNENITDPTERLAIENAFKR 298
Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
LRLM+ GSSALP V +++ I+G LLERYGMTE
Sbjct: 299 LRLMVSGSSALPESVRNEFQAISGQVLLERYGMTE 333
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H151 | AAE13_ARATH | 6, ., 2, ., 1, ., n, 3 | 0.6979 | 0.9387 | 0.6194 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh1_pm.C_scaffold_3001408 | annotation not avaliable (608 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-106 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-54 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-52 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 6e-51 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-46 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-46 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 7e-43 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 6e-38 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 8e-35 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-34 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 5e-34 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-33 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-33 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 8e-33 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-32 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-32 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-32 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-29 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-27 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 5e-27 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-26 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-26 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 5e-26 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-25 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-25 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-25 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-25 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 4e-25 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-24 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 6e-24 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-23 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-22 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-22 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-22 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-21 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-21 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 4e-21 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 5e-21 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 7e-21 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 5e-20 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-19 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-19 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-19 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-18 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-18 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-18 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 8e-18 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 9e-18 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-17 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-17 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-17 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-17 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-17 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-17 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-16 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-16 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-16 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-16 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-16 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 3e-16 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-16 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-14 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 8e-14 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 9e-14 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-13 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-13 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-13 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-13 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 7e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 9e-13 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-12 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-12 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-12 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 2e-12 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-12 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-12 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 3e-12 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 4e-12 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 5e-12 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-12 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 6e-12 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 6e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 9e-12 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 9e-12 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-11 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-11 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-11 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-11 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-11 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 5e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-11 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 7e-11 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-10 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-10 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 2e-10 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-10 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-10 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-09 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-09 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-09 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-09 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 2e-09 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-09 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-09 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 3e-09 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-09 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-09 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 4e-09 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-09 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 4e-09 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-09 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 5e-09 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 5e-09 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 6e-09 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 6e-09 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-09 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-09 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 9e-09 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-08 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 6e-08 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 8e-08 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 8e-08 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 9e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-07 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 3e-07 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 4e-07 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 4e-07 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 6e-07 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 8e-07 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 8e-07 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 1e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-06 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 8e-06 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 9e-06 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-05 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 1e-05 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-05 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-05 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 6e-05 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 8e-05 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 8e-05 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 3e-04 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 6e-04 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 9e-04 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 0.001 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.002 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 0.002 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 0.002 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.002 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 0.003 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-106
Identities = 123/324 (37%), Positives = 172/324 (53%), Gaps = 82/324 (25%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D +A+ +S +Y +L + + R++ L + L G R+ ++A
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLP-----------------GDRVAVLA 43
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S E+V L W +G +AVPL SYP +EL +++ DS S+++
Sbjct: 44 PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
DPALI+YTSGTTG+PKGVV TH ++
Sbjct: 89 -----------------------------------DPALIIYTSGTTGRPKGVVLTHGNL 113
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
A + L EAW +T++D LH LPLHHVHGLFNAL PL+AGA+VEF+P+F +
Sbjct: 114 AANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQ------ 167
Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
+ R IT F GVPT+YTRL++ YE D A+A+AA+ LRL + GS+AL
Sbjct: 168 ----ERDALRLLPRITVFMGVPTIYTRLLEHYEFDD-----AAAAAARNLRLFVSGSAAL 218
Query: 316 PLPVMQQWETITGHRLLERYGMTE 339
P+PV+++WE TGH LLERYGMTE
Sbjct: 219 PVPVLERWEERTGHTLLERYGMTE 242
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-54
Identities = 86/339 (25%), Positives = 142/339 (41%), Gaps = 47/339 (13%)
Query: 16 DSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
D A+ + +Y +L A R+++ L + +K G R+ I
Sbjct: 26 DRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKP-----------------GDRVAI 68
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
+ S EF+ L +G +AVPL EL ++++D+ +++++ ++ +L+ VA
Sbjct: 69 LLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA 128
Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD------GQRGEDPALIVYTSGTTGKPKG 187
++ + AE +D A ++YTSGTTG PKG
Sbjct: 129 EALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKG 188
Query: 188 VVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP- 244
VV TH+++ A + A T D L LPL H+ GL LLAPL G T+ +
Sbjct: 189 VVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP 248
Query: 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
F + E Y V T +GVPT L+ + +
Sbjct: 249 EPFDPEEVLW-LIEKYKV---------TVLSGVPTFLRELLD-------NPEKDDDDLSS 291
Query: 304 QLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGC 341
LRL++ G + LP +++++E G +LE YG+TE
Sbjct: 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETS 330
|
Length = 534 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-52
Identities = 85/321 (26%), Positives = 133/321 (41%), Gaps = 42/321 (13%)
Query: 28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
+Y +L A R+++ L + + G R+ I+ S E+V +L
Sbjct: 1 TYRELDERANRLAAALRALGVGP-----------------GDRVAILLPNSPEWVVAILA 43
Query: 88 TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
+G VPL S P L +++ DS+ ++++ ++ L V K +LI
Sbjct: 44 VLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD 103
Query: 148 NVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
+ + D S +D A I+YTSGTTGKPKGV+ TH+++ A L
Sbjct: 104 DGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGL 163
Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR-GIWQRWRESYPV 261
E + T D+ L LPLH G + PL AG T+ +PKF++ E Y V
Sbjct: 164 AERFGLTPGDRVLLLLPLHF-DGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222
Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321
T GVPT+ L+ + LRL++ G LP +++
Sbjct: 223 ---------TVLYGVPTLLRLLL--------KAPEEKKYDLSSLRLVLSGGEPLPPELLR 265
Query: 322 QWETITGH-RLLERYGMTEGC 341
+ G L+ YG TE
Sbjct: 266 RLRERFGGVPLVNGYGPTETT 286
|
Length = 412 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 6e-51
Identities = 84/329 (25%), Positives = 133/329 (40%), Gaps = 69/329 (20%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+ + +Y +L + R ++ L +K G R+ ++
Sbjct: 14 DRPALTFFGRKLTYAELDELSDRFAAYLQQLGVK-----------------KGDRVALML 56
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+F G +G + VP+ Y EL H ++DS +++ + + L
Sbjct: 57 PNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDAL-----A 111
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
SGA L + +D A++ YT GTTG PKG + TH+++
Sbjct: 112 SGAPLPLPVELS---------------------PDDLAVLQYTGGTTGVPKGAMLTHRNL 150
Query: 196 DAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI-- 251
A VQ + D+FL LPL H+ GL +L L GAT +P F +
Sbjct: 151 VANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK 210
Query: 252 -WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
+R+R T F GVPT+Y L+ E + LRL +
Sbjct: 211 EIKRYR-------------FTIFPGVPTLYNALLNHPEFKKYDF--------SSLRLCIS 249
Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTE 339
G + LP+ V +++E TG L+E YG+TE
Sbjct: 250 GGAPLPVEVAERFEEKTGAPLVEGYGLTE 278
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 1e-46
Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 49/341 (14%)
Query: 6 AAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLA 64
A + RD+ I D Y+Y L +++ R+++LL + +K
Sbjct: 7 DALRAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKP-------------- 52
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
G R+ + + S E +A L T +G + +PL +Y +EL + + D++ ++V+
Sbjct: 53 ---GDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPA 109
Query: 125 YREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQAEKMDGQ----RGEDPALIVYT 178
L +A+ +GA +L + ++ + + A D + +D A I+YT
Sbjct: 110 NFAWLSKIAAAAGAPHVETL-----DADGTGSLLEAAAAAPDDFETVPRGADDLAAILYT 164
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SGTTG+ KG + +H ++ + L + W +T D +H LP+ H HGLF A L AGA
Sbjct: 165 SGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
++ F+PKF + + T GVPT YTRL+Q + L +
Sbjct: 225 SMIFLPKFDPDAVLALMPRA------------TVMMGVPTFYTRLLQ-----EPRL---T 264
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
AA +RL + GS+ L ++++ TGH +LERYGMTE
Sbjct: 265 REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTE 305
|
Length = 504 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-46
Identities = 103/331 (31%), Positives = 149/331 (45%), Gaps = 65/331 (19%)
Query: 11 GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA- 69
+ A + A+R + S LA +A +AV GA
Sbjct: 10 AAAADIADAVRIGGRVLSRSDLAGAA-----------------------TAVAERVAGAR 46
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREV 128
R+ ++A P+ V V+G +G VP+ +E H++ DS L D
Sbjct: 47 RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG 106
Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
L +V + A+ P P+ + PALIVYTSGTTG PKGV
Sbjct: 107 LPHVPVRLHARSWHRYPEPDPDA--------------------PALIVYTSGTTGPPKGV 146
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
V + ++I A + L EAW++T+ D +H LPL HVHGL +L PL G + +
Sbjct: 147 VLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTP 206
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
E+Y + G T + GVPT+++R+ A D E A A RL+
Sbjct: 207 --------EAYAQALSEGG---TLYFGVPTVWSRI-----AADPEAARALRGA----RLL 246
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+ GS+ALP+PV + +TGHR +ERYGMTE
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTE 277
|
Length = 471 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 7e-43
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
DPA I+YTSGTTGKPKGVV +H+++ A Q L +A T D L LPL HV G + L
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
L L AG TV F + E Y +T GVPT+Y L + E
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQY---------RVTVLFGVPTLYDALAKAAEDR 111
Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQS 350
+L +S LRL++ G L +++++E G +LE YG+TE
Sbjct: 112 GYDL--SS------LRLLISGGEPLSPELLERFEERPGAPILEGYGLTE-------TSVV 156
Query: 351 TSWCSGQD 358
TS +
Sbjct: 157 TSTNPDSE 164
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-38
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+DPALI+YTSGTTG+PKGV+ TH+++ A + + D +L PL+H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59
Query: 230 LLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
LL L AG TV MPKF + +R R +T VPTM+ RL++
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAVLDLIERHR-------------VTHTFLVPTMFQRLLRL 106
Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
+ +L + LRL++ G++ +P + + G ++ YGMTE
Sbjct: 107 PDFARYDLSS--------LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETG 153
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 8e-35
Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 44/300 (14%)
Query: 57 NENSAVLA------GGCGA--RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELL 108
+E + LA GG G R+ ++ + S E V +L +G VPL +YP L
Sbjct: 6 DERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLA 65
Query: 109 HVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKM--DG 166
++ D+ ++L+ L + +P + E D + A
Sbjct: 66 FILEDAGARLLLTDSALASRLAGLV---------LPVILLDPLELAALDDAPAPPPPDAP 116
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
+D A ++YTSG+TG+PKGVV TH+S+ + L + D+ L L +
Sbjct: 117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASV 176
Query: 227 FNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
+ L AGAT+ P+ + +PV T P++ L
Sbjct: 177 E-EIFGALLAGATLVVPPEDEERDDAALLAALIAEHPV---------TVLNLTPSLLALL 226
Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEGCT 342
AA A LRL++ G AL ++ +W G RL+ YG TE
Sbjct: 227 A-----------AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTV 275
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 17/170 (10%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+DPALI++TSGTTG+PKGV THK++ A + + ++ + T +D+ L+ +PL H+HGL +
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
LLA L AG +V PKFS W + T ++ VPT++ L++ +
Sbjct: 62 LLATLLAGGSVVCPPKFSASKFWDDIAKYRV----------TWYSAVPTIHQILLKTAK- 110
Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+LR + S+ LP V+ + E G +LE YGMTE
Sbjct: 111 ------PNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTE 154
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-34
Identities = 56/173 (32%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+DPALI YTSGTTG+PKG + TH+++ + T D+ L +PL HV GL
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
+LA L AGAT+ M KF + E ITA GVPTM+ L+
Sbjct: 62 VLASLTAGATLVLMEKFDPGAALRLIER----------ERITALHGVPTMFIALL----- 106
Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEGC 341
E LR + G + +P ++++ + YGMTE
Sbjct: 107 ---EHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETS 156
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 83/349 (23%), Positives = 137/349 (39%), Gaps = 49/349 (14%)
Query: 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAV 62
+ +AA + G D A + +Y +L + R ++ L A
Sbjct: 11 LARAARRFG----DKEAYVFGDQRLTYAELNARVRRAAAAL-----------------AA 49
Query: 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
L G G R+ I A S +V LG +G + VPL Y E +++ D +
Sbjct: 50 LGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVL 109
Query: 123 ED----YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-----SQAEKMDGQRGEDPA 173
+ + + + F AE+ +D A
Sbjct: 110 GLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVA 169
Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233
I++TSGTTG+PKG + TH+ + + E T D++L P HV G + AP
Sbjct: 170 DILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAP 229
Query: 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
L GAT+ +P F +++ E IT G PTMY L+Q
Sbjct: 230 LMRGATILPLPVFDPDEVFRLIET----------ERITVLPGPPTMYNSLLQ-------- 271
Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGC 341
SA LRL + G++++P+ +++++E+ G +L YG++E
Sbjct: 272 HPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEAS 320
|
Length = 513 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 86/324 (26%)
Query: 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
++ ++ +LA R+++ L L G R+ I+A+ E+V
Sbjct: 4 QTITWAELAERVRRLAAGL-----------------IALGVKPGDRVAILAENRPEWVIA 46
Query: 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
L +G + VP+ + E+ ++++DS +V ED
Sbjct: 47 DLAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVF-VED-------------------- 85
Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
+ +D A ++YTSGTTG PKGV+ TH+++ AQ L E
Sbjct: 86 -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLE 122
Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264
+ D+ L LPL HV PL +GA V F S + + RE
Sbjct: 123 VIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLRE------- 173
Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---------QLRLMMCGSSAL 315
T F VP ++ ++ Y ++ ++ AA K +LR + G + L
Sbjct: 174 ---VRPTVFFAVPRVWEKI---YAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPL 227
Query: 316 PLPVMQQWETITGHRLLERYGMTE 339
P V++ + + G +LE YG+TE
Sbjct: 228 PPEVLEFFRAL-GIPILEGYGLTE 250
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 70/342 (20%), Positives = 135/342 (39%), Gaps = 59/342 (17%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+ D + +Y +L R+++ L + +K G R+ +
Sbjct: 21 DKEAVYFDGRRTTYAELDERVNRLANALRALGVKK-----------------GDRVAVFD 63
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S E++ G + P+ + E+ ++++D++ +VL ++ +L + +
Sbjct: 64 WNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ 123
Query: 136 SGAKFSLIPPVPNV-------SSETTVFDQSQAEKMDGQRGEDP---------ALIVYTS 179
+P V V ++ E + A ++YTS
Sbjct: 124 -------LPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTS 176
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
GTTG PKGVV +H+++ + + + D +L +P+ HVH L AGA
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMAGAK 235
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
+F + E +T F VPT++ L++ A + +
Sbjct: 236 QVIPRRFDPENLLDLIET----------ERVTFFFAVPTIWQMLLKAPRAYFVDFSS--- 282
Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
LRL++ G +ALP ++++++ G L++ YGMTE
Sbjct: 283 -----LRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETS 319
|
Length = 521 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 27/221 (12%)
Query: 28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
+Y +L A I++ L + G G R+ ++A P +FVA G
Sbjct: 25 TYAELDRRARAIAARLQA------------------LGAPGDRVLLLAPPGLDFVAAFFG 66
Query: 88 TWFSGCIAVPLALSYPESE----LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI 143
++G IAVP L ++ D+ VL+T L+ + A
Sbjct: 67 CLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAA----- 121
Query: 144 PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT 203
+ ++++ + + +D A + YTSG+TG PKGV+ TH ++ A ++ +
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181
Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
A+ D + LPL+H GL LL PLYAG V M
Sbjct: 182 RAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMS 222
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 74/368 (20%), Positives = 128/368 (34%), Gaps = 76/368 (20%)
Query: 27 YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
+Y +L ++S L S + G R+ I A E+ L
Sbjct: 46 ITYRELYERVRALASGLLSLGIPA-----------------GDRVAIFAANRPEWAIADL 88
Query: 87 GTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREVLQNVASKSGAKFSLIPP 145
G ++VP+ + +L +++++S+ ++ ++ +++ V LI
Sbjct: 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVI 148
Query: 146 V-----------------PNVSSETTVFDQSQAEKMDGQR-GEDPALIVYTSGTTGKPKG 187
+ P+ + D + E +D A I+YTSGTTG PKG
Sbjct: 149 IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKG 208
Query: 188 VVHTHKSIDAQVQMLTEAWEY----TSADQFLHCLPLHHVHGLFNALLAPLYAGATV--- 240
V+ TH+++ AQV E D+ L LPL H+ LY G TV
Sbjct: 209 VMLTHRNLLAQV---AGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK 265
Query: 241 -----------EFMPKF--SVRGIWQRWRE-------SYPVNGNRAGEAITAFTGVPTMY 280
E P V +W++ + P + A
Sbjct: 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR--WALKVAYKKI 323
Query: 281 TRLIQGYEAMDTELQA-------ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
+R + G + L A + ++R + G + L P + + G +LE
Sbjct: 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLS-PELLHFFRSLGIPILE 382
Query: 334 RYGMTEGC 341
YG+TE
Sbjct: 383 GYGLTETS 390
|
Length = 613 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 88/328 (26%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D+VA+ +S +Y +L A R++ L G G + I
Sbjct: 2 DAVAVVFGDQSLTYRELNERANRLAHYL-----------------RARGVGPGDLVAICL 44
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S E V +L +G VPL +YP L +++ DS ++L+ D
Sbjct: 45 ERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----------- 93
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
D A ++YTSG+TG+PKGV+ H+ +
Sbjct: 94 -----------------------------------DLAYVIYTSGSTGRPKGVMVEHRGL 118
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIW 252
+ L E + T+ D+ L ++ + PL +GAT+ P +
Sbjct: 119 VNLLAWLQERYGLTAGDRVLQFASFSFDASVW-EIFPPLLSGATLVLAPPEVLRDPEALA 177
Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
+ RE IT VP++ L L A +A LRL++ G
Sbjct: 178 ELLRE----------HRITVLHLVPSLLRAL----------LDALEPAALPSLRLVIVGG 217
Query: 313 SALPLPVMQQW-ETITGHRLLERYGMTE 339
ALP ++++W E G RL+ YG TE
Sbjct: 218 EALPAELVRRWRELFPGARLVNAYGPTE 245
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 74/281 (26%), Positives = 115/281 (40%), Gaps = 74/281 (26%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ + + S +FV +G + VP+ E+EL H+++DS +++
Sbjct: 26 GDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIV------ 79
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
G +D A+I YTSGTTG PKG
Sbjct: 80 --------------------------------------GSELDDVAVIPYTSGTTGLPKG 101
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
+HTH+++ A T L LPL HV G+ ++ AP+Y GAT+ +
Sbjct: 102 CMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT--- 158
Query: 248 VRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
RW RE+ A AI T +T + TM L+ D +L +
Sbjct: 159 ------RWDREA-------AARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSS----- 200
Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCT 342
L+++ G +ALP V ++ + +TG E YG+TE T
Sbjct: 201 ---LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHT 238
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 83/348 (23%), Positives = 132/348 (37%), Gaps = 74/348 (21%)
Query: 18 VAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
I AD ++ L ALR++ L LK G + +++
Sbjct: 1 ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQ-----------------GDVVALISP 43
Query: 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
S EF LG +G I SY EL H + S ++ D + ++ A +
Sbjct: 44 NSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKEL 103
Query: 137 GAKFSLI---------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
G +I + ++ + +D A ++Y+SGTTG PKG
Sbjct: 104 GPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKG 163
Query: 188 VVHTHKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
V+ +HK+I A QVQ + +S D L LP +H +GL L + L GATV MP
Sbjct: 164 VMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLC-GATVIIMP 222
Query: 245 KFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
KF + I ++++ +T+ VP + L A + S
Sbjct: 223 KFDSETFLKLI-EKYK-------------VTSLFLVPPIAVAL-----AKSPLVDKYDLS 263
Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLER---------YGMTE 339
+ LR++ G++ L + L +R YGMTE
Sbjct: 264 S---LRVIFSGAAPLSKEL--------QEELRKRFPNTTIKQGYGMTE 300
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-27
Identities = 79/335 (23%), Positives = 144/335 (42%), Gaps = 49/335 (14%)
Query: 9 KKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG 68
K+ + D +AI +++ +Y QL ++++ L +L G
Sbjct: 10 KRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYL-IYELNVKK---------------G 53
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI I+++ S E++ + CIAVPL + E+EL+ + DS +++ + +
Sbjct: 54 ERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF--- 110
Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
QN+A + + +++S + D+ ++ +I YTSGTTGKPKG
Sbjct: 111 -QNMALSMQKVSYVQRVI-SITSLKEIEDRKIDNFVEKN-ESASFIICYTSGTTGKPKGA 167
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV----EFMP 244
V T +++ T A + T D+ + LPL H+ G+ L+AG + +F P
Sbjct: 168 VLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEP 227
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
++ I + +T GVPT++ LI + T LQ+
Sbjct: 228 TKALSMIEK--------------HKVTVVMGVPTIHQALINCSKFETTNLQS-------- 265
Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+R G + P +M+++ G + +GMTE
Sbjct: 266 VRWFYNGGAPCPEELMREFID-RGFLFGQGFGMTE 299
|
Length = 496 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 77/338 (22%), Positives = 132/338 (39%), Gaps = 57/338 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D +A+ D S +Y +L R N L+ + +N R+ ++
Sbjct: 20 DKIALYYDDGSLTYGELQEEVNR-----WGNALRELGIEREN------------RVLLIL 62
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ EF G G + VP+ + + ++DS +++ +E+ EVL+ K
Sbjct: 63 LDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQK 122
Query: 136 --SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVVHT 191
++ + + AE+++ +D A +Y+SG+TG+PKGVVH
Sbjct: 123 DPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHL 182
Query: 192 HKSID-------AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
H + V +TE D L +GL N L PL GAT MP
Sbjct: 183 HHDMLVTAEAYAKNVLGITE------DDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMP 236
Query: 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
+ + ++ P T F GVPT+Y ++ E + +L
Sbjct: 237 ERPTPDAVFATIERYKP----------TVFFGVPTLYAAMLAAPEKPERDL--------- 277
Query: 304 QLRLMMCGSSALPLP--VMQQWETITGHRLLERYGMTE 339
L +C S+ LP + +W+ + G +L+ G TE
Sbjct: 278 -SSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTE 314
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 77/327 (23%), Positives = 123/327 (37%), Gaps = 46/327 (14%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D+VA+ + +Y +L + A R++ LL S L G G + I+A
Sbjct: 242 DAVALVRGGQQLTYAELDARANRLARLLIS-----------------LGVGPGETVAILA 284
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S E V +L +G VPL YP L +++ DS +++L+ R
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRV-------- 336
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
+ +S QA G+ A I+YTSG+TG+PKGV H+++
Sbjct: 337 DDVGLPGLALDDALSEIPDTDPIPQALL-----GDALAYIIYTSGSTGQPKGVRIEHRAL 391
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
+ + + D+ L L +F + L GA + P
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALL 450
Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
+ IT VP + L + L S ++LR ++ G AL
Sbjct: 451 ELL-------EAQGITVLLLVPLLLRLL------LLAALAPDLISPCERLRQLLSGGEAL 497
Query: 316 PLPVMQQWETI--TGHRLLERYGMTEG 340
PL ++Q+ + RLL YG TE
Sbjct: 498 PLALVQRLLQLAALARRLLNLYGPTEA 524
|
Length = 642 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ---FLHCLPLHHVHGL 226
+D ALI+YTSGTTGKPKG TH+++ A +AW D L LP+ H +GL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQ-GKAWVPGLGDGPERVLAALPMFHAYGL 277
Query: 227 -FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
LA G + +P + I ++ P T GVP +Y ++ +
Sbjct: 278 TLCLTLAV-SIGGELVLLPAPDIDLILDAMKKHPP----------TWLPGVPPLYEKIAE 326
Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
E +L +R G+ ALP+ ++ WE +TG L+E YG+TE
Sbjct: 327 AAEERGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTE 372
|
Length = 573 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 63/274 (22%), Positives = 98/274 (35%), Gaps = 69/274 (25%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++ EF+ G +AVP+ + EL H++ S +++
Sbjct: 28 GDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIVV------ 81
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
D A I+YTSGTTG PKG
Sbjct: 82 -------------------------------------------DTAAILYTSGTTGPPKG 98
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
V+ TH + ++ D L LPL H++ ++ A L GAT+ +P+FS
Sbjct: 99 VLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFS 158
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
W + R+ A T F + M L++ + D LR
Sbjct: 159 ASRFWDQVRKH------GA----TVFNLLGAMAAILMKQPPSPD--------DRDHPLRF 200
Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
+ LP + +E G +L+E YGMTE
Sbjct: 201 VFGA--PLPAAIWPAFEERFGVKLVEGYGMTETG 232
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 88/361 (24%), Positives = 137/361 (37%), Gaps = 81/361 (22%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D AI ++ SY +L A R++ L G R+ +
Sbjct: 25 DKTAIVFYGRAISYRELLEEAERLAGYL----------------QQECGVRKGDRVLLYM 68
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S +FV + + VP+ E EL H + DS + + + +
Sbjct: 69 QNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGN 128
Query: 136 SG------AKFS----------------LIPPVPNVSSETTVF------DQSQAEKMDGQ 167
A++S PP+ ++ V
Sbjct: 129 LRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG 188
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGL 226
+D A++ YTSGTTG PKG +HTH+++ A + + W T L LPL HV G+
Sbjct: 189 P-DDLAVLPYTSGTTGVPKGCMHTHRTVMANA-VGSVLWSNSTPESVVLAVLPLFHVTGM 246
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMY 280
+++ AP+YAGATV MP RW RE+ A I T +T +PTM
Sbjct: 247 VHSMNAPIYAGATVVLMP---------RWDREA-------AARLIERYRVTHWTNIPTMV 290
Query: 281 TRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
+ G D LR + G +A+P V ++ + +TG +E YG+T
Sbjct: 291 VDFLASPGLAERDL----------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLT 340
Query: 339 E 339
E
Sbjct: 341 E 341
|
Length = 546 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 66/275 (24%), Positives = 111/275 (40%), Gaps = 41/275 (14%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G+R+ +V + S E V + G L E+E + + D D+ ++L+
Sbjct: 24 GSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD----- 78
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
+ + + + + A +++TSGTTGKPK
Sbjct: 79 ----------SLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
V HT ++ A E +T D +L LPL+H+ GL + L L GAT+ + KF+
Sbjct: 129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN 187
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
+ A E +T + VPT RL+ + LR
Sbjct: 188 ------------QLLEMIANERVTHISLVPTQLNRLLD------------EGGHNENLRK 223
Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGCT 342
++ G SA+P P++++ + G + YGMTE C+
Sbjct: 224 ILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCS 257
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 82/332 (24%), Positives = 128/332 (38%), Gaps = 45/332 (13%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
A D S SY +L + R L+ K + R+ ++
Sbjct: 20 GKTAFIDDISSLSYGELEAQVRR-----LGAALRRLGVKREE------------RVLLLM 62
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+F LG +G + V L + +++ DS +V + + V++ K
Sbjct: 63 LDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK 122
Query: 136 SGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
S + P V + +S+ K + +DPA +Y+SG+TG PKGVVHT
Sbjct: 123 SPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHT 182
Query: 192 HKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVR 249
H + ++ D L +GL NAL P+ GAT M + +
Sbjct: 183 HSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
++ R R P T F GVPT Y AM L + A Q+RL +
Sbjct: 243 AVFDRLRRHQP----------TIFYGVPT-------LYAAM---LADPNLPAEDQVRLRL 282
Query: 310 CGSSALPLP--VMQQWETITGHRLLERYGMTE 339
C S+ LP V Q+W+ G +++ G TE
Sbjct: 283 CTSAGEALPAEVGQRWQARFGVDIVDGIGSTE 314
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 66/330 (20%), Positives = 117/330 (35%), Gaps = 53/330 (16%)
Query: 23 DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
+ +Y L R+++ L L G G R+ I S E V
Sbjct: 37 LFRELTYGDLRREVARLANAL-----------------KDLGGVKGDRVAIYMPNSPEAV 79
Query: 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
+L T G I ++ + + D ++++ + + +A A ++
Sbjct: 80 IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDAD-AV 138
Query: 143 IPPVPNVSSETTVFDQSQA--------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ V V +D++ E + +DP ++YTSGTTGKPKG+VH+H
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFEPLPA---DDPLFLLYTSGTTGKPKGIVHSHGG 195
Query: 195 IDAQVQMLTEAWEYTSADQFLHCL-PLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGI 251
+ ++ + ++GL+ ++ +PL +GAT F
Sbjct: 196 YLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPER 255
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
E Y +T F PT RL ++ L + G
Sbjct: 256 LWEALEKY---------KVTIFGTSPTFLRRL----------MKLGLGEPYDLSSLRVLG 296
Query: 312 SSALPLP--VMQQWETITGHRLLERYGMTE 339
S+ PL + + + G +L+ YG TE
Sbjct: 297 SAGEPLNPEAFEWFYSALGVWILDIYGQTE 326
|
Length = 528 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 59/181 (32%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
+D A +T GTTG PK H+H++ A M D L+ LPL HV G
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60
Query: 229 ALLAPLYAGATV------EFMPKFSVRGIWQ---RWRESYPVNGNRAGEAITAFTGVPTM 279
LAPL GATV F V W+ R+R +T + VPT+
Sbjct: 61 TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYR-------------VTLLSAVPTV 107
Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
L+Q L A S LR + G++ LP+ V +++E +TG ++E YGMTE
Sbjct: 108 LAALLQ------VPLGDADIS---SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTE 158
Query: 340 G 340
G
Sbjct: 159 G 159
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
D AL++YTSGTTG+PKGV+HTH ++ A+V+ E T D L PL H+ G L
Sbjct: 94 DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGL 153
Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
PL GATV ++ + RE +T G L+
Sbjct: 154 ELPLLLGATVVLQDRWDPARALELIRE----------HGVTFTMGATPFLADLL------ 197
Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCT 342
A+ LR+ +CG + +P + ++ G +++ YGMTE
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPL 247
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 77/328 (23%), Positives = 121/328 (36%), Gaps = 89/328 (27%)
Query: 17 SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
A ++S +Y +L A R +++L L G R+ ++
Sbjct: 1 KTAFYCGEQSLTYRELHDLANRFANVL-----------------RALGVSPGDRVLLLLP 43
Query: 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
S E VA L +G +AV L +L H++ DS +++ V
Sbjct: 44 DSPELVAAFLACLKAGAVAVALNPLLTPQDLEHILDDSGAALL------------VTE-- 89
Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID 196
+D A +YTSGTTGKPKGV+H H+
Sbjct: 90 --------------------------------ADDIAYWLYTSGTTGKPKGVMHRHRDPL 117
Query: 197 AQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGI 251
+ E D+ L +GL N+LL PL++GA+ +P + +V +
Sbjct: 118 TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDL 177
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
R R T GVP +Y L++ A SA + +RL +
Sbjct: 178 LARHRP-------------TVLFGVPALYRALLES--------GAGSAPLFRSVRLCVSA 216
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTE 339
ALP + ++W TG +L+ G TE
Sbjct: 217 GEALPAGLAERWAEATGIEILDGIGSTE 244
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 31/182 (17%)
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
+D A +T GTTG PK HTH + A + D LPL HV+ L
Sbjct: 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALL 270
Query: 228 NALLAPLYAGATVEFMPKFSVRG------IW---QRWRESYPVNGNRAGEAITAFTGVPT 278
LAPL GA V RG W +R+R I +GVPT
Sbjct: 271 VTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYR-------------INFLSGVPT 317
Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
+Y L + + S+ LR +CG++ LP+ V +++E TG R++E YG+T
Sbjct: 318 VYAAL------LQVPVDGHDISS---LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368
Query: 339 EG 340
E
Sbjct: 369 EA 370
|
Length = 632 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-22
Identities = 77/339 (22%), Positives = 128/339 (37%), Gaps = 46/339 (13%)
Query: 12 SMAR--DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
S R D A+ +S++Y +L ++ R+++ L LK G
Sbjct: 20 SARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKK-----------------GD 62
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + S + L +G + VP+ EL +++ S L
Sbjct: 63 RVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTA 122
Query: 130 QNVASKSGAKFSL----IPPVPNVSSETTVFD----QSQAEKMDGQRGEDPALIVYTSGT 181
+ + + + D S AE +D A I+YTSGT
Sbjct: 123 EAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGT 182
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
PKG + TH+++ A+ A + ++ D LH LPL+H L L LY GAT
Sbjct: 183 ESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNV 242
Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
+ I + E IT+F PT++ L++ + +L +
Sbjct: 243 ILDAPDPELILRTI----------EAERITSFFAPPTVWISLLRHPDFDTRDLSS----- 287
Query: 302 AKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
LR G+S +P+ V+++ E + G R YG TE
Sbjct: 288 ---LRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTE 323
|
Length = 523 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 68/279 (24%), Positives = 98/279 (35%), Gaps = 83/279 (29%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++AK S EF+ L G + +PL P+ EL
Sbjct: 26 GDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQEEL-------------------- 65
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
Q + + PA I++TSG+TGKPK
Sbjct: 66 -------------------------QQQLADLQPD------LDRPATIIFTSGSTGKPKA 94
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
VVHT + A + E T D +L LPL HV GL ++ L AG + KF
Sbjct: 95 VVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFD 153
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
I E++ V T + VPT RL L++ A LR
Sbjct: 154 AEAI-AEALENHGV---------THISLVPTQLQRL----------LESLGARWLSSLRA 193
Query: 308 MMCGSSALPLPVMQQ-----WETITGHRLLERYGMTEGC 341
++ G + +P +++Q YGMTE
Sbjct: 194 VLLGGAPIPPSLLEQARQRGIPLYPT------YGMTETA 226
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 2e-21
Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
L G R+ I+ + V G GT +G I V Y E EL + +HDS ++L
Sbjct: 69 LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCL 128
Query: 123 EDYREVLQNVASKSGAKFSLIP------PVPN-----------------VSSETTVFDQS 159
+ + NV S + + ++ P P VS T+ +
Sbjct: 129 DLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWN 188
Query: 160 QAEK-------MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
EK + D AL+ YT GTTG PKGV+ THK++ + M + W Y +
Sbjct: 189 SVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-WLYNCKE 247
Query: 213 Q---FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
L LP HV+G+ + + G + +PKF ++ +++ ++
Sbjct: 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKK----------HK 297
Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329
+T F G PT+Y L+ + ++ + +R + GS+ LP+ V +++ET+TG
Sbjct: 298 VTLFPGAPTIYIALLNSPLLKEYDISS--------IRACISGSAPLPVEVQEKFETVTGG 349
Query: 330 RLLERYGMTE 339
+L+E YG+TE
Sbjct: 350 KLVEGYGLTE 359
|
Length = 563 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 88/347 (25%), Positives = 138/347 (39%), Gaps = 69/347 (19%)
Query: 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
Y++ Q+A A RI++ L S L+ G RI I++K E++
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEP-----------------GDRIAILSKNCAEWIIA 47
Query: 85 VLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVL--STEDYREVLQNVASKSGAK 139
L W +G ++VPL YP + +V+ SD + +D+ + V
Sbjct: 48 DLAIWMAGHVSVPL---YPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPE----- 99
Query: 140 FSLIPPVPNVSSETTVFDQSQA-----EKMDG---QRGEDPALIVYTSGTTGKPKGVVHT 191
L + S + E + G ED A IVYTSGTTG+PKGV+ +
Sbjct: 100 -GLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLS 158
Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
+ Q E T D+ L LPL H+ LY+GA V F V +
Sbjct: 159 FGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFF-----VESL 213
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY------EAMDTELQAASASAA--- 302
+++ + RA T F VP ++T+ QG E ++ L+ S+
Sbjct: 214 -----DTFAADLQRA--RPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKK 266
Query: 303 --------KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
Q RL G++ +P ++ + + G + E YGMTE
Sbjct: 267 KILKGLGLDQARLAGSGAAPMPPALIAWYRKL-GLPICEGYGMTENF 312
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-21
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
+D A I+YTSG+TG+PKGV+ +H+++ A + + + E T D+ L LP +GL +
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-S 59
Query: 229 ALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
LL G T+ +F+ R + + + E IT F GVPT + +L++
Sbjct: 60 QLLTAFRVGGTLVLESRFAFPRDVLKHLAK----------ERITGFAGVPTTWAQLLR-- 107
Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE 339
+D + S LR + ALP + Q +L YG+TE
Sbjct: 108 --LDPLAREDFPS----LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE 154
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 69/302 (22%), Positives = 120/302 (39%), Gaps = 55/302 (18%)
Query: 63 LAGGCGAR-------IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD 115
LA G AR + +++ S EF L +G + Y +E+ + DS
Sbjct: 45 LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104
Query: 116 ISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--- 172
+ ++T + E L ++A PV V ++ + + + +P
Sbjct: 105 AKLAITTSELAEKLASLAL---------EPV--VLLDSADDGSAAIDDLLFADEPEPPVV 153
Query: 173 -------ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCLPLHHV 223
A + Y+SGTTG+ KGV+ TH+++ A V L + L LP+ H+
Sbjct: 154 VIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHI 213
Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRG---IWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
+GL LLA L GATV MP+F + ++++ +T VP +
Sbjct: 214 YGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYK-------------VTHLPVVPPIV 260
Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
L++ +L L+ + G++ L + + + G L + YGMTE
Sbjct: 261 LALVKHPIVDKYDL--------SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTE 312
Query: 340 GC 341
Sbjct: 313 SS 314
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 7e-21
Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 36/286 (12%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL------- 120
G R+ + + EFV +L + + VPL + P +E + +VL
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH 127
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
T + + NV SG + + ++E T S E + D A+I+
Sbjct: 128 DRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTP-ATSTPEGL----RPDDAMIM 182
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
+T GTTG PK V TH +I + V+ + + + D + +PL+H HGL ALLA L +
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLAS 242
Query: 237 GATVEFMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
G V +P +FS W + T +T VPT++ L+ E TE
Sbjct: 243 GGAV-LLPARGRFSAHTFWDDIKAV----------GATWYTAVPTIHQILL---ERAATE 288
Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
S LR + S+ L Q +T ++ +GMTE
Sbjct: 289 ---PSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTE 331
|
Length = 534 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 5e-20
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 41/186 (22%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D++A+ +S +Y +L A R++ L + + G + ++
Sbjct: 2 DAIALVYGDRSLTYAELNERANRLARRLRARGVGP-----------------GDVVALLL 44
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL------ 129
+ S E V +L +G VPL +YP L ++ DS ++L+ E +
Sbjct: 45 ERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLP 104
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+ + PP P V +D A ++YTSG+TG+PKGV
Sbjct: 105 LVILEEELDAEDAGPPAPAVD------------------ADDLAYVMYTSGSTGRPKGVA 146
Query: 190 HTHKSI 195
H+ +
Sbjct: 147 VPHRGV 152
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 66/314 (21%), Positives = 109/314 (34%), Gaps = 68/314 (21%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D+ A+ + +Y +LA A I++ L G + +V
Sbjct: 2 DATAVIDGAGTLTYGELARRANAIAAAL-------------RAAGV----APGDLVAVVM 44
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+E + VLG +G VP+ P ++ + VL+ +
Sbjct: 45 PKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQ-------- 96
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG----EDPALIVYTSGTTGKPKGVVHT 191
P D + AE +D A +++TSG+TG+PKGV+ T
Sbjct: 97 ---------PEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT 147
Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHH---VHGLFNALLAPLYAGATVEFMPKFSV 248
H++ + + + AD+ L LH V+ +F AL AGA + +
Sbjct: 148 HRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFGALS----AGAALVLPDEARR 203
Query: 249 RGI--WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA--SASAAKQ 304
R W + + V T + VP + MD L A +A
Sbjct: 204 RDPDHWAELVQRHGV---------TVWNSVPAL----------MDMLLTYAEDAARLLPS 244
Query: 305 LRLMMCGSSALPLP 318
LRL+M +PL
Sbjct: 245 LRLVMLSGDWIPLD 258
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 67/330 (20%), Positives = 110/330 (33%), Gaps = 96/330 (29%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D+VA+ S +Y +L A +++ L S L G + +
Sbjct: 7 DAVAVDFWDGSLTYAELDRRANKLAHHLIS-----------------LGVRPGDIVALCL 49
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S +L +G VP+ S P L ++ DS ++VL++
Sbjct: 50 ERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS------------- 96
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
+DPA ++YTSG+TGKPKGVV TH++I
Sbjct: 97 --------------------------------SPDDPAYVIYTSGSTGKPKGVVITHRNI 124
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVRGI 251
++ D+ L + F+ + L AG T+ P+
Sbjct: 125 CNFLRAEGAILGIRPGDRVLQFASIA-----FDVSILEIFTTLLAGGTLVIPPEELRLED 179
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
+ +N R +T P++ L LR ++ G
Sbjct: 180 LAEF-----LNRLR----VTVAHLTPSLLALL--------------DPEDVPSLRTLILG 216
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEGC 341
A P ++ +W RLL YG TE
Sbjct: 217 GEACPQALVDRW--SKPRRLLNTYGPTEAT 244
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-19
Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 50/284 (17%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
+GI + S E V G+L +G VPL YP L +++ DS I ++L+ +
Sbjct: 1625 VLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ---SHL 1681
Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTS 179
+ G + V DQ ++G +PA+ ++YTS
Sbjct: 1682 QARLPLPDGL-------------RSLVLDQEDDW-LEGYSDSNPAVNLAPQNLAYVIYTS 1727
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYA 236
G+TG+PKG + H ++ ++ EA++ ++AD L V LF PL
Sbjct: 1728 GSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF----WPLIN 1783
Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
GA + P G + + + + +T VP+M +L+Q
Sbjct: 1784 GARLVIAPP----GAHRDPEQLIQL---IERQQVTTLHFVPSMLQQLLQ---------MD 1827
Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
LR ++CG AL + ++ W E + L YG TE
Sbjct: 1828 EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871
|
Length = 3956 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
G + +DPA+I++TSG+ G PKGVV +H+++ A + + + + D L LPL H G
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFG 200
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTMY 280
L LL PL G V + P P++ + E I T G PT
Sbjct: 201 LTVTLLLPLLTGLRVVYYPN--------------PLDAKKIAELIRDYKATILCGTPTFL 246
Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+GY +S LRL++ G+ LP + +E G R+LE YG TE
Sbjct: 247 ----RGYARNAHPEDFSS------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATE 295
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 70/328 (21%), Positives = 114/328 (34%), Gaps = 68/328 (20%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+ + +Y +L ++ R+++ L + + G G R+ +V
Sbjct: 30 DRTAVVDGPRRLTYRELDAAVDRLAAGLLALGI-----------------GPGDRV-LVQ 71
Query: 76 KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
P EFV + G I V ++ E+ H A
Sbjct: 72 LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHF----------------------AR 109
Query: 135 KSGAKFSLIPPVPNVSSETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
+S AK +I + FD + A ++ + D AL + GTTG PK + TH
Sbjct: 110 QSEAKAYIIAD------RFSGFDYAALAREL-LEELPDVALFQLSGGTTGLPKLIPRTHN 162
Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGIW 252
+ EA +L LP H L + LL L AG TV S +
Sbjct: 163 DYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAF 222
Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
E +T VP + ++ E +L + LR++ G
Sbjct: 223 PLIER----------EKVTHTALVPALLNLWLEAAEWDQADLSS--------LRVIQVGG 264
Query: 313 SALPLPVMQQWETITGHRLLERYGMTEG 340
+ L + ++ E G L + +GM EG
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEG 292
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 2e-18
Identities = 79/329 (24%), Positives = 122/329 (37%), Gaps = 49/329 (14%)
Query: 14 ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
A +++A+ + SY +L S A R++ L + G R+ I
Sbjct: 2016 APEAIAVVFGDQHLSYAELDSRANRLAHRLRA-----------------RGVGPEVRVAI 2058
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
A+ SFE V +L +G VPL +YP L +++ DS +++L+ E L A
Sbjct: 2059 AAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA 2118
Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHT 191
V + + + + GE+ A ++YTSG+TG PKGV +
Sbjct: 2119 G-----------VARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167
Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
H ++ A Q E +E + AD L + G PL GA V +R
Sbjct: 2168 HGALVAHCQAAGERYELSPADCELQFMSF-SFDGAHEQWFHPLLNGARV------LIRDD 2220
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
E R G I F P +L + A +R+ G
Sbjct: 2221 ELWDPEQLYDEMERHGVTILDF--PPVYLQQLAE---------HAERDGRPPAVRVYCFG 2269
Query: 312 SSALPLPVM-QQWETITGHRLLERYGMTE 339
A+P + WE + L YG TE
Sbjct: 2270 GEAVPAASLRLAWEALRPVYLFNGYGPTE 2298
|
Length = 5163 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 8e-18
Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
Q+ ED ALI++TSG+ G PKGVVH+HKS+ A V+ + ++T D+F+ LPL H GL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGL 421
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
L PL GA V P P++ E + T G T
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467
Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
Y R Y+ +LR ++ G+ L Q W+ G R+LE YG+T
Sbjct: 468 NYARFANPYDFA-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514
Query: 339 E 339
E
Sbjct: 515 E 515
|
Length = 718 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 9e-18
Identities = 79/346 (22%), Positives = 136/346 (39%), Gaps = 67/346 (19%)
Query: 15 RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
D+ A+ ++ +Y L+ L ++S L L G R+ I
Sbjct: 14 PDATALVHHDRTLTYAALSERVLALASGLRGLGLAR-----------------GERVAIY 56
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
E V + G +G + VP+ ++ H++ D ++ +++++ + ++L
Sbjct: 57 LDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP 116
Query: 135 K-----------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYT 178
A S P +S + + A D D A I+YT
Sbjct: 117 GCHDLRTLIIVGDPAHASEGHPGEEPAS----WPKLLA-LGDADPPHPVIDSDMAAILYT 171
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
SG+TG+PKGVV +H+++ A Q + E D+ L LPL +G FN L Y GA
Sbjct: 172 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGA 230
Query: 239 TV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
TV +P+ ++ + + IT VP ++ +L Q +D
Sbjct: 231 TVVLHDYLLPRDVLKALEK--------------HGITGLAAVPPLWAQLAQ----LDWPE 272
Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE 339
SAA LR + A+P + + + + RL YG+TE
Sbjct: 273 -----SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE 313
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 82/363 (22%), Positives = 132/363 (36%), Gaps = 109/363 (30%)
Query: 27 YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
SY ++ AL I S L + LK G +IGI A+ E++
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKP-----------------GDKIGIFAENRPEWIITEQ 48
Query: 87 GTWFSGCIAVPLALSYPESELLHVMHDSDISMV----LSTEDYREVLQNVASKSG--AKF 140
+ + VPL + E + +++++++IS+V + + E+ + G K
Sbjct: 49 ACFSQSLVIVPLYDTLGEEAIEYILNETEISIVFCDAVKVYSFEELE-----ELGKKNKV 103
Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
PP P ED A I+YTSGTTG PKGV+ TH +I A V
Sbjct: 104 PPTPPKP----------------------EDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141
Query: 201 MLTEAWEYTSADQFLHC--LPLHHVHGLFNALLAPLYAGATVEFMPKFS--VRGIWQRWR 256
+ + ++ LPL H+ + LY G + + +S RG+ +
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVC-LYIGGRIGY---YSGDTRGLKGDIK 197
Query: 257 ESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---------ASAAKQ--- 304
E P T F GVP + R+ Y+ + ++ A A K
Sbjct: 198 ELKP----------TVFVGVPRVLDRI---YKGILAKVNAKGGLKRTLFNFAYNYKLAAL 244
Query: 305 --------------------------LRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
+RLM+ G + L + G +L+ YG+T
Sbjct: 245 RRGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLT 304
Query: 339 EGC 341
E C
Sbjct: 305 ETC 307
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 61/306 (19%)
Query: 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLA--------LSYPESELLHVMHDS 114
L G R+ +A + L +F AVP ++ ++++ +
Sbjct: 45 LGVKPGDRVATLAWNTHRH----LELYF----AVPGMGAVLHTLNPRLSPEQIAYIINHA 96
Query: 115 DISMVLSTEDYREVLQNVASK----------SGAKFSLIPPVPNVSSETTVFDQSQAEKM 164
+ ++ +D+ +L+ +A + A + E + ++S +
Sbjct: 97 EDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW 156
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHH 222
A + YTSGTTG PKGVV++H+S+ L ++ + +D L +P+ H
Sbjct: 157 PELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFH 216
Query: 223 VH--GLFNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
V+ GL A A + GA + P + I E +T G
Sbjct: 217 VNAWGLPYA--ATM-VGAKLVLPGRYLDPASLLDLI--------------EEEKVTVSAG 259
Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
VPT++ L+ EA +L + LR ++ G SALP ++++ E G ++ +
Sbjct: 260 VPTIWLGLLNYLEANGKDLSS--------LRRVVVGGSALPRSLIEKLEER-GVEVIHAW 310
Query: 336 GMTEGC 341
GMTE
Sbjct: 311 GMTETS 316
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 85/348 (24%), Positives = 132/348 (37%), Gaps = 68/348 (19%)
Query: 13 MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--AR 70
M D+VA+ D++ +Y +L A R++ L +A G G
Sbjct: 4563 MTPDAVAVVFDEEKLTYAELNRRANRLAHAL-------------------IARGVGPEVL 4603
Query: 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
+GI + S E + G+L +G VPL YP L ++M DS +++L+ +LQ
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLT---QSHLLQ 4660
Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTSGT 181
+ G SL + E +G DPA+ ++YTSG+
Sbjct: 4661 RLPIPDGLA-SL--------------ALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
TG+PKGV +H S+ + E +E T D+ L + G L PL GA+V
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSF-SFDGSHEGLYHPLINGASVV 4764
Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
+W R ++ +R +T P +L + E D E +
Sbjct: 4765 IRDD----SLWDPERLYAEIHEHR----VTVLVFPPVYLQQLAEHAER-DGEPPS----- 4810
Query: 302 AKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEGCTKGRHCW 348
LR+ G A+ W + L YG TE T W
Sbjct: 4811 ---LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTE-TTVTVLLW 4854
|
Length = 5163 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 81/332 (24%), Positives = 124/332 (37%), Gaps = 47/332 (14%)
Query: 15 RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
D A+ +Y QLA R + L G G + ++
Sbjct: 26 PDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALL 68
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
+ E + + +G L + +V+ D+ IS ++ E +L
Sbjct: 69 SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
V S +L PVP+ + A + D A + YT GTTGKPKGV
Sbjct: 129 ARVPSLK-HVLTL-GPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGV 186
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
+ TH+SI Q+ WE+ + +FL C PL H G F L L G TV + KF
Sbjct: 187 MGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDP 244
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
+ + E + ITA VPTM L+ + +L + L +
Sbjct: 245 AEVLRAIEE----------QRITATFLVPTMIYALLDHPDLRTRDLSS--------LETV 286
Query: 309 MCGSSAL-PLPVMQQWETITGHRLLERYGMTE 339
G+S + P+ + + E G + YG TE
Sbjct: 287 YYGASPMSPVRLAEAIERF-GPIFAQYYGQTE 317
|
Length = 524 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 108/336 (32%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D++A+R D ++ SY +L + ++++ L + L G G R+G++
Sbjct: 2 DAIALRDDDRTLSYAELDERSNQLAARLRA-----------------LGVGPGDRVGVLL 44
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S + VA +L +G VPL SYP L +++ D++ +++L+
Sbjct: 45 ERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT-------------- 90
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
+D A ++YTSG+TGKPKGV +H+++
Sbjct: 91 --------------------------------DPDDLAYVIYTSGSTGKPKGVEVSHRAL 118
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA------------LLAPLYAGATVEFM 243
+ + ++D+ L A LL PL +GATV
Sbjct: 119 VNFLLSMARRPGLGASDRLL-------------AVTTISFDISVLELLLPLLSGATVVIA 165
Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
+VR + R I T ++Q A L AA +
Sbjct: 166 SAETVR------------DPERLARLIAD--ERIT----IMQATPATWRMLLAAGWRGRE 207
Query: 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
L +CG ALP + ++ + TG L YG TE
Sbjct: 208 SLTA-LCGGEALPRDLAERLLS-TGAELWNMYGPTE 241
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 42/171 (24%)
Query: 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF 140
F A +LG G I VPL+ +T++++ L V + F
Sbjct: 57 FWACILG----GIIPVPLS-------------------YGNTDEHKLKLLRVWNILNNPF 93
Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
LI D+ + +D A I ++SG+TG+PKGV+ THK++ ++
Sbjct: 94 -LI------------TDRDSLLSLP----DDIAFIQFSSGSTGEPKGVILTHKNLLTNIE 136
Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVR 249
+ EA E TS D FL +PL H GL L P G MP F R
Sbjct: 137 AIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR 187
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 70/234 (29%)
Query: 15 RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
D A+ + +Y +L A R+++ L L G G + +
Sbjct: 5 PDRPALVVGGDTLTYAELKERADRLAARL-----------------LALGGRAGDPVAVY 47
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
S + A +L +G VPL S P + ++ + + +++ D
Sbjct: 48 GHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD---------- 97
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
D A I++TSG+TGKPKGV +H +
Sbjct: 98 ------------------------------------DLAYILFTSGSTGKPKGVQISHAN 121
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPK 245
+ + + + E ++ T D F + P V LF AL +GAT+ +PK
Sbjct: 122 LASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPALA----SGATLYVIPK 171
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 82/349 (23%), Positives = 126/349 (36%), Gaps = 75/349 (21%)
Query: 13 MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
D + ++Y + A +A + L + +K + + A++ CG RI
Sbjct: 33 RYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVK------RGDRVALM---CGNRI- 82
Query: 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132
EF+ LG + G IAVP+ + +L H++ +S +++ L+
Sbjct: 83 -------EFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAA 135
Query: 133 -----------------ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALI 175
+ A +S P P + + D A I
Sbjct: 136 DPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA----------AVQPGDTAAI 185
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGLFNALL 231
+YTSGTTG KGV H AQ + E E + D LPL H + L NA
Sbjct: 186 LYTSGTTGPSKGVCCPH----AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL-NAFF 240
Query: 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
L AGAT P+FS G W R R G +T G AM
Sbjct: 241 QALLAGATYVLEPRFSASGFWPAVR--------RHGATVTYLLG-------------AMV 279
Query: 292 TELQAASASAA-KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+ L + A + + R+ + +P + + G LL+ YG TE
Sbjct: 280 SILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTE 328
|
Length = 542 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 86/338 (25%), Positives = 134/338 (39%), Gaps = 69/338 (20%)
Query: 23 DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
+ YSY +L R ++L S ++ K + A+ C P F F
Sbjct: 34 VVRRYSYLELNEEINRTANLFYSLGIR------KGDKVALHLDNC---------PEFIFC 78
Query: 83 AGVLGTWFS----GCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA 138
WF G I VP+ E ++ +S S+++++ + + + + +
Sbjct: 79 ------WFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT 132
Query: 139 KFSLI-------PPVPNVSSETTVFDQSQAEKMDGQR---GEDPALIVYTSGTTGKPKGV 188
I P VSS T + Q Q + +D A I++TSGTT +PKGV
Sbjct: 133 PLRHICLTRVALPADDGVSSFTQLKAQ-QPATLCYAPPLSTDDTAEILFTSGTTSRPKGV 191
Query: 189 VHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
V TH ++ + AW+ D +L +P H+ A +A AGAT + K+
Sbjct: 192 VITHYNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ-L 305
S R W + + Y RA T +P M L+ +Q SA+ + L
Sbjct: 250 SARAFWGQVCK-Y-----RA----TITECIPMMIRTLM---------VQPPSANDRQHCL 290
Query: 306 RLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTE 339
R +M L + Q +E G RLL YGMTE
Sbjct: 291 REVM-----FYLNLSDQEKDAFEERFGVRLLTSYGMTE 323
|
Length = 517 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 71/300 (23%), Positives = 113/300 (37%), Gaps = 65/300 (21%)
Query: 15 RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
R+++ +R Y++ QLA + R++ L L G R+GI
Sbjct: 34 REALVVRHQALRYTWRQLADAVDRLARGL-----------------LALGVQPGDRVGIW 76
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
A E++ T G I V + +Y SEL + + S + V+ T DY +L
Sbjct: 77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAML 136
Query: 130 QNVAS--KSGAKFSLIPP-----------VPNVSSETTVFD--QSQAEKMDGQR------ 168
Q + G +L P + Q++ E + +
Sbjct: 137 QELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQA 196
Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
+DP I YTSGTTG PKG +H +I + E+ T D+ +PL+H G
Sbjct: 197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG 256
Query: 226 LFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
+ A L + GA + F P +++ + E TA GVPTM+
Sbjct: 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAV--------------EEERCTALYGVPTMF 302
|
Length = 558 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+D LI +TSGTTG+PKGV +H ++ Q Y D +LH PL H+ GL +A
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
LA L GA +PKF + Q ++ +T+ VP M LI
Sbjct: 232 -LAMLMVGACHVLLPKFDAKAALQAIKQ----------HNVTSMITVPAMMADLI----- 275
Query: 290 MDTELQAASASAA--KQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEGCT 342
L S + +R ++ G +L ++ + +L YGMTE C+
Sbjct: 276 ---SLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACS 328
|
Length = 563 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 3e-16
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 44/258 (17%)
Query: 96 VPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETT 154
+P+AL + E LL D +V +++ K G + IP P V+
Sbjct: 131 LPMALKFLEKGLL------DRLIVCEDDNW--------GKVGTPQAPIPADPRIVTYADF 176
Query: 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EY 208
V + + +D AL+ YT GTTG PKG + TH ++ + V + + W
Sbjct: 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR 235
Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE 268
++ + LPL H++ L LL L G + +F V +++ E RA
Sbjct: 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEE------KRA-- 287
Query: 269 AITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV--MQQWETI 326
T F GVPTM+ L A D L+ S+ L GS PLPV +E
Sbjct: 288 --TVFPGVPTMWIAL-----ANDPSLEKRDLSS-----LATIGSGGAPLPVEVANFFERK 335
Query: 327 TGHRLLERYGMTEGCTKG 344
TG +L +GMTE C+ G
Sbjct: 336 TGLKLKSGWGMTETCSPG 353
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 74/332 (22%), Positives = 136/332 (40%), Gaps = 63/332 (18%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D AI ++K ++ +L + + ++ L + +K G R+ ++
Sbjct: 17 DRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVK-----------------KGDRVALLM 59
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
K E + + G +AV L ELL + D+++ +++ +D+ A
Sbjct: 60 KNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF------EAKL 113
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK-- 193
+ N E + E+ D ++ A I+YTSGTTGKPKGV+ T+
Sbjct: 114 IPGISVKFAELMNGPKE----EAEIQEEFDL---DEVATIMYTSGTTGKPKGVIQTYGNH 166
Query: 194 ---SIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
++ + + + LTE D +L +P+ H+ GL + L+ + G V + KF
Sbjct: 167 WWSAVGSALNLGLTE------DDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAE 219
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
I + + +T + V TM RL++ L + + R M+
Sbjct: 220 KINKLLQTG----------GVTIISVVSTMLQRLLE-------RLGEGTYPS--SFRCML 260
Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
G P P+++Q + G + + YGMTE
Sbjct: 261 LGGGPAPKPLLEQCKE-KGIPVYQSYGMTETA 291
|
Length = 483 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 6e-16
Identities = 69/284 (24%), Positives = 112/284 (39%), Gaps = 45/284 (15%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G +GI + S E V G+L +G VPL YP+ L +++ DS + ++L+
Sbjct: 560 GPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL 619
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP---------ALIV 176
L PVP + D+ + G G +P A ++
Sbjct: 620 LAQL---------------PVP-AGLRSLCLDEPADL-LCGYSGHNPEVALDPDNLAYVI 662
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
YTSG+TG+PKGV +H ++ V ++ E + + D L L L +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTF-AFDLGVTELFGALAS 721
Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
GAT+ +P R A + +T VP+ L LQA
Sbjct: 722 GATLHLLPPDCARDAEAFAALM-------ADQGVTVLKIVPSHLQAL----------LQA 764
Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
+ + + R ++CG AL + ++ + G RL+ YG TE
Sbjct: 765 SRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTE 808
|
Length = 3956 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 7e-16
Identities = 61/209 (29%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 49 KTTSEKTKNENSAVLAG-------GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
TT+ + ++ A LAG G G R+ I+ EFV VL G IAVP+
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV--SSETTVFDQS 159
E+ ++ D +V+ TE L VA+ L+ V SS+ +V
Sbjct: 101 LTPPEIAFLVSDCGAHVVV-TEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYE 156
Query: 160 QAEKMDGQR------GED-PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
G D PALI+YTSGTTG+PKG V TH ++ Q
Sbjct: 157 DLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINS 216
Query: 213 QFLHC-LPLHHVHGLFNALLAPLYAGATV 240
+PL H+ G+ + L L TV
Sbjct: 217 DVGFVGVPLFHIAGIGSMLPGLLLGAPTV 245
|
Length = 542 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 34/287 (11%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G +G+ + S E V +L +G VPL YP L +++ DS + ++LS
Sbjct: 559 GPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQ--- 615
Query: 126 REVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQR--GEDPALIVYTSGTT 182
S G K L V + + + +E+ G E+ A ++YTSG+T
Sbjct: 616 --------SHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGST 667
Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
GKPKG + H+++ ++ + +A+ D L P ++ PL +GA +
Sbjct: 668 GKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVV 726
Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
R + E + VP+M +Q + LQ ++
Sbjct: 727 AAPGDHRDPAKLVELI-------NREGVDTLHFVPSM----LQAF------LQDEDVASC 769
Query: 303 KQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEGCTKGRHCW 348
LR ++C ALP +Q + + L YG TE W
Sbjct: 770 TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEA-AIDVTHW 815
|
Length = 5163 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 78/345 (22%), Positives = 129/345 (37%), Gaps = 58/345 (16%)
Query: 14 ARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
D +A+ + SY+Y L +A R+++ L + ++ G R+
Sbjct: 36 MPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEP-----------------GDRVA 78
Query: 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---- 128
EF L G ++VPL S+ E+EL+ V++ M + +++
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVD 138
Query: 129 ----LQN-VASKSGAKF--SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
LQN + L P ++S + D G++ A +++TSGT
Sbjct: 139 LILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGT 198
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV- 240
G PKGV+ TH +I A + T D F+ PL H G + + AP GA
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258
Query: 241 ---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
F P + + + + T G L+ E +L A
Sbjct: 259 LLDIFTPDACLALL------------EQ--QRCTCMLGATPFIYDLLNLLEKQPADLSA- 303
Query: 298 SASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEGC 341
LR +CG + +P V ++ + G +LL YG TE
Sbjct: 304 -------LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESS 339
|
Length = 547 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 64/301 (21%), Positives = 117/301 (38%), Gaps = 38/301 (12%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
M + K K S+ + +AI+ + + +Y S ++++ L +++KN+
Sbjct: 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWL-------NEKESKNK-- 51
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
I I+ + EF+ G +G VPL + + + EL + S+ M++
Sbjct: 52 ---------TIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV 102
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
TE Y+ L ++ + G + + + A + Q P + +TSG
Sbjct: 103 -TERYK--LNDLPDEEGRVIEIDEWKRMIEKYLPTY----APIENVQ--NAPFYMGFTSG 153
Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
+TGKPK + +S + D L L H L+ A+ LY G TV
Sbjct: 154 STGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST-LYVGQTV 212
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
M KF + + E I+ VPTM L + ++ +++ S+
Sbjct: 213 HLMRKFIPNQVLDKLE----------TENISVMYTVPTMLESLYKENRVIENKMKIISSG 262
Query: 301 A 301
A
Sbjct: 263 A 263
|
Length = 487 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+D A I+++SG+ G+PKGV+ +H +I + ++ +++ + + D L LP H GL
Sbjct: 782 DDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVT 841
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPT---MYT 281
L PL G V + P P + + + T G PT +Y
Sbjct: 842 LWLPLLEGIKVVYHPD--------------PTDALGIAKLVAKHRATILLGTPTFLRLYL 887
Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
R + L AS LRL++ G+ L V +E G R+LE YG TE
Sbjct: 888 RNKKL-----HPLMFAS------LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATE 934
|
Length = 1146 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 72/340 (21%), Positives = 119/340 (35%), Gaps = 56/340 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+ + +S SY +L + A R + + + G G + ++
Sbjct: 52 DRPALLFEDQSISYAELNARANRYAHWAAARGV-----------------GKGDVVALLM 94
Query: 76 KPSFEFVAGVLGTWFSGCIAV---------PLALSYPESELLHVMHDSDISMVL-STEDY 125
+ E++A LG G + LA S + H++ ++
Sbjct: 95 ENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD 154
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
+ G ++++ + G +D A +YTSGTTG P
Sbjct: 155 LARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLP 214
Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
K V +H + T D CLPL+H G A + L AGAT+ K
Sbjct: 215 KAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274
Query: 246 FSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS-A 301
FS W +R+R TAF + + L+ Q +
Sbjct: 275 FSASRFWDDVRRYR-------------ATAFQYIGELCRYLLN---------QPPKPTDR 312
Query: 302 AKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEG 340
+LRL M G+ P + +++ G R+LE Y +EG
Sbjct: 313 DHRLRL-MIGNGLRP-DIWDEFQQRFGIPRILEFYAASEG 350
|
Length = 600 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 33/269 (12%)
Query: 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
+G+ + S E V G+L +G VPL YPE L +++ DS ++LS R
Sbjct: 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR---- 3165
Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
L V + + + ++A E+ A ++YTSG+TGKPKGV
Sbjct: 3166 ---------LPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGI 3216
Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
H ++ + + +A+ D+ L L PL +GA V V
Sbjct: 3217 RHSALSNHLCWMQQAYGLGVGDRVLQFTTF-SFDVFVEELFWPLMSGARV-------VLA 3268
Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
+ WR+ + E + P+M L+ A L+ ++C
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAF----------LEEEDAHRCTSLKRIVC 3318
Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTE 339
G ALP + QQ G L YG TE
Sbjct: 3319 GGEALPADLQQQV--FAGLPLYNLYGPTE 3345
|
Length = 5163 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 54/338 (15%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+ + Y+Y + R++S L + L G G + ++A
Sbjct: 19 DRTAVVYGDRRYTYRETYDRCRRLASAL-----------------SKLGIGKGDVVAVLA 61
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ + G +G + VPL ++ +++ S+ ++ +++ + + +
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE------------DPALIVYTSGTTG 183
K + + +S ++ E + G+ DP + YTSGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLL-AGGDPDPLPIPPDDEWDPISLNYTSGTTG 180
Query: 184 KPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
PKGVV+TH+ A + L W +L LP+ H +G + A G T
Sbjct: 181 NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNG-WCFPWAITAVGGTHV 237
Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
+ K I+ + +T G PT+ L E A
Sbjct: 238 CLRKVDAPAIYDLIEK----------HKVTHLCGAPTVLNMLANAPE-------ADKLPL 280
Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+ +R+M G+ P P + + G + YG+TE
Sbjct: 281 PRPVRVMTAGAP--PPPAVIKKMEELGFEVTHVYGLTE 316
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 11/199 (5%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G + ++ EFV LG G + Y +E+ S ++++ Y +
Sbjct: 75 GDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVD 134
Query: 128 VLQNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
L+ +A G I P SE T D+++ +++ +D + Y+SGTTG
Sbjct: 135 KLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS-PDDVVALPYSSGTTGL 193
Query: 185 PKGVVHTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
PKGV+ THK S+ QV + S D L LP+ H++ L + LL L GA +
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253
Query: 241 EFMPKF---SVRGIWQRWR 256
MPKF ++ + QR +
Sbjct: 254 LIMPKFEIGALLELIQRHK 272
|
Length = 537 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 31/187 (16%)
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EA--WEYTSADQ-FLHCLPLHH 222
+ +D A I+Y+SGTTG KGVV TH+++ A V++ EA +EY +D +L LP+ H
Sbjct: 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFH 255
Query: 223 VHGLFNALLAPLYAGATVEFMPKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
++GL ++ L G+T+ M +F V+ I R++ +T F VP
Sbjct: 256 IYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI-DRFK-------------VTHFPVVPP 301
Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
+ L + + + K L+ + CG++ L +Q + +T+ ++ YGM
Sbjct: 302 ILMALTK-------KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354
Query: 338 TEGCTKG 344
TE G
Sbjct: 355 TESTAVG 361
|
Length = 560 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 60/303 (19%), Positives = 98/303 (32%), Gaps = 80/303 (26%)
Query: 47 DLKTTSEKTKNENSAVLAGGC---GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP 103
+LK S++ N L G R+ ++ E A +LG G + +P
Sbjct: 5 ELKEESDRAAN----FLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK 163
++ + + + ++++ D
Sbjct: 61 PKDIRYRLERAGARAIVTSAD--------------------------------------- 81
Query: 164 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV 223
DPAL+ +TSGTTG PK V+HTH + + D
Sbjct: 82 -------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWA 134
Query: 224 HGLFNALLAPLYAGATVEF--MPKFSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPT 278
G +++L AP GA V +F + +R+ +T F PT
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYG-------------VTTFCAPPT 181
Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
Y L+Q Q S+ LR ++ L V+ W TG + + YG T
Sbjct: 182 AYRMLLQ---------QDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQT 232
Query: 339 EGC 341
E
Sbjct: 233 ETG 235
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+D ++YTSGTTG+PKGV+HT ++ A + E + D L P+ H G
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYG 256
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
L+ P+ GAT ++ IW R + + E +T FT T +
Sbjct: 257 LMMPVMLGATA------VLQDIWDPARAAELI----RTEGVT-FTMASTPF--------L 297
Query: 290 MD-TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
D T S LR +C + +P ++++ G +++ +GMTE
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTE 348
|
Length = 547 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
+ +DPA+I++TSG+ G PKGVV +H+++ A + +++ D+ + LP+ H
Sbjct: 786 YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
GL L+ PL +G V P P++ E I T ++
Sbjct: 846 SFGLTGGLVLPLLSGVKVFLYPS--------------PLHYRIIPELIYD-TNATILF-- 888
Query: 283 LIQGYEAMDTELQAASASAA----KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
DT L + A + LR + G+ + Q W G R+LE YG+T
Sbjct: 889 ------GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVT 942
Query: 339 E 339
E
Sbjct: 943 E 943
|
Length = 1140 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 71/321 (22%), Positives = 117/321 (36%), Gaps = 71/321 (22%)
Query: 61 AVLAG---GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
A+L G G R+ + +F G G + VP++ + E EL + ++D+
Sbjct: 73 ALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAE 132
Query: 118 MVLSTEDYREVLQNVASKSG-------AKFSLIP-----PVPNVSSETTVFDQSQAEKMD 165
++L+ + V++ V +++ + ++P P+P+ + + +
Sbjct: 133 VLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLP 192
Query: 166 GQRGE------------DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
R A + YT GTTG PKG HT + M+ A +
Sbjct: 193 ALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR------DMVYTAAAAYAVAV 246
Query: 214 -------FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRA 266
FL LP + G LL PL++GAT+ + RW
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLL---------ARW----------- 286
Query: 267 GEAITAFTGVP----TMYTRLIQGY-EAMDTELQAASASAAKQLRLMMCGSSALPL-PVM 320
+A+ V T L+ E MD + LR + S L P
Sbjct: 287 -DAVAFMAAVERYRVTRTVMLVDNAVELMDHP--RFAEYDLSSLRQVRVVSFVKKLNPDY 343
Query: 321 -QQWETITGHRLLE-RYGMTE 339
Q+W +TG L E +GMTE
Sbjct: 344 RQRWRALTGSVLAEAAWGMTE 364
|
Length = 567 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 22/191 (11%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYP-ES-------ELLHVMHDSDISMVLSTEDYREVLQN 131
++VA G ++G IAVP +YP ES LL ++ D++ ++L+ D R+ L
Sbjct: 76 DYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQ 132
Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVV 189
+ + A P + V + D + AE + +D A + YTSG+T PKGV
Sbjct: 133 MEELAAAN---APELLCVDT----LDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQ 185
Query: 190 HTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
+H ++ A Q++ + + D + LPL+H GL LL P+++G M
Sbjct: 186 VSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAY 245
Query: 248 VRGIWQRWRES 258
RW E+
Sbjct: 246 FLERPLRWLEA 256
|
Length = 4334 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 49/174 (28%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
DPA +YTSGTTG PK + +H+ A L D CLPL+H + L
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL---KPDDVLYLCLPLYHSNALT 138
Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
+ L AGA++ KFS W R A TAF V + R +
Sbjct: 139 VGWSSALAAGASLALRRKFSASQFWPDVRR------YGA----TAFQYVGEL-CRYLLNQ 187
Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEG 340
+ LR + G+ P + +++ G R++E YG TEG
Sbjct: 188 PEKPDDRDH-------PLR-KIIGNGLRP-DIWDEFKERFGVPRIVEFYGSTEG 232
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 57/207 (27%), Positives = 84/207 (40%), Gaps = 52/207 (25%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
ED A I YTSGTTG PKGVV TH ++ A V + + ++ +D + LPL H++ N
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ 280
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
++ L+ G V F + + P T F VP +Y R+ Y+
Sbjct: 281 IVM-LHYGVAVGFY-QGDNLKLMDDLAALRP----------TIFCSVPRLYNRI---YDG 325
Query: 290 MDTELQAAS---------ASAAKQ----------------------------LRLMMCGS 312
+ ++ + A AK+ +R M G+
Sbjct: 326 ITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGA 385
Query: 313 SALPLPVMQQWETITGHRLLERYGMTE 339
S L VM+ G R+LE YGMTE
Sbjct: 386 SPLSPDVMEFLRICFGGRVLEGYGMTE 412
|
Length = 651 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 88 TWFSGC-----IAVPLAL--SYPES--ELLHVMHDSDISMVLSTEDYREVLQNVASKSG- 137
T F C + VP+A+ +Y E + + + + +L + A +
Sbjct: 79 TAFWACVLGGFVPVPVAVPPTYDEPNAAVAKLRN------IWELLGSPVILTDAALVAAL 132
Query: 138 ---AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ + + V + + + R +DPAL++ TSG+TG PK VV TH++
Sbjct: 133 AGLRTRAGLEALR-VLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRN 191
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
I A+ + +T D L+ +PL HV G+ L +Y G
Sbjct: 192 ILARSAGTVQVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGC 235
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 55/269 (20%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D VA+ + +Y +L A R++ L + L G G +GI A
Sbjct: 18 DRVALVCGDRRLTYAELEERANRLAHYLIAQGL-----------------GPGDHVGIYA 60
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ E+V +LG + + + V + Y E EL +++ DSD ++ ++ + V +
Sbjct: 61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120
Query: 136 -------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
SG V E + S E+ G+R D ++YT GTT
Sbjct: 121 LPKLRTLVVVEDGSGND----LLPGAVDYEDALAAGS-PERDFGERSPDDLYLLYTGGTT 175
Query: 183 GKPKGVVHTHKSIDAQVQMLTEAW--------EYTSADQ--------FLHCLPLHHVHGL 226
G PKGV+ + I +V + + E A + PL H G
Sbjct: 176 GMPKGVMWRQEDI-FRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ 234
Query: 227 FNALLAPLYAGATVEFMP--KFSVRGIWQ 253
+ A A L++G TV +P +F +W+
Sbjct: 235 WAAFAA-LFSGQTVVLLPDVRFDADEVWR 262
|
Length = 533 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTSADQFLHCLPLHHVH 224
+D ALI +TSGTTG PKG +H H+ I A + +A+ + T D F+ PL
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRDILA----ICDAFPRHVLQPTPDDVFIGSPPLAFTF 202
Query: 225 GLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYT 281
GL +L PL GA+ + + + + Q R A FT PT
Sbjct: 203 GLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHR------------ATILFT-APT--- 246
Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
Y AM +++A S+ LR + LP V Q W TG ++++ G TE
Sbjct: 247 ----AYRAMLIKVKAFDISS---LRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATE 297
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH------VMHDSDISM 118
G G R I+A E++ LG +G IAVPL++ + H V+ D+ S+
Sbjct: 56 GSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGA---HDERVSAVLRDTSPSV 112
Query: 119 VLSTE-DYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
VL+T +V + VA + G PPV + + D + + A + Y
Sbjct: 113 VLTTSAVVDDVTEYVAPQPGQS---APPV--IEVDLLDLDSPRGSDARPRDLPSTAYLQY 167
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC-------------LPLHHVH 224
TSG+T P GV+ +H+++ A + L +D F LP +H
Sbjct: 168 TSGSTRTPAGVMVSHRNVIANFEQLM-------SDYFGDTGGVPPPDTTVVSWLPFYHDM 220
Query: 225 GLFNALLAPLYAGATVEFM 243
GL + AP+ G
Sbjct: 221 GLVLGVCAPILGGCPAVLT 239
|
Length = 578 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 51/234 (21%), Positives = 76/234 (32%), Gaps = 62/234 (26%)
Query: 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
K+++Y + LR + L +N S G + I S EFV
Sbjct: 4 KTWTYSETYDLVLRYAHWL---------HGDRNVQS-------GDFVAIDTTNSAEFVFL 47
Query: 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
L W G + + + L+H + S V+ D
Sbjct: 48 WLALWSIGAVPAFINYNLSGDPLIHCLKISGAKFVIVDPD-------------------- 87
Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
DPA ++YTSGTTG PKG + + L+
Sbjct: 88 --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121
Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES 258
D+ C+PL+H F L L +G T+ KFS W+ R+S
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDS 175
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 24/176 (13%)
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEA-WEYTSADQFLHCLPLHHVHG 225
E PA + YTSGTTG PKG V ++ +++V M T+A + + L +PL+HV G
Sbjct: 150 EPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIG 209
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRL 283
F L+A L ++ G + E P + + E +T+ PT L
Sbjct: 210 FFAVLVAAL------------ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDAL 257
Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
E +L L + + +P V+++ + YG TE
Sbjct: 258 AAAAEGAPLKL--------DSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTE 305
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
G R+ I+A + +++ G ++G IAVPL + P LH V+ D S +L+T
Sbjct: 79 GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTD 138
Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
E R+ + +K + + VP+ T V +A + + A + YTSG
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWV--PPEANE------DTIAYLQYTSG 190
Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
+T P GV TH ++ V + +A E D+ + LP H GL LL L G +
Sbjct: 191 STRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGHYI 249
Query: 241 EFM-PKFSVRGIWQRWRESYPVNGNRAGEAITA 272
FM P VR RW G +A
Sbjct: 250 TFMSPAAFVRRPG-RWIRELARKPGGTGGTFSA 281
|
Length = 631 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 40/184 (21%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH--------CLPL 220
ED A + YT GTTG KG + TH+++ A + Y LH LPL
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL--EQAKAAYGP---LLHPGKELVVTALPL 259
Query: 221 HHVHGL-FNALLAPLYAGATVEFM--PKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTG 275
+H+ L N LL + G + P R I +E YP TA TG
Sbjct: 260 YHIFALTVNCLLF-IELGGQNLLITNP----RDIPGFVKELKKYPF---------TAITG 305
Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
V T++ L+ E EL +S L+L + G A+ V ++W +TG LLE Y
Sbjct: 306 VNTLFNALLNNEEF--QELDFSS------LKLSVGGGMAVQQAVAERWVKLTGQYLLEGY 357
Query: 336 GMTE 339
G+TE
Sbjct: 358 GLTE 361
|
Length = 560 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+G+ + S E V G+L +G VPL YP L +++ DS I ++LS E L
Sbjct: 2240 RVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEAL 2299
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+ + A++ L +++ + + + + + A ++YTSG+TGKPKGVV
Sbjct: 2300 GELPA-GVARWCLEDDAAALAA----YSDAPLPFLSLPQHQ--AYLIYTSGSTGKPKGVV 2352
Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATV 240
+H I Q + E + + D LH ++ F+A LL PL GA V
Sbjct: 2353 VSHGEIAMHCQAVIERFGMRADDCELHFYSIN-----FDAASERLLVPLLCGARV 2402
|
Length = 4334 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-12
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
+ +DPA I++TSG+TG PKGVV+TH++ AQ+ L + D+ L P LF
Sbjct: 83 KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF 139
Query: 228 NALL 231
L
Sbjct: 140 GPAL 143
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+D ++YTSGTTG+PKGV+HT ++ + + E E D L P+ H G
Sbjct: 195 DDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP-TMYTRLIQGYE 288
L+ PL AT ++ IW N RA E I TGV TM
Sbjct: 255 LMMPLILNATA------VLQDIW---------NPARAAELIRE-TGVTFTM------AST 292
Query: 289 AMDTELQAA---SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
T+L A S + L +C + +P ++++ + G ++ +GMTE
Sbjct: 293 PFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE 346
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNA 229
+P I +TSGTTG PK H+H S+ +++ W + T +D + + +
Sbjct: 175 EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWS 234
Query: 230 LLAPLYAGATV--EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
L +P GA V +P+F + I Q YP IT F PT+Y L+Q
Sbjct: 235 LFSPWIQGACVFVHHLPRFDPKVILQTL-SKYP---------ITTFCSAPTVYRMLVQ-- 282
Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
Q ++ K LR + G L V++QW+ TG L E YG TE
Sbjct: 283 -------QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTE 327
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 80/232 (34%)
Query: 27 YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
Y++ QL ++ R+++ L ++ G R+G+ S E L
Sbjct: 7 YTFGQLKDASNRLANALRELGVER-----------------GDRVGVYLPQSPETAIAHL 49
Query: 87 GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
+ G ++VPL++ + + H + DS + VL T+
Sbjct: 50 AVYKLGAVSVPLSVLFGPDAVEHRLRDSG-ARVLVTD----------------------- 85
Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
+DPA+++YTSGTTG PKG +H H+ + + + +
Sbjct: 86 ---------------------GSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124
Query: 207 E---------YTSADQFLHCLPLHHVHGLFNALLAPLYAGATV--EFMPKFS 247
E +T AD + GL + LL LY G V M +F
Sbjct: 125 ELAPRPGDVFWTPAD-------WAWIGGLLDVLLPALYFGVPVVAYRMQRFD 169
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 67/330 (20%), Positives = 123/330 (37%), Gaps = 55/330 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D+ A+ + +SY ++ + +++LL +K VA
Sbjct: 473 DAPALADARYQFSYREMREQVVALANLLRERGVKP------------------GDSVAVA 514
Query: 76 KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
P S + +G +PL YP+ L ++ D+ S++++T D +V
Sbjct: 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD 574
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ ++ A + + A I++TSG+TG+PKGV+ +
Sbjct: 575 LTSLCYNAPLAPQ------------GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTA 622
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
I ++ + + T+ D L P V F P AGA + + R
Sbjct: 623 IVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF----WPFIAGAKLVMAEPEAHRD- 677
Query: 252 WQRWRESYPVNGNR--AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
P+ + A +T VP+M + ++ E + + LR +
Sbjct: 678 --------PLAMQQFFAEYGVTTTHFVPSMLAAFVA---SLTPE---GARQSCASLRQVF 723
Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTE 339
C ALP + ++W+ +TG L YG TE
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTE 753
|
Length = 1296 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
+D A I++TSG+TG PKGVV+TH +AQ++ L E + + L PL LF
Sbjct: 174 DDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPL---FALFGP 230
Query: 230 LL 231
L
Sbjct: 231 AL 232
|
Length = 552 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 42/224 (18%)
Query: 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
S SY QL ++ L + +K RI + S ++V
Sbjct: 1 DSLSYQQLWQEVDLLAEQLRALGVK--------------------RIALALDNSIDWVIA 40
Query: 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST--EDYREVLQNVASKSGAKFSL 142
L +G + +P+ + + H+++D+ +++S + + A+ +
Sbjct: 41 DLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASALHTPFATLGEDLYIA 100
Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
+ P N + A I YTSG+TG+PKGV + +++ Q L
Sbjct: 101 LRPSAN---PVELP-------------AGTAKITYTSGSTGQPKGVCLSAAALETVAQSL 144
Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNA--LLAPLYAGATVEFMP 244
EA ++ L LPL + L N + APL GATV +P
Sbjct: 145 AEAIAILEPERHLCLLPLATL--LENIAGVYAPLLMGATVILVP 186
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 60/275 (21%), Positives = 100/275 (36%), Gaps = 30/275 (10%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G +G+ + S E + +L +G VPL YP L +++ DS + ++L+
Sbjct: 3143 GPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL 3202
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
E L A + + + + GE+ A ++YTSG+TGKP
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM----------GENLAYVIYTSGSTGKP 3252
Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
KGV H ++ + + EA+E + D+ L + G L L G +
Sbjct: 3253 KGVGVRHGALANHLCWIAEAYELDANDRVLLFMSF-SFDGAQERFLWTLICGGCL----- 3306
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
VR E + +I F P + + A + L
Sbjct: 3307 -VVRDNDLWDPEELWQAIHAHRISIACF--PPAYLQQF----------AEDAGGADCASL 3353
Query: 306 RLMMCGSSALPLPVMQQWETITGHR-LLERYGMTE 339
+ + G A+P +Q + R L YG TE
Sbjct: 3354 DIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTE 3388
|
Length = 3956 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 25/196 (12%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--------SYPESELLHVMHDS-DISM 118
G R+ ++A+ +FV ++G + VPL L SY L M S +
Sbjct: 74 GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESY--IAQLRGMLASAQPAA 131
Query: 119 VLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIV 176
+++ ++ + + L F + R +D A +
Sbjct: 132 IITPDELLPWVNEATHGNPLLHVLSH---------AWFKALPEADVALPRPTPDDIAYLQ 182
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
Y+SG+T P+GV+ TH+++ A ++ ++ + + D+ + LP +H GL LL P+
Sbjct: 183 YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVA 242
Query: 236 AGATVEFMP--KFSVR 249
+V+++P F+ R
Sbjct: 243 TQLSVDYLPTRDFARR 258
|
Length = 579 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 80/346 (23%)
Query: 23 DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
+ +Y +L + + R++ L + L+ G + I+ + + EF
Sbjct: 8 SGEVVTYGELEARSNRLAHGLRALGLRE-----------------GDVVAILLENNPEFF 50
Query: 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
SG P+ +E+ +++ DS +++ + + +A++ A
Sbjct: 51 EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG--- 107
Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPA------LIVYTSGTTGKPKGVVH--THKS 194
P+ V + +S E + Q A ++Y+SGTTG+PKG+
Sbjct: 108 -VPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166
Query: 195 IDA---QVQMLTEAWEYTSADQ-FLHCLPLHHVHGLFNALLAPL-------YAGATVEFM 243
D + L Y D +L PL+H APL G TV M
Sbjct: 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHT--------APLRFGMSALALGGTVVVM 218
Query: 244 PKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
KF + I +R+R +T VPTM+ R+++ E + +S
Sbjct: 219 EKFDAEEALALI-ERYR-------------VTHSQLVPTMFVRMLKLPEEVRARYDVSS- 263
Query: 300 SAAKQLRLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTEGC 341
LR+ + ++ P+ V + W I + E Y +EG
Sbjct: 264 -----LRVAIHAAAPCPVEVKRAMIDWWGPI----IHEYYASSEGG 300
|
Length = 502 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 63/179 (35%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D++A+ +S +Y +L A R+++ L G +R+G+
Sbjct: 14 DAIAVVCGDESLTYAELNRRANRLAARL-----------------RAAGVGPESRVGVCL 56
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S + V +L +G VPL +YP L +++ D+ +VL+ D
Sbjct: 57 RRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPD----------- 105
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
D A ++YTSG+TG+PKGV H++
Sbjct: 106 -----------------------------------DLAYVIYTSGSTGRPKGVAIEHRN 129
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 40/184 (21%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA------DQFLHCLPLHHV 223
+D A + YT GTTG KG + TH+++ A +Q W + + + LPL+H+
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ-AHQWLAGTGKLEEGCEVVITALPLYHI 266
Query: 224 HGLF-NALLAPLYAG-----ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
L N L+ G + MP F V+ + ++ R TAFTGV
Sbjct: 267 FALTANGLVFMKIGGCNHLISNPRDMPGF-VKEL-KKTR-------------FTAFTGVN 311
Query: 278 TMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
T++ L+ G++ +D L++ + G A+ V ++W+ +TG L+E Y
Sbjct: 312 TLFNGLLNTPGFDQIDFS----------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAY 361
Query: 336 GMTE 339
G+TE
Sbjct: 362 GLTE 365
|
Length = 560 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 48/247 (19%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE---- 123
G R+GI A E+V T G I V + +Y SEL + ++ S +++ +
Sbjct: 68 GDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD 127
Query: 124 -DYREVLQNVA-----SKSGA------------------KFSLIPPVPNVSSETTVFDQS 159
DY +L +A + G K + + + D +
Sbjct: 128 SDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDA 187
Query: 160 Q-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL 218
+ A + +DP I YTSGTTG PKG TH++I + EA + T D+ +
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV 247
Query: 219 PLHHVHGLFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
PL+H G+ LA + GAT+ F P ++ + + E TA
Sbjct: 248 PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEE--------------ERCTAL 293
Query: 274 TGVPTMY 280
GVPTM+
Sbjct: 294 YGVPTMF 300
|
Length = 559 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PKGV+++H+S + A + +A ++AD L +PL H + A AP
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243
Query: 235 YAGATVEFMPKFSVRG--IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
V MP + G +++ E +T GVPT++ L+Q E
Sbjct: 244 MGTKLV--MPGAKLDGASVYELL----------DTEKVTFTAGVPTVWLMLLQYMEKEGL 291
Query: 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+L L++++CG SA+P +++ +E + G + +GMTE
Sbjct: 292 KL--------PHLKMVVCGGSAMPRSMIKAFEDM-GVEVRHAWGMTE 329
|
Length = 542 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 72/316 (22%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAV---PLALSYPESELLHVMHDS---------- 114
G RI + ++ V G +G I V PL Y E+ H +DS
Sbjct: 75 GDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPL---YTAREMEHQFNDSGAKALVCLAN 131
Query: 115 ------------DISMVLSTE------DYREVLQNVASKSGAKFSLIPP--VPNVSSETT 154
+ V+ TE + +L N K K ++P +P
Sbjct: 132 MAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKK--MVPAYHLPQAVKFND 189
Query: 155 VFDQSQAEKMD--GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWEYT 209
+ + + + +D A++ YT GTTG KG + TH+++ A Q + L +
Sbjct: 190 ALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE 249
Query: 210 SADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNG 263
+ + LPL+H++ F+ + L + +P V+ + +W+
Sbjct: 250 GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAM-VKEL-GKWK------- 300
Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
+ F G+ T++ L + + SA L+L + G AL L ++W
Sbjct: 301 ------FSGFVGLNTLFVALCN-----NEAFRKLDFSA---LKLTLSGGMALQLATAERW 346
Query: 324 ETITGHRLLERYGMTE 339
+ +TG + E YGMTE
Sbjct: 347 KEVTGCAICEGYGMTE 362
|
Length = 562 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 56/305 (18%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G + I A+ S + + G+L +G VPL YP L +++ DS + ++L+
Sbjct: 1179 GPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLT---- 1234
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTS 179
+P VS D + Q G++ A ++YTS
Sbjct: 1235 ----------QSHLLERLPQAEGVS--AIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTS 1282
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
G+TG+PKGV +TH ++ ++Q + + +D + P+ ++ PL G
Sbjct: 1283 GSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW-PLITGC- 1340
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAA 297
+ + G + R+ R E + + GV T++ L+Q + +
Sbjct: 1341 -----RLVLAGPGEH-RDPQ-----RIAELVQQY-GVTTLHFVPPLLQLF------IDEP 1382
Query: 298 SASAAKQLRLMMCGSSALPLP----VMQQWETITGHRLLERYGMTEGCTKGRHCWQSTSW 353
A+A LR + G ALP V+Q+ + H RYG TE H WQ
Sbjct: 1383 LAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLH---NRYGPTETAINVTH-WQ---- 1434
Query: 354 CSGQD 358
C +D
Sbjct: 1435 CQAED 1439
|
Length = 4334 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 19/23 (82%), Positives = 22/23 (95%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTH 192
+DPA+I+YTSGTTGKPKG VHTH
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTH 122
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 28/197 (14%)
Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEY 208
+TV+D + ++ A I Y++GTTG PKGVV++H+S+ Q L T++
Sbjct: 168 GRSTVYDWPELDE------TTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV 221
Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAG 267
T + FL C+P++HV + LA +G + F P S + + + P +
Sbjct: 222 THGESFLCCVPIYHVLS-WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--- 277
Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT 327
GVPT++ +L+ Y E + L+ + G SA+P +++ WE
Sbjct: 278 -------GVPTLWIQLMVHYLKNPPERMS--------LQEIYVGGSAVPPILIKAWEERY 322
Query: 328 GHRLLERYGMTEGCTKG 344
G ++ +GMTE G
Sbjct: 323 GVDVVHVWGMTETSPVG 339
|
Length = 576 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A + +Y QL + +++ + S L + S ++ G
Sbjct: 17 DFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKL--------PDKSPIIVFG--------- 59
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S E +A LG +G +P+ +S P + ++ + S++++TE+ + +
Sbjct: 60 HMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVI 119
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ + + ++ + +D A K G+D I++TSGTTGKPKGV +H +
Sbjct: 120 TLDE------LKDIFATGNPYDFDHAVK-----GDDNYYIIFTSGTTGKPKGVQISHDN 167
|
Length = 503 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEAWEYTSADQFLHCLPLHHVHG---L 226
A ++TSG+TG PK V++T + + A + M L L +P +H G
Sbjct: 223 AKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN 282
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIW----QRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
FN L L+ G T+ + G++ + RE P T + VP Y
Sbjct: 283 FNGL---LWGGGTLYIDDGKPLPGMFEETIRNLREISP----------TVYGNVPAGYAM 329
Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE----TITGHR--LLERYG 336
L EAM+ + A S K LRLM G + L + ++ + TGHR YG
Sbjct: 330 LA---EAMEKD-DALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG 385
Query: 337 MTE 339
TE
Sbjct: 386 ATE 388
|
Length = 624 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQ 213
FD++QA + YTSGTTG PKG +++H+S + A L +A ++ D
Sbjct: 173 FDENQASSL-----------CYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDA 221
Query: 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
L +P+ HV+ APL V P + +++ E +T
Sbjct: 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELI----------EAERVTFS 271
Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
GVPT++ L+ ++ A + LR + G SA P +++ +E G ++
Sbjct: 272 AGVPTVWLGLLN-------HMREAGLRFST-LRRTVIGGSACPPAMIRTFEDEYGVEVIH 323
Query: 334 RYGMTE 339
+GMTE
Sbjct: 324 AWGMTE 329
|
Length = 539 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
G AL +YTSGTTG PK +H + Q + T+ D LPL+H G
Sbjct: 138 GVSIRSTALYIYTSGTTGLPKAARISHLRV-LQCSGMLSLCGVTADDVVYTTLPLYHSSG 196
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIW 252
++ + GAT+ PKFS W
Sbjct: 197 ALLGIVGCIGLGATLVLKPKFSASQFW 223
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 42/196 (21%)
Query: 15 RDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70
+D VA+R + ++ Y+Y +L + + +++L L G R
Sbjct: 58 KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDR 100
Query: 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREV- 128
+ I E +LG +G I PL ++ E + + DS+ ++++T
Sbjct: 101 VFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP 160
Query: 129 ------LQNV-----ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
L++V + G + +S+ FD E D ED A++ Y
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDE--FD---IEWTDR---EDGAILHY 212
Query: 178 TSGTTGKPKGVVHTHK 193
TSG+TGKPKGV+H H
Sbjct: 213 TSGSTGKPKGVLHVHN 228
|
Length = 570 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 48/202 (23%)
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCL 218
+ A ++TSG+TG PK V++TH+ + A QML + + + + + + L
Sbjct: 200 DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWL 259
Query: 219 PLHHVHG---LFNALLA---PLY--AGA-TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
P +H G +L LY G T + ++R + RE P
Sbjct: 260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDE-TLRNL----REISP--------- 305
Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---QLRLMMCGSSALPLPVMQQWETI 326
T + VP G+E + L+ +A + +L+L+ +AL V W+ +
Sbjct: 306 -TVYFNVPK-------GWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDV---WDRL 354
Query: 327 -------TGHR--LLERYGMTE 339
G R ++ GMTE
Sbjct: 355 DRVAEATCGERIRMMTGLGMTE 376
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 46/189 (24%)
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCLPLHHVHG---LF 227
A ++TSG+TG PK V++TH+ + A M+ + W + + + + LP +H G F
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNF 226
Query: 228 NALLA---PLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
N +L LY G V + + ++R + RE P T + VP
Sbjct: 227 NMVLYNGGTLYIDDGKPVPGLFEETLRNL----REVSP----------TVYFNVP----- 267
Query: 283 LIQGYEAMDTELQAASASAA---KQLRLMMCGSSALPLPVMQQWETI-------TGHR-- 330
+G+E + L+ +A K+LRL+ +ALP V W+ + TG R
Sbjct: 268 --KGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDV---WDRLQALAVRTTGERIP 322
Query: 331 LLERYGMTE 339
+ G TE
Sbjct: 323 MTSGLGATE 331
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 80/374 (21%), Positives = 141/374 (37%), Gaps = 91/374 (24%)
Query: 28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
+Y ++ +A+RI S + S + G R GI E++ +
Sbjct: 79 TYKEVYDAAIRIGSAIRSRGVNP-----------------GDRCGIYGSNCPEWIIAMEA 121
Query: 88 TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
G VPL + + + +++ +++S+ E + + K + I
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFG 181
Query: 148 NVSSE---------TTVFDQSQAEKMDGQRGEDPA-------LIVYTSGTTGKPKGVVHT 191
+VSSE + F + M E P I+YTSGTTG+PKGV+ T
Sbjct: 182 DVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241
Query: 192 HKSIDAQV----QMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAP--LYAGATVEFMP 244
+++I A+V +L T D + LPL HV ++ ++ + GA++ F
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV---YDQVIETYCISKGASIGFW- 297
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--------------- 289
+ +R + + + P T F GVP +Y R+ G
Sbjct: 298 QGDIRYLMEDVQALKP----------TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDF 347
Query: 290 --------MDTELQAASAS---------AAKQ-----LRLMMCGSSALPLPVMQQWETIT 327
+ L+ AS K+ +RL++ G++ LP V + +
Sbjct: 348 AYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTS 407
Query: 328 GHRLLERYGMTEGC 341
L + YG+TE C
Sbjct: 408 CSVLSQGYGLTESC 421
|
Length = 660 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 42/289 (14%)
Query: 61 AVLAG-GC--GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
AVL GC G R+ ++A+ S VA G I VPL SEL ++ D++
Sbjct: 37 AVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPR 96
Query: 118 MVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
++L + VA+ L + + + + +R +LI++
Sbjct: 97 LLLGDD-------AVAAGRTDVEDLAAFIASADALEPAD----TPSIPPER---VSLILF 142
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
TSGT+G+PKGV+ + +++ + FL P+ H+ GL ++ L G
Sbjct: 143 TSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202
Query: 238 ATVE----FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
++ F PK ++ R P G IT + VP M + + D
Sbjct: 203 GSILVSNGFEPKRTLG------RLGDPALG------ITHYFCVPQM-AQAFRAQPGFD-- 247
Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCT 342
A+A + L + G + + W G +++ +GM+E T
Sbjct: 248 -----AAALRHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSEAGT 290
|
Length = 488 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 75/320 (23%), Positives = 119/320 (37%), Gaps = 86/320 (26%)
Query: 27 YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
SY +L + R+++LL A L G R+ + + E V +L
Sbjct: 1 LSYAELREQSARVANLL-----------------ADLGVKPGDRVAGLLPRTPELVVAIL 43
Query: 87 GTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP 145
TW G I VPL ++ P++ I L + V+ N A++
Sbjct: 44 ATWRVGAIYVPLFTAFGPKA----------IEYRLGHSGAKVVVTNAANRG--------- 84
Query: 146 VPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA 205
K+D +D +YTSGTTG PKGV ++ A + A
Sbjct: 85 -----------------KLD----DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYA 123
Query: 206 WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQ---RWRESYPV 261
+ D F + +GL+ A+ PL G T F+ F+ + R
Sbjct: 124 IDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLG----- 178
Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PV 319
+T F G PT Y L+ A A+A +L+L + S+ PL V
Sbjct: 179 --------VTNFAGSPTAYRMLMA---------AGADAAARIKLKLRVASSAGEPLNPEV 221
Query: 320 MQQWETITGHRLLERYGMTE 339
++ ++ G + + YG TE
Sbjct: 222 VRWFQANLGVTIHDHYGQTE 241
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
E MD EDP I+YTSG+TGKPKGVVHT
Sbjct: 219 PEPMDA---EDPLFILYTSGSTGKPKGVVHTT 247
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
DP ++++TSGTTG PK V +H + + LTE + T D +PL H + + A
Sbjct: 150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVM-A 208
Query: 230 LLAP-LYAGATVEFMPKFSVRG 250
AP + +GA V KFS G
Sbjct: 209 GWAPAVASGAAVALPAKFSASG 230
|
Length = 540 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
D+ + E MD EDP I+YTSG+TGKPKGV+HT
Sbjct: 235 DECEPEPMDA---EDPLFILYTSGSTGKPKGVLHT 266
|
Length = 637 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 48/190 (25%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
++A R + +Y QL + R+++ + L + S ++ G
Sbjct: 15 QTIAYRYQGQELTYQQLKEQSDRLAAFIQKRIL--------PKKSPIIVYG--------- 57
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ LG+ SG +P+ S P + ++ + +V+ T
Sbjct: 58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTA------------ 105
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ----------RGEDPALIVYTSGTTGKP 185
+ + T + S E+ + +G+D I+YTSG+TG P
Sbjct: 106 ---------ELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNP 156
Query: 186 KGVVHTHKSI 195
KGV +H ++
Sbjct: 157 KGVQISHDNL 166
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 9/186 (4%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVP--LALSYPESE-----LLHVMHDSDISMVL 120
G R+ +V +F+A G ++G I VP LS S+ L + H +++ L
Sbjct: 35 GDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVAL 94
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYT 178
++E + L++ + KF P + +E + + D A I Y
Sbjct: 95 TSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYK 154
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
+ G GV TH+++ Q L +A +YT ++ L G ++ L + G
Sbjct: 155 TSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGM 214
Query: 239 TVEFMP 244
+P
Sbjct: 215 HTILIP 220
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 80/348 (22%), Positives = 133/348 (38%), Gaps = 71/348 (20%)
Query: 19 AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78
I + + S+D+LA A R + L + V G C A ++ +
Sbjct: 4 TIISGDRRRSFDELAQRAARAAGGLAA--------------LGVRPGDCVA---LLMRND 46
Query: 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK--S 136
F F G AVP+ + E+ +++ DS ++++ D +L +AS +
Sbjct: 47 FAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHAD---LLHGLASALPA 103
Query: 137 GAKFSLIPPVPNVSSE-------------TTVFDQ--SQAEKMDGQRGEDPALIVYTSGT 181
G +P P +++ ++ +Q E DG P ++YTSGT
Sbjct: 104 GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGT 163
Query: 182 TGKPKGVVH---THKSIDAQVQMLTEAWEYTSADQFLHCLPLHH----VHGLFNALLAPL 234
TG PKGV T + A QM + + L PL+H +GL L
Sbjct: 164 TGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRL--- 220
Query: 235 YAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
G + P+F + + +R R IT VPTM+ RL++ E +
Sbjct: 221 --GGVLVLQPRFDPEELLQLIERHR-------------ITHMHMVPTMFIRLLKLPEEVR 265
Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+ +S LR ++ ++ P V + G + E YG TE
Sbjct: 266 AKYDVSS------LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307
|
Length = 509 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 38/185 (20%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAW------EYTSADQ--FLHCLP 219
+D A + YT GTTG KG H++I A V QM EAW + DQ F+ LP
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM--EAWLQPAFEKKPRPDQLNFVCALP 260
Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGV 276
L+H+ L LL + G +P + R I +E Y V+ F V
Sbjct: 261 LYHIFALTVCGLLG-MRTGGRNILIP--NPRDIPGFIKELKKYQVH---------IFPAV 308
Query: 277 PTMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
T+Y L+ ++ +D +L + G A+ PV ++W +TG + E
Sbjct: 309 NTLYNALLNNPDFDKLDF----------SKLIVANGGGMAVQRPVAERWLEMTGCPITEG 358
Query: 335 YGMTE 339
YG++E
Sbjct: 359 YGLSE 363
|
Length = 557 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAW-EYTSADQFLHCLPLHHV 223
+D ALI+YTSGTTG PKGV+HTH S+ A + L + + + LPL H+
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI 322
|
Length = 700 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
P F + G SG + V L + + L + +D +VL+ + E+L
Sbjct: 65 PEFSLLLGAAA--LSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD------ 116
Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGVVH 190
L P V ++ ++ + A D + +D ++++TSGT+G PK V
Sbjct: 117 ----GLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRC 172
Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
TH+ + + ML + + D +PL H + + L AGA++ KFS G
Sbjct: 173 THRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232
|
Length = 529 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 53/232 (22%), Positives = 82/232 (35%), Gaps = 60/232 (25%)
Query: 27 YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
YSY +L + R +++L S L G G R+ + S E L
Sbjct: 1 YSYQELKELSARFANVLAS-----------------LGVGKGERVFTLLPRSPELYVAAL 43
Query: 87 GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
GT G + PL ++ + + + ++++T
Sbjct: 44 GTLKLGAVYGPLFSAFGPEPIRDRLELGEAKVLITTP----------------------- 80
Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
E+ D EDPAL+ +TSGTTGKPKGV+H H+++ A
Sbjct: 81 ------------ELYERTDP---EDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125
Query: 207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMPKFSVRGIWQRWRE 257
+ D + V G ++APL G T V +F RW
Sbjct: 126 DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAE----RWYG 173
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 59/285 (20%), Positives = 112/285 (39%), Gaps = 38/285 (13%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G G + ++ K S F+ + G + +P+ E+ +++ D+ ++L E++
Sbjct: 50 GQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTG 183
++ K I +++ Q E D ++YTSGTT
Sbjct: 110 DAIVALETPK-------IVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTD 162
Query: 184 KPKGVVHTH-----KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
+PKGV+H++ KSID A T++++ L PL+HV +A L+ G
Sbjct: 163 RPKGVMHSYGNLHWKSIDH-----VIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217
Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
T+ +F + V +T P M +R++ + +L +
Sbjct: 218 TLRIHREF----------DPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS-- 265
Query: 299 ASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEGCT 342
L + G P ++ + T R ++ YG+TE C+
Sbjct: 266 ------LAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCS 304
|
Length = 497 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
+ E MD EDP I+YTSG+TGKPKGV+HT
Sbjct: 229 EPEPMDS---EDPLFILYTSGSTGKPKGVLHT 257
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 77/319 (24%), Positives = 122/319 (38%), Gaps = 59/319 (18%)
Query: 47 DLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESE 106
DLK S K N A L G G + + K +EF +L G IA+P +
Sbjct: 52 DLKDYSNKAANFFKA-LGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110
Query: 107 LLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLI---PPVPN--------VSSET 153
+++ + + I M++ + E + A + G+ L+ PVP + + +
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170
Query: 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
F++ D +D L+ +TSGTTG PK V H H +A +
Sbjct: 171 PDFERPTGN--DATCNDDILLVYFTSGTTGMPKMVEHDH---------TYPLGHIVTA-K 218
Query: 214 FLHCLPLHHVH------GLFNALLAPLY----AGATVEF---MPKFSVRGIWQRWRESYP 260
+ + +H G A+ LY AGA V F KF + + ++ E Y
Sbjct: 219 YWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIAGAAV-FVYDYDKFDPKNLLEKI-EKY- 275
Query: 261 VNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320
+T F PT+Y LI+ D S+ LR L V
Sbjct: 276 --------GVTTFCAPPTIYRFLIK----EDLSKYDLSS-----LRYCTTAGEPLNPEVF 318
Query: 321 QQWETITGHRLLERYGMTE 339
++ TG +L+E +G TE
Sbjct: 319 NTFKEKTGIKLMEGFGQTE 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
G R+ I+A ++VAG +G IAVPL A P +E L + D++ ++VL+T
Sbjct: 92 GDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTA 151
Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
E L+N+ + I +P+ + E+ V + +D + + YTSG
Sbjct: 152 AAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDT--------DDVSHLQYTSG 203
Query: 181 TTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
+T P GV TH+++ VQM+ + LPL+H GL +Y G +
Sbjct: 204 STRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHS 263
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITA 272
P VR QRW ++ G+R G +TA
Sbjct: 264 TLMSPTAFVRRP-QRWIKALS-EGSRTGRVVTA 294
|
Length = 612 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-08
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PKGVV+ H+ ++A +L AW +L LP+ H +G
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNIL--AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA 246
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
AG V + K + I+ RE +T + G P + + LI
Sbjct: 247 RAGTNV-CLRKVDPKLIFDLIRE----------HGVTHYCGAPIVLSALINAPAEW---- 291
Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A + M+ G +A P V+ + E I G L YG+TE
Sbjct: 292 ---RAGIDHPVHAMVAG-AAPPAAVIAKMEEI-GFDLTHVYGLTE 331
|
Length = 545 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL--PLHH 222
D R +DP L+ +TSGTTG PK V+HTH S + T W + P
Sbjct: 79 DETRADDPILLYFTSGTTGLPKLVLHTHVSYPVG-HLSTMYWIGLQPGDIHLNISSPGWA 137
Query: 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
H +++ AP AGATV + P+F R + +T F PT++
Sbjct: 138 KHA-WSSFFAPWNAGATVFGINYPRFDARRYLGALEKF----------GVTTFCAPPTVW 186
Query: 281 TRLIQ-GYEAMDTELQAASASAAKQLRLMMCGSSALPLP-VMQQWETITGHRLLERYGMT 338
IQ D L+ A SA + L P V+++ + G + + YG T
Sbjct: 187 RMFIQQDLAQYDVRLREA-VSAGEPLN-----------PEVIERVKKAWGLTIRDGYGQT 234
Query: 339 E 339
E
Sbjct: 235 E 235
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 40/225 (17%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
++A+R + + ++ QL + ++++ + E S V +
Sbjct: 18 QAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVV--------EGSGVA---------LRG 60
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
K S E + L G +PL P+ L ++ + L E
Sbjct: 61 KNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGEN--------- 111
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
FS + + E A QR A + TSG+TG PK VHT ++
Sbjct: 112 ---TFSALTSLHLQLVEGA-----HAVAWQPQR---LATMTLTSGSTGLPKAAVHTAQAH 160
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP-LYAGAT 239
A + + +T+ D +L LPL HV G ++ LYAGAT
Sbjct: 161 LASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGAT 203
|
Length = 458 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNA 229
D AL+ TSG+TG PK V TH ++ A + + A E+ D + LPL H G+
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGF 212
Query: 230 LLAPLYAGATV 240
L P+Y GA +
Sbjct: 213 LTVPMYFGAEL 223
|
Length = 545 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTH-------KSIDAQVQMLTEAWEYTSADQF 214
++ Q+ ++YTSGTTG PKGV+ +H K+ + + T E
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQES-----V 196
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG-IWQRWRESYPVNGNRAGEAITAF 273
+ LPL H+ + P+ G V F +++G + + RE P TAF
Sbjct: 197 VSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRP----------TAF 246
Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
GVP + +E + ++A A + R +
Sbjct: 247 MGVP-------RVWEKIQERMKAVGAKSTGLKRKI 274
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 150 SSETTVFDQSQAEKMDGQRGEDP--------ALIVYTSGTTGKPKGVVHTHKSIDAQVQ- 200
SS TV S+ EK+ + DP A+I+YTSG+TG PKGV+ TH +I A V
Sbjct: 222 SSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG 281
Query: 201 MLTEAWEYTSADQFLHCLPLHHV 223
++T + D +L LPL H+
Sbjct: 282 VMTVVPKLGKNDVYLAYLPLAHI 304
|
Length = 696 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 59/210 (28%), Positives = 82/210 (39%), Gaps = 62/210 (29%)
Query: 157 DQSQAEKM-DGQRGEDP-----ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
D+ +A + D R +P AL+V TSGTTG PKG MLT A S
Sbjct: 16 DERRAALLRDALRVGEPIDDDVALVVATSGTTGTPKGA------------MLTAAALTAS 63
Query: 211 AD----------QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYP 260
AD Q+L LP HH+ GL L+ + AG+ P
Sbjct: 64 ADATHDRLGGPGQWLLALPAHHIAGL-QVLVRSVIAGSE--------------------P 102
Query: 261 VNGN-RAGEAITAFTGV------PTMYTRL--IQGYEAMDTELQAASASAAKQLRLMMCG 311
V + AG TA YT L +Q +A+D A+ +A +L ++ G
Sbjct: 103 VELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD---PAATAALAELDAVLVG 159
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEGC 341
P PV+ G ++ YGM+E
Sbjct: 160 GGPAPAPVLDAAAAA-GINVVRTYGMSETS 188
|
Length = 358 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
+ ED A+I++TSGT PKGV TH ++ A + + + D + LP H +G
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYG 238
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESY-PVNGNRAGEAI-----TAFTGVPTM 279
+ L PL +G V F +Y P+ + E I T P
Sbjct: 239 FNSCTLFPLLSGVPVVF---------------AYNPLYPKKIVEMIDEAKVTFLGSTPVF 283
Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
+ +++ + ++ L + LR ++ G A + Q+ H +L + YG T
Sbjct: 284 FDYILKTAKKQESCLPS--------LRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTT 335
Query: 339 E 339
E
Sbjct: 336 E 336
|
Length = 539 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 44/174 (25%), Positives = 62/174 (35%), Gaps = 38/174 (21%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLF 227
G+ A YTSGTTG PK +H H V M +A T D L ++ +GL
Sbjct: 144 GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203
Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT-----GVPTMYTR 282
N++ PL G + PV A F GVP + R
Sbjct: 204 NSVWFPLATGGSAVINS--------------APVTPEAAAILSARFGPSVLYGVPNFFAR 249
Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYG 336
+I + S + + LR ++ AL E RL+E +G
Sbjct: 250 VI----------DSCSPDSFRSLRCVVSAGEAL--------ELGLAERLMEFFG 285
|
Length = 705 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 35/141 (24%)
Query: 124 DYREVLQNVAS--KSGAKFSLIPPV----------PNVSSETTVFDQSQAEKMDGQRGE- 170
D RE + + S ++P + + + +A ++ +R
Sbjct: 176 DRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF 235
Query: 171 -DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-- 227
P I+Y+SGTTG PK +VH L + + LHC L LF
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAGG------TLLQHLKEHG----LHC-DLRPGDRLFYY 284
Query: 228 --------NALLAPLYAGATV 240
N L++ L +GAT+
Sbjct: 285 TTTGWMMWNWLVSGLLSGATL 305
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 51/213 (23%), Positives = 75/213 (35%), Gaps = 57/213 (26%)
Query: 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV---QMLT 203
V V D G D ++Y+SGTTG+PKG+ + D + L
Sbjct: 136 VGYAEAVAGLPATPIADESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQ 192
Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-------GATVEFMPKF----SVRGIW 252
W + S +L PL+H AP A G TV M F + I
Sbjct: 193 RLWGFRSDMVYLSPAPLYHS--------APQRAVMLVIRLGGTVIVMEHFDAEQYLALI- 243
Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
+ + +T VPTM++R+++ E + + +S A
Sbjct: 244 EEYG-------------VTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIH-------- 282
Query: 313 SALPLPV-----MQQWETITGHRLLERYGMTEG 340
+A P P M W G + E Y TEG
Sbjct: 283 AAAPCPPQVKEQMIDW---WGPIIHEYYAATEG 312
|
Length = 511 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 170 EDP---ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVH 224
EDP IVYTSGT+GKPKGV+ ++K++ V L + ++ + L LP+ H++
Sbjct: 301 EDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360
Query: 225 GLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
A L+ G T+ K FS + I+ N G + GVP ++
Sbjct: 361 ERVIAYLS-FMLGGTINIWSKDINYFS-KDIY-----------NSKGNIL---AGVPKVF 404
Query: 281 TRL 283
R+
Sbjct: 405 NRI 407
|
Length = 746 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 175 IVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWE--YTSADQFLHCLPLHHV 223
I+YTSGT+G PKGVV TH+++ V + E +E T D +L LPL H+
Sbjct: 225 IMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI 278
|
Length = 660 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQ----------- 213
R D ++YT GTTG PKGV+ + I +V + + E T +
Sbjct: 1 RSADDLYMLYTGGTTGMPKGVMWRQEDI-FRVLLGGPDFATGEPTLEELAKQVAAGGAGT 59
Query: 214 -FLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ 253
FL PL H G + AL A L+AG TV +P KF +W+
Sbjct: 60 RFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWR 101
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
Q DP + YTSGTT PKGVV +H+ WE + +L LP+ H +G
Sbjct: 183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGW 242
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
G +V M + I++ N +T VPT++ L++G
Sbjct: 243 TFTWGTAARGGTSV-CMRHVTAPEIYK----------NIEMHNVTHMCCVPTVFNILLKG 291
Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346
L + S + + G S P ++++ + + G +++ YG+TE
Sbjct: 292 -----NSLDLSPRSGPVHV---LTGGSPPPAALVKKVQRL-GFQVMHAYGLTEATGPVLF 342
Query: 347 C-WQ 349
C WQ
Sbjct: 343 CEWQ 346
|
Length = 579 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 35/184 (19%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ----------FLHCLP 219
+D A++ YT GTTG KG + TH ++ A + + D + LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266
Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGI---WQRWRESYPVNGNRAGEAITAFTG 275
L+H++ N + + V + G +WR +A G
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWR-------------FSALLG 313
Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
+ T++ L+ D + A L+L G +AL ++WE +TG ++E Y
Sbjct: 314 LNTLFVALMDHPGFKDLDFSA--------LKLTNSGGTALVKATAERWEQLTGCTIVEGY 365
Query: 336 GMTE 339
G+TE
Sbjct: 366 GLTE 369
|
Length = 562 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 38/188 (20%)
Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
+ E+P+L+ Y+SGTTG+PK + + ID +++ EA + + P+
Sbjct: 93 LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVT 152
Query: 222 HVHGLFNALLAPLYAGATVEFM----PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
H +GL +LA L G+ + PKF R P + VP
Sbjct: 153 HSYGLICGVLAALTRGSKPVIITNKNPKF----ALNILRN-TPQH---------ILYAVP 198
Query: 278 TMY---TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
M RL+ G Q +M + LP + T + ++++
Sbjct: 199 LMLHILGRLLPGTF---------------QFHAVMTSGTPLPEAWFYKLRERTTY-MMQQ 242
Query: 335 YGMTE-GC 341
YG +E GC
Sbjct: 243 YGCSEAGC 250
|
Length = 414 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
D D +YTSGTTG PK V H A+ D CLPL+H
Sbjct: 97 SQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYH 156
Query: 223 ----VHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
+ G+ ALL G+TV KFS W
Sbjct: 157 SAGGIMGVGQALL----HGSTVVIRKKFSASNFW 186
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
AL+ TSGTT PK V+H ++ + + A+ Y L LP V G F+ L
Sbjct: 182 AGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG-FSTL 240
Query: 231 LAPLYAGATVEFMPKF 246
L L GA + P F
Sbjct: 241 LGALAGGAPLVCEPVF 256
|
Length = 540 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 171 DPALIVYTSGTTGKPKGVVHTH 192
P I+Y+SGTTG PK +VH H
Sbjct: 264 HPLWILYSSGTTGLPKCIVHGH 285
|
Length = 655 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 169 GEDPALIVYTSGTTGKPKGVV 189
DP I+YTSGTTGKPKGVV
Sbjct: 219 STDPLYILYTSGTTGKPKGVV 239
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 170 EDPALIVYTSGTTGKPKGVVHT 191
EDP ++YTSG+TGKPKGV+HT
Sbjct: 275 EDPLFLLYTSGSTGKPKGVLHT 296
|
Length = 666 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM----------LTEAWEYTSADQFLHCLP 219
+DP +TSGTTG+PK V TH QM L T D L P
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTHG------QMAFVITNHLADLMPG--TTEQDASLVVAP 214
Query: 220 LHH---VHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ---RWR 256
L H +H L + GA +P +F +W R R
Sbjct: 215 LSHGAGIHQLCQ-----VARGAATVLLPSERFDPAEVWALVERHR 254
|
Length = 528 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 63/301 (20%), Positives = 114/301 (37%), Gaps = 37/301 (12%)
Query: 43 LCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
L +L+ +E G G +G++ + FV V G VP++
Sbjct: 61 LSYRELQRATESLARR--LTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTE 118
Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161
+ L + IS V++ ++ E + + + ++I P T ++S
Sbjct: 119 FRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDP------ATAGAEESGG 168
Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCL 218
G +++ TSGTTGKPKGV + ++ V +L + + + +
Sbjct: 169 RPAVAAPGR---IVLLTSGTTGKPKGVPRAPQLRSAVGVWVTIL-DRTRLRTGSRISVAM 224
Query: 219 PLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
P+ H G L+ + G TV F + + +RA AFT VP
Sbjct: 225 PMFHGLG-LGMLMLTIALGGTVLTHRHFDAEAALAQ------ASLHRA----DAFTAVPV 273
Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
+ R+ ++ + + + QLR++M L + Q++ G L YG T
Sbjct: 274 VLARI------LELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGST 327
Query: 339 E 339
E
Sbjct: 328 E 328
|
Length = 516 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 41/178 (23%)
Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQV-QMLT-------EAWEYTSADQFLHCLPLHHVHG 225
+++ TSGTTG PKG S A + +L+ E + P+ H G
Sbjct: 211 IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPA--------PMFHATG 262
Query: 226 LFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
+ LA + G+TV +F ++ I + + TA VP M +
Sbjct: 263 WAHLTLA-MALGSTVVLRRRFDPEATLEDI-AKHK-------------ATALVVVPVMLS 307
Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
R++ + L S+ L+++ SAL + + G L YG TE
Sbjct: 308 RIL---DLGPEVLAKYDTSS---LKIIFVSGSALSPELATRALEAFGPVLYNLYGSTE 359
|
Length = 549 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 171 DPALIVYTSGTTGKPKGV 188
+P+ I+YTSGTTGKPKGV
Sbjct: 234 EPSYILYTSGTTGKPKGV 251
|
Length = 629 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 33/178 (18%)
Query: 173 ALIVYTSGTTGKPKGVVHT--HKSIDAQ----VQMLTEAWEYTSADQFLHCLPLHHVH-- 224
A+++Y+SGTTG PKG+ + +DA V + ++ + +D + P++H
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL 210
Query: 225 ---GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
+ +AL G TV +F + E Y IT VPTM+
Sbjct: 211 RWCSMVHAL------GGTVVLAKRFDAQATL-GHVERY---------RITVTQMVPTMFV 254
Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
RL++ +D +++ + LR ++ ++ P+ V G + E Y TE
Sbjct: 255 RLLK----LDADVR--TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTE 306
|
Length = 501 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSI----DAQVQMLTEAWE-YTSADQFLHCLPLH 221
++ D I+YTSGTTG PKGV+ +++SI +++L A T D +L LPL
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279
Query: 222 HV 223
H+
Sbjct: 280 HI 281
|
Length = 666 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCL 218
+ + TSG+TG PK V H+ ++ ++ Q + + + + C+
Sbjct: 86 VDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCV 145
Query: 219 PLHHVHG-LFNALLAPLYAGATV 240
P HH++G LF+ LL P G
Sbjct: 146 PAHHLYGFLFSCLL-PSRRGLEA 167
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 171 DPALIVYTSGTTGKPKGV--------VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
+P+ I+YTSGTTGKPKGV V S+ A + ++++D +
Sbjct: 233 EPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD-------VGW 285
Query: 223 VHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVN 262
V G + APL AGA E +P G+W E Y V
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVR 328
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHG 225
YTSGTT PKGVV H+ A + L+ A W +L LP+ H +G
Sbjct: 202 YTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250
|
Length = 567 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 37/286 (12%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G+R+ +++ E VL G IAV + P + + +D + L +
Sbjct: 66 GSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSK- 124
Query: 128 VLQNVASKSGAK-FSLIPPVP-NVSSETTVFDQS-QAEKMDGQRG---EDPALIVYTSGT 181
+AS + + IP + ++++ T + S A + G EDP +++TSGT
Sbjct: 125 ----MASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGT 180
Query: 182 TGKPKGVVHTHKSIDAQVQMLTE---AW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
TG+PK V+ +++ A +L + W + + LP H+ GL+ L ++ G
Sbjct: 181 TGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGG 240
Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
V G + N VPT+ ++L+ ++ + + +
Sbjct: 241 LCVT--------GGENTTSLLEILTTNAVATTCL----VPTLLSKLVSELKSANATVPS- 287
Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-GCT 342
LRL+ G S ++ E TG R + YG++E GCT
Sbjct: 288 -------LRLVGYGGSRAIAADVRFIEA-TGVRTAQVYGLSETGCT 325
|
Length = 540 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.88 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.83 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.78 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.77 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.72 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.55 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.42 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.14 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.04 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 97.92 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 96.13 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 92.61 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 90.27 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.81 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.63 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 82.97 |
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=356.90 Aligned_cols=316 Identities=26% Similarity=0.392 Sum_probs=262.6
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCcc--ccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~--~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+++.+.|.++++.+|+++|+++.+.. +||+||.++++++|..|++ .|+++||+|+|+++|+
T Consensus 11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-----------------~~v~~gdrVail~~N~ 73 (534)
T COG0318 11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQA-----------------LGVKPGDRVAILLPNS 73 (534)
T ss_pred ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCC
Confidence 46889999999999999999998777 9999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccC-CCCCCC---Cccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP-PVPNVS---SETT 154 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~ 154 (359)
++++++++||+++|++++|+|+.++.+++.++++.++++.++++.+..+.........+....+.. ...... ....
T Consensus 74 ~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (534)
T COG0318 74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEA 153 (534)
T ss_pred HHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHH
Confidence 999999999999999999999999999999999999999999998865665555443322111111 111110 1111
Q ss_pred ccccchhh--hcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc--cCCCceEEEecCchhhHHHHHHH
Q 018211 155 VFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
........ .....+++|+++|+|||||||.||||++||++++.+.......++ ++++|++++++|++|.+|+...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~ 233 (534)
T COG0318 154 LAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL 233 (534)
T ss_pred HhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHH
Confidence 11111111 111156899999999999999999999999999999999888888 89999999999999999998877
Q ss_pred HHhhhcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc-cceE
Q 018211 231 LAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRL 307 (359)
Q Consensus 231 ~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~ 307 (359)
+.++..|+++++.+ .|+++.++.. +.++++|++.++|+++..++.+..... .+++ ++|.
T Consensus 234 ~~~~~~G~~~v~~~~~~f~~~~~~~~----------i~~~~~t~~~~vPt~~~~ll~~~~~~~--------~~~~~~lr~ 295 (534)
T COG0318 234 LAPLLGGGTLVLLSPEPFDPEEVLWL----------IEKYKVTVLSGVPTFLRELLDNPEKDD--------DDLSSSLRL 295 (534)
T ss_pred HHHHHcCCEEEeCCCCCcCHHHHHHH----------HHHhcceEEecchHHHHHHHhCCccCc--------cccccceEE
Confidence 88899999999998 5999999998 777889999999999999988744222 2344 4999
Q ss_pred EEecCCCCCHHHHHHHHHHhC-CcccccccCCcCccccccccccC
Q 018211 308 MMCGSSALPLPVMQQWETITG-HRLLERYGMTEGCTKGRHCWQST 351 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~TE~g~~~~~~~~~~ 351 (359)
+++||++++++++++|++.|+ .++++.||+||++++++.+..++
T Consensus 296 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~ 340 (534)
T COG0318 296 VLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD 340 (534)
T ss_pred EEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch
Confidence 999999999999999999997 57999999999998777766554
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=363.49 Aligned_cols=319 Identities=17% Similarity=0.238 Sum_probs=249.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeC-----CccccHHHHHHHHHHHHHHHhhC-CCCCccccccccccccccCCCC-------
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSN-DLKTTSEKTKNENSAVLAGGCG------- 68 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~-----~~~~Ty~el~~~~~~la~~L~~~-~~~~~~~~~~~~~~~~~gv~~g------- 68 (359)
|+.+.|.++++.+|+++|+++. ++++||+|+.++++++|+.|.+. + +|+++|
T Consensus 62 ~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~---------------~Gv~~g~~~~~~~ 126 (746)
T PTZ00342 62 HIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEG---------------KGIPEKKYNEEQN 126 (746)
T ss_pred hHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhh---------------cCCCcCccccccc
Confidence 6789999999999999999862 36899999999999999999961 0 288888
Q ss_pred ----CeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceec
Q 018211 69 ----ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSL 142 (359)
Q Consensus 69 ----d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~ 142 (359)
|+|+|+++|+++|+++++||+++|++.||+++.++.+++.+++++++++++|++.+..+.+.......+. .++.
T Consensus 127 ~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~ 206 (746)
T PTZ00342 127 NGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLII 206 (746)
T ss_pred cccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999987776666655444332 2222
Q ss_pred cCCCCCC------------------CCc----------------------------------ccccc-----------cc
Q 018211 143 IPPVPNV------------------SSE----------------------------------TTVFD-----------QS 159 (359)
Q Consensus 143 ~~~~~~~------------------~~~----------------------------------~~~~~-----------~~ 159 (359)
++..... ... ..... ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 286 (746)
T PTZ00342 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFD 286 (746)
T ss_pred ECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHH
Confidence 2221100 000 00000 00
Q ss_pred h-------hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh--ccCCCceEEEecCchhhHHHHHHH
Q 018211 160 Q-------AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 160 ~-------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
. ........++|++.|+|||||||.||||++||++++..+....... .....|++++++|++|++++.. .
T Consensus 287 ~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~ 365 (746)
T PTZ00342 287 DMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-A 365 (746)
T ss_pred HHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-H
Confidence 0 0012234678999999999999999999999999999877654432 2335689999999999999964 6
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh----h---H-----------
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM----D---T----------- 292 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~---~----------- 292 (359)
+.+++.|+++++.+. ++..+++. +.++++|+++++|.+++++.+..... + .
T Consensus 366 ~~~l~~G~~i~~~~~-~~~~l~~d----------i~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~ 434 (746)
T PTZ00342 366 YLSFMLGGTINIWSK-DINYFSKD----------IYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRK 434 (746)
T ss_pred HHHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 778999999999875 88899998 88899999999999999998642110 0 0
Q ss_pred ----------------HHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 293 ----------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 293 ----------------~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
...+.++..+++||.+++||+++++++.++|...+|++++++||+||+++.++..
T Consensus 435 ~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~ 505 (746)
T PTZ00342 435 SNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQ 505 (746)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeec
Confidence 0112223345899999999999999999999988999999999999998765543
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=323.50 Aligned_cols=316 Identities=20% Similarity=0.258 Sum_probs=261.4
Q ss_pred hHHHHHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
|+.+.|...++.-||+.|+++ .+.++||+|+.+.++++|..|.+ +|+++||+|++..||+.
T Consensus 51 Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-----------------lGL~kGDrVgvwgpN~~ 113 (596)
T KOG1177|consen 51 TIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-----------------LGLKKGDRVGVWGPNSY 113 (596)
T ss_pred cHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-----------------hcCCCCCEEEEecCChH
Confidence 577889999999999999987 45679999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhc----CCce----------
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKS----GAKF---------- 140 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~----~~~~---------- 140 (359)
+|+...+||.++|.+.+++||.+..+++++.+++.+++++|..+.+ .+.+.++.++. +..+
T Consensus 114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth 193 (596)
T KOG1177|consen 114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH 193 (596)
T ss_pred HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence 9999999999999999999999999999999999999999987643 33344433321 1110
Q ss_pred eccCC-CCCCCC---cccccccch-------hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccC
Q 018211 141 SLIPP-VPNVSS---ETTVFDQSQ-------AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT 209 (359)
Q Consensus 141 ~~~~~-~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 209 (359)
.++.+ ...... ..+...... ........|+|++.|.|||||||.|||+.+||-+++++.......+++.
T Consensus 194 vi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~ 273 (596)
T KOG1177|consen 194 VILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN 273 (596)
T ss_pred EEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence 01111 000000 011110000 0112345679999999999999999999999999999999999999999
Q ss_pred CCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhh
Q 018211 210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288 (359)
Q Consensus 210 ~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 288 (359)
.+++++...|++|.+|...+.++++..|+|++++. .|++.+.+++ |.++++|.++.+|++|..+++.
T Consensus 274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa----------i~~ekcT~l~gtPtM~~Dlln~-- 341 (596)
T KOG1177|consen 274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA----------ISNEKCTTLYGTPTMFVDLLNI-- 341 (596)
T ss_pred cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH----------HHhhceEEEecChHHHHHHhcc--
Confidence 99999999999999998889999999999999965 7999999999 8999999999999999999987
Q ss_pred hhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC-cccccccCCcCccccccccccCc
Q 018211 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHCWQSTS 352 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~~~~~~ 352 (359)
+....++++++|-++.||+++|+++.+.+.+..++ .+...||+||++.+.+....+++
T Consensus 342 ------~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~ 400 (596)
T KOG1177|consen 342 ------PQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDP 400 (596)
T ss_pred ------hhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCC
Confidence 34566789999999999999999999999998775 46678999999987776655543
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=343.95 Aligned_cols=320 Identities=23% Similarity=0.302 Sum_probs=250.1
Q ss_pred hHHHHHHHcCCCCCCceEEee----CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 2 EVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
++.+++.++++.+|+..|+.. ..+.+||+|+.+++.++|++|.+ .|+..||+|+|++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-----------------lg~~~gdrvai~a~n 79 (613)
T COG1022 17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLS-----------------LGIPAGDRVAIFAAN 79 (613)
T ss_pred cHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEeCC
Confidence 567889999999999999985 46899999999999999999999 789779999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc-cHHHHHHHhhhcCCceecc---C---CCC---
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSGAKFSLI---P---PVP--- 147 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~---~---~~~--- 147 (359)
+++|+++.+|++.+|++.||++++.+++++.+++++++++++|++.. ..+.+.......+...... + ...
T Consensus 80 r~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (613)
T COG1022 80 RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK 159 (613)
T ss_pred CHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchh
Confidence 99999999999999999999999999999999999999999999874 3444444433221100000 0 000
Q ss_pred -----CCCCc-cc---ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc-cCCCceEEEe
Q 018211 148 -----NVSSE-TT---VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHC 217 (359)
Q Consensus 148 -----~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~ 217 (359)
..... .. ..............++|+|.|+|||||||.||||++||+|+++++..+...+. ..++|+.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~Lsf 239 (613)
T COG1022 160 ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSF 239 (613)
T ss_pred hccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEe
Confidence 00000 00 01111112224567899999999999999999999999999999999999997 8899999999
Q ss_pred cCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh----hH-
Q 018211 218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM----DT- 292 (359)
Q Consensus 218 ~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~~- 292 (359)
+|+.|++.+.+.....++.|.++. ...+++.++++ +++++||.+.++|++|+.+.+..... +.
T Consensus 240 LPlaHi~Er~~~~~~~~~~g~~~~--~~~~~~~~~~d----------l~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~ 307 (613)
T COG1022 240 LPLAHIFERAFEGGLALYGGVTVL--FKEDPRTLLED----------LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV 307 (613)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEE--ecCCHHHHHHH----------HHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence 999999999754444444444444 44489999999 78899999999999999988763211 10
Q ss_pred -----------------------------------HHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccC
Q 018211 293 -----------------------------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM 337 (359)
Q Consensus 293 -----------------------------------~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~ 337 (359)
...+.++...+++|++++||+++++++...++. +|+++.++||+
T Consensus 308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~-lGi~i~eGYGl 386 (613)
T COG1022 308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGL 386 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHH-cCCCeEEEecc
Confidence 012223445579999999999999999877776 59999999999
Q ss_pred CcCccccccccccC
Q 018211 338 TEGCTKGRHCWQST 351 (359)
Q Consensus 338 TE~g~~~~~~~~~~ 351 (359)
|||+++++.+++..
T Consensus 387 TEts~~~~v~~~~~ 400 (613)
T COG1022 387 TETSAVVSVNPPDR 400 (613)
T ss_pred cccccceEEccccC
Confidence 99999888875443
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=342.32 Aligned_cols=304 Identities=21% Similarity=0.277 Sum_probs=243.9
Q ss_pred HHHcCC-CCCCceEEeeCC-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 7 AYKKGS-MARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 7 l~~~a~-~~p~~~ai~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+.++.. ..+++.|+++.+ +++||+||.+.++++|+.|++. .|+ +||+|++++|+.+|
T Consensus 15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~----------------~gv-kGDrV~iymp~~pe 77 (528)
T COG0365 15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDL----------------GGV-KGDRVAIYMPNSPE 77 (528)
T ss_pred hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHh----------------CCC-CCCEEEEEcCCCHH
Confidence 444433 347899999753 6899999999999999999874 478 99999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHh------hhcCCceeccCCCCCCCCccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA------SKSGAKFSLIPPVPNVSSETT 154 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 154 (359)
.++++|||+++|++.+|+.+.++++++.+.+++++++++|++.......+... +.... .+++.... ....+
T Consensus 78 ~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~--~~~~~ 154 (528)
T COG0365 78 AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG--LWYDE 154 (528)
T ss_pred HHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc--ccHHH
Confidence 99999999999999999999999999999999999999998865543222111 11111 22222111 11111
Q ss_pred cccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH-HhhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 155 VFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
.... .........+.+|+++|+|||||||+||||+++|.+++....... ..+...++|++++..++.|..|.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~ 234 (528)
T COG0365 155 AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFS 234 (528)
T ss_pred HhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHH
Confidence 1111 111112336779999999999999999999999997766555444 46778899999999999999999999999
Q ss_pred hhhcCcEEEEcCC--C-ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 233 PLYAGATVEFMPK--F-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 233 ~l~~G~~i~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
+|..|+++++.+. + +++.+++. ++++++|.++..|+.++.|.+... .+++++++||.+.
T Consensus 235 pL~~Gat~~~~eg~p~~~~~~~~~~----------ie~~~vt~~~tsPT~~R~l~~~g~--------~~~~dlssLr~~~ 296 (528)
T COG0365 235 PLASGATTVLYDGRPFYSPERLWEA----------LEKYKVTIFGTSPTFLRRLMKLGL--------GEPYDLSSLRVLG 296 (528)
T ss_pred HHhcCCeEEEeCCCCCCCHHHHHHH----------HHHhCCceEeeCHHHHHHHHhcCC--------cccccchhheeee
Confidence 9999999998864 2 38889998 899999999999999999998732 3567899999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.|||++++.++++.+.+|++|.+.||+||+|++.....
T Consensus 297 SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~ 335 (528)
T COG0365 297 SAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGR 335 (528)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCC
Confidence 999999999999999999999999999999996555543
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=337.91 Aligned_cols=310 Identities=25% Similarity=0.339 Sum_probs=258.0
Q ss_pred cCCCCCCc-eEEeeCC---ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHH
Q 018211 10 KGSMARDS-VAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85 (359)
Q Consensus 10 ~a~~~p~~-~ai~~~~---~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (359)
.+..++++ +.+++.. +.+||.|+++++.++|..|.+.| .|+++||+|++++||++++.+++
T Consensus 25 ~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~---------------~~i~~gDvV~i~~pNs~~~~~~~ 89 (537)
T KOG1176|consen 25 PAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELG---------------LGIKKGDVVGILAPNTPEFVELA 89 (537)
T ss_pred cccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcC---------------CCCCCCCEEEEEcCCCHHHHHHH
Confidence 33334444 6666644 99999999999999999999843 35899999999999999999999
Q ss_pred HHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccc-------cccc
Q 018211 86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-------VFDQ 158 (359)
Q Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 158 (359)
+||+..|++..++||.+...++.+.++.++++++|+|.+..+.+.+........++.+..........+ ....
T Consensus 90 la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (537)
T KOG1176|consen 90 LAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDL 169 (537)
T ss_pred HHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhc
Confidence 999999999999999999999999999999999999999999888776665544444433211111111 0000
Q ss_pred chh---hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhh
Q 018211 159 SQA---EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235 (359)
Q Consensus 159 ~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~ 235 (359)
... ........+|++.|.|||||||.||||++||++++.+.......+.++..|+.++.+|++|..|++..+.+++.
T Consensus 170 ~~~~~~~~~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~ 249 (537)
T KOG1176|consen 170 MPEGLPDGIRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLA 249 (537)
T ss_pred cccCCCcccccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHh
Confidence 000 01344566999999999999999999999999999998887777888889999999999999999876666888
Q ss_pred cCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCC
Q 018211 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (359)
Q Consensus 236 ~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 315 (359)
.|+++++.+.|+++.+++. +++|++|++.++|.++..|.+.+ ....++++++|.+.+||+++
T Consensus 250 ~~~~ii~~~~f~~~~~~~~----------i~kykvt~~~~vP~~~~~l~~~p--------~~~~~~l~sl~~v~~gga~~ 311 (537)
T KOG1176|consen 250 GGTTIICLRKFDAELFLDL----------IEKYKVTHLFLVPPVLNMLAKSP--------IVKKYDLSSLRSVLSGGAPL 311 (537)
T ss_pred CCceEEECCCCCHHHHHHH----------HHHhCEEEEEcChHHHHHHhcCC--------ccCcccCCccEEEEecCCCC
Confidence 8888988899999999999 89999999999999999999974 23457899999999999999
Q ss_pred CHHHHHHHHHHhC-CcccccccCCcCccccccccccCc
Q 018211 316 PLPVMQQWETITG-HRLLERYGMTEGCTKGRHCWQSTS 352 (359)
Q Consensus 316 ~~~~~~~~~~~~~-~~v~~~YG~TE~g~~~~~~~~~~~ 352 (359)
++++.+++++.++ ..+.++||+||+|+.++.+...++
T Consensus 312 ~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e 349 (537)
T KOG1176|consen 312 SPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE 349 (537)
T ss_pred CHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc
Confidence 9999999999997 899999999999987777766654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=352.44 Aligned_cols=317 Identities=23% Similarity=0.272 Sum_probs=251.1
Q ss_pred hHHHHHHHcCCCCCCceEEee----C-----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRA----D-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~----~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
++.+.+.+.++.+|+++|+.+ + .+.+||+||.++++++|+.|.+ +|+++||+|+
T Consensus 45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va 107 (651)
T PLN02736 45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-----------------HGIPKGACVG 107 (651)
T ss_pred CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEE
Confidence 678899999999999999942 2 2469999999999999999999 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCC--C
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN--V 149 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 149 (359)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+. ..+++..... .
T Consensus 108 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~ 187 (651)
T PLN02736 108 LYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPL 187 (651)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhh
Confidence 999999999999999999999999999999999999999999999999998766655554333321 1212111000 0
Q ss_pred ---C--------Ccccccccc--hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEE
Q 018211 150 ---S--------SETTVFDQS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH 216 (359)
Q Consensus 150 ---~--------~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 216 (359)
. ...+..+.. .........++|+++|+|||||||.||||++||++++.++......+++.++|++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~ 267 (651)
T PLN02736 188 PSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHIS 267 (651)
T ss_pred hhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEE
Confidence 0 000000000 001112345789999999999999999999999999999888888888999999999
Q ss_pred ecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhh-----
Q 018211 217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD----- 291 (359)
Q Consensus 217 ~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----- 291 (359)
.+|++|.++++ .++.++..|+++++.+. ++..+++. ++++++|+++++|.+++.+.+.....-
T Consensus 268 ~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 335 (651)
T PLN02736 268 YLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDD----------LAALRPTIFCSVPRLYNRIYDGITNAVKESGG 335 (651)
T ss_pred eCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEecchHHHHHHHHHHHHHHhcccH
Confidence 99999999996 57888999999998875 78888888 888999999999999998876531100
Q ss_pred -----------------------------HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcc
Q 018211 292 -----------------------------TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 292 -----------------------------~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~ 342 (359)
..+.+.+....+++|.+++||+++++++.+++.+.+|+++++.||+||+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~ 415 (651)
T PLN02736 336 LKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSC 415 (651)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhch
Confidence 000111111226899999999999999999999889999999999999987
Q ss_pred ccccc
Q 018211 343 KGRHC 347 (359)
Q Consensus 343 ~~~~~ 347 (359)
.++..
T Consensus 416 ~~~~~ 420 (651)
T PLN02736 416 VISGM 420 (651)
T ss_pred heecc
Confidence 66544
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=346.30 Aligned_cols=311 Identities=18% Similarity=0.226 Sum_probs=255.8
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.+.+.++.+|+++|++++++++||+||.++++++|+.|.+ .|+++||+|+++++|++++
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~-----------------~gi~~gd~V~i~~~n~~~~ 112 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLA-----------------LGVRAGDGVAVLARNHRGF 112 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHH
Confidence 46788999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccC-CCC------CCCCccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP-PVP------NVSSETT 154 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~ 154 (359)
+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+............+.. ... ......+
T Consensus 113 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
T PRK07788 113 VLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDD 192 (549)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHH
Confidence 999999999999999999999999999999999999999998776666554322221111111 100 0001111
Q ss_pred ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhh
Q 018211 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l 234 (359)
...... ........+++++++|||||||.||+|.++|.++...+......+++..+|+++...|++|..++. .++.++
T Consensus 193 ~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l 270 (549)
T PRK07788 193 LIAGSS-TAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAM 270 (549)
T ss_pred HhcCCC-CCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHH
Confidence 111001 111122356789999999999999999999999999888888888889999999999999999985 477789
Q ss_pred hcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCC
Q 018211 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314 (359)
Q Consensus 235 ~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~ 314 (359)
..|+++++...+++..+++. ++++++|++.++|+++..+++..... ....++++||.+++||++
T Consensus 271 ~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~gG~~ 334 (549)
T PRK07788 271 ALGSTVVLRRRFDPEATLED----------IAKHKATALVVVPVMLSRILDLGPEV------LAKYDTSSLKIIFVSGSA 334 (549)
T ss_pred HhCCEEEECCCCCHHHHHHH----------HHHhCCcEEEEHHHHHHHHHhCcccc------cCCCCCCceeEEEEeCCC
Confidence 99999999998999999998 88899999999999999998753210 122457899999999999
Q ss_pred CCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 315 LPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 315 l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++.++|.+.+|.++++.||+||++.++...
T Consensus 335 l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 367 (549)
T PRK07788 335 LSPELATRALEAFGPVLYNLYGSTEVAFATIAT 367 (549)
T ss_pred CCHHHHHHHHHHhCccceeccCcchhchhhccC
Confidence 999999999999999999999999998765543
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=350.83 Aligned_cols=315 Identities=23% Similarity=0.289 Sum_probs=239.9
Q ss_pred hHHHHHHHcCCCCCCceEEee----C-----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRA----D-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~----~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
|+.+.|.+.++.+|+++|+.. + .+++||+||.++++++|+.|.+ +|+++||+|+
T Consensus 44 t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va 106 (660)
T PLN02861 44 SPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-----------------RGVNPGDRCG 106 (660)
T ss_pred CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 578899999999999999963 1 1479999999999999999999 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--Cc-eeccCCCCCC
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AK-FSLIPPVPNV 149 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 149 (359)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+........ .. ++.+......
T Consensus 107 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 186 (660)
T PLN02861 107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSE 186 (660)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChh
Confidence 99999999999999999999999999999999999999999999999998766554444332221 11 1111111000
Q ss_pred ------------CCcccccccc-hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc-----cCCC
Q 018211 150 ------------SSETTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-----YTSA 211 (359)
Q Consensus 150 ------------~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~ 211 (359)
.......... .........++|+++|+|||||||.||||++||.+++..+......++ +.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~ 266 (660)
T PLN02861 187 QKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE 266 (660)
T ss_pred hhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCC
Confidence 0000000000 001122345789999999999999999999999999988776655443 4678
Q ss_pred ceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh-
Q 018211 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM- 290 (359)
Q Consensus 212 d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~- 290 (359)
|++++.+|++|.+++.. .+.+++.|+++++.+ +++..+++. ++++++|+++++|++++.++......
T Consensus 267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~~ 334 (660)
T PLN02861 267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMED----------VQALKPTIFCGVPRVYDRIYTGIMQKI 334 (660)
T ss_pred CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCcEEeechHHHHHHHHHHHHHH
Confidence 99999999999999865 455799999998874 588889988 88899999999999999887531100
Q ss_pred ------------------------------------hHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC-cccc
Q 018211 291 ------------------------------------DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLE 333 (359)
Q Consensus 291 ------------------------------------~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~ 333 (359)
.....+.++...+++|.+++||+++++++. +|.+.++. ++++
T Consensus 335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~ 413 (660)
T PLN02861 335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ 413 (660)
T ss_pred hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE
Confidence 000011111222689999999999999985 56666764 7999
Q ss_pred cccCCcCcccccc
Q 018211 334 RYGMTEGCTKGRH 346 (359)
Q Consensus 334 ~YG~TE~g~~~~~ 346 (359)
.||+||+++.++.
T Consensus 414 ~YG~TE~~~~~~~ 426 (660)
T PLN02861 414 GYGLTESCGGCFT 426 (660)
T ss_pred ecchhhhhhceee
Confidence 9999999875544
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=349.89 Aligned_cols=315 Identities=20% Similarity=0.259 Sum_probs=238.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeC----C-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~----~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
|+.+.|.+.++.+|+++|+.+. + +++||+||.++++++|+.|.+ +|+++||+|+
T Consensus 46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~Gd~Va 108 (666)
T PLN02614 46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-----------------VGVKDEAKCG 108 (666)
T ss_pred cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 6889999999999999999731 1 358999999999999999999 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--Cc-eeccCCCCC-
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AK-FSLIPPVPN- 148 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~- 148 (359)
|+++|+++|+++++||+++|+++||+++.++.+++.+++++++++++|++.+....+........ .. ++.+.....
T Consensus 109 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~ 188 (666)
T PLN02614 109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSRE 188 (666)
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChH
Confidence 99999999999999999999999999999999999999999999999998765443322211110 11 111211000
Q ss_pred -----------CCCcccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh-----ccCC
Q 018211 149 -----------VSSETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTS 210 (359)
Q Consensus 149 -----------~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~ 210 (359)
............ ........++|+++|+|||||||.||||++||++++..+......+ ++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 268 (666)
T PLN02614 189 QKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV 268 (666)
T ss_pred HhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC
Confidence 000000000000 0111234578999999999999999999999999998877655443 4678
Q ss_pred CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 211 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
+|++++++|++|.+++.. ....+..|+++++.+ +++..+++. +++++||+++++|++++.++......
T Consensus 269 ~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~ 336 (666)
T PLN02614 269 KDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIED----------LGELKPTIFCAVPRVLDRVYSGLQKK 336 (666)
T ss_pred CcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCeEEEecHHHHHHHHHHHHHH
Confidence 999999999999999864 566788999998875 588899998 88899999999999999987643210
Q ss_pred h-------------------------------------HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHh-CCccc
Q 018211 291 D-------------------------------------TELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLL 332 (359)
Q Consensus 291 ~-------------------------------------~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~ 332 (359)
- ....+......++||.+++||+++++.+ ++|.+.+ +++++
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~ 415 (666)
T PLN02614 337 LSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVL 415 (666)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEE
Confidence 0 0000111112378999999999999875 6676667 59999
Q ss_pred ccccCCcCcccccc
Q 018211 333 ERYGMTEGCTKGRH 346 (359)
Q Consensus 333 ~~YG~TE~g~~~~~ 346 (359)
+.||+||+++.++.
T Consensus 416 ~~YG~TE~~~~~~~ 429 (666)
T PLN02614 416 QGYGLTESCAGTFV 429 (666)
T ss_pred eeCchHhhhhheee
Confidence 99999999875544
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=341.40 Aligned_cols=311 Identities=22% Similarity=0.318 Sum_probs=252.5
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.+.++.+|+++|++++++.+||+||.++++++|+.|.+ +|+++||+|+++++|++++
T Consensus 8 ~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-----------------~Gv~~gd~V~v~~~n~~~~ 70 (563)
T PLN02860 8 HICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLR-----------------LGLRNGDVVAIAALNSDLY 70 (563)
T ss_pred HHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHHH
Confidence 67899999999999999999988999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhh-hcCC-ceeccCCCCC---------CC
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-KSGA-KFSLIPPVPN---------VS 150 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~---------~~ 150 (359)
+++++||+++|++++|+++.++.+++.++++++++++++++.+.......... ..+. ...++..... ..
T Consensus 71 ~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (563)
T PLN02860 71 LEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFL 150 (563)
T ss_pred HHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhcc
Confidence 99999999999999999999999999999999999999998765333322211 1111 1111111000 00
Q ss_pred Cccccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH
Q 018211 151 SETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228 (359)
Q Consensus 151 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 228 (359)
........ ..........++++++|+|||||||.||||.++|.+++.+.......+++.++|+++...|++|..++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~- 229 (563)
T PLN02860 151 TTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS- 229 (563)
T ss_pred ccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHH-
Confidence 00000000 000111123568999999999999999999999999998877777778899999999999999999985
Q ss_pred HHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEE
Q 018211 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (359)
Q Consensus 229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i 308 (359)
.++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++.... ......+++||.+
T Consensus 230 ~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~ 293 (563)
T PLN02860 230 SALAMLMVGACHVLLPKFDAKAALQA----------IKQHNVTSMITVPAMMADLISLTRK------SMTWKVFPSVRKI 293 (563)
T ss_pred HHHHHHHcCceEEecCCCCHHHHHHH----------HHHhCCeeEEeChHHHHHHHHhhhh------hhccccccceeEE
Confidence 57889999999999999999999998 8899999999999999999875211 1112457899999
Q ss_pred EecCCCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 309 ~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
++||+++++++.++|.+.| |.++++.||+||+++.++.
T Consensus 294 ~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 332 (563)
T PLN02860 294 LNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTF 332 (563)
T ss_pred EeCCCcCCHHHHHHHHHhcCCCceecCCCccccCccccc
Confidence 9999999999999999988 7999999999999876543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=340.38 Aligned_cols=308 Identities=20% Similarity=0.219 Sum_probs=250.4
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC-ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
++.+.|.+.++.+|+++|+.+.+ .++||+||.++++++|+.|.+ .+||+|+++++|+++
T Consensus 20 ~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~--------------------~~gd~Val~~~n~~e 79 (539)
T PRK06334 20 TVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK--------------------YPDQHIGIMMPASAG 79 (539)
T ss_pred cHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh--------------------ccCCeEEEEcCCchH
Confidence 57888999999999999998765 799999999999999999976 379999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhh---cCCceeccCCCCCCCCccccc-
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK---SGAKFSLIPPVPNVSSETTVF- 156 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~- 156 (359)
+++++|||+++|++++|+++.++.+++.++++++++++++++.+..+.+.+.... .+...+.+.............
T Consensus 80 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 159 (539)
T PRK06334 80 AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCR 159 (539)
T ss_pred HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhh
Confidence 9999999999999999999999999999999999999999998766555443221 111122211100000000000
Q ss_pred -----ccchh-----hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHH
Q 018211 157 -----DQSQA-----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226 (359)
Q Consensus 157 -----~~~~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 226 (359)
..... .......++++++|+|||||||.||||.+||+++..+.......++.+++|++++.+|++|.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 239 (539)
T PRK06334 160 IGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGF 239 (539)
T ss_pred hhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhh
Confidence 00000 01123467899999999999999999999999999888877778888999999999999999998
Q ss_pred HHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 018211 227 FNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305 (359)
Q Consensus 227 ~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l 305 (359)
...++.++..|+++++.. .+++..+++. ++++++|++.++|++++.+++... ....++++|
T Consensus 240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l 301 (539)
T PRK06334 240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEM----------IDEAKVTFLGSTPVFFDYILKTAK--------KQESCLPSL 301 (539)
T ss_pred HHHHHHHHHcCCeEEEecCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHHhhh--------hcccccccc
Confidence 767788999999999876 4789999998 888999999999999999987521 223467899
Q ss_pred eEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 306 RLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 306 ~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
|.+++||+++++++.+++.+.+ ++++++.||+||++++++..
T Consensus 302 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 344 (539)
T PRK06334 302 RFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN 344 (539)
T ss_pred cEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence 9999999999999999999988 78999999999998766544
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=337.11 Aligned_cols=312 Identities=24% Similarity=0.335 Sum_probs=259.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccc-cCCCCCeEEEEcCCCH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVL-AGGCGARIGIVAKPSF 79 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~-gv~~gd~V~i~~~n~~ 79 (359)
+++.+.|.+.++.+|+++|+.+.++++||+||.+++.++|..|.+ . |+++||+|+++++|++
T Consensus 10 ~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~-----------------~~g~~~g~~V~i~~~~~~ 72 (546)
T PRK08314 10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQ-----------------ECGVRKGDRVLLYMQNSP 72 (546)
T ss_pred CCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHH-----------------hhCCCCCCEEEEECCCCh
Confidence 468899999999999999999999999999999999999999998 6 9999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCC---------C
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV---------S 150 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 150 (359)
+++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+............++...... .
T Consensus 73 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (546)
T PRK08314 73 QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVP 152 (546)
T ss_pred HHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcc
Confidence 9999999999999999999999999999999999999999999887766655433322111111100000 0
Q ss_pred ------------------CcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCc
Q 018211 151 ------------------SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212 (359)
Q Consensus 151 ------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d 212 (359)
...+..............++++++|+|||||||.||+|.++|.+++.++......+++..+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d 232 (546)
T PRK08314 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES 232 (546)
T ss_pred cccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCc
Confidence 00000000001112234568999999999999999999999999999988888888889999
Q ss_pred eEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhH
Q 018211 213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292 (359)
Q Consensus 213 ~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 292 (359)
++++.+|++|..++...++.++..|+++++.+.+++..+++. ++++++|++.++|.++..++....
T Consensus 233 ~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~ll~~~~---- 298 (546)
T PRK08314 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----------IERYRVTHWTNIPTMVVDFLASPG---- 298 (546)
T ss_pred eEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH----------HHHhcCceecccHHHHHHHHhCCC----
Confidence 999999999999998888899999999999999999999988 888999999999999998876522
Q ss_pred HHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 293 ~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
....+++++|.+++||+++++++.++|.+.+|.++++.||+||++..+...
T Consensus 299 ----~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 349 (546)
T PRK08314 299 ----LAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSN 349 (546)
T ss_pred ----ccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecC
Confidence 122456789999999999999999999999999999999999998765543
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=334.02 Aligned_cols=312 Identities=20% Similarity=0.294 Sum_probs=255.4
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
++.+.|.+.++.+|+++|+++.+ +.+||.||.++++++|..|.+ .|+++||+|++++
T Consensus 25 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~Val~~ 87 (547)
T PRK13295 25 TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-----------------LGVGRGDVVSCQL 87 (547)
T ss_pred CHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEC
Confidence 67889999999999999999865 899999999999999999999 6999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhcCC-ceeccCCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFSLIPPVPNV 149 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~ 149 (359)
+|++++++++||++++|++++|+++.++.+++.+++++++++++++++.+ .+.+.++...... ...+.......
T Consensus 88 ~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (547)
T PRK13295 88 PNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGA 167 (547)
T ss_pred CCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999998754 2223333222211 11111111111
Q ss_pred CCccccc---------ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCc
Q 018211 150 SSETTVF---------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPL 220 (359)
Q Consensus 150 ~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl 220 (359)
....... ............++++++|+|||||||.||+|.++|.+++.++......+++.++|++++..|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (547)
T PRK13295 168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247 (547)
T ss_pred cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence 1110100 0000001122456899999999999999999999999999988888888889999999999999
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHh
Q 018211 221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300 (359)
Q Consensus 221 ~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 300 (359)
+|..+++..++.++..|+++++.+.+++..+++. ++++++|++.++|.++..+..... ....
T Consensus 248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~--------~~~~ 309 (547)
T PRK13295 248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL----------IRTEGVTFTMASTPFLTDLTRAVK--------ESGR 309 (547)
T ss_pred hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------ccCC
Confidence 9999988889999999999999999999999999 888999999999999999887532 1224
Q ss_pred hhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 301 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++||.+++||+++++++.+++.+.++.++++.||+||++.+.+.++
T Consensus 310 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 357 (547)
T PRK13295 310 PVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL 357 (547)
T ss_pred CcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence 578899999999999999999999999999999999999988765544
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=338.65 Aligned_cols=314 Identities=19% Similarity=0.267 Sum_probs=243.5
Q ss_pred hHHHHHHHcCCCCCCceEEeeC-----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
++.+.|.++++.+|+++|+++. ++.+||+||.++++++|+.|.+ +|+++||+|+++++
T Consensus 40 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~Vai~~~ 102 (614)
T PRK08180 40 RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-----------------RGLSAERPLMILSG 102 (614)
T ss_pred cHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEecC
Confidence 6788999999999999999864 2689999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCC-----HHHHHHHHhhCCceEEEeccc--cHHHHHHHhhhcCCceeccCCCCC-
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYP-----ESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPVPN- 148 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~- 148 (359)
|+++|++++|||+++|++++|+++.++ .+++.+++++++++++|++.. ....+..... .....+.......
T Consensus 103 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 181 (614)
T PRK08180 103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVEVVAVRGAVPG 181 (614)
T ss_pred CCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCceEEEecCCCCC
Confidence 999999999999999999999999998 789999999999999999753 2222222111 1111221111000
Q ss_pred --CCCcccccccch----hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccC--CCceEEEecCc
Q 018211 149 --VSSETTVFDQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT--SADQFLHCLPL 220 (359)
Q Consensus 149 --~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl 220 (359)
............ ........++|+++|+|||||||.||||++||+++..+.......++.. .++++++++|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl 261 (614)
T PRK08180 182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPW 261 (614)
T ss_pred cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecch
Confidence 001111111100 0111234568999999999999999999999999999888777766654 56899999999
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEcC-CCChh---HHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHH
Q 018211 221 HHVHGLFNALLAPLYAGATVEFMP-KFSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296 (359)
Q Consensus 221 ~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~---~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 296 (359)
+|.+++...++.+++.|+++++.+ .+++. .+++. ++++++|+++++|.++..+++..... ..
T Consensus 262 ~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~----~~ 327 (614)
T PRK08180 262 NHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRN----------LREISPTVYFNVPKGWEMLVPALERD----AA 327 (614)
T ss_pred HHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHH----------HHHhCCcEEechHHHHHHHHHHHHhc----hh
Confidence 999998777888999999999976 35554 44555 78899999999999999998753211 12
Q ss_pred HHHhhhccceEEEecCCCCCHHHHHHHHHH----hC--CcccccccCCcCccccccc
Q 018211 297 ASASAAKQLRLMMCGSSALPLPVMQQWETI----TG--HRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 297 ~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~----~~--~~v~~~YG~TE~g~~~~~~ 347 (359)
..+.++++||.+++||+++++++.++|.+. +| +++++.||+||++++++..
T Consensus 328 ~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~ 384 (614)
T PRK08180 328 LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFT 384 (614)
T ss_pred hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEec
Confidence 234568899999999999999999999875 33 7899999999998766543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=337.67 Aligned_cols=310 Identities=18% Similarity=0.188 Sum_probs=242.9
Q ss_pred HHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
.+.|.++++.+|+++|+++ .++++||+||.++++++|..|.+ +|+++||+|+++++|
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~n 117 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-----------------LGVGRGDRVLIYMPM 117 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence 3567777888999999987 23689999999999999999999 799999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhc---CCceeccCC
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP 145 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~ 145 (359)
+++++++++||+++|++++|+++.++.+++.+++++++++++|++... .+.+....... ...++.+..
T Consensus 118 ~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 197 (628)
T TIGR02316 118 IAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDR 197 (628)
T ss_pred CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999997532 22222221111 122222221
Q ss_pred CCCC--------CCcccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH-HHHHHHHhhccCCCceE
Q 018211 146 VPNV--------SSETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSADQF 214 (359)
Q Consensus 146 ~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~ 214 (359)
.... ....+...... ........++++++|+|||||||.||||+++|.+++. ........+++.++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~ 277 (628)
T TIGR02316 198 GLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVM 277 (628)
T ss_pred CCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEE
Confidence 1000 00000000000 0011123568999999999999999999999999764 34445566788899999
Q ss_pred EEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 215 l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
++..|++|..++...++.+|..|+++++.+. +++..+++. ++++++|+++.+|++++.+.+....
T Consensus 278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~- 346 (628)
T TIGR02316 278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI----------VERYGVRTMFSAPTAIRVLKKQDAA- 346 (628)
T ss_pred EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc-
Confidence 9999999999987778999999999999873 467888888 8899999999999999988765211
Q ss_pred hHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 291 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.....++++||.+++||+++++++.+++++.+|.++++.||+||+|..++.
T Consensus 347 -----~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~ 397 (628)
T TIGR02316 347 -----WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLA 397 (628)
T ss_pred -----ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeec
Confidence 123356889999999999999999999999899999999999999865443
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.49 Aligned_cols=310 Identities=23% Similarity=0.320 Sum_probs=247.8
Q ss_pred hHHHHHHHcCCCCCCceEEee--------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i 73 (359)
++.+.|.+.++.+|+++|+++ ..+++||+||.+++.++|+.|.+ +|+++||+|++
T Consensus 26 t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-----------------~Gi~~gd~V~i 88 (632)
T PRK07529 26 STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-----------------LGVGPGDVVAF 88 (632)
T ss_pred CHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence 678999999999999999986 34799999999999999999999 79999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhcCC-ce-eccCCC
Q 018211 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KF-SLIPPV 146 (359)
Q Consensus 74 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~-~~~~~~ 146 (359)
+++|++++++++|||+++| +++|+++.++.+++.+++++++++++|++... .+.+.......+. +. +.++..
T Consensus 89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (632)
T PRK07529 89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA 167 (632)
T ss_pred ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence 9999999999999999999 56999999999999999999999999997643 2223222222211 11 111111
Q ss_pred CCCC-------------------Ccccccccchh---hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH
Q 018211 147 PNVS-------------------SETTVFDQSQA---EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204 (359)
Q Consensus 147 ~~~~-------------------~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~ 204 (359)
.... ........... .......++++++|+|||||||.||+|.+||++++.+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~ 247 (632)
T PRK07529 168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL 247 (632)
T ss_pred ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence 1000 00000000000 0112235689999999999999999999999999998877777
Q ss_pred hhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC--CC----hhHHHHHHHhhcCCCCCCCCCcceeeecchH
Q 018211 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK--FS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (359)
Q Consensus 205 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~--~~----~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 278 (359)
.+++.++|++++.+|++|..+.+..++.++..|+++++.+. +. ...+++. ++++++|++.++|+
T Consensus 248 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~ 317 (632)
T PRK07529 248 LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKI----------VERYRINFLSGVPT 317 (632)
T ss_pred hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHH----------HHHhCCeEEEeHHH
Confidence 88889999999999999999998888999999999999863 22 2456676 88899999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++..+.+... ...++++||.+++||+++++++.++|++.+|+++++.||+||++.+++.++
T Consensus 318 ~~~~l~~~~~---------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~ 378 (632)
T PRK07529 318 VYAALLQVPV---------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNP 378 (632)
T ss_pred HHHHHHhCcc---------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCC
Confidence 9999987521 123678999999999999999999999999999999999999987765544
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=340.09 Aligned_cols=312 Identities=17% Similarity=0.227 Sum_probs=242.3
Q ss_pred hHH-HHHHHcCC-CCCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEE
Q 018211 2 EVF-KAAYKKGS-MARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73 (359)
Q Consensus 2 ~i~-~~l~~~a~-~~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i 73 (359)
|+. +.|.++++ .+|+++|+++. .+++||+||.++++++|+.|++ +|+++||+|++
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i 150 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-----------------VGVKKGDAVVI 150 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence 443 44555554 58999999873 3689999999999999999999 79999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHH---------HHHHHhhhcC---C--c
Q 018211 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE---------VLQNVASKSG---A--K 139 (359)
Q Consensus 74 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~---~--~ 139 (359)
+++|++++++++|||+++|++++|+++.++.+++..++++++++++|++..... .+........ . .
T Consensus 151 ~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
T PLN02654 151 YLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVG 230 (666)
T ss_pred EcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCcc
Confidence 999999999999999999999999999999999999999999999999865321 1211111100 0 0
Q ss_pred -eeccCCCCCC-------CC-----cccccccch-hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH-HHHHHHH
Q 018211 140 -FSLIPPVPNV-------SS-----ETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTE 204 (359)
Q Consensus 140 -~~~~~~~~~~-------~~-----~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~ 204 (359)
.......... .. ..+...... ........++|+++|+|||||||.||||+++|.+++. .......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~ 310 (666)
T PLN02654 231 ICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY 310 (666)
T ss_pred EEEEecccccccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHH
Confidence 0010100000 00 000000000 0011124578999999999999999999999999864 4455566
Q ss_pred hhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHH
Q 018211 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280 (359)
Q Consensus 205 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~ 280 (359)
.++++++|++++..|++|.+++.+.++.+|+.|+++++.+. +++..+++. ++++++|++..+|+++
T Consensus 311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~ 380 (666)
T PLN02654 311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDI----------VDKYKVTIFYTAPTLV 380 (666)
T ss_pred hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHH
Confidence 78899999999999999999987778899999999999874 578889998 8899999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccc
Q 018211 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~ 346 (359)
+.+.+.... .....++++||.++++|+++++++.+++.+.+| +++.+.||+||+|+....
T Consensus 381 ~~l~~~~~~------~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~ 443 (666)
T PLN02654 381 RSLMRDGDE------YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT 443 (666)
T ss_pred HHHHhhCcc------ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeec
Confidence 999875321 122356789999999999999999999999997 789999999999976543
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=331.84 Aligned_cols=311 Identities=15% Similarity=0.203 Sum_probs=253.8
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++.+|+++|+.+.++++||+||.++++++|+.|.+ +|+++|++|+++++|++++
T Consensus 44 ~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~-----------------~g~~~g~~V~i~~~n~~~~ 106 (537)
T PRK13382 44 GPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQA-----------------LPIGEPRVVGIMCRNHRGF 106 (537)
T ss_pred CHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEecCcHHH
Confidence 57788999999999999999988999999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-c-eeccCCCCCCCCcccccccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPVPNVSSETTVFDQS 159 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 159 (359)
+++++|++++|++++|+++.++.+++.+++++++++++|++.+....+......... . ...+................
T Consensus 107 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T PRK13382 107 VEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAH 186 (537)
T ss_pred HHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhcc
Confidence 999999999999999999999999999999999999999998766555443221111 1 11111100000000010000
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
. .......+++.++++|||||||.||||.++|.+++.........+....+|+++...|++|..++. .++.++..|++
T Consensus 187 ~-~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~ 264 (537)
T PRK13382 187 A-GQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFS-QLVLAASLACT 264 (537)
T ss_pred C-cCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHH-HHHHHHhcCcE
Confidence 0 011122457889999999999999999999999988888777778888999999999999999984 68888999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.++++.+++. ++++++|++.++|++++.+++.... .....+++++|.+++||+++++++
T Consensus 265 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~l~~~~ 328 (537)
T PRK13382 265 IVTRRRFDPEATLDL----------IDRHRATGLAVVPVMFDRIMDLPAE------VRNRYSGRSLRFAAASGSRMRPDV 328 (537)
T ss_pred EEECCCcCHHHHHHH----------HHHhCCEEEEehHHHHHHHHcCCch------hcccCCccceeEEEEcCCCCCHHH
Confidence 999999999999998 8889999999999999998775211 111234678999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCccccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+.|.+.+|.++++.||+||++.++..+
T Consensus 329 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 356 (537)
T PRK13382 329 VIAFMDQFGDVIYNNYNATEAGMIATAT 356 (537)
T ss_pred HHHHHHHcCCcEEecccccccCcceecC
Confidence 9999999999999999999999876544
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=330.62 Aligned_cols=314 Identities=26% Similarity=0.382 Sum_probs=262.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|+.++++++||+||++++.++|..|.+ .|+++||+|+++++|+++
T Consensus 5 ~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~g~~V~l~~~~~~~ 67 (513)
T PRK07656 5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAA-----------------LGIGKGDRVAIWAPNSPH 67 (513)
T ss_pred ccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence 468899999999999999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCCCC-------Cc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVS-------SE 152 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~ 152 (359)
++++++||+++|++++|+++..+.+++..+++++++++++++................ ...++....... ..
T Consensus 68 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (513)
T PRK07656 68 WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTF 147 (513)
T ss_pred HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccH
Confidence 9999999999999999999999999999999999999999988766555443322221 111111111000 00
Q ss_pred ccccccch-hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHH
Q 018211 153 TTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL 231 (359)
Q Consensus 153 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 231 (359)
........ .........+++++|+|||||||.||+|.++|.++...+......++..++|++++..|++|.+++...++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (513)
T PRK07656 148 TDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN 227 (513)
T ss_pred HHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence 11111000 11223346689999999999999999999999999998888888889999999999999999999988889
Q ss_pred HhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
.++..|+++++.+.+++..+++. ++++++|++.++|.++..+.+..... ...++++|.+++|
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~--------~~~~~~l~~v~~~ 289 (513)
T PRK07656 228 APLMRGATILPLPVFDPDEVFRL----------IETERITVLPGPPTMYNSLLQHPDRS--------AEDLSSLRLAVTG 289 (513)
T ss_pred HHHHcCceEEecCcCCHHHHHHH----------HHHhCCeEEechHHHHHHHHcCCCcC--------CCCccceeeEEec
Confidence 99999999999988899999999 88899999999999999998864321 2356889999999
Q ss_pred CCCCCHHHHHHHHHHhCC-cccccccCCcCccccccccc
Q 018211 312 SSALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~~~ 349 (359)
|+++++++.++|.+.++. ++++.||+||+|++++.+..
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~ 328 (513)
T PRK07656 290 AASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRL 328 (513)
T ss_pred CCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCc
Confidence 999999999999999998 99999999999888776554
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=341.17 Aligned_cols=318 Identities=21% Similarity=0.272 Sum_probs=241.0
Q ss_pred hHHHHHHHcCCCCCCceEEee------------CC-----------ccccHHHHHHHHHHHHHHHhhCCCCCcccccccc
Q 018211 2 EVFKAAYKKGSMARDSVAIRA------------DQ-----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE 58 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~ 58 (359)
|+.+.|.+.++.+|+++|+.+ ++ +.+||+|+.++++++|+.|.+
T Consensus 59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~------------- 125 (696)
T PLN02387 59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA------------- 125 (696)
T ss_pred CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-------------
Confidence 678899999999999999942 11 248999999999999999999
Q ss_pred ccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC
Q 018211 59 NSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA 138 (359)
Q Consensus 59 ~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~ 138 (359)
+|+++||+|+|+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.
T Consensus 126 ----lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~ 201 (696)
T PLN02387 126 ----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET 201 (696)
T ss_pred ----hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC
Confidence 7999999999999999999999999999999999999999999999999999999999998776666555443332
Q ss_pred c--eeccCCCCCCCC-------------ccccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH
Q 018211 139 K--FSLIPPVPNVSS-------------ETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM 201 (359)
Q Consensus 139 ~--~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~ 201 (359)
. ++.++....... ..++... ..........++|+++|+|||||||.||||++||++++.++..
T Consensus 202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~ 281 (696)
T PLN02387 202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG 281 (696)
T ss_pred ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHH
Confidence 1 222222110000 0000000 0001112345799999999999999999999999999998877
Q ss_pred HHHhh-ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCCh--------hHHHHHHHhhcCCCCCCCCCccee
Q 018211 202 LTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV--------RGIWQRWRESYPVNGNRAGEAITA 272 (359)
Q Consensus 202 ~~~~~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~vt~ 272 (359)
....+ ++.++|++++++|++|.+++.. .+.++..|+++.+...... ..++.. ++++++|+
T Consensus 282 ~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~----------i~~~~pT~ 350 (696)
T PLN02387 282 VMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGD----------ASALKPTL 350 (696)
T ss_pred HHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhh----------HHHhCCcE
Confidence 66553 5788999999999999999865 4445777888776543211 223344 77899999
Q ss_pred eecchHHHHHHHhhhhhhhH---------------------------------------HHHHHHHhhhccceEEEecCC
Q 018211 273 FTGVPTMYTRLIQGYEAMDT---------------------------------------ELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 273 ~~~~P~~~~~l~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+.++|.+++.+.+....... ...+.+....+++|.+++||+
T Consensus 351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa 430 (696)
T PLN02387 351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA 430 (696)
T ss_pred EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence 99999999999865321100 001111222378999999999
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
++++++.+.+...+|++++++||+||+++.++..
T Consensus 431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~ 464 (696)
T PLN02387 431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFS 464 (696)
T ss_pred CCCHHHHHHHHHHcCCCeeEeechhhcccceeec
Confidence 9999998888877899999999999998765544
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=326.89 Aligned_cols=307 Identities=28% Similarity=0.443 Sum_probs=238.3
Q ss_pred HHHcCCCCCCceEEee-CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHH
Q 018211 7 AYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85 (359)
Q Consensus 7 l~~~a~~~p~~~ai~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (359)
+.++|+.+||++|+++ .++++||+||.++++++|..|.+ +|+++|++|+++++|++++++++
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~-----------------~g~~~~~~V~i~~~n~~~~~~~~ 63 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRK-----------------LGVKKGDRVAILLPNSIEFVVAF 63 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHH-----------------TTSSTTSEEEEEESSSHHHHHHH
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHH-----------------hCCCccccccccCCccceeeeee
Confidence 5678899999999999 99999999999999999999998 79999999999999999999999
Q ss_pred HHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEe----ccccHHHHHHHhhhcC-Cc-eeccCCCCCCCCcccccccc
Q 018211 86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS----TEDYREVLQNVASKSG-AK-FSLIPPVPNVSSETTVFDQS 159 (359)
Q Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 159 (359)
+||+++|++++|+++.++.+++.++++.++++++|+ +......+........ .. ...++.... ..........
T Consensus 64 ~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 142 (417)
T PF00501_consen 64 LACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDL-PKKEALKSAS 142 (417)
T ss_dssp HHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSC-TTCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccc-cccccccccc
Confidence 999999999999999999999999999999999996 3322233333332211 11 222221111 1111110000
Q ss_pred hhhhcCC--CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH--HhhccCCCceEEEecCchhhHHHHHHHHHhhh
Q 018211 160 QAEKMDG--QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235 (359)
Q Consensus 160 ~~~~~~~--~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~ 235 (359)
....... ..++++++++|||||||.||+|.++|++++..+..+. ..++++ |++++.+|++|.++++..++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~ 220 (417)
T PF00501_consen 143 LSDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALF 220 (417)
T ss_dssp HCHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHH
T ss_pred cccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccc
Confidence 0000000 1569999999999999999999999999999887754 223333 699999999999999678999999
Q ss_pred cCcEEEEcCCCCh---hHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 236 AGATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 236 ~G~~i~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
.|+++++++.+.. +.+++. ++++++|++.++|.++..++++.+. .. .....++++||.++++|
T Consensus 221 ~G~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~~~-~~---~~~~~~l~~lr~v~~~G 286 (417)
T PF00501_consen 221 SGATLVLPSPFDLFDPESLLEL----------ISRYKPTILFAVPSMLEALLQSPEE-KT---KISKKDLSSLRTVISGG 286 (417)
T ss_dssp CTSEEEEESSHHHHHHHHHHHH----------HHHHTESEEEEEHHHHHHHHHHHHT-TH---HGTTTTGTT-SEEEEES
T ss_pred ccccccccccccccccccchhc----------ccccccccccccccccccccccccc-cc---ccccccccccccccccc
Confidence 9999999997654 556777 7889999999999999999874211 10 11234788899999999
Q ss_pred CCCCHHHHHHHHHHhCC-cccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.+++++.++. ++++.||+||++++++..
T Consensus 287 ~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 322 (417)
T PF00501_consen 287 EPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIR 322 (417)
T ss_dssp ST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEE
T ss_pred ccCChhhccccccccccccceecccccccceeeecc
Confidence 99999999999999987 999999999999988755
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=335.07 Aligned_cols=311 Identities=19% Similarity=0.241 Sum_probs=243.8
Q ss_pred HHHHHHcCCCCCCceEEeeCC------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
.+.|.++++.+|+++|+++.+ +++||+||.+++.++|+.|.+ +|+++||+|+++++|
T Consensus 60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n 122 (625)
T TIGR02188 60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-----------------LGVKKGDRVAIYMPM 122 (625)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence 445667788899999998643 589999999999999999999 799999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcC--Cc-eeccCC
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG--AK-FSLIPP 145 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~--~~-~~~~~~ 145 (359)
+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+.....+ .. ...+..
T Consensus 123 ~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (625)
T TIGR02188 123 IPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRR 202 (625)
T ss_pred CHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcC
Confidence 999999999999999999999999999999999999999999997643 222333222222 11 122111
Q ss_pred CCCC---C-----Ccccccccc-hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH-HHHhhccCCCceEE
Q 018211 146 VPNV---S-----SETTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFL 215 (359)
Q Consensus 146 ~~~~---~-----~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l 215 (359)
.... . ...+..... .........++++++|+|||||||.||||+++|.+++..... ....+++.++|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~ 282 (625)
T TIGR02188 203 TGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFW 282 (625)
T ss_pred CCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEE
Confidence 1100 0 000000000 011122345689999999999999999999999998755433 34456888999999
Q ss_pred EecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhh
Q 018211 216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291 (359)
Q Consensus 216 ~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 291 (359)
+..|++|..+..+.++.+|..|+++++.+. +++..+++. ++++++|++..+|++++.+.+....
T Consensus 283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-- 350 (625)
T TIGR02188 283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI----------IEKHKVTIFYTAPTAIRALMRLGDE-- 350 (625)
T ss_pred ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc--
Confidence 999999999887778899999999999763 478899998 8899999999999999999875321
Q ss_pred HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCccccccc
Q 018211 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 292 ~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~ 347 (359)
.....++++||.++++|+++++++.+++.+.++ +++++.||+||+|+.++..
T Consensus 351 ----~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 405 (625)
T TIGR02188 351 ----WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405 (625)
T ss_pred ----ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeec
Confidence 122356889999999999999999999999885 7999999999999875544
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=334.03 Aligned_cols=315 Identities=19% Similarity=0.202 Sum_probs=239.3
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
++.+.|.++++.+|+++|+++.+ +.+||+||.++++++|..|.+ +|+++||+|++++
T Consensus 50 ~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~ 112 (624)
T PRK12582 50 SIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD-----------------LGLDPGRPVMILS 112 (624)
T ss_pred CHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEec
Confidence 67889999999999999998743 689999999999999999998 6999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCH-----HHHHHHHhhCCceEEEecccc--HHHHHHHhhhcCCceeccCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPE-----SELLHVMHDSDISMVLSTEDY--REVLQNVASKSGAKFSLIPPVPN 148 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
+|+++|+++++||+++|++++|+++.++. +++.++++.++++++|++... ...+.... ........+.....
T Consensus 113 ~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 191 (624)
T PRK12582 113 GNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALD-LLDVTVVHVTGPGE 191 (624)
T ss_pred CCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhh-hcCceEEEEcCCCc
Confidence 99999999999999999999999999885 899999999999999998642 12222211 11122222211110
Q ss_pred C---CCcccccccch----hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCC---CceEEEec
Q 018211 149 V---SSETTVFDQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS---ADQFLHCL 218 (359)
Q Consensus 149 ~---~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~d~~l~~~ 218 (359)
. ........... ........++++++|+|||||||.||||++||++++.+.......+.... .++++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 271 (624)
T PRK12582 192 GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWM 271 (624)
T ss_pred ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEec
Confidence 0 00000100000 01112345689999999999999999999999999987766555444443 58999999
Q ss_pred CchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 219 PLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 219 pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
|++|.+++...++.++..|+++++.+. +++..+.+.+.. ++++++|++.++|.++..+.+..... ...
T Consensus 272 Pl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~-------i~~~~~t~~~~vP~~~~~l~~~~~~~----~~~ 340 (624)
T PRK12582 272 PWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRN-------LREISPTVYGNVPAGYAMLAEAMEKD----DAL 340 (624)
T ss_pred hHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHH-------HHhcCCeEEeccCHHHHHHHHHHhhC----HHH
Confidence 999999987777888999999999763 444433333222 78899999999999999887642211 122
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHh------CCcccccccCCcCccccc
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~------~~~v~~~YG~TE~g~~~~ 345 (359)
...++++||.+++||+++++++.++|.+.+ ++++++.||+||+++++.
T Consensus 341 ~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~ 394 (624)
T PRK12582 341 RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT 394 (624)
T ss_pred HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceee
Confidence 345678999999999999999999998863 368999999999987665
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=324.14 Aligned_cols=303 Identities=24% Similarity=0.349 Sum_probs=254.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.++|.+.|+.+|+++|+.++++.+||.||.++++++|..|.++ .|+.+|++|+++++|++++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~----------------~g~~~~~~V~i~~~~~~~~ 66 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYE----------------LNVKKGERIAILSQNSLEY 66 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence 467899999999999999999999999999999999999999753 5999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCCCCCcccccccch
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|++++|++++|+++..+.+++..+++.+++++++++++..+.+......... ....+..... .... .
T Consensus 67 ~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~ 139 (496)
T PRK06839 67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKE------IEDR-K 139 (496)
T ss_pred HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHh------hhcc-C
Confidence 999999999999999999999999999999999999999998776666554433221 1111111110 0000 0
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++|+|||||||.||+|.++|.++..........+++..+|+++..+|++|..++...++.++..|+++
T Consensus 140 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~ 219 (496)
T PRK06839 140 IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVI 219 (496)
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEE
Confidence 11122345588999999999999999999999999877776677778889999999999999999877678899999999
Q ss_pred EEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHH
Q 018211 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (359)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~ 320 (359)
++.+.++++.+++. ++++++|++.++|.+++.++.... ....+++++|.+++||+++++++.
T Consensus 220 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~ 281 (496)
T PRK06839 220 IVPRKFEPTKALSM----------IEKHKVTVVMGVPTIHQALINCSK--------FETTNLQSVRWFYNGGAPCPEELM 281 (496)
T ss_pred EEccCCCHHHHHHH----------HHhhCCeEEEehHHHHHHHHhCcc--------cccCCCcccceEEECCCCCCHHHH
Confidence 99999999999998 889999999999999999987632 122457899999999999999999
Q ss_pred HHHHHHhCCcccccccCCcCcccccc
Q 018211 321 QQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 321 ~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+.+.+. |+++++.||+||++.++..
T Consensus 282 ~~~~~~-g~~~~~~YG~tE~~~~~~~ 306 (496)
T PRK06839 282 REFIDR-GFLFGQGFGMTETSPTVFM 306 (496)
T ss_pred HHHHHh-CCeeEeeccCCCCCcceEe
Confidence 999886 9999999999999975543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=328.28 Aligned_cols=311 Identities=21% Similarity=0.300 Sum_probs=254.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
||+.+.+.++++.+|+++|+++. ++++||.||.++++++|+.|.+ .|+++||+|+++++|+
T Consensus 23 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~gd~V~i~~~~~ 85 (537)
T PLN02246 23 LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-----------------LGIRQGDVVMLLLPNC 85 (537)
T ss_pred CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCC
Confidence 57889999999999999999875 4789999999999999999998 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC-CCCcccccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETTVFD 157 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (359)
++++++++|++++|++++|+++.++.+++..+++.+++++++++....+.+...........+.++.... .........
T Consensus 86 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (537)
T PLN02246 86 PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQ 165 (537)
T ss_pred hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhc
Confidence 9999999999999999999999999999999999999999999987766665543322222222221110 000000000
Q ss_pred cc-hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 158 QS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 158 ~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
.. .........++++++++|||||||.||||.++|+++......... .+++..+|+++..+|++|.+++...++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 245 (537)
T PLN02246 166 ADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLC 245 (537)
T ss_pred CCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHH
Confidence 00 001112345689999999999999999999999999887665433 4678899999999999999998777888
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
++..|+++++.+.+++..+++. ++++++|++.++|.++..+.+... .....++++|.+++||
T Consensus 246 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~gg 307 (537)
T PLN02246 246 GLRVGAAILIMPKFEIGALLEL----------IQRHKVTIAPFVPPIVLAIAKSPV--------VEKYDLSSIRMVLSGA 307 (537)
T ss_pred HHhcCCEEEEeCCCCHHHHHHH----------HHHhCceEEEcchHHHHHHhcCcc--------ccccCccceeEEEEec
Confidence 9999999999999999999998 889999999999999999877532 1223567899999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 313 SALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
+++++++.+.+++.+ +..+++.||+||++++++.
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 342 (537)
T PLN02246 308 APLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAM 342 (537)
T ss_pred CcCCHHHHHHHHHHcCCCeEeccccccccCccccc
Confidence 999999999999988 7889999999999876544
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=336.50 Aligned_cols=321 Identities=21% Similarity=0.302 Sum_probs=238.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeC---------------------------CccccHHHHHHHHHHHHHHHhhCCCCCcccc
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD---------------------------QKSYSYDQLASSALRISSLLCSNDLKTTSEK 54 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~ 54 (359)
|+.+.|.++++.+|+++|+.+. ++++||+||.++++++|..|.+
T Consensus 70 t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~--------- 140 (700)
T PTZ00216 70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE--------- 140 (700)
T ss_pred CHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH---------
Confidence 5789999999999999999862 4789999999999999999999
Q ss_pred ccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhh
Q 018211 55 TKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134 (359)
Q Consensus 55 ~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 134 (359)
+|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+.....
T Consensus 141 --------~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~ 212 (700)
T PTZ00216 141 --------LGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMK 212 (700)
T ss_pred --------hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhh
Confidence 799999999999999999999999999999999999999999999999999999999998765544433222
Q ss_pred h--cC-CceeccCCCCCCC--------Ccccccc-----cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHH
Q 018211 135 K--SG-AKFSLIPPVPNVS--------SETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ 198 (359)
Q Consensus 135 ~--~~-~~~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~ 198 (359)
. .+ ..++.++...... ...+... ...........++|+++|+|||||||.||||++||+++++.
T Consensus 213 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 213 SGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred hccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 1 11 1222222211100 0000000 00011122345789999999999999999999999999998
Q ss_pred HHHHHHhh----c-cCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceee
Q 018211 199 VQMLTEAW----E-YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273 (359)
Q Consensus 199 ~~~~~~~~----~-~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~ 273 (359)
+......+ + ..++|++++++|++|.+++.. ....+..|+++++. ++..+++.+.. ....+.++++|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~---~~~~l~~~~pT~~ 365 (700)
T PTZ00216 293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFAR---PHGDLTEFRPVFL 365 (700)
T ss_pred HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhcc---ccchHHHcCCcEE
Confidence 77665443 2 367899999999999999854 45557888888763 34444442110 0112778999999
Q ss_pred ecchHHHHHHHhhhhhhhHH---------------------------------HHHHHHhhhccceEEEecCCCCCHHHH
Q 018211 274 TGVPTMYTRLIQGYEAMDTE---------------------------------LQAASASAAKQLRLMMCGSSALPLPVM 320 (359)
Q Consensus 274 ~~~P~~~~~l~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~i~~~G~~l~~~~~ 320 (359)
.++|.+++.+.+........ ....+....+++|.+++||+++++++.
T Consensus 366 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~ 445 (700)
T PTZ00216 366 IGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQ 445 (700)
T ss_pred EechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence 99999999987653211000 001112223789999999999999999
Q ss_pred HHHHHHhCCcccccccCCcCccccccc
Q 018211 321 QQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 321 ~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
++++..++ +++++||+||+++.++..
T Consensus 446 ~~~~~~~~-~l~~~YG~TEt~~~~~~~ 471 (700)
T PTZ00216 446 EFVNVVFG-MVIQGWGLTETVCCGGIQ 471 (700)
T ss_pred HHHHHHhh-hHhhccCccccccccccc
Confidence 88887778 999999999998765543
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=318.33 Aligned_cols=321 Identities=23% Similarity=0.317 Sum_probs=250.8
Q ss_pred ChHHHHHHHcCCCCCCceEEee--------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
+|+++.+.+.+..+|+.+++-. ..+++||+|..+++..++..|.. +|+++++.||
T Consensus 75 ~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-----------------lG~~~~~~VG 137 (691)
T KOG1256|consen 75 LTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-----------------LGVKEDSKVG 137 (691)
T ss_pred ccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCceEE
Confidence 4788999999999999999964 24799999999999999999998 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEec-cccHHHHHHHhhh--cC-Cceecc-CCCC
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYREVLQNVASK--SG-AKFSLI-PPVP 147 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~-~~~~~~-~~~~ 147 (359)
|+..|++||++++.||...|++.||++.+++++.+.+|++.+...++|+| +...+.+.+.... .+ .+.++. ....
T Consensus 138 Iy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~ 217 (691)
T KOG1256|consen 138 IYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPS 217 (691)
T ss_pred EeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999 4555555554442 22 222222 1111
Q ss_pred C------------CCCcccccccc--hhhhc-CCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH---HHHh---h
Q 018211 148 N------------VSSETTVFDQS--QAEKM-DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEA---W 206 (359)
Q Consensus 148 ~------------~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~---~ 206 (359)
. +.++.++.+.. ..... ....++|.+.|+|||||||.||||++||+|++..+.. .... .
T Consensus 218 ~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~ 297 (691)
T KOG1256|consen 218 DELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAK 297 (691)
T ss_pred hhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhccccc
Confidence 0 11111111111 11122 4678899999999999999999999999999996543 1111 1
Q ss_pred ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhh
Q 018211 207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286 (359)
Q Consensus 207 ~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 286 (359)
....+|++++++||+|++.++...+ .++.|+.+.+.+. |+..+.++ +++.+||.+.++|.+++++...
T Consensus 298 ~~~~~dv~lSyLPLAHi~er~~~~~-~~~~G~~IgF~~g-D~~~l~~d----------lk~lkPT~f~~VPRVl~riye~ 365 (691)
T KOG1256|consen 298 ATVGDDVYLSYLPLAHIFERVVELY-TFYIGAKIGFARG-DILKLTDD----------LKELKPTVFPGVPRVLERIYEG 365 (691)
T ss_pred ccccCceEEEeCcHHHHHHHHHHHh-HhhcccEEEEecC-ChHHHHHH----------HHHhCCcEEeccHhHHHHHHHH
Confidence 2334799999999999999986544 4799999999986 88888787 7788999999999999999876
Q ss_pred hhhhh----------------H---------------------HHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC
Q 018211 287 YEAMD----------------T---------------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329 (359)
Q Consensus 287 ~~~~~----------------~---------------------~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 329 (359)
.++.- . .+.+.+....+++|.+++|++|+++++.+.++..+|+
T Consensus 366 I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~ 445 (691)
T KOG1256|consen 366 IQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC 445 (691)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc
Confidence 43210 0 0112334456889999999999999999999999899
Q ss_pred cccccccCCcCcccccccccc
Q 018211 330 RLLERYGMTEGCTKGRHCWQS 350 (359)
Q Consensus 330 ~v~~~YG~TE~g~~~~~~~~~ 350 (359)
+|+++||+|||++.++...+.
T Consensus 446 ~v~eGYGlTEts~g~~~~~~~ 466 (691)
T KOG1256|consen 446 RVLEGYGLTETSAGTTLTLPG 466 (691)
T ss_pred eeeecccccccCCceEeccCC
Confidence 999999999999655544443
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=329.28 Aligned_cols=314 Identities=22% Similarity=0.277 Sum_probs=252.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.+.++++.+|+++|+.++++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~-----------------~gi~~gd~V~l~~~n~~~ 94 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRA-----------------LGVRPGDRVAIVLPNCPQ 94 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCHH
Confidence 468889999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCcee-ccCCCC------------
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS-LIPPVP------------ 147 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------ 147 (359)
++++++|++++|++++|+++.++.+++.+++++++++++|++......+..+......... .+....
T Consensus 95 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 174 (573)
T PRK05605 95 HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRL 174 (573)
T ss_pred HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccc
Confidence 9999999999999999999999999999999999999999987765555444332221111 110000
Q ss_pred -----------------CCCCcccccccch-h----hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh
Q 018211 148 -----------------NVSSETTVFDQSQ-A----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA 205 (359)
Q Consensus 148 -----------------~~~~~~~~~~~~~-~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~ 205 (359)
............. . ........+++++++|||||||.||+|.++|.++...+......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~ 254 (573)
T PRK05605 175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAW 254 (573)
T ss_pred ccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence 0000000000000 0 11122456899999999999999999999999998877654433
Q ss_pred hc--cCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHH
Q 018211 206 WE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 206 ~~--~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 283 (359)
+. ...++++++.+|++|.+++...++.++..|+++++.+.++++.+++. ++++++|.+.++|.+++.+
T Consensus 255 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l 324 (573)
T PRK05605 255 VPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA----------MKKHPPTWLPGVPPLYEKI 324 (573)
T ss_pred ccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHhCCEEEEchHHHHHHH
Confidence 32 23478999999999999987778888999999999998999999999 8889999999999999999
Q ss_pred HhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccccc
Q 018211 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
.+.... ...+++++|.+++||+++++++.++|.+.++.++++.||+||++++++....
T Consensus 325 ~~~~~~--------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 382 (573)
T PRK05605 325 AEAAEE--------RGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPM 382 (573)
T ss_pred HhCccc--------cCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCc
Confidence 876322 1234678999999999999999999999889999999999999987766543
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=331.88 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=234.7
Q ss_pred HHHHHHcCCC--CCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 4 FKAAYKKGSM--ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 4 ~~~l~~~a~~--~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
.+.|.++++. +|+++|+++. .+++||+||.++++++|+.|++ +|+++||+|++++
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GDrV~i~~ 124 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-----------------LNISKNDNVLIYM 124 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence 3445555543 7999999872 3689999999999999999999 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc---------cHHHHHHHhhhcC---Cceecc
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED---------YREVLQNVASKSG---AKFSLI 143 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~---~~~~~~ 143 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.. ..+.+.+...... ..++.+
T Consensus 125 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 204 (647)
T PTZ00237 125 ANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITL 204 (647)
T ss_pred CCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999752 2223332222111 112211
Q ss_pred CCCC--------------CCCC---ccccccc------chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhH-HHHHH
Q 018211 144 PPVP--------------NVSS---ETTVFDQ------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQV 199 (359)
Q Consensus 144 ~~~~--------------~~~~---~~~~~~~------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~ 199 (359)
.... .... ..+.... ..........++++++|+|||||||.||||+++|.+ +....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~ 284 (647)
T PTZ00237 205 FRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLK 284 (647)
T ss_pred EcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHH
Confidence 1000 0000 0000000 000011234678999999999999999999999998 44433
Q ss_pred HHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC--CC----hhHHHHHHHhhcCCCCCCCCCcceee
Q 018211 200 QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK--FS----VRGIWQRWRESYPVNGNRAGEAITAF 273 (359)
Q Consensus 200 ~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~--~~----~~~~~~~~~~~~~~~~~i~~~~vt~~ 273 (359)
......+....+|++++..|++|..+.. .++.+|+.|+++++.+. +. +..+++. ++++++|++
T Consensus 285 ~~~~~~~~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~----------i~~~~vt~~ 353 (647)
T PTZ00237 285 YYWRSIIEKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNT----------IEKHKVTHT 353 (647)
T ss_pred HHHHHhcCCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHH----------HHHhCeEEE
Confidence 3334455677789999999999987664 58889999999999764 12 5678888 889999999
Q ss_pred ecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 274 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.++|++++.+.+...... ......++++||.+++||+++++++.+++++.+|+++++.||+||+++++..
T Consensus 354 ~~~P~~~~~l~~~~~~~~---~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~ 423 (647)
T PTZ00237 354 LTLPKTIRYLIKTDPEAT---IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLY 423 (647)
T ss_pred EeCHHHHHHHHhhCcccc---ccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhc
Confidence 999999999987421100 0012346889999999999999999999999999999999999999976543
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=304.75 Aligned_cols=309 Identities=21% Similarity=0.232 Sum_probs=260.3
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC--ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.+.++++++|+|+|+++.+ +++||+|+.++++++|+.|+. .|++.||.|+++|+|++
T Consensus 78 ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-----------------~~l~~GD~VAL~men~p 140 (649)
T KOG1179|consen 78 TIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-----------------EGLKAGDVVALLMENRP 140 (649)
T ss_pred cHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-----------------hhcccCCEEEEecCCCh
Confidence 67899999999999999999976 799999999999999999999 68999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCcee---ccCCCCCCCCccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS---LIPPVPNVSSETTVF 156 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 156 (359)
||+..|++++++|++...||+++..+-+.|.++.++++.+|++.+....+.++.+......+ ...........+++.
T Consensus 141 efv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~ 220 (649)
T KOG1179|consen 141 EFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLL 220 (649)
T ss_pred hHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999988887777443332211 111111111111111
Q ss_pred ---ccc-----hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH
Q 018211 157 ---DQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228 (359)
Q Consensus 157 ---~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 228 (359)
+.. +.......+-.++++.+|||||||.||+.+++|..+..........++++++|+++..+|++|..+.+.
T Consensus 221 ~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~il 300 (649)
T KOG1179|consen 221 AKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGIL 300 (649)
T ss_pred HhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHH
Confidence 111 112233445578999999999999999999999999998887888999999999999999999999999
Q ss_pred HHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEE
Q 018211 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (359)
Q Consensus 229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i 308 (359)
++..+|..|+|+++-.+|++..+|++ ..+|++|++.-+--+++.|+..+.+.. ..-+.+|..
T Consensus 301 Gi~~~l~~GaT~VlrkKFSAS~FW~D----------C~k~~~Tv~QYIGElcRYLl~~p~~~~--------er~HkVRla 362 (649)
T KOG1179|consen 301 GIGGCLLHGATVVLRKKFSASNFWDD----------CRKYNVTVIQYIGELCRYLLNQPPSPE--------ERQHKVRLA 362 (649)
T ss_pred HHHHHHhcCceEEEecccchhhhHHH----------HHHhCCeeeehHHHHHHHHHcCCCChh--------hcCceEEEE
Confidence 99999999999999999999999999 788999999999999999999865433 234567776
Q ss_pred EecCCCCCHHHHHHHHHHhCCc-ccccccCCcCccccccc
Q 018211 309 MCGSSALPLPVMQQWETITGHR-LLERYGMTEGCTKGRHC 347 (359)
Q Consensus 309 ~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~TE~g~~~~~~ 347 (359)
+ |.-+.+++++.|.++||++ |.+.||.||......++
T Consensus 363 ~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~ 400 (649)
T KOG1179|consen 363 Y--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY 400 (649)
T ss_pred e--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee
Confidence 6 6678999999999999865 99999999998766555
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=329.51 Aligned_cols=308 Identities=22% Similarity=0.255 Sum_probs=251.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.++++.+|+++|++++++.+||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 37 ~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~gd~V~i~~~n~~~ 99 (600)
T PRK08279 37 RSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAA-----------------RGVGKGDVVALLMENRPE 99 (600)
T ss_pred ccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCHH
Confidence 368899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCC---CCCccccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN---VSSETTVF 156 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~ 156 (359)
++++++||+++|++++++++.++.+++.++++.++++++|++.+..+.+......... .......... .....+..
T Consensus 100 ~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (600)
T PRK08279 100 YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLA 179 (600)
T ss_pred HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHh
Confidence 9999999999999999999999999999999999999999998877766655443222 1111111000 00000000
Q ss_pred ---ccch---hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 157 ---DQSQ---AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 157 ---~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
.... .........+++++|+|||||||.||||.++|.++..++......++++++|++++.+|++|.+++...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~ 259 (600)
T PRK08279 180 AAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW 259 (600)
T ss_pred hhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHH
Confidence 0000 0111233568999999999999999999999999999999888889999999999999999999998778
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEe
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~ 310 (359)
+.++..|+++++.+.+++..+++. ++++++|++.++|.+++.+....... .....++|.+
T Consensus 260 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~l~~~l~~~~~~~--------~~~~~~l~~~-- 319 (600)
T PRK08279 260 SSVLAAGATLALRRKFSASRFWDD----------VRRYRATAFQYIGELCRYLLNQPPKP--------TDRDHRLRLM-- 319 (600)
T ss_pred HHHHhcCcEEEEcCCCCHHHHHHH----------HHHhcceEEeehHHHHHHHHhCCCCc--------cccCcceeEE--
Confidence 888999999999999999999998 88899999999999999887652211 1134567754
Q ss_pred cCCCCCHHHHHHHHHHhCC-cccccccCCcCccccc
Q 018211 311 GSSALPLPVMQQWETITGH-RLLERYGMTEGCTKGR 345 (359)
Q Consensus 311 ~G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~ 345 (359)
+|+.+++++.++|.+.++. .+++.||+||++....
T Consensus 320 ~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 355 (600)
T PRK08279 320 IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI 355 (600)
T ss_pred ecCCCCHHHHHHHHHHhCcceeeeeecccccceeec
Confidence 4778999999999999976 5999999999986433
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=326.51 Aligned_cols=308 Identities=17% Similarity=0.262 Sum_probs=244.2
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.+.++.+|+++|+.+++.++||+||.++++++|..|.+ +|+++||+|+|+++|++++
T Consensus 15 ~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~Gl~~gd~Vai~~~n~~e~ 77 (579)
T PLN03102 15 TPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLIS-----------------LNITKNDVVSVLAPNTPAM 77 (579)
T ss_pred cHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHH
Confidence 46778888999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC-------CceeccCCCCCCC----
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-------AKFSLIPPVPNVS---- 150 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---- 150 (359)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+........ ...+.++......
T Consensus 78 ~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (579)
T PLN03102 78 YEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS 157 (579)
T ss_pred HHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcc
Confidence 99999999999999999999999999999999999999998877666555433211 1222222111000
Q ss_pred ---Ccccccccchh------hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCch
Q 018211 151 ---SETTVFDQSQA------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221 (359)
Q Consensus 151 ---~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~ 221 (359)
...+....... .......++++++|+|||||||.||+|+++|.++..........+.+...+++++.+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 237 (579)
T PLN03102 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF 237 (579)
T ss_pred cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChh
Confidence 00000000000 001123468999999999999999999999999765544444445566778999999999
Q ss_pred hhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhh
Q 018211 222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (359)
Q Consensus 222 h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 301 (359)
|..++. ..+.++..|+++++.+.++++.+++. ++++++|++.++|+++..+.+... .....
T Consensus 238 h~~g~~-~~~~~~~~g~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~ 298 (579)
T PLN03102 238 HCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKN----------IEMHNVTHMCCVPTVFNILLKGNS--------LDLSP 298 (579)
T ss_pred hhcchh-HHHHHHHhcCcEEeeccCChHHHHHH----------HHHcCCeEEEeChHHHHHHHhCcc--------cccCC
Confidence 999985 46778889999999998899999998 889999999999999999987521 11123
Q ss_pred hccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 302 ~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.++++.+++||+++++.+.+++.+ +|.++++.||+||+++.+..
T Consensus 299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~ 342 (579)
T PLN03102 299 RSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLF 342 (579)
T ss_pred cccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccc
Confidence 456788999999999999998875 69999999999999875543
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=327.42 Aligned_cols=307 Identities=22% Similarity=0.245 Sum_probs=246.9
Q ss_pred HHHHHcCC-CCCCceEEeeC----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 5 KAAYKKGS-MARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 5 ~~l~~~a~-~~p~~~ai~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
+.+.++++ .+|+++|+.+. .+.+||+||.++++++|..|.+ +|+++||+|+++++|++
T Consensus 47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 47 EAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDRVFIFMPRIP 109 (570)
T ss_pred HHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCH
Confidence 56677665 57999999874 3689999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC-Cc-eeccCCCCCC----CCcc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AK-FSLIPPVPNV----SSET 153 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~----~~~~ 153 (359)
++++++||++++|++++|+++.++.+++.++++++++++++++.......... ..+ .+ ...+...... ....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD--DLPSLKHVLLVGEDVEEGPGTLDFN 187 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh--cCCCceEEEEECCCcCCCcCccCHH
Confidence 99999999999999999999999999999999999999999987654332211 111 11 1122111100 0000
Q ss_pred ccc-ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 154 TVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
... ............++++++|+|||||||.||||.++|.+++.++......+++.++|++++..|++|..+....++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~ 267 (570)
T PRK04319 188 ALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFA 267 (570)
T ss_pred HHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHH
Confidence 000 0001111223456899999999999999999999999999888877788888999999999999999988778899
Q ss_pred hhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 233 PLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 233 ~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
++..|+++++.. .+++..+++. ++++++|++.++|++++.+.+.... .....++++||.+++|
T Consensus 268 ~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 268 PWLNGATNVIDGGRFSPERWYRI----------LEDYKVTVWYTAPTAIRMLMGAGDD------LVKKYDLSSLRHILSV 331 (570)
T ss_pred HHhcCceEEEECCCCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcCCc------ccccCCcccceEEEEc
Confidence 999999999875 6899999999 8889999999999999999865211 1123457899999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 312 SSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
|+++++++.+++++.+|.++++.||+||+++++..
T Consensus 332 G~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~ 366 (570)
T PRK04319 332 GEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIA 366 (570)
T ss_pred ccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEe
Confidence 99999999999999899999999999999976543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=333.38 Aligned_cols=308 Identities=20% Similarity=0.161 Sum_probs=237.6
Q ss_pred hHHHH-HHHcCCCCCCceEEeeCC--------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKA-AYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~-l~~~a~~~p~~~ai~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
|+.+. |.++...+|+++|+++.+ +++||+||.++++++|+.|++ +|+++||+|+
T Consensus 175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrVa 237 (728)
T PLN03052 175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-----------------LGFEKGDAIA 237 (728)
T ss_pred EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 44443 444445689999999743 379999999999999999999 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH------HHHHHHhhhcCCceeccCCC
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR------EVLQNVASKSGAKFSLIPPV 146 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~ 146 (359)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +....+.+......+++...
T Consensus 238 i~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~ 317 (728)
T PLN03052 238 IDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPAD 317 (728)
T ss_pred EEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999976432 11222211111122222110
Q ss_pred CC---------CCCcccccccc-----hhhh-cCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCC
Q 018211 147 PN---------VSSETTVFDQS-----QAEK-MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA 211 (359)
Q Consensus 147 ~~---------~~~~~~~~~~~-----~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~ 211 (359)
.. .....+..... .... ......+++++|+|||||||.||||+++|.+++.........+++.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~ 397 (728)
T PLN03052 318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG 397 (728)
T ss_pred CCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence 00 00011110000 0000 111245899999999999999999999999988776655556788899
Q ss_pred ceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 212 d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
|++++..|++|+++.+ .++.+|..|+++++.+. +++..+++. ++++++|++..+|++++.+.+...
T Consensus 398 d~~~~~~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~----------i~~~~vT~l~~~Pt~l~~l~~~~~-- 464 (728)
T PLN03052 398 DIVCWPTNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKF----------VQDAKVTMLGTVPSIVKTWKNTNC-- 464 (728)
T ss_pred cEEEECCCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHH----------HHHHCCCEEEECHHHHHHHHhcCC--
Confidence 9999999999999985 57899999999999874 466778888 888999999999999999876521
Q ss_pred hHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC-CcccccccCCcCccccc
Q 018211 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGCTKGR 345 (359)
Q Consensus 291 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~TE~g~~~~ 345 (359)
....++++||.++++|++++++..+++.+.++ .++++.||+||+++.+.
T Consensus 465 ------~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 514 (728)
T PLN03052 465 ------MAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFV 514 (728)
T ss_pred ------cccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccc
Confidence 12357889999999999999999888888776 58999999999987543
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=319.44 Aligned_cols=295 Identities=24% Similarity=0.342 Sum_probs=248.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+.+.++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~~~~v~i~~~~~~~ 64 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAA-----------------LGVKKGDRVALLMKNGME 64 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 789999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++||++++|++++|+++..+.+++..+++++++++++++............. .+..... . ....
T Consensus 65 ~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~---~----~~~~ 131 (483)
T PRK03640 65 MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISV------KFAELMN---G----PKEE 131 (483)
T ss_pred HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhccc------cHHHHhh---c----cccc
Confidence 9999999999999999999999999999999999999999987655443322100 0000000 0 0000
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++++|||||||.||+|.++|.++...+......++.+++|++++.+|++|..++. .++.++..|+++
T Consensus 132 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~ 210 (483)
T PRK03640 132 AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRV 210 (483)
T ss_pred CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEE
Confidence 1111223568999999999999999999999999988877777778899999999999999999985 478889999999
Q ss_pred EEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHH
Q 018211 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (359)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~ 320 (359)
++.+.+++..+++. ++++++|++.++|+++..+.+..... ....++|.+++||+++++.+.
T Consensus 211 ~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~~~lr~~~~~g~~~~~~~~ 271 (483)
T PRK03640 211 VLVEKFDAEKINKL----------LQTGGVTIISVVSTMLQRLLERLGEG---------TYPSSFRCMLLGGGPAPKPLL 271 (483)
T ss_pred EecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcCcc---------ccCCcceEEEEcCCCCCHHHH
Confidence 99999999999998 88899999999999999998652210 223689999999999999999
Q ss_pred HHHHHHhCCcccccccCCcCcccccc
Q 018211 321 QQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 321 ~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+.+.+ +|+++++.||+||+|..++.
T Consensus 272 ~~~~~-~~~~~~~~YG~tE~~~~~~~ 296 (483)
T PRK03640 272 EQCKE-KGIPVYQSYGMTETASQIVT 296 (483)
T ss_pred HHHHH-hCCCeeeeeccCcccccccc
Confidence 98887 49999999999999865443
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=330.36 Aligned_cols=317 Identities=20% Similarity=0.267 Sum_probs=236.2
Q ss_pred hHHHHHHHcCCCCCCceEEeeC----C-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~----~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
|+.+.+.+.++.+|+++|+... + +++||+|+.++++++|+.|.+ .|+++||+|+
T Consensus 43 t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~V~ 105 (660)
T PLN02430 43 TAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-----------------SGAEPGSRVG 105 (660)
T ss_pred CHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 6788999999999999999631 1 357999999999999999999 7999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-HHHHHHhhhcC-Cc-eeccCCCCCC
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-EVLQNVASKSG-AK-FSLIPPVPNV 149 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~ 149 (359)
|+++|++||+++++||+++|+++||+++.++.+++.++++.++++++|++.... +.+.......+ .. ++.+......
T Consensus 106 i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 185 (660)
T PLN02430 106 IYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEE 185 (660)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChH
Confidence 999999999999999999999999999999999999999999999999986532 22222111111 11 1122111100
Q ss_pred ------------CCcccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh-----ccCC
Q 018211 150 ------------SSETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTS 210 (359)
Q Consensus 150 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~ 210 (359)
....++..... ........++|+++|+|||||||.||||++||+++..++....... ++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~ 265 (660)
T PLN02430 186 ESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH 265 (660)
T ss_pred HhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCC
Confidence 00000000000 0111233578999999999999999999999999998776654321 4678
Q ss_pred CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 211 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
+|++++++|++|.+++.. .+.++..|+++++... ++..+++. +.++++|++.++|.+++.+.+.....
T Consensus 266 ~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~----------l~~~~pt~~~~vP~~~~~l~~~i~~~ 333 (660)
T PLN02430 266 DDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDD----------LMELKPTLLAGVPRVFERIHEGIQKA 333 (660)
T ss_pred CCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHH----------HHHhCCcEEEecHHHHHHHHHHHHHH
Confidence 999999999999999875 4556899999988764 67788888 78899999999999999887642210
Q ss_pred h-------------------------------------HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccc
Q 018211 291 D-------------------------------------TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333 (359)
Q Consensus 291 ~-------------------------------------~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~ 333 (359)
. ....+.+....++||.+++||+++++++.+.++...+.++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~ 413 (660)
T PLN02430 334 LQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQ 413 (660)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeee
Confidence 0 001111222337899999999999999866554432478999
Q ss_pred cccCCcCccccccc
Q 018211 334 RYGMTEGCTKGRHC 347 (359)
Q Consensus 334 ~YG~TE~g~~~~~~ 347 (359)
.||+||++++++..
T Consensus 414 ~YG~TE~~~~~~~~ 427 (660)
T PLN02430 414 GYGLTETLGPTTLG 427 (660)
T ss_pred ecchhhhhhceEee
Confidence 99999998866544
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=328.40 Aligned_cols=309 Identities=19% Similarity=0.243 Sum_probs=241.3
Q ss_pred HHHHHcCCCCCCceEEeeCC------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 5 KAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 5 ~~l~~~a~~~p~~~ai~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+.|.++++.+|+++|+++.+ +++||+||.+++.++|..|.+ +|+++||+|+++++|+
T Consensus 71 ~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 133 (637)
T PRK00174 71 NCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-----------------LGVKKGDRVAIYMPMI 133 (637)
T ss_pred HHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCC
Confidence 45667788899999999633 479999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH---------HHHHHHhhhcC-Cc-eeccCCCC
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---------EVLQNVASKSG-AK-FSLIPPVP 147 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~-~~~~~~~~ 147 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+.......+ .. .+......
T Consensus 134 ~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (637)
T PRK00174 134 PEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTG 213 (637)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCC
Confidence 999999999999999999999999999999999999999999876432 22222222111 11 11111110
Q ss_pred C-C--CC-----ccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH-HHHhhccCCCceEEEe
Q 018211 148 N-V--SS-----ETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLHC 217 (359)
Q Consensus 148 ~-~--~~-----~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l~~ 217 (359)
. . .. ..+.... ..........++++++|+|||||||.||||+++|.+++.+... ....+++.++|++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~ 293 (637)
T PRK00174 214 GDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCT 293 (637)
T ss_pred CCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEc
Confidence 0 0 00 0000000 0011122345689999999999999999999999998765443 3445678889999999
Q ss_pred cCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHH
Q 018211 218 LPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293 (359)
Q Consensus 218 ~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 293 (359)
.|++|..++...++.+|..|+++++.+. +++..+++. ++++++|++..+|++++.+.+....
T Consensus 294 ~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~---- 359 (637)
T PRK00174 294 ADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV----------IDKHKVTIFYTAPTAIRALMKEGDE---- 359 (637)
T ss_pred CCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH----------HHhcCCeEEeecHHHHHHHHhcCCc----
Confidence 9999999987778999999999999753 478889988 8899999999999999998875321
Q ss_pred HHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccc
Q 018211 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 294 ~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~ 346 (359)
.....++++||.++++|+++++++.+++.+.++ +++++.||+||+|+.+..
T Consensus 360 --~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 413 (637)
T PRK00174 360 --HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMIT 413 (637)
T ss_pred --ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEe
Confidence 112346789999999999999999999998885 799999999999986544
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=320.85 Aligned_cols=311 Identities=23% Similarity=0.249 Sum_probs=258.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++.+|+++|+.+.++.+||+||.+++.++|..|.+ .|+++||+|+++++|++++
T Consensus 12 ~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gi~~~~~V~l~~~~~~~~ 74 (523)
T PRK08316 12 TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLD-----------------LGLKKGDRVAALGHNSDAY 74 (523)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC-------CCCccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------VSSETT 154 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 154 (359)
+++++||+++|++++|+++..+.+++..+++.+++++++++.+....+....+.............. ......
T Consensus 75 ~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
T PRK08316 75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFAD 154 (523)
T ss_pred HHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHH
Confidence 9999999999999999999999999999999999999999988777665543332211111110000 000000
Q ss_pred ccccc-hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 155 VFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
..+.. ..........+++++|+|||||||.||+|.++|.+++.........+++.++|++++.+|++|..++...+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~ 234 (523)
T PRK08316 155 WAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPY 234 (523)
T ss_pred HHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHH
Confidence 00000 01122344568999999999999999999999999999888888888999999999999999999987666778
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.++++.+++. ++++++|++.++|.++..+.++.. ....+++++|.+++||+
T Consensus 235 ~~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gg~ 296 (523)
T PRK08316 235 LYVGATNVILDAPDPELILRT----------IEAERITSFFAPPTVWISLLRHPD--------FDTRDLSSLRKGYYGAS 296 (523)
T ss_pred HhcCceEEEecCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHcCcc--------cccCCcccceEEEEcCC
Confidence 999999999988899999998 888999999999999999887632 22346789999999999
Q ss_pred CCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 314 ALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 314 ~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++.++.+.+++.+ +.++++.||+||+|.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 331 (523)
T PRK08316 297 IMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVL 331 (523)
T ss_pred cCCHHHHHHHHHHcCCCceeeeecccccCcccccc
Confidence 99999999999988 79999999999999876554
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=322.22 Aligned_cols=308 Identities=19% Similarity=0.220 Sum_probs=250.5
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.+.++++.+|+++|++++++++||.||.++++++|..|.+ .|+++|++|+++++|+++
T Consensus 23 ~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~~ 85 (527)
T TIGR02275 23 KPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTK-----------------LGIGQGDTAVVQLPNIAE 85 (527)
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence 367889999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-CceeccCCCCC-CCCcc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPN-VSSET 153 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 153 (359)
++++++|++++|++++++++..+.+++.++++.++++.++++.... +.......... .....+..... .....
T Consensus 86 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (527)
T TIGR02275 86 FYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELF 165 (527)
T ss_pred HHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhh
Confidence 9999999999999999999999999999999999999999986532 11222211111 11111111000 00000
Q ss_pred c-ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHH
Q 018211 154 T-VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL 231 (359)
Q Consensus 154 ~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~ 231 (359)
. ..............++++++|+|||||||.||+|.++|.++..++......+.++.+|+++..+|++|.+++.. .++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~ 245 (527)
T TIGR02275 166 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGAL 245 (527)
T ss_pred HHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence 0 00000011123446789999999999999999999999999998888888888999999999999999998864 478
Q ss_pred HhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
.++..|+++++.+.+++..+++. ++++++|++..+|.++..+.+... ....+++++|.+++|
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~g 307 (527)
T TIGR02275 246 GVFYAGGCVVLAPDPSPTDCFPL----------IERHKVTVTALVPPAVALWMQAAS--------KSRYDLSSLKLLQVG 307 (527)
T ss_pred HHHhcCCeEEECCCCCHHHHHHH----------HHHhCCeEEEecHHHHHHHHhCcc--------ccCCCccceEEEEEc
Confidence 88999999999988899999888 888999999999999998876532 122457889999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCCcCccc
Q 018211 312 SSALPLPVMQQWETITGHRLLERYGMTEGCTK 343 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~ 343 (359)
|+++++++.+++.+.+|.++++.||+||++..
T Consensus 308 G~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~ 339 (527)
T TIGR02275 308 GAKFSEAAARRVPAVFGCQLQQVFGMAEGLVN 339 (527)
T ss_pred CCCCCHHHHHHHHHHhCCeEEeeeccCccCcc
Confidence 99999999999999999999999999997644
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=338.25 Aligned_cols=308 Identities=23% Similarity=0.325 Sum_probs=244.7
Q ss_pred ChHHHHHHHcCCCCCC-ceEEeeC-CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARD-SVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~-~~ai~~~-~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
.|+.+.|.+.++.+|+ ++|+.+. ++.+||+||.++++++|+.|.+ . +++||+|+++++|+
T Consensus 204 ~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~-~~~gd~Val~~~n~ 265 (718)
T PRK08043 204 ETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEK-----------------Y-SVEGERIGLMLPNA 265 (718)
T ss_pred CCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHH-----------------h-cCCCceEEEEcCCc
Confidence 3678899999999998 6888763 4789999999999999999987 4 58999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHH--HHhhhcC-CceeccCCCCCCCCcccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSG-AKFSLIPPVPNVSSETTV 155 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (359)
+++++++||++++|++++|+++.++.+++.++++++++++++++.+..+... ....... .....+............
T Consensus 266 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 345 (718)
T PRK08043 266 TISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADK 345 (718)
T ss_pred HHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHH
Confidence 9999999999999999999999999999999999999999999876543211 0111111 111111111000000000
Q ss_pred ----cc-cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 156 ----FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 156 ----~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
.. ...........++|+++|+|||||||.||||++||.++...+......++++++|++++.+|++|.+++...+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 00 0000011234568999999999999999999999999999888877778899999999999999999987778
Q ss_pred HHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
+.++..|+++++.+. ++...+++. +.++++|++..+|+++..+.+.. ...++++||.++
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~~----------~~~~~~~lr~i~ 485 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPEL----------VYDRNCTVLFGTSTFLGNYARFA----------NPYDFARLRYVV 485 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHH----------HHhcCCeEEEchHHHHHHhhhhc----------CcccccceEEEE
Confidence 899999999998875 566677777 78899999999999998775431 124578999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+||+++++++.+.|++.+|+++++.||+||++++++.
T Consensus 486 ~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~ 522 (718)
T PRK08043 486 AGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSI 522 (718)
T ss_pred EeCccCCHHHHHHHHHHcCCCeecccCcccccceEEe
Confidence 9999999999999999999999999999999876554
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=320.94 Aligned_cols=312 Identities=22% Similarity=0.327 Sum_probs=262.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|+.+.++.+||+||.+++.++|+.|.+ .|+++|++|+++++|+++
T Consensus 6 ~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~g~~~~~~V~l~~~~~~~ 68 (521)
T PRK06187 6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRA-----------------LGVKKGDRVAVFDWNSHE 68 (521)
T ss_pred CCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 468899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceeccCCCCC------CCCc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPN------VSSE 152 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~ 152 (359)
++++++||+++|++++++++..+.+++..+++.+++++++++.+..+.+....+..+. .......... ....
T Consensus 69 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (521)
T PRK06187 69 YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY 148 (521)
T ss_pred HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccH
Confidence 9999999999999999999999999999999999999999999887777666554432 1222211110 0011
Q ss_pred cccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHH
Q 018211 153 TTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL 231 (359)
Q Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 231 (359)
.+.... ...........+++++++|||||||.||++.++|.++..........+++.++|++++..|++|..++.. .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~ 227 (521)
T PRK06187 149 EELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PY 227 (521)
T ss_pred HHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HH
Confidence 111111 1111123445678999999999999999999999999998888888889999999999999999998865 44
Q ss_pred HhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
.++..|+++++++.+++..+++. ++++++|.+.++|++++.+.+.... ...+++++|.+++|
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~----------l~~~~~t~l~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~ 289 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDL----------IETERVTFFFAVPTIWQMLLKAPRA--------YFVDFSSLRLVIYG 289 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHH----------HHHhCCeEEEchHHHHHHHHcCcCC--------CccCcchhhEEEEc
Confidence 58999999999998899999988 8889999999999999999876432 22457899999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 312 SSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
|+++++++.+.|.+.+++++++.||+||+|+++....
T Consensus 290 Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 326 (521)
T PRK06187 290 GAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLP 326 (521)
T ss_pred CcCCCHHHHHHHHHHhCcchheeeccCccCcccccCC
Confidence 9999999999999988999999999999998766554
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=317.86 Aligned_cols=306 Identities=31% Similarity=0.474 Sum_probs=254.0
Q ss_pred hHHHHHHHcCCCCCCceEEee-CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
++.+.+..++ .+|+++|+.+ +++.+||.||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 4 ~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~gd~v~i~~~~~~e 65 (504)
T PRK07514 4 NLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVA-----------------LGVKPGDRVAVQVEKSPE 65 (504)
T ss_pred cHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 5788999999 9999999987 67899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc-eeccCCCCCCCCcccccc-c
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFD-Q 158 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 158 (359)
++++++|++++|++++|+++..+.+++..+++.+++++++++....+.+.......... ...+..... ........ .
T Consensus 66 ~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 144 (504)
T PRK07514 66 ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGT-GSLLEAAAAA 144 (504)
T ss_pred HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCc-ccHHHhhhhc
Confidence 99999999999999999999999999999999999999999987766665554333222 222211100 00000000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
..........++++++|+|||||||.||+|.++|.++...+......++..++|++++.+|++|..++...++.+++.|+
T Consensus 145 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 224 (504)
T PRK07514 145 PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224 (504)
T ss_pred CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence 01111233456899999999999999999999999999998888888889999999999999999998878889999999
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
++++.+.+++..+++. + .++|++..+|.++..++.... .....++++|.+++||++++++
T Consensus 225 ~~~~~~~~~~~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~~~~~ 284 (504)
T PRK07514 225 SMIFLPKFDPDAVLAL----------M--PRATVMMGVPTFYTRLLQEPR--------LTREAAAHMRLFISGSAPLLAE 284 (504)
T ss_pred EEEECCCCCHHHHHHH----------H--HhheeeecHHHHHHHHHcCCC--------CCcccccceeeEEecCCCCCHH
Confidence 9999999999999888 5 379999999999999886522 1224567899999999999999
Q ss_pred HHHHHHHHhCCcccccccCCcCcccccc
Q 018211 319 VMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+.+.|.+.++.++++.||+||++.....
T Consensus 285 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 312 (504)
T PRK07514 285 THREFQERTGHAILERYGMTETNMNTSN 312 (504)
T ss_pred HHHHHHHHhCCcceeecccccccccccC
Confidence 9999999999999999999999865543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=318.30 Aligned_cols=305 Identities=18% Similarity=0.285 Sum_probs=252.3
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+.++++.+||.||.++++++|..|.+ .|+++|++|+++++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~-----------------~g~~~~~~v~i~~~~~~~ 64 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHA-----------------RGIGQGDVVALLMKNSAA 64 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 789999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccccccc-c
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-S 159 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (359)
++++++|++++|++++|+++..+.+++.++++.+++++++++.+....... ......++.... ......... .
T Consensus 65 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~ 138 (497)
T PRK06145 65 FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-----ETPKIVIDAAAQ-ADSRRLAQGGL 138 (497)
T ss_pred HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-----ccceEEecCccc-chhHHHhccCC
Confidence 999999999999999999999999999999999999999998765433211 011111111000 000000000 0
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++++++++|||||||.||+|.++|.++..........++...+|+++...|++|.+++....+.++..|++
T Consensus 139 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~ 218 (497)
T PRK06145 139 EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGT 218 (497)
T ss_pred CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCE
Confidence 01112234668999999999999999999999999987766666777889999999999999999987667788999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.+++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++++++
T Consensus 219 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~ll~~~~--------~~~~~~~~l~~~~~gG~~~~~~~ 280 (497)
T PRK06145 219 LRIHREFDPEAVLAA----------IERHRLTCAWMAPVMLSRVLTVPD--------RDRFDLDSLAWCIGGGEKTPESR 280 (497)
T ss_pred EEECCcCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHcCCC--------ccccccccceEEEecCCCCCHHH
Confidence 999999999999998 888999999999999999887522 12245678999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCcccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
.++|.+.+ +.++++.||+||+++..+.
T Consensus 281 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 308 (497)
T PRK06145 281 IRDFTRVFTRARYIDAYGLTETCSGDTL 308 (497)
T ss_pred HHHHHHHcCCCceEEeecCcccCCccee
Confidence 99999988 6899999999999985443
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=319.47 Aligned_cols=311 Identities=22% Similarity=0.281 Sum_probs=253.1
Q ss_pred hHHHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
++.+.+.+.++.+|+++|++. .++.+||.||.++++++|..|.+ .|+++|++|++++
T Consensus 23 ~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~ 85 (538)
T TIGR03208 23 TINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-----------------LGVGRGDVVSFQL 85 (538)
T ss_pred cHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence 677889999999999999985 24689999999999999999998 6999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcCC--ceeccCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA--KFSLIPPVPN 148 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~ 148 (359)
+|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.... ............ ..+.... ..
T Consensus 86 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 164 (538)
T TIGR03208 86 PNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG-DG 164 (538)
T ss_pred CCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC-CC
Confidence 999999999999999999999999999999999999999999999987542 122222221111 1112111 11
Q ss_pred CCCcccccc-----cchh----hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecC
Q 018211 149 VSSETTVFD-----QSQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLP 219 (359)
Q Consensus 149 ~~~~~~~~~-----~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 219 (359)
......... .... .......++++++|+|||||||.||+|.++|.++...+......++...+|++++.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (538)
T TIGR03208 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP 244 (538)
T ss_pred CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCC
Confidence 000000000 0000 1112345689999999999999999999999999999888888888899999999999
Q ss_pred chhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 220 l~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
++|..++...++.+++.|+++++.+.+++..+++. ++++++|++.++|.++..+..... ...
T Consensus 245 l~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~--------~~~ 306 (538)
T TIGR03208 245 MAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL----------IRETGVTFTMASTPFLTDLCRAVK--------ESG 306 (538)
T ss_pred chhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH----------HHHhCCeEEecCHHHHHHHHhchh--------ccC
Confidence 99999988888999999999999999999999999 888999999999999998876421 112
Q ss_pred hhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
.+++++|.+++||+++++++.+++.+.+|+++++.||+||++++....+
T Consensus 307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 355 (538)
T TIGR03208 307 APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP 355 (538)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence 3568899999999999999999999989999999999999988766544
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=320.68 Aligned_cols=309 Identities=22% Similarity=0.290 Sum_probs=253.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|+++.++.+||.||.+++.++|..|.+ .|+++|++|+++++|+++
T Consensus 21 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~-----------------~gi~~g~~V~v~~~n~~~ 83 (542)
T PRK06155 21 RTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAA-----------------AGVKRGDRVALMCGNRIE 83 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence 367899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhc-C-CceeccCCCCCCC--C-c--c
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS-G-AKFSLIPPVPNVS--S-E--T 153 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~--~-~--~ 153 (359)
++++++||+++|++++|+++.++.+++..+++++++++++++.+....+....... . .....++...... . . .
T Consensus 84 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (542)
T PRK06155 84 FLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTA 163 (542)
T ss_pred HHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchh
Confidence 99999999999999999999999999999999999999999987776665543322 1 1122222111000 0 0 0
Q ss_pred cccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
...............++++++|+|||||||.||+|.++|.++..........+++.+++++++..|++|..++. .++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~ 242 (542)
T PRK06155 164 PLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQA 242 (542)
T ss_pred hhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHH
Confidence 00000000112234568999999999999999999999999998877777888899999999999999999986 57889
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.+++..++.. ++++++|++.++|+++..+.+.... .....+++|.++.||
T Consensus 243 l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~l~~~~~g~- 303 (542)
T PRK06155 243 LLAGATYVLEPRFSASGFWPA----------VRRHGATVTYLLGAMVSILLSQPAR--------ESDRAHRVRVALGPG- 303 (542)
T ss_pred HHcCceEEeeCCCCHHHHHHH----------HHHhCCcEEEchHHHHHHHHcCcCc--------cccccCceEEEEEcC-
Confidence 999999999999999999999 8889999999999999988775321 123456788877655
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++.+.|.+.+|+++++.||+||+++++...
T Consensus 304 -~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 336 (542)
T PRK06155 304 -VPAALHAAFRERFGVDLLDGYGSTETNFVIAVT 336 (542)
T ss_pred -CCHHHHHHHHHHcCCCEEeeecccccCccccCC
Confidence 678999999998999999999999999876654
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=325.23 Aligned_cols=308 Identities=19% Similarity=0.224 Sum_probs=240.0
Q ss_pred HHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
.+.|.++++.+|+++|+++ ..+++||+||.++++++|..|.+ +|+++||+|+++++|
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n 118 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-----------------LGVQRGDRVLIYMPM 118 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence 4566677888999999986 23689999999999999999999 799999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhc---CCceeccCC
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP 145 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~ 145 (359)
+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+..... ....+.+..
T Consensus 119 ~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 198 (629)
T PRK10524 119 IAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDR 198 (629)
T ss_pred CHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999987532 23333322211 112222221
Q ss_pred CCC-CC-------Ccccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCCceE
Q 018211 146 VPN-VS-------SETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQF 214 (359)
Q Consensus 146 ~~~-~~-------~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~ 214 (359)
... .. .......... ........++++++|+|||||||.||||+++|.+++.... .....++..++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~ 278 (629)
T PRK10524 199 GLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETF 278 (629)
T ss_pred CCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 100 00 0000000000 0011123568999999999999999999999999765443 34455678899999
Q ss_pred EEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 215 l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
++..|+.|..+..+.++.++..|+++++.+. +++..+++. ++++++|++.++|++++.+.+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~- 347 (629)
T PRK10524 279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRI----------VEKYKVNRMFSAPTAIRVLKKQDPA- 347 (629)
T ss_pred EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHH----------HHHcCceEEEeCHHHHHHHHhcCcc-
Confidence 9999999998877778999999999998763 467888888 8899999999999999988764211
Q ss_pred hHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccc
Q 018211 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKG 344 (359)
Q Consensus 291 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~ 344 (359)
.....++++||.+++||+++++++.+++.+.+++++++.||+||+|+.+
T Consensus 348 -----~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~ 396 (629)
T PRK10524 348 -----LLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPI 396 (629)
T ss_pred -----cccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchh
Confidence 1123467899999999999999999999998999999999999998543
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=318.52 Aligned_cols=312 Identities=22% Similarity=0.297 Sum_probs=253.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.+.+.++.+|+++|+.+.++.+||.||.++++++|..|.+ .|+++|++|+++++|+++
T Consensus 17 ~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~~ 79 (542)
T PRK07786 17 QNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSR-----------------RGVGFGDRVLILMLNRTE 79 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 689999999999999999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-c-eeccCCC--CCCCCccccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPV--PNVSSETTVF 156 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~~~ 156 (359)
++++++||+++|++++|+++..+.+++..+++++++++++++....+.+.......+. . .+.+... .......+..
T Consensus 80 ~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (542)
T PRK07786 80 FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL 159 (542)
T ss_pred HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHh
Confidence 9999999999999999999999999999999999999999998766655444322221 1 1111110 0000011110
Q ss_pred -ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhcc-CCCceEEEecCchhhHHHHHHHHHhh
Q 018211 157 -DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAPL 234 (359)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~~~~~~l 234 (359)
.............+++++++|||||||.||+|.++|+++...+......++. ..++++++..|++|.+|+ ..++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l 238 (542)
T PRK07786 160 AEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGL 238 (542)
T ss_pred hccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHH
Confidence 0001111223345789999999999999999999999999888777777776 578999999999999998 4688899
Q ss_pred hcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 235 ~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
..|+++++.+ .+++..+++. ++++++|.+.++|+++..+........ ...++|.+++||
T Consensus 239 ~~G~~~v~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~~~---------~~~~lr~i~~gg 299 (542)
T PRK07786 239 LLGAPTVIYPLGAFDPGQLLDV----------LEAEKVTGIFLVPAQWQAVCAEQQARP---------RDLALRVLSWGA 299 (542)
T ss_pred HccCEEEEccCCCcCHHHHHHH----------HHHcCCeEEEehHHHHHHHHhCcccCc---------cCcceEEEEECC
Confidence 9999999875 5789999998 888999999999999999987632111 113699999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccCCcCccccccccc
Q 018211 313 SALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
+++++++.+.+.+.+ +.++++.||+||++++.+....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~ 337 (542)
T PRK07786 300 APASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLG 337 (542)
T ss_pred CCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCc
Confidence 999999999999988 8999999999999987665443
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=319.16 Aligned_cols=312 Identities=23% Similarity=0.267 Sum_probs=248.2
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC--ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.|.+.++.+|+++|+++.+ +.+||+||.++++++|+.|.+ .|+++||+|+++++|++
T Consensus 17 ~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~gd~V~i~~~n~~ 79 (534)
T PRK05852 17 RIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTR-----------------SGLLPGDRVALRMGSNA 79 (534)
T ss_pred cHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCcH
Confidence 57789999999999999998743 579999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHH-hhhcCCceeccCCC-C-CCC---Ccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV-ASKSGAKFSLIPPV-P-NVS---SET 153 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~---~~~ 153 (359)
++++++|||+++|++++++++.++.+++.+++++++++.+|++.......... ....+......... . ... ...
T Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (534)
T PRK05852 80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLD 159 (534)
T ss_pred HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999876432211110 00001111110000 0 000 000
Q ss_pred cccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
................++.++|+|||||||.||||.++|.++...+......+++..+|++++..|++|..++...++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 239 (534)
T PRK05852 160 AATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLAT 239 (534)
T ss_pred cccCCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHH
Confidence 00000000011112246789999999999999999999999999888888888899999999999999999998888999
Q ss_pred hhcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 234 LYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 234 l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
++.|+++++++ .+++..+++. ++++++|++.++|.++..+.+..... ....+.+++|.+.++
T Consensus 240 l~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~ 303 (534)
T PRK05852 240 LASGGAVLLPARGRFSAHTFWDD----------IKAVGATWYTAVPTIHQILLERAATE------PSGRKPAALRFIRSC 303 (534)
T ss_pred HhcCCeEEeCCCcCcCHHHHHHH----------HHHcCCcEEEcChHHHHHHHhhcccc------cccccCCCeeEEEEC
Confidence 99999999865 4788899998 88899999999999999998763211 012346789999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 312 SSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
|+++++++.+.|.+.+|.++++.||+||++..++.
T Consensus 304 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 338 (534)
T PRK05852 304 SAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTT 338 (534)
T ss_pred CCCCCHHHHHHHHHHhCCChhhccCccccchhhhc
Confidence 99999999999999999999999999999976654
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=317.44 Aligned_cols=305 Identities=24% Similarity=0.370 Sum_probs=252.1
Q ss_pred HHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~ 82 (359)
+.+.|.+.++.+|+++|+.+.++++||+||.+++.++|..|.+ .|+++|++|+++++|+++++
T Consensus 2 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~-----------------~g~~~~~~V~i~~~n~~~~~ 64 (515)
T TIGR03098 2 LHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRG-----------------LGLARGERVAIYLDKRLETV 64 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHHH
Confidence 6788999999999999999999999999999999999999998 69999999999999999999
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceeccCCCCC-------CCCcc
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPN-------VSSET 153 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~ 153 (359)
++++||+++|++++|+++.++.+++..+++++++++++++.+....+......... ..+.+..... .....
T Consensus 65 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (515)
T TIGR03098 65 TAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWP 144 (515)
T ss_pred HHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHH
Confidence 99999999999999999999999999999999999999988766555443332211 1112211110 00111
Q ss_pred cccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
................+++++|+|||||||.||+|.+||.++...+......++...+|++++.+|++|..++. .++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~ 223 (515)
T TIGR03098 145 KLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTTA 223 (515)
T ss_pred HhhccccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHHH
Confidence 11111111112233457899999999999999999999999999888888888888999999999999999985 68899
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.++++.+++. ++++++|++.++|+++..+.+... ...+++++|.+++||+
T Consensus 224 l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~---------~~~~~~~l~~~~~~g~ 284 (515)
T TIGR03098 224 FYVGATVVLHDYLLPRDVLKA----------LEKHGITGLAAVPPLWAQLAQLDW---------PESAAPSLRYLTNSGG 284 (515)
T ss_pred HHcCCEEEEcCCCCHHHHHHH----------HHHcCCceEecChHHHHHHHhccc---------CCCCccceEEEEecCC
Confidence 999999999999999999998 888999999999999999876411 1135678999999999
Q ss_pred CCCHHHHHHHHHHh-CCcccccccCCcCcccc
Q 018211 314 ALPLPVMQQWETIT-GHRLLERYGMTEGCTKG 344 (359)
Q Consensus 314 ~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~ 344 (359)
++++++.+.+++.+ +..+++.||+||++.+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 316 (515)
T TIGR03098 285 AMPRATLSRLRSFLPNARLFLMYGLTEAFRST 316 (515)
T ss_pred cCCHHHHHHHHHHCCCCeEeeeeccccccceE
Confidence 99999999999988 78999999999998644
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=315.46 Aligned_cols=298 Identities=20% Similarity=0.251 Sum_probs=246.7
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
|++.+.|.++++.+|+++|+.+.+.++||.||.++++++|+.|.+ .| .+|++|+|+++|+++
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~~-~~~~~v~i~~~~~~~ 62 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNE-----------------KE-SKNKTIAILLENRIE 62 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHH-----------------hC-CCCCEEEEEcCCCHH
Confidence 889999999999999999999999999999999999999999998 56 489999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.++++.+++++++++......+... ......+...... ......
T Consensus 63 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~ 133 (487)
T PRK07638 63 FLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE----EGRVIEIDEWKRM-----IEKYLP 133 (487)
T ss_pred HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc----cceEEEehhhhhh-----hhhccc
Confidence 9999999999999999999999999999999999999999987654433211 1111111110000 000000
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
.........+++++|+|||||||.||||.++|.+++..+......+++..+|+++...|++|..++ ..++.+++.|+++
T Consensus 134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~ 212 (487)
T PRK07638 134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTV 212 (487)
T ss_pred cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEE
Confidence 111112234678999999999999999999999999988888888889999999999999999877 4688899999999
Q ss_pred EEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHH
Q 018211 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (359)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~ 320 (359)
++.+.+++..+++. ++++++|++.++|+++..+.+... ...+.+.++++|++++.++.
T Consensus 213 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~------------~~~~~~~~~~~G~~l~~~~~ 270 (487)
T PRK07638 213 HLMRKFIPNQVLDK----------LETENISVMYTVPTMLESLYKENR------------VIENKMKIISSGAKWEAEAK 270 (487)
T ss_pred EEcCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcC------------cCCceeEEEEcCCCCCHHHH
Confidence 99999999999999 889999999999999999987511 12355667889999999999
Q ss_pred HHHHHHh-CCcccccccCCcCcccccccc
Q 018211 321 QQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 321 ~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+++.+.+ +.++++.||+||++.++....
T Consensus 271 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 299 (487)
T PRK07638 271 EKIKNIFPYAKLYEFYGASELSFVTALVD 299 (487)
T ss_pred HHHHHHcCCCeEEEEecCCccCceEEecc
Confidence 9999998 789999999999997655443
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=321.47 Aligned_cols=303 Identities=20% Similarity=0.280 Sum_probs=237.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCc----------cccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQK----------SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~----------~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~ 70 (359)
+|+.+.|.+.++.+|+++|+++.+. ++||+||.++++++|..|.+ .|+++||+
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-----------------~g~~~gd~ 68 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-----------------AGIGRGMR 68 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCE
Confidence 5788899999999999999998543 89999999999999999999 79999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc--cHHHHHHHhhhcCCceeccCCC--
Q 018211 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPV-- 146 (359)
Q Consensus 71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 146 (359)
|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+ ....+...........+.+...
T Consensus 69 V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (552)
T PRK09274 69 AVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLL 148 (552)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccc
Confidence 999999999999999999999999999999999999999999999999998752 1121111100000011111110
Q ss_pred CCCCCccccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhH
Q 018211 147 PNVSSETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH 224 (359)
Q Consensus 147 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 224 (359)
............ ..........++++++|+|||||||.||+|.++|+++...+......+++.++|+.++..|++|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 228 (552)
T PRK09274 149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF 228 (552)
T ss_pred cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh
Confidence 000001111100 001112234568999999999999999999999999999988888888999999999999998754
Q ss_pred HHHHHHHHhhhcCcEEEEcC-------CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 225 GLFNALLAPLYAGATVEFMP-------KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 225 ~~~~~~~~~l~~G~~i~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
++ ..|+++++.+ .+++..+++. ++++++|+++++|++++.+.+... .
T Consensus 229 ~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--------~ 282 (552)
T PRK09274 229 GP--------ALGMTSVIPDMDPTRPATVDPAKLFAA----------IERYGVTNLFGSPALLERLGRYGE--------A 282 (552)
T ss_pred hh--------hhCCeEEecCcccccccccCHHHHHHH----------HHHcCCeEEeccHHHHHHHHHHhh--------h
Confidence 43 3577777764 4678889988 889999999999999999987521 1
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHh--CCcccccccCCcCcccccc
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~TE~g~~~~~ 346 (359)
...++++||.+++||+++++++.++|.+.+ |+++++.||+||+++++..
T Consensus 283 ~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 333 (552)
T PRK09274 283 NGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSI 333 (552)
T ss_pred cCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEee
Confidence 234688999999999999999999999998 5799999999999876543
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=317.19 Aligned_cols=310 Identities=22% Similarity=0.346 Sum_probs=250.1
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC-ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
++.+.|.+.++.+|+++|+.+++ +.+||+||.++++++|+.|.+ .|+++||+|+++++|+++
T Consensus 24 ~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~-----------------~G~~~gd~V~i~~~n~~~ 86 (547)
T PRK06087 24 SLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLA-----------------KGIEPGDRVAFQLPGWCE 86 (547)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 57788999999999999999865 799999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhcCC--ceeccCCCCCCC---
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA--KFSLIPPVPNVS--- 150 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~--- 150 (359)
++++++||+++|++++|+++..+.+++.++++.+++++++++... .+.+......... ....+.......
T Consensus 87 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (547)
T PRK06087 87 FTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSL 166 (547)
T ss_pred HHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCcc
Confidence 999999999999999999999999999999999999999997532 2333333222221 122221111000
Q ss_pred Cccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHH
Q 018211 151 SETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229 (359)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 229 (359)
........ ...........+++++|+|||||||.||+|.++|.++......+...+++.++|++++..|++|.++++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 246 (547)
T PRK06087 167 SLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG 246 (547)
T ss_pred CHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence 00000000 00011223456899999999999999999999999999888887888889999999999999999998888
Q ss_pred HHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 230 ~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
++.++..|+++++.+.+++..+++. ++++++|++..+|.++..+++... ....+++++|.++
T Consensus 247 ~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~--------~~~~~~~~lr~i~ 308 (547)
T PRK06087 247 VTAPFLIGARSVLLDIFTPDACLAL----------LEQQRCTCMLGATPFIYDLLNLLE--------KQPADLSALRFFL 308 (547)
T ss_pred HHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCCEEeccHHHHHHHHhccc--------cCCCCCCCeEEEE
Confidence 8999999999999999999999998 788999999988877777766422 1224578999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+||+++++++.+.+.+. |+++++.||+||++++....
T Consensus 309 ~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~ 345 (547)
T PRK06087 309 CGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVN 345 (547)
T ss_pred EcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccC
Confidence 99999999999988764 99999999999999776543
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=318.06 Aligned_cols=312 Identities=20% Similarity=0.291 Sum_probs=246.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.+.++.+|+++|++++++.+||+||.++++++|..|.+. .|+++||+|+++++|++++
T Consensus 25 ~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~----------------~gi~~gd~Vai~~~n~~~~ 88 (562)
T PRK05677 25 NIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQH----------------TDLKPGDRIAVQLPNVLQY 88 (562)
T ss_pred cHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence 678899999999999999999889999999999999999999862 4999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCC----------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS---------- 151 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (359)
++++||++++|++++|+++.++.+++.+++++++++++|++.+....+.+.......+..++........
T Consensus 89 ~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
T PRK05677 89 PVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAV 168 (562)
T ss_pred HHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccc
Confidence 9999999999999999999999999999999999999999877665555443322222222111000000
Q ss_pred ------------------cccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc--cC
Q 018211 152 ------------------ETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YT 209 (359)
Q Consensus 152 ------------------~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~ 209 (359)
..+...... ........++++++|+|||||||.||||.++|+++..++......++ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 248 (562)
T PRK05677 169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN 248 (562)
T ss_pred hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence 000000000 00112235689999999999999999999999999887665555443 33
Q ss_pred -CCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhh
Q 018211 210 -SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287 (359)
Q Consensus 210 -~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 287 (359)
..+.+++.+|++|..++...++..+..|++.++.+ .+++..+++. ++++++|++.++|.++..+....
T Consensus 249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~ 318 (562)
T PRK05677 249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE----------LGKWKFSGFVGLNTLFVALCNNE 318 (562)
T ss_pred CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH----------HHHcCceEEecHHHHHHHHHhCc
Confidence 34788999999999998767777888888877665 4688888888 88999999999999999887652
Q ss_pred hhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
. ....+++++|.+++||+++++++.+.|.+.+|+++++.||+||+++++...
T Consensus 319 ~--------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 370 (562)
T PRK05677 319 A--------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVN 370 (562)
T ss_pred c--------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeec
Confidence 1 112346789999999999999999999998899999999999998766544
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=317.85 Aligned_cols=306 Identities=19% Similarity=0.256 Sum_probs=236.4
Q ss_pred hHHHHHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.|.+.|+.+|+++|+++ +++.+||+||.++++++|+.|.+ .|+++|++|+++++|++
T Consensus 15 ~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~ 77 (540)
T PRK05857 15 TVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRA-----------------QSVSRGSRVLVISDNGP 77 (540)
T ss_pred chHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-----------------hCcCCCCEEEEEcCCCH
Confidence 578899999999999999985 34689999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhc-CCceeccCCCCCCCCccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS-GAKFSLIPPVPNVSSETTVFDQ 158 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (359)
++++++|||+++|++++|+++.++.+++.++++.++++.++++.........+.+.. ....+.++..............
T Consensus 78 e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (540)
T PRK05857 78 ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDA 157 (540)
T ss_pred HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccc
Confidence 999999999999999999999999999999999999999999876432222111111 1111111111000000000000
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhHHHHHHHHHhh
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l 234 (359)
..........++++++++|||||||.||||.++|+++..+...... .+....+++.+..+|++|..+++ .++.++
T Consensus 158 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l 236 (540)
T PRK05857 158 ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCL 236 (540)
T ss_pred cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHh
Confidence 0001122345689999999999999999999999999876544322 23455688999999999999986 477889
Q ss_pred hcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCC
Q 018211 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314 (359)
Q Consensus 235 ~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~ 314 (359)
+.|+++++. ..++..+++. ++++++|++..+|+++..+.+.... ...+++++|.+++||++
T Consensus 237 ~~G~~~v~~-~~~~~~~~~~----------i~~~~it~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG~~ 297 (540)
T PRK05857 237 MHGGLCVTG-GENTTSLLEI----------LTTNAVATTCLVPTLLSKLVSELKS--------ANATVPSLRLVGYGGSR 297 (540)
T ss_pred hcceeEEec-CCChhHHHHH----------HHhcCcceEEeChHHHHHHHhcccc--------CCCcCccceEEEEcCcc
Confidence 999998764 4678888888 8999999999999999999875321 12457899999999999
Q ss_pred CCHHHHHHHHHHhCCcccccccCCcCccccc
Q 018211 315 LPLPVMQQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 315 l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
++....+ +.+.+|+++++.||+||++....
T Consensus 298 ~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~ 327 (540)
T PRK05857 298 AIAADVR-FIEATGVRTAQVYGLSETGCTAL 327 (540)
T ss_pred CCchhHH-HHHHhCCeeecccCCCcCCceee
Confidence 9988875 55567999999999999986543
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=348.81 Aligned_cols=301 Identities=20% Similarity=0.309 Sum_probs=251.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++.+|+++|+++.++.+||+||.++++++|..|.+ .|+++|++|+++++|++++
T Consensus 459 ~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~g~~V~l~~~~~~~~ 521 (1296)
T PRK10252 459 TLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRE-----------------RGVKPGDSVAVALPRSVFL 521 (1296)
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 57788999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
+++++||+++|++++|+++.++.+++.++++++++++++++......+.... .......... ......
T Consensus 522 i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~ 589 (1296)
T PRK10252 522 TLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVP---DLTSLCYNAP---------LAPQGA 589 (1296)
T ss_pred HHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCC---Cceeeecccc---------cccccC
Confidence 9999999999999999999999999999999999999999876544432210 0001100000 000011
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+......++++++|++++..|++|..+++ .++.+|+.|++++
T Consensus 590 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 668 (1296)
T PRK10252 590 APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLV 668 (1296)
T ss_pred CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEE
Confidence 111223568999999999999999999999999999999988999999999999999999999985 6889999999999
Q ss_pred EcC---CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 242 FMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 242 ~~~---~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
+.+ ..++..+++. ++++++|++.++|+++..+++..... .....++++|.+++||++++++
T Consensus 669 ~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~~~------~~~~~~~~lr~i~~gGe~l~~~ 732 (1296)
T PRK10252 669 MAEPEAHRDPLAMQQF----------FAEYGVTTTHFVPSMLAAFVASLTPE------GARQSCASLRQVFCSGEALPAD 732 (1296)
T ss_pred ECChhccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhhhccc------cccccCCCccEEEEecCCCCHH
Confidence 986 3578888888 88899999999999999887652111 0112457899999999999999
Q ss_pred HHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 319 VMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.+.|.+.+|++++|.||+||++..++...
T Consensus 733 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 762 (1296)
T PRK10252 733 LCREWQQLTGAPLHNLYGPTEAAVDVSWYP 762 (1296)
T ss_pred HHHHHHhcCCCEEEeCCCcchhhheeeeee
Confidence 999999888999999999999987666543
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=326.93 Aligned_cols=294 Identities=20% Similarity=0.234 Sum_probs=239.6
Q ss_pred hHHHHHHHcCCC--CCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSM--ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~--~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
|+.+.|.++++. +|+++|+++. ..+||+||.++++++|..|.+ +|+++||+|+++++|++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~-----------------~g~~~g~~V~i~~~~~~ 66 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRN-----------------RGLSSGDRVLLCLPDSP 66 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCH
Confidence 577888888875 7999999874 589999999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS 159 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+++++++||+++|++++|+++.++.+++.+++++++++++|++......+... ....... .... ... .
T Consensus 67 ~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~---~~~~--~~~-~ 134 (705)
T PRK06060 67 DLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS------RVAEAAE---LMSE--AAR-V 134 (705)
T ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc------ccchhhh---hhhh--ccc-c
Confidence 99999999999999999999999999999999999999999987544332110 0000000 0000 000 0
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH-HhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
.........++++++|+|||||||.||||.++|.++...+.... ..+++.+.|++++..|++|..++...++.++..|+
T Consensus 135 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~ 214 (705)
T PRK06060 135 APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGG 214 (705)
T ss_pred CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCC
Confidence 00011123468899999999999999999999999988776654 45788899999999999999888667888999999
Q ss_pred EEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 239 ~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++++.+ .+++..++.. +.++++|+++++|+++..+.+... ...+++||.+++||+++++
T Consensus 215 ~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~----------~~~~~slr~i~~gGe~l~~ 274 (705)
T PRK06060 215 SAVINSAPVTPEAAAIL----------SARFGPSVLYGVPNFFARVIDSCS----------PDSFRSLRCVVSAGEALEL 274 (705)
T ss_pred EEEEeCCCCCHHHHHHH----------HHhcCCeEEeeHHHHHHHHHHhcc----------cccccceeEEEEecCcCCH
Confidence 999987 4677777776 788999999999999998876421 2346789999999999999
Q ss_pred HHHHHHHHHh-CCcccccccCCcCccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~ 345 (359)
++.++|.+.+ ++++++.||+||++..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 303 (705)
T PRK06060 275 GLAERLMEFFGGIPILDGIGSTEVGQTFV 303 (705)
T ss_pred HHHHHHHHHcCCCceEeeeeccccCceEE
Confidence 9999999988 589999999999986543
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=314.84 Aligned_cols=310 Identities=18% Similarity=0.245 Sum_probs=246.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.+.+.++++|+++|+.++++++||.||.+++.++|..|.+ .|+++|++|+++++|+++
T Consensus 7 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~ 69 (528)
T PRK07470 7 MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAA-----------------RGVRKGDRILVHSRNCNQ 69 (528)
T ss_pred CCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHH
Confidence 688999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceeccCCCCCCCCccccccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ 158 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (359)
++++++||+++|++++++++..+.+++.++++.++++.++++++..+.+......... ..+.+...............
T Consensus 70 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (528)
T PRK07470 70 MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR 149 (528)
T ss_pred HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc
Confidence 9999999999999999999999999999999999999999998766555444332211 11111111000000101000
Q ss_pred c--hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh--ccCCCceEEEecCchhhHHHHHHHHHhh
Q 018211 159 S--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPL 234 (359)
Q Consensus 159 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~~~~~~~~~~l 234 (359)
. .........++++++|+|||||||.||+|.++|.++...+....... +....|+++..+|++|..++. .++ .+
T Consensus 150 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~ 227 (528)
T PRK07470 150 HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QV 227 (528)
T ss_pred CCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HH
Confidence 0 00112234568999999999999999999999999976554433322 567889999999999999985 344 46
Q ss_pred hcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 235 ~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+.|++.++.+ .++++.+++. ++++++|++.++|++++.+.+.... ...+++++|.+++||
T Consensus 228 ~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG 289 (528)
T PRK07470 228 ARGAATVLLPSERFDPAEVWAL----------VERHRVTNLFTVPTILKMLVEHPAV--------DRYDHSSLRYVIYAG 289 (528)
T ss_pred hcCceEEEecccCcCHHHHHHH----------HHhcCCeEEechHHHHHHHHhCcCc--------CCCCCcceEEEEEcC
Confidence 7777776665 5788888888 8899999999999999999875321 224578999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.+++.+.+|.++++.||+||+++.++..
T Consensus 290 ~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~ 324 (528)
T PRK07470 290 APMYRADQKRALAKLGKVLVQYFGLGEVTGNITVL 324 (528)
T ss_pred CCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeec
Confidence 99999999999988999999999999998876543
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=313.50 Aligned_cols=309 Identities=24% Similarity=0.284 Sum_probs=253.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.++++++|+++|++++++.+||.||.+++++++..|.+ .|+++|++|+++++|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~~~~V~i~~~~~~~~ 75 (524)
T PRK06188 13 TYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALLSLNRPEV 75 (524)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHH
Confidence 67889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc-cHHHHHHHhhhcCC-c-eeccCCCCCCCCcccc-cc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSGA-K-FSLIPPVPNVSSETTV-FD 157 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~ 157 (359)
+++++||+++|++++|+++..+.+++..+++.++++.++++.. ....+......... . ...+............ ..
T Consensus 76 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (524)
T PRK06188 76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAK 155 (524)
T ss_pred HHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhc
Confidence 9999999999999999999999999999999999999999876 33333333222211 1 1111111110000000 00
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++++++|+|||||||.||+|.++|.++...+......++...+|++++..|++|..++. ++.++..|
T Consensus 156 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G 233 (524)
T PRK06188 156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRG 233 (524)
T ss_pred cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcC
Confidence 0011111223456799999999999999999999999999988888888999999999999999998874 67889999
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
+++++.+.+++..+++. ++++++|++.++|+++..+++... ....+++++|.+++||+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~--------~~~~~l~~lr~~~~gg~~~~~ 295 (524)
T PRK06188 234 GTVIVLAKFDPAEVLRA----------IEEQRITATFLVPTMIYALLDHPD--------LRTRDLSSLETVYYGASPMSP 295 (524)
T ss_pred CEEEEcCCCCHHHHHHH----------HHHhCCEEEEehHHHHHHHHhCcC--------ccCCCCcceeEEEEcCCCCCH
Confidence 99999999999999998 888999999999999999987632 122457899999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+..+.+.+.+|..+++.||+||+++.++..
T Consensus 296 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 325 (524)
T PRK06188 296 VRLAEAIERFGPIFAQYYGQTEAPMVITYL 325 (524)
T ss_pred HHHHHHHHHhCchhhheeCccccCCceeec
Confidence 999999988999999999999997766554
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=313.67 Aligned_cols=313 Identities=24% Similarity=0.281 Sum_probs=251.1
Q ss_pred ChHHHHHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+++.+.|.+.++.+|+++|+.+ .++++||+||.++++++|..|.+ .|+++||+|+++++|+
T Consensus 16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~ 78 (559)
T PRK08315 16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLA-----------------LGIEKGDRVGIWAPNV 78 (559)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCC
Confidence 4688999999999999999987 56789999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhc-------------CC--
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS-------------GA-- 138 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-------------~~-- 138 (359)
+++++++|||+++|++++|+++..+.+++..+++++++++++++.... ..+.+..... +.
T Consensus 79 ~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (559)
T PRK08315 79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELR 158 (559)
T ss_pred hHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCce
Confidence 999999999999999999999999999999999999999999986432 2222221111 00
Q ss_pred ceeccCCC--CCCCCccccccc-------chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccC
Q 018211 139 KFSLIPPV--PNVSSETTVFDQ-------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT 209 (359)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 209 (359)
........ ............ ..........++++++++|||||||.||+|.++|.++..++......+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 238 (559)
T PRK08315 159 RVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLT 238 (559)
T ss_pred eEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCC
Confidence 00111100 000000000000 000112233567899999999999999999999999999988888888999
Q ss_pred CCceEEEecCchhhHHHHHHHHHhhhcCcEEEE-cCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhh
Q 018211 210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEF-MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288 (359)
Q Consensus 210 ~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 288 (359)
++|+++...|++|..++...++.++..|+++++ ...+++..+++. ++++++|++.++|+++..++....
T Consensus 239 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~~~~~~~ 308 (559)
T PRK08315 239 EEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA----------VEEERCTALYGVPTMFIAELDHPD 308 (559)
T ss_pred CCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH----------HHHcCCeEEecchHHHHHHHhCcc
Confidence 999999999999999998888999999999994 456889999988 889999999999999988876522
Q ss_pred hhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC-cccccccCCcCcccccccc
Q 018211 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~~ 348 (359)
....++++||.+++||++++.++.+++.+.++. ++++.||+||++.+++.+.
T Consensus 309 --------~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~ 361 (559)
T PRK08315 309 --------FARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTR 361 (559)
T ss_pred --------cCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecC
Confidence 122357889999999999999999999998875 4999999999998766544
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=313.54 Aligned_cols=306 Identities=22% Similarity=0.313 Sum_probs=241.4
Q ss_pred HHHHHHHcCCCCCCceEEeeCC--ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+.+.+... +.+|+++|+++.. ..+||+||.++++++|..|.++ .|+++||+|+++++|+++
T Consensus 42 ~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~----------------~G~~~gd~V~i~~~n~~~ 104 (560)
T PLN02574 42 AVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHV----------------MGVRQGDVVLLLLPNSVY 104 (560)
T ss_pred HHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCcch
Confidence 34455554 6789999999853 4799999999999999999973 499999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC-------CCCcc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------VSSET 153 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 153 (359)
+++++|||+++|++++|+++..+.+++.++++.+++++++++.+..+.+... ......+..... .....
T Consensus 105 ~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PLN02574 105 FPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL----GVPVIGVPENYDFDSKRIEFPKFY 180 (560)
T ss_pred HHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc----CCcEEecCcccccccCccCcccHH
Confidence 9999999999999999999999999999999999999999998765554331 111111111000 00000
Q ss_pred cccccc-hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhcc-CCCceEEEecCchhhHHHH
Q 018211 154 TVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEY-TSADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 154 ~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~-~~~d~~l~~~pl~h~~~~~ 227 (359)
...... .........++++++|+|||||||.||||.++|+++...+..+.. .+.. ..+++++..+|++|..++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 260 (560)
T PLN02574 181 ELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS 260 (560)
T ss_pred HHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHH
Confidence 000000 111122345689999999999999999999999999987766543 2222 3568899999999999987
Q ss_pred HHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceE
Q 018211 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (359)
..++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+.... ....+++++|.
T Consensus 261 ~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-------~~~~~~~~lr~ 323 (560)
T PLN02574 261 LFVVGLLSLGSTIVVMRRFDASDMVKV----------IDRFKVTHFPVVPPILMALTKKAKG-------VCGEVLKSLKQ 323 (560)
T ss_pred HHHHHHHhcCCEEEEecCCCHHHHHHH----------HHHcCCeEEecCCHHHHHHHhCccc-------cccCccccceE
Confidence 777788899999999999999999999 8899999999999999999876321 12346789999
Q ss_pred EEecCCCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 308 MMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
+++||+++++++.++|.+.+ ++++++.||+||++.+++.
T Consensus 324 ~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 363 (560)
T PLN02574 324 VSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTR 363 (560)
T ss_pred EEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeec
Confidence 99999999999999999988 7999999999999876543
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=312.32 Aligned_cols=301 Identities=19% Similarity=0.286 Sum_probs=242.1
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccC-CCCCeEEEEcCCCHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFE 80 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv-~~gd~V~i~~~n~~~ 80 (359)
++.+.|.+++ .|+++|+++.+..+||.||.++++++|..|.+ .|+ ++||+|+++++|+++
T Consensus 4 ~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~-----------------~g~~~~~~~V~i~~~n~~~ 64 (540)
T PRK13388 4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIA-----------------LADPDRPLHVGVLLGNTPE 64 (540)
T ss_pred hHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------hcCCCCCCEEEEECCCCcH
Confidence 5667777765 69999999999999999999999999999999 699 799999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccc-cc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD-QS 159 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (359)
++++++||+++|++++|+++.++.+++.++++.+++++++++.+....+.... ......+.+.. .. ...... ..
T Consensus 65 ~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~i~~~~-~~---~~~~~~~~~ 139 (540)
T PRK13388 65 MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD-LPGVRVLDVDT-PA---YAELVAAAG 139 (540)
T ss_pred HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc-ccCceEEEccc-hh---hhhhhcccc
Confidence 99999999999999999999999999999999999999999887665554431 01112222211 00 000000 00
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++++++++|||||||.||||.++|.++..........+++.++|+++..+|++|..++...++.++..|++
T Consensus 140 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 140 ALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred CcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 01111224568999999999999999999999999998888888888999999999999999999987666678999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.+++..+++. ++++++|++..+|..+..+....... .....+++.+ .|++++++.
T Consensus 220 ~v~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~l~~l~~~~~~~--------~~~~~~l~~~--~G~~~~~~~ 279 (540)
T PRK13388 220 VALPAKFSASGFLDD----------VRRYGATYFNYVGKPLAYILATPERP--------DDADNPLRVA--FGNEASPRD 279 (540)
T ss_pred EEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCCCCc--------cccccceEEE--ECCCCCHHH
Confidence 999988999999998 88899999999999999887653211 1122456643 366778888
Q ss_pred HHHHHHHhCCcccccccCCcCcccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.+.|.+.+|.++++.||+||+++++..
T Consensus 280 ~~~~~~~~~~~l~~~YG~tE~~~~~~~ 306 (540)
T PRK13388 280 IAEFSRRFGCQVEDGYGSSEGAVIVVR 306 (540)
T ss_pred HHHHHHHhCCceecccccccccceeec
Confidence 899999899999999999999976654
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=313.42 Aligned_cols=307 Identities=17% Similarity=0.219 Sum_probs=244.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+|+.+.|.+.++.+|+++|+.+. ++.+||.||.+++.++|..|.+ .|+++||+|+++++|+
T Consensus 28 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-----------------~g~~~g~~V~i~~~~~ 90 (546)
T PLN02330 28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-----------------LGLRKGQVVVVVLPNV 90 (546)
T ss_pred CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCc
Confidence 47889999999999999999873 5799999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCC--CCCCccccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP--NVSSETTVF 156 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (359)
++++++++||+++|++++|+++..+.+++.+++++++++++++++.....+.... ...+.+.... .........
T Consensus 91 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~ 166 (546)
T PLN02330 91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG----LPVIVLGEEKIEGAVNWKELL 166 (546)
T ss_pred hHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC----CcEEEecCCCCCCcccHHHHH
Confidence 9999999999999999999999999999999999999999999987766654431 1222221110 000011110
Q ss_pred ccc----hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc--cCCCceEEEecCchhhHHHHHHH
Q 018211 157 DQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 157 ~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
... .........++++++|+|||||||.||||.++|.++..++.......+ ....+..+..+|++|.+++...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 246 (546)
T PLN02330 167 EAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGIC 246 (546)
T ss_pred hhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHH
Confidence 000 001122334688999999999999999999999999876543221111 22356889999999999987677
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc--cceEE
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK--QLRLM 308 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~~i 308 (359)
+.++..|+++++.+.+++..+++. ++++++|.+.++|.++..+.+.... ...++. .+|.+
T Consensus 247 ~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~~~l~~i 308 (546)
T PLN02330 247 CATLRNKGKVVVMSRFELRTFLNA----------LITQEVSFAPIVPPIILNLVKNPIV--------EEFDLSKLKLQAI 308 (546)
T ss_pred HHHhhcCCEEEEecccCHHHHHHH----------HHHcCCeeeecCCHHHHHHHhCccc--------cccccchheeeeE
Confidence 888999999999999999999999 8889999999999999999875221 112222 47899
Q ss_pred EecCCCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 309 ~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
++||+++++++.++|.+.| |+++++.||+||++.+...
T Consensus 309 ~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 347 (546)
T PLN02330 309 MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLT 347 (546)
T ss_pred EEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceec
Confidence 9999999999999999998 8999999999999865543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=310.84 Aligned_cols=300 Identities=20% Similarity=0.283 Sum_probs=243.7
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.+.++.+|+++|+.++++.+||.|+.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 35 ~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~-----------------~gi~~g~~V~i~~~~~~~ 97 (516)
T PRK13383 35 TNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTR-----------------DGVAPGRAVGVMCRNGRG 97 (516)
T ss_pred CcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCHH
Confidence 367888999999999999999988999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++||++++|++++|+++.++.+++.++++.++++.+++++...+.+..... ....+.... .... ..
T Consensus 98 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~--~~~~----~~- 166 (516)
T PRK13383 98 FVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD----AVAVIDPAT--AGAE----ES- 166 (516)
T ss_pred HHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc----ceEEeccch--hhhh----cC-
Confidence 999999999999999999999999999999999999999998876655443321 111111100 0000 00
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHH--HHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID--AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
.......++.++|+|||||||.||+|.++|.... .........+++..+|+++..+|++|.+++. .++.++..|+
T Consensus 167 --~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~ 243 (516)
T PRK13383 167 --GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGG 243 (516)
T ss_pred --CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCC
Confidence 0011234567899999999999999999997432 1222233456788899999999999999986 4777899999
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
++++...++++.+++. ++++++|.+..+|.++..+....... ....+++++|.+++||++++++
T Consensus 244 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~gG~~l~~~ 307 (516)
T PRK13383 244 TVLTHRHFDAEAALAQ----------ASLHRADAFTAVPVVLARILELPPRV------RARNPLPQLRVVMSSGDRLDPT 307 (516)
T ss_pred EEEECCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHhccccc------cccCCCCceEEEEECCCCCCHH
Confidence 9999999999999998 78899999999999999987642211 0113468899999999999999
Q ss_pred HHHHHHHHhCCcccccccCCcCccccccc
Q 018211 319 VMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+.++|.+.+|.++++.||+||+|+.+...
T Consensus 308 ~~~~~~~~~g~~v~~~YG~tE~~~~~~~~ 336 (516)
T PRK13383 308 LGQRFMDTYGDILYNGYGSTEVGIGALAT 336 (516)
T ss_pred HHHHHHHHcCchhhhcccccccccceecc
Confidence 99999999999999999999998765543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=370.70 Aligned_cols=298 Identities=21% Similarity=0.316 Sum_probs=253.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++++||+||+++++++|..|.+ +|+++|++|+|+++|++++
T Consensus 3096 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~gv~~g~~V~l~~~~s~~~ 3158 (3956)
T PRK12467 3096 LVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIA-----------------IGVGPDVLVGVAVERSVEM 3158 (3956)
T ss_pred cHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEeCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++|||+++|++++|+++.++.+++.++++++++++++++....+.+... .......++... .......
T Consensus 3159 vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~ 3228 (3956)
T PRK12467 3159 IVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---AGDTALTLDRLD-------LNGYSEN 3228 (3956)
T ss_pred HHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---cCCceeeecchh-------hcccCCC
Confidence 999999999999999999999999999999999999999987654433211 111111111110 0011111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+......++++++|+++.+.|++|+.+.. .++.+|..|++++
T Consensus 3229 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~ 3307 (3956)
T PRK12467 3229 NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGCLV 3307 (3956)
T ss_pred CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence 122345678999999999999999999999999999999999999999999999999999999974 6899999999999
Q ss_pred EcCC--CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+. +++..+++. +.++++|++.++|++++.+.+.. ...++++||.+++||+++++++
T Consensus 3308 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~----------~~~~~~~lr~~~~gGe~~~~~~ 3367 (3956)
T PRK12467 3308 VRDNDLWDPEELWQA----------IHAHRISIACFPPAYLQQFAEDA----------GGADCASLDIYVFGGEAVPPAA 3367 (3956)
T ss_pred ECCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhcc----------cccCCCCceEEEEecCCCCHHH
Confidence 9985 788999998 88999999999999999887641 1235788999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.++|.+.+ +++++|.||+||+++.++..
T Consensus 3368 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 3396 (3956)
T PRK12467 3368 FEQVKRKLKPRGLTNGYGPTEAVVTVTLW 3396 (3956)
T ss_pred HHHHHHhCCCCEEEeCcccchhEeeeEEE
Confidence 99999887 68999999999999766543
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=318.71 Aligned_cols=308 Identities=21% Similarity=0.315 Sum_probs=239.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC---------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (359)
+|+.+.|.++++.+|+++|+++. .+.+||+||.++++++|+.|.+ . +++||+|
T Consensus 21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~-~~~gd~V 82 (631)
T PRK07769 21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-----------------V-TKPGDRV 82 (631)
T ss_pred CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-----------------h-cCCCCEE
Confidence 36788999999999999999863 2579999999999999999987 4 7999999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeec-CCCCC--HHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC----CceeccC
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP 144 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~ 144 (359)
+++++|++++++++|||+++|++++|+ ++..+ .+++.+++++++++++|++.+..+.+.......+ .....+.
T Consensus 83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (631)
T PRK07769 83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD 162 (631)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence 999999999999999999999999999 45554 6789999999999999999876655544322211 1111111
Q ss_pred CCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhH
Q 018211 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 224 (359)
.... . . . .........++++++|+|||||||.||||+++|.++..++......+++.++|+++..+|++|.+
T Consensus 163 ~~~~---~--~-~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 163 AVPD---E--V-G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred cccc---c--c-c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence 1110 0 0 0 00011234568999999999999999999999999998888878888889999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEcCC--C--ChhHHHHHHHhhcCCCCCCCCCcc---eeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 225 GLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAI---TAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 225 ~~~~~~~~~l~~G~~i~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~v---t~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
|+.. ++.+++.|+++++.+. + ++..+++. +.++++ +++..+|.++..+..... ... ...
T Consensus 235 gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~p~~~~~l~~~~~-~~~--~~~ 300 (631)
T PRK07769 235 GLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRE----------LARKPGGTGGTFSAAPNFAFEHAAARG-LPK--DGE 300 (631)
T ss_pred hhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHH----------HHhhccccCceEeeCCchHHHHHHhhc-cch--hcc
Confidence 9965 5666778999988752 4 78888888 666665 788999998877654210 000 000
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHh---CC---cccccccCCcCcccccccc
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~TE~g~~~~~~~ 348 (359)
...++++||.+++||+++++++.++|.+.| |+ .+++.||+||++++++..+
T Consensus 301 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 357 (631)
T PRK07769 301 PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTP 357 (631)
T ss_pred cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccC
Confidence 124688999999999999999999999987 33 5999999999987666543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=307.96 Aligned_cols=309 Identities=24% Similarity=0.317 Sum_probs=247.8
Q ss_pred HHHHHHc-CCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHH
Q 018211 4 FKAAYKK-GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (359)
Q Consensus 4 ~~~l~~~-a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~ 82 (359)
.+.+.++ ++.+|+++|+++++..+||.||.++++++|..|.+ .|+++|++|+++++|+++++
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~-----------------~g~~~g~~v~l~~~~~~~~~ 69 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRR-----------------LGVKREERVLLLMLDGVDFP 69 (508)
T ss_pred HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHH
Confidence 3455555 57799999999999999999999999999999998 69999999999999999999
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc-eeccCCCCC--CCCcccccc-c
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPN--VSSETTVFD-Q 158 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~-~ 158 (359)
++++||+++|++++|+++..+.+++.++++.+++++++++....+.+.+.....+.. .++...... ......... .
T Consensus 70 ~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (508)
T TIGR02262 70 IAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATE 149 (508)
T ss_pred HHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcC
Confidence 999999999999999999999999999999999999999987766655543332211 111111100 000000000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH-HHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
..........++++++|+|||||||.||+|.++|+++...+.. ....++++++|+++...|++|..++...++.++..|
T Consensus 150 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G 229 (508)
T TIGR02262 150 SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVG 229 (508)
T ss_pred CCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcC
Confidence 0111122344689999999999999999999999999887765 455678889999999999999999877788889999
Q ss_pred cEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCC
Q 018211 238 ATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP 316 (359)
Q Consensus 238 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~ 316 (359)
+++++.+. +++..+++. ++++++|.+.++|.++..+..... ......+++|.+++||++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~~~~~~~--------~~~~~~~~l~~~~~~G~~l~ 291 (508)
T TIGR02262 230 ATTVLMGERPTPDAVFDR----------LRRHQPTIFYGVPTLYAAMLADPN--------LPAEDQVRLRLCTSAGEALP 291 (508)
T ss_pred ceEEEeCCCCCHHHHHHH----------HHHHCCcEEecchHHHHHHhcCcc--------ccccccccceeEEEcCCCCC
Confidence 99998764 688889988 788999999999999988776421 11224578999999999999
Q ss_pred HHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 317 LPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 317 ~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++.+.|.+.+|+++++.||+||+|+++..+
T Consensus 292 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 322 (508)
T TIGR02262 292 AEVGQRWQARFGVDIVDGIGSTEMLHIFLSN 322 (508)
T ss_pred HHHHHHHHHHhCCchhhCccccccCceeecC
Confidence 9999999999999999999999999765543
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=339.71 Aligned_cols=310 Identities=24% Similarity=0.347 Sum_probs=253.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeC-CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~-~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
++.+.+.++++.+|+++|+++. ++++||+||.++++++|+.|.+ ++++||+|+++++|+++
T Consensus 616 ~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~------------------~~~~g~~V~i~~~n~~~ 677 (1146)
T PRK08633 616 PLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR------------------ELKDEENVGILLPPSVA 677 (1146)
T ss_pred CHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH------------------hCCCCCeEEEECCCchH
Confidence 5678888999999999999974 6899999999999999999986 58999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhh--hcC--CceeccCCCCC-CCCcccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS--KSG--AKFSLIPPVPN-VSSETTV 155 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~-~~~~~~~ 155 (359)
++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+..... ..+ ........... .......
T Consensus 678 ~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1146)
T PRK08633 678 GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL 757 (1146)
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHH
Confidence 999999999999999999999999999999999999999999876655442110 011 11111111100 0000000
Q ss_pred cc---c--chh---hh--cCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHH
Q 018211 156 FD---Q--SQA---EK--MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225 (359)
Q Consensus 156 ~~---~--~~~---~~--~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 225 (359)
.. . .+. .. .....++|+++|+|||||||.||||.++|+++..++......++..++|++++.+|++|..+
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 837 (1146)
T PRK08633 758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG 837 (1146)
T ss_pred HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence 00 0 000 00 13446789999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q 018211 226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (359)
Q Consensus 226 ~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+...++.++..|+++++.+ .++++.+++. ++++++|++..+|++++.+.+... ..+.++++
T Consensus 838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~ 899 (1146)
T PRK08633 838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKL----------VAKHRATILLGTPTFLRLYLRNKK--------LHPLMFAS 899 (1146)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccc--------cCcccCCC
Confidence 9877889999999999876 4788899988 889999999999999998887521 22346789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 305 l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+|.+++||+++++++.+++++.+|.++++.||+||++++++..
T Consensus 900 lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 942 (1146)
T PRK08633 900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN 942 (1146)
T ss_pred eeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence 9999999999999999999999999999999999998876544
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=310.24 Aligned_cols=301 Identities=19% Similarity=0.265 Sum_probs=243.3
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.+. ++++|+.++++++||.||.++++++|..|.++ .|+++|++|+++++|++++
T Consensus 6 ~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~----------------~~~~~~~~V~i~~~n~~~~ 67 (529)
T PRK07867 6 TVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRAR----------------LDPTRPPHVGVLLDNTPEF 67 (529)
T ss_pred cHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCCHHH
Confidence 56777877775 78999999999999999999999999999983 2789999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccc--cc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--QS 159 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (359)
+++++||+++|++++|+++..+.+++.++++++++++++++++..+.+..... ......+.. .. ..+... ..
T Consensus 68 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~---~~~~l~~~~~ 141 (529)
T PRK07867 68 SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDP--GVRVINVDS-PA---WADELAAHRD 141 (529)
T ss_pred HHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhcc--CceEEEecc-cc---HHHHhcccCC
Confidence 99999999999999999999999999999999999999999877665544321 111111111 00 000000 00
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++++++|+|||||||.||+|+++|.++..........++++++|+++..+|++|..+++..++.++..|++
T Consensus 142 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~ 221 (529)
T PRK07867 142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGAS 221 (529)
T ss_pred CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCce
Confidence 01112234568999999999999999999999999998888888888999999999999999999998778888999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.+++..+++. ++++++|++.++|+.+..++...+.. ....+++|. ++||+.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~ll~~~~~~--------~~~~~~lr~-~~gg~~~~~~~ 282 (529)
T PRK07867 222 IALRRKFSASGFLPD----------VRRYGATYANYVGKPLSYVLATPERP--------DDADNPLRI-VYGNEGAPGDI 282 (529)
T ss_pred EEecCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCCcc--------cccccceEE-EecCCCChHHH
Confidence 999999999999998 78899999999999999887653211 112356885 46888887765
Q ss_pred HHHHHHHhCCcccccccCCcCcccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
++|.+.+|.++++.||+||+++++..
T Consensus 283 -~~~~~~~g~~l~~~YG~TE~~~~~~~ 308 (529)
T PRK07867 283 -ARFARRFGCVVVDGFGSTEGGVAITR 308 (529)
T ss_pred -HHHHHHhCCcEEEeeccccccccccc
Confidence 67777889999999999999876553
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=309.63 Aligned_cols=311 Identities=22% Similarity=0.332 Sum_probs=244.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.+.++++|+++|+.++++.+||.||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~~~~v~v~~~n~~~ 65 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIA-----------------QGLGPGDHVGIYARNRIE 65 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence 578999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCCCCC------Cc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS------SE 152 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~ 152 (359)
++++++|++++|++++|+++.++.+++.++++++++++++++.+....+.++....... .+.+....... ..
T Consensus 66 ~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (533)
T PRK07798 66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDY 145 (533)
T ss_pred HHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccH
Confidence 99999999999999999999999999999999999999999987766665553332211 11121111000 01
Q ss_pred ccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---------hcc------CCCceEEEe
Q 018211 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---------WEY------TSADQFLHC 217 (359)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---------~~~------~~~d~~l~~ 217 (359)
.+................+.++|+|||||||.||+|+++|.++.......... ... ..+++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 11111101111111223456799999999999999999999987655432221 111 467899999
Q ss_pred cCchhhHHHHHHHHHhhhcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHH-HHhhhhhhhHHH
Q 018211 218 LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR-LIQGYEAMDTEL 294 (359)
Q Consensus 218 ~pl~h~~~~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~-l~~~~~~~~~~~ 294 (359)
.|++|..+++ .++.+++.|+++++.+ .+++..+++. ++++++|.+..+|..+.. +.....
T Consensus 226 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~~------ 288 (533)
T PRK07798 226 PPLMHGAGQW-AAFAALFSGQTVVLLPDVRFDADEVWRT----------IEREKVNVITIVGDAMARPLLDALE------ 288 (533)
T ss_pred cchhhhhhHH-HHHHHHhcCceEEEecCCCcCHHHHHHH----------HHHhCCeEEEechHHHHHHHHHHhc------
Confidence 9999999996 6889999999999999 7899999999 788999999999877654 333211
Q ss_pred HHHHHhhhccceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 295 ~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
.....+++++|.+++||+++++++.++|.+.+ +.++++.||+||+|.+...
T Consensus 289 -~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 340 (533)
T PRK07798 289 -ARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSG 340 (533)
T ss_pred -ccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccccccc
Confidence 11234678999999999999999999999988 8899999999999765544
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=316.86 Aligned_cols=307 Identities=18% Similarity=0.191 Sum_probs=235.5
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
|+.+.+.++ .+|+++|+++.+ +++||+||.+++.++|..|.+ +|+++||+|+++++
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~ 147 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-----------------LGVGPGDRVAAYLP 147 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 455555543 579999999743 689999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcCC--ceeccCC
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP 145 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~ 145 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.......+. ..+.+..
T Consensus 148 n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 227 (655)
T PRK03584 148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPY 227 (655)
T ss_pred CCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEec
Confidence 9999999999999999999999999999999999999999999997643 2223333222221 1222221
Q ss_pred CCC---------CCCcccccc--cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH-HHHHHHHhhccCCCce
Q 018211 146 VPN---------VSSETTVFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSADQ 213 (359)
Q Consensus 146 ~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d~ 213 (359)
... .....+... ............+++++|+|||||||.||||+++|.+++. ........+++.++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 307 (655)
T PRK03584 228 LGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDR 307 (655)
T ss_pred CCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCE
Confidence 110 000001100 0001111234568999999999999999999999998764 4555566678889999
Q ss_pred EEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 214 ~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+++..++.|..+. .++.+|+.|+++++.+. +++..+++. ++++++|++..+|++++.+.+....
T Consensus 308 ~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 375 (655)
T PRK03584 308 FFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDL----------AAEEGVTVFGTSAKYLDACEKAGLV 375 (655)
T ss_pred EEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH----------HHHHCCEEEEcCHHHHHHHHhcCCC
Confidence 9999999987654 36788999999999763 578889988 8889999999999999988764110
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHh--CCcccccccCCcCccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~TE~g~~~~ 345 (359)
.....++++||.+++||+++++++.++|.+.+ ++++++.||+||+++.+.
T Consensus 376 ------~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~ 427 (655)
T PRK03584 376 ------PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFV 427 (655)
T ss_pred ------ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccc
Confidence 11235678999999999999999999999988 478999999999876443
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=310.14 Aligned_cols=310 Identities=19% Similarity=0.228 Sum_probs=247.5
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|++++++.+||+||.+++.++|..|.+ .|+++||+|+++++|+++
T Consensus 10 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~n~~~ 72 (540)
T PRK06164 10 DTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAA-----------------QGVRRGDRVAVWLPNCIE 72 (540)
T ss_pred CCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCcHH
Confidence 478899999999999999999988999999999999999999998 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhc--CC-ceeccC-CCCCCCC
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS--GA-KFSLIP-PVPNVSS 151 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~--~~-~~~~~~-~~~~~~~ 151 (359)
++++++||+++|++++|+++..+.+++.++++++++++++++.+.. +.+....... .. ....+. .......
T Consensus 73 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (540)
T PRK06164 73 WVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPA 152 (540)
T ss_pred HHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCC
Confidence 9999999999999999999999999999999999999999986542 2222211110 01 111111 0000000
Q ss_pred cc-----cccccc-hh----hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCch
Q 018211 152 ET-----TVFDQS-QA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221 (359)
Q Consensus 152 ~~-----~~~~~~-~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~ 221 (359)
.. ...... .. .......++++++++|||||||.||+|.++|.++..++......+++..+|++++.+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~ 232 (540)
T PRK06164 153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFC 232 (540)
T ss_pred CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCch
Confidence 00 000000 00 001223468899999999999999999999999999988888888999999999999999
Q ss_pred hhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhh
Q 018211 222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (359)
Q Consensus 222 h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 301 (359)
|.+|+. .++.++..|+++++.+.+++..+++. ++++++|+++++|.++..+.+. .....+
T Consensus 233 ~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~l~~l~~~---------~~~~~~ 292 (540)
T PRK06164 233 GVFGFS-TLLGALAGGAPLVCEPVFDAARTARA----------LRRHRVTHTFGNDEMLRRILDT---------AGERAD 292 (540)
T ss_pred hHHHHH-HHHHHHhcCceEEecCCCCHHHHHHH----------HHHhCCeeecCCHHHHHHHHHh---------hcccCC
Confidence 999995 68999999999999999999999998 8889999999999999998875 122346
Q ss_pred hccceEEEecC-CCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 302 AKQLRLMMCGS-SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 302 ~~~l~~i~~~G-~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+++++.+..+| .+.+.++.+++.+. |+++++.||+||++++++...
T Consensus 293 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~ 339 (540)
T PRK06164 293 FPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP 339 (540)
T ss_pred CcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence 78899887766 55556666666654 999999999999988765543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=344.91 Aligned_cols=306 Identities=15% Similarity=0.159 Sum_probs=243.1
Q ss_pred hHHHHHHHcCCCCCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 2 EVFKAAYKKGSMARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
++.+.+.++++.+|+++|+++ +++++||+||.++++++|..|.+ .|+++|++|+
T Consensus 237 ~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-----------------~gv~~g~~V~ 299 (1389)
T TIGR03443 237 AIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-----------------TGIKRGDVVM 299 (1389)
T ss_pred cHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEE
Confidence 467889999999999999985 35789999999999999999999 6999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---HHHHHHHhhh-c----CCceeccC
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---REVLQNVASK-S----GAKFSLIP 144 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~-~----~~~~~~~~ 144 (359)
++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++... ...+...... . ......+.
T Consensus 300 i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1389)
T TIGR03443 300 IYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQ 379 (1389)
T ss_pred EEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEec
Confidence 99999999999999999999999999999999999999999999999987542 1111111110 0 00001111
Q ss_pred CCCCCC-----Cc-ccccccc----hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceE
Q 018211 145 PVPNVS-----SE-TTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF 214 (359)
Q Consensus 145 ~~~~~~-----~~-~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~ 214 (359)
...... .. .+..... .........++++++|+|||||||.||||+++|+++.+.+......+++.++|++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 459 (1389)
T TIGR03443 380 DDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF 459 (1389)
T ss_pred ccccccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 000000 00 0000000 0011122457899999999999999999999999999998888888999999999
Q ss_pred EEecCchhhHHHHHHHHHhhhcCcEEEEcCCC---ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhh
Q 018211 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291 (359)
Q Consensus 215 l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 291 (359)
+...|++|+.++. .++.+|+.|+++++++.. ++..+++. ++++++|++.++|++++.+....
T Consensus 460 ~~~~~~~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~---- 524 (1389)
T TIGR03443 460 TMLSGIAHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEW----------MAKYGATVTHLTPAMGQLLSAQA---- 524 (1389)
T ss_pred EEecCceecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcc----
Confidence 9999999998875 689999999999998753 56677777 88899999999999999886531
Q ss_pred HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 292 ~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
...+++||.+++||+++++...+++.+.. +++++|.||+||++..++.
T Consensus 525 -------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 573 (1389)
T TIGR03443 525 -------TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSY 573 (1389)
T ss_pred -------cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEE
Confidence 13478899999999999999999998876 7999999999999876554
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=312.01 Aligned_cols=311 Identities=22% Similarity=0.342 Sum_probs=248.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC---CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
+|+.+.|.+.+..+|+++|+.++ ++.+||.||.++++++|..|.+. .|+++||+|+++++|
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~gd~V~~~~~n 73 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDE----------------LGITGDQRVGSMMYN 73 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence 57889999999999999999874 37999999999999999999852 599999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-c-eeccCCCCC-------
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPVPN------- 148 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~------- 148 (359)
+++++++++||.++|++++++++..+.+++.++++.+++++++++....+.+.+....... . ++.......
T Consensus 74 ~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 153 (576)
T PRK05620 74 CAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHM 153 (576)
T ss_pred CHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhcc
Confidence 9999999999999999999999999999999999999999999998777666655443321 1 111111000
Q ss_pred -----CCCcccccccch-hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHH--HHhhccCCCceEEEecCc
Q 018211 149 -----VSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPL 220 (359)
Q Consensus 149 -----~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl 220 (359)
+.......+... ........++++++++|||||||.||||.++|.++....... ...+++..+|++++.+|+
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl 233 (576)
T PRK05620 154 PEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPI 233 (576)
T ss_pred ccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCCh
Confidence 000000100000 011223456899999999999999999999999987654432 334678889999999999
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 221 HHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 221 ~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
+|.+++. ..+.++..|+++++.+ .+++..+++. ++++++|++.++|.++..++.+... ..
T Consensus 234 ~h~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~ 294 (576)
T PRK05620 234 YHVLSWG-VPLAAFMSGTPLVFPGPDLSAPTLAKI----------IATAMPRVAHGVPTLWIQLMVHYLK--------NP 294 (576)
T ss_pred HHhhhhH-HHHHHHhcCceEEecCCCCCHHHHHHH----------HHHhcCceeeecCHHHHHHHHHhhc--------cC
Confidence 9999985 4778899999999886 5788999888 8889999999999999988764211 11
Q ss_pred hhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.+..++|.+++||+++++++.++|.+.+|+++++.||+||++.++..
T Consensus 295 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 341 (576)
T PRK05620 295 PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTV 341 (576)
T ss_pred cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceee
Confidence 22357999999999999999999999899999999999999976543
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=308.91 Aligned_cols=311 Identities=25% Similarity=0.302 Sum_probs=248.4
Q ss_pred hHHHHHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.|.+.++.+|+++|+++ .++.+||.||.++++++|..|.+ .|+++||+|+++++|++
T Consensus 19 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~~ 81 (558)
T PRK12583 19 TIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLA-----------------LGVQPGDRVGIWAPNCA 81 (558)
T ss_pred cHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCh
Confidence 678899999999999999987 45789999999999999999998 79999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhc-------------CC--c
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS-------------GA--K 139 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-------------~~--~ 139 (359)
++++++||++++|++++++++..+.+++.++++++++++++++.... ..+....... +. .
T Consensus 82 ~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
T PRK12583 82 EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161 (558)
T ss_pred HHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence 99999999999999999999999999999999999999999875421 1222211110 00 0
Q ss_pred eeccCCC--CCCCCcccccccc-------hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCC
Q 018211 140 FSLIPPV--PNVSSETTVFDQS-------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210 (359)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~ 210 (359)
....... ............. .........++++++++|||||||.||+|.++|.++..++......+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 241 (558)
T PRK12583 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE 241 (558)
T ss_pred EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence 0000000 0000000000000 001112335688999999999999999999999999998888888889999
Q ss_pred CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 211 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+|++++..|++|..+....++.++..|++++++. .+++..+++. ++++++|++.++|+++..++....
T Consensus 242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~- 310 (558)
T PRK12583 242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA----------VEEERCTALYGVPTMFIAELDHPQ- 310 (558)
T ss_pred CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcccc-
Confidence 9999999999999999888999999999999754 5788888888 888999999999999988776522
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC-CcccccccCCcCccccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~TE~g~~~~~~ 347 (359)
....+++++|.+++||+++++++.+++.+.++ .++++.||+||+++++..+
T Consensus 311 -------~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 362 (558)
T PRK12583 311 -------RGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQT 362 (558)
T ss_pred -------ccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceecc
Confidence 12245789999999999999999999999886 5799999999999876654
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=310.41 Aligned_cols=310 Identities=20% Similarity=0.290 Sum_probs=246.0
Q ss_pred ChHHHHHHHcCCCCCCceEEee--C--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRA--D--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~--~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+++.+.|.++++.+|+++++.. + .+++||.||.++++++|..|.+ .|+++||+|+++++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-----------------~g~~~gd~v~i~~~ 72 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-----------------DGIKLGDRVATIAW 72 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 4678899999999999999984 2 3789999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceec-cCCCCCCCC---
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSL-IPPVPNVSS--- 151 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~--- 151 (359)
|+++++++++|++++|++++|+++.++.+++.++++.++++.++++.++.+.+.+....... ...+ +........
T Consensus 73 ~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (542)
T PRK06018 73 NTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTL 152 (542)
T ss_pred CchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCc
Confidence 99999999999999999999999999999999999999999999998877776665443321 1111 111100000
Q ss_pred -----cccccccch-hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHH-H-HHHHHHHhhccCCCceEEEecCchhh
Q 018211 152 -----ETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID-A-QVQMLTEAWEYTSADQFLHCLPLHHV 223 (359)
Q Consensus 152 -----~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~-~~~~~~~~~~~~~~d~~l~~~pl~h~ 223 (359)
......... ........++++++|+|||||||.||+|.+||.+.+ . ........+++..+|+++...|++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~ 232 (542)
T PRK06018 153 KNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHA 232 (542)
T ss_pred cccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHH
Confidence 000000000 001123455789999999999999999999999743 2 22233456678899999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhh
Q 018211 224 HGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (359)
Q Consensus 224 ~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (359)
.++.. .+.++..|+++++.. .+++..+++. ++++++|++.++|+++..+.+..... ..++
T Consensus 233 ~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~~--------~~~~ 293 (542)
T PRK06018 233 NSWGI-AFSAPSMGTKLVMPGAKLDGASVYEL----------LDTEKVTFTAGVPTVWLMLLQYMEKE--------GLKL 293 (542)
T ss_pred hhhHH-HHhhhhcCceEEccCcCCCHHHHHHH----------HHhcCCceeecCcHHHHHHHhccccc--------CCCc
Confidence 88754 567789999998875 5788888888 88899999999999999988753211 2346
Q ss_pred ccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 303 ~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++|.++++|+++++++.++|++ +|+++++.||+||++.++..+
T Consensus 294 ~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~ 337 (542)
T PRK06018 294 PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLA 337 (542)
T ss_pred ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccc
Confidence 78999999999999999999999 899999999999999876544
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=307.33 Aligned_cols=310 Identities=22% Similarity=0.327 Sum_probs=243.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+.++++.+||.||.++++++|..|.+ .|+.+||+|+++++|++++
T Consensus 22 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~~~~ 84 (541)
T TIGR03205 22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLR-----------------AGYGKDASVALYLGNTPDH 84 (541)
T ss_pred CHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChHH
Confidence 56788999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc--HHHHHHHhhhcCC-ceeccCCCCC--C-------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY--REVLQNVASKSGA-KFSLIPPVPN--V------- 149 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~--~------- 149 (359)
+++++|++++|++++|+++..+.+++.++++.++++++++++.. .+...+....... ..++...... .
T Consensus 85 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (541)
T TIGR03205 85 PINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPI 164 (541)
T ss_pred HHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEeccccccccccccccc
Confidence 99999999999999999999999999999999999999988631 1112111111111 1111111000 0
Q ss_pred CC------ccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh------ccCCCceEEE
Q 018211 150 SS------ETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EYTSADQFLH 216 (359)
Q Consensus 150 ~~------~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~d~~l~ 216 (359)
.. ....... ..........++++++++|||||||.||+|.++|+++....... ..+ .....+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~ 243 (541)
T TIGR03205 165 PADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVIC 243 (541)
T ss_pred CCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEE
Confidence 00 0000000 00011123456899999999999999999999999987654422 221 2234578999
Q ss_pred ecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHH
Q 018211 217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296 (359)
Q Consensus 217 ~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 296 (359)
..|++|..++...++.++..|+++++...+++..+++. +.++++|++.++|+++..+.+...
T Consensus 244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~-------- 305 (541)
T TIGR03205 244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD----------IEEKRATVFPGVPTMWIALANDPS-------- 305 (541)
T ss_pred eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCeEeechHHHHHHHHhCcc--------
Confidence 99999999988778889999999999988899999999 888999999999999998876421
Q ss_pred HHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 297 ~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
....+++++|.++.||+++++++.+++.+.+|.++++.||+||++++++..
T Consensus 306 ~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 356 (541)
T TIGR03205 306 LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGH 356 (541)
T ss_pred ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccC
Confidence 122456789999999999999999999988899999999999999876554
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=306.17 Aligned_cols=310 Identities=24% Similarity=0.286 Sum_probs=246.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
++.+++.+.++++|+++|+.+.+ +.+||.||.++++++|..|.+ +|+++||+|+++++
T Consensus 8 ~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-----------------~g~~~~~~v~i~~~ 70 (517)
T PRK08008 8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-----------------LGIRKGDKVALHLD 70 (517)
T ss_pred cHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 57889999999999999998753 789999999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--CceeccCCCC--C---C
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVP--N---V 149 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~---~ 149 (359)
|+++++++++||+++|++++++++..+.+++.+++++++++.++++.+..+.+.++..... .+...+.... . .
T Consensus 71 n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (517)
T PRK08008 71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGV 150 (517)
T ss_pred CCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccc
Confidence 9999999999999999999999999999999999999999999999887776665543321 1111111110 0 0
Q ss_pred CCcccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHH
Q 018211 150 SSETTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 150 ~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 227 (359)
........... ........++++++|+|||||||.||+|.++|.++............+..++++++.+|++|..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (517)
T PRK08008 151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC 230 (517)
T ss_pred cCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence 00000000000 0112233568999999999999999999999999986554444444577899999999999988877
Q ss_pred HHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceE
Q 018211 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (359)
..++.++..|+++++.+.++++.+++. ++++++|++.++|.+++.+........ ...++++.
T Consensus 231 ~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~--------~~~~~l~~ 292 (517)
T PRK08008 231 TAAMAAFSAGATFVLLEKYSARAFWGQ----------VCKYRATITECIPMMIRTLMVQPPSAN--------DRQHCLRE 292 (517)
T ss_pred HHHHHHHhcCcEEEEccccCHHHHHHH----------HHHcCCcEEechHHHHHHHHhCCCccc--------ccccccee
Confidence 778899999999999999999999999 888999999999999998876532111 12356787
Q ss_pred EEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+.++ ++++++..+.|.+.+|+++++.||+||+++.++..
T Consensus 293 ~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 331 (517)
T PRK08008 293 VMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGD 331 (517)
T ss_pred eEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccC
Confidence 7775 47899999999998999999999999998755443
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=307.41 Aligned_cols=307 Identities=18% Similarity=0.235 Sum_probs=244.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++ |+++|++++++.+||.||.++++++|..|.+ .|+++|++|+++++|++++
T Consensus 26 ~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-----------------~g~~~g~~V~v~~~n~~~~ 86 (536)
T PRK10946 26 PLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRR-----------------QGIKPGDTALVQLGNVAEF 86 (536)
T ss_pred cHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCChHHH
Confidence 56788888886 9999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-CceeccCCCCCCCCcccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETTV 155 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (359)
+++++||+++|++++++.+....+++..+++++++++++++.+.. .....+....+ ..................
T Consensus 87 ~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 166 (536)
T PRK10946 87 YITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDA 166 (536)
T ss_pred HHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHH
Confidence 999999999999988887778888999999999999999876431 12222222221 111111111111011111
Q ss_pred ccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHHHh
Q 018211 156 FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAP 233 (359)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~~ 233 (359)
... ..........++++++++|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 246 (536)
T PRK10946 167 INHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGV 246 (536)
T ss_pred hhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHH
Confidence 100 0011122345689999999999999999999999999999988888889999999999999999888753 46788
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.+++..+++. ++++++|++.++|.++..+.+.... ......++++|.+++||+
T Consensus 247 l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~ 310 (536)
T PRK10946 247 FLAGGTVVLAPDPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQAIAE------GGSRAQLASLKLLQVGGA 310 (536)
T ss_pred hhcCcEEEECCCCCHHHHHHH----------HHHhCCcEEEeChHHHHHHHhhhcc------cCccccccceeEEEECCC
Confidence 999999999998999998888 8889999999999999998765211 111234678999999999
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCccc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGCTK 343 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~ 343 (359)
++++++.+.|.+.+|+++++.||+||++..
T Consensus 311 ~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~ 340 (536)
T PRK10946 311 RLSETLARRIPAELGCQLQQVFGMAEGLVN 340 (536)
T ss_pred CCCHHHHHHHHHhcCCeEEEeeccccccee
Confidence 999999999999899999999999997543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=309.25 Aligned_cols=308 Identities=19% Similarity=0.280 Sum_probs=244.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeC----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
++.+.|...++.+|+++++.+. .+.+||.||.++++++|+.|.+ .|+++||+|+++++|
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~~d~v~i~~~~ 73 (539)
T PRK07008 11 LISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-----------------LGVEPGDRVGTLAWN 73 (539)
T ss_pred CHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence 3567888889999999888742 2689999999999999999999 699999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCce--eccCCCCCC------
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNV------ 149 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------ 149 (359)
+++++++++||+++|++++|+++.++.+++.++++.+++++++++.++.+.+.++........ +.+......
T Consensus 74 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (539)
T PRK07008 74 GYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTP 153 (539)
T ss_pred cHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcc
Confidence 999999999999999999999999999999999999999999999887666655443322211 111111000
Q ss_pred -CCccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH--HHHHhhccCCCceEEEecCchhhHH
Q 018211 150 -SSETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ--MLTEAWEYTSADQFLHCLPLHHVHG 225 (359)
Q Consensus 150 -~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~~ 225 (359)
....+.... ..........++++++++|||||||.||+|++||.+++.+.. .....++..++|+++...|++|..+
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 233 (539)
T PRK07008 154 LLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA 233 (539)
T ss_pred cccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh
Confidence 000000000 011112234568899999999999999999999999875432 2334567888999999999999887
Q ss_pred HHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q 018211 226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (359)
Q Consensus 226 ~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+. .++.++..|+++++.+ .++++.+++. ++++++|++.++|+++..+.+.... ...++++
T Consensus 234 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~ 294 (539)
T PRK07008 234 WG-LPYSAPLTGAKLVLPGPDLDGKSLYEL----------IEAERVTFSAGVPTVWLGLLNHMRE--------AGLRFST 294 (539)
T ss_pred HH-HHHHHHhcCceEEEecCCcCHHHHHHH----------HHHcCCEEEEechHHHHHHHhcccc--------cCCCccc
Confidence 64 3577899999999874 6788999888 8889999999999999998875321 2245789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccc
Q 018211 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 305 l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
+|.++++|+++++++.++|.+.+|+++++.||+||+++.+.
T Consensus 295 l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 335 (539)
T PRK07008 295 LRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGT 335 (539)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccce
Confidence 99999999999999999999989999999999999997554
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=313.04 Aligned_cols=304 Identities=19% Similarity=0.269 Sum_probs=233.3
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC---------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (359)
||+.+.+.++++.+|+++|+++. .+.+||+||.++++++|+.|.+ . +++||+|
T Consensus 34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-----------------~-~~~gd~V 95 (612)
T PRK12476 34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-----------------V-AGPGDRV 95 (612)
T ss_pred CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-----------------h-cCCCCEE
Confidence 47788899999999999999862 1489999999999999999987 4 8999999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeec-CCCCC--HHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC----CceeccC
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP 144 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~ 144 (359)
+++++|+++++++++||+++|++++|+ ++.++ .+++.+++++++++++|++....+.+........ ...+.++
T Consensus 96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (612)
T PRK12476 96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID 175 (612)
T ss_pred EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence 999999999999999999999999999 56666 7899999999999999999876665544433221 1122221
Q ss_pred CCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc-cCCCceEEEecCchhh
Q 018211 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHCLPLHHV 223 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~ 223 (359)
.... . ...........++++++|+|||||||.||||.++|+++..++......++ +.+++++++++|++|.
T Consensus 176 ~~~~---~-----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~ 247 (612)
T PRK12476 176 AIPD---S-----AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD 247 (612)
T ss_pred cccc---c-----ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence 1110 0 00001112345689999999999999999999999999988777666677 6788999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEcC--CC--ChhHHHHHHHhhcCCCCCC--CCCcceeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 224 HGLFNALLAPLYAGATVEFMP--KF--SVRGIWQRWRESYPVNGNR--AGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 224 ~~~~~~~~~~l~~G~~i~~~~--~~--~~~~~~~~~~~~~~~~~~i--~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
.++...++..+ .|++.++.. .+ ++..+++. + .++++|.+..+|+++..+....... ...
T Consensus 248 ~g~~~~~~~~~-~gg~~~~~~~~~~~~~p~~~~~~----------i~~~~~~~t~~~~~P~~~~~l~~~~~~~----~~~ 312 (612)
T PRK12476 248 MGLSMIGFPAV-YGGHSTLMSPTAFVRRPQRWIKA----------LSEGSRTGRVVTAAPNFAYEWAAQRGLP----AEG 312 (612)
T ss_pred cchHHHHHHHh-cCCeEEEECHHHHHHHHHHHHHH----------HhhhccCCeEEEeCCcHHHHHHHHhcCh----hhh
Confidence 99865444445 455554443 23 78888887 5 4589999999999988877531100 011
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHh---CC---cccccccCCcCcccccc
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEGCTKGRH 346 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~TE~g~~~~~ 346 (359)
...+++++| +++||+++++++.++|.+.| |+ ++++.||+||+++.++.
T Consensus 313 ~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~ 366 (612)
T PRK12476 313 DDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVAT 366 (612)
T ss_pred cCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeec
Confidence 223578899 99999999999999999987 54 48999999999865543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=302.35 Aligned_cols=275 Identities=33% Similarity=0.502 Sum_probs=233.0
Q ss_pred CCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHH
Q 018211 11 GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWF 90 (359)
Q Consensus 11 a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 90 (359)
++..++++|++++++++||.||.++++++|..|.. +|+|+++++|+++++++++||++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~----------------------~~~V~l~~~~~~~~~~~~la~~~ 67 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVAG----------------------ARRVAVLATPTLATVLAVVGALI 67 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhcc----------------------CCEEEEECCCCHHHHHHHHHHHh
Confidence 45569999999999999999999999999999964 69999999999999999999999
Q ss_pred hCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcCCCCCC
Q 018211 91 SGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE 170 (359)
Q Consensus 91 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
+|++++|+++..+.+++.++++++++++++++.+.. ..... ...+.. .... ........++
T Consensus 68 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~--~~~~~~--~~~~---------~~~~~~~~~~ 128 (471)
T PRK07787 68 AGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLP--HVPVRL--HARS---------WHRYPEPDPD 128 (471)
T ss_pred cCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccc--ceeeec--cccc---------cccCCCCCCC
Confidence 999999999999999999999999999999976310 00000 000000 0000 0011123568
Q ss_pred CcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhH
Q 018211 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250 (359)
Q Consensus 171 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~ 250 (359)
++++|+|||||||.||+|.++|.++..++......++..++|++++.+|++|..|++..++.++..|+++++.+.+++..
T Consensus 129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 208 (471)
T PRK07787 129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208 (471)
T ss_pred ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence 99999999999999999999999999998888888889999999999999999999888999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCc
Q 018211 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR 330 (359)
Q Consensus 251 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~ 330 (359)
+++. ++ +++|++..+|+++..+.+... ....++++|.++.||+++++++.++|.+.++.+
T Consensus 209 ~~~~----------i~-~~~t~~~~~P~~~~~l~~~~~---------~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~ 268 (471)
T PRK07787 209 YAQA----------LS-EGGTLYFGVPTVWSRIAADPE---------AARALRGARLLVSGSAALPVPVFDRLAALTGHR 268 (471)
T ss_pred HHHH----------Hh-hCceEEEcchHHHHHHHhCcc---------ccccccceeEEEECCCCCCHHHHHHHHHHcCCC
Confidence 9998 78 999999999999999886421 123567899999999999999999999989999
Q ss_pred ccccccCCcCcccccc
Q 018211 331 LLERYGMTEGCTKGRH 346 (359)
Q Consensus 331 v~~~YG~TE~g~~~~~ 346 (359)
+++.||+||+++.++.
T Consensus 269 ~~~~YG~tE~~~~~~~ 284 (471)
T PRK07787 269 PVERYGMTETLITLST 284 (471)
T ss_pred eecccCccccCcceec
Confidence 9999999999875443
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=306.16 Aligned_cols=309 Identities=15% Similarity=0.237 Sum_probs=240.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.+...++.+|+++|+++++.++||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~ 82 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAK-----------------RSIGPGSTVAVIAPNIPA 82 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence 357788889999999999999988999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhc--------C-CceeccCCCCCCC-
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS--------G-AKFSLIPPVPNVS- 150 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~- 150 (359)
++++++||+++|++++|+++..+.+++.++++.++++++++++...+...+..... . .....+.......
T Consensus 83 ~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (567)
T PLN02479 83 MYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK 162 (567)
T ss_pred HHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence 99999999999999999999999999999999999999999987655444332211 0 1111111100000
Q ss_pred -----------Ccccccccchh--hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEe
Q 018211 151 -----------SETTVFDQSQA--EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217 (359)
Q Consensus 151 -----------~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~ 217 (359)
...+....... ........+++++++|||||||.||||.+||.++..........+++..+|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (567)
T PLN02479 163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWT 242 (567)
T ss_pred ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence 00000000000 00112233467889999999999999999999988766665666788899999999
Q ss_pred cCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 218 ~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
.|++|..++...+...+..|.+++ ...+++..+++. ++++++|++..+|.++..+...... .
T Consensus 243 ~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~-------~ 304 (567)
T PLN02479 243 LPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSA----------IANYGVTHFCAAPVVLNTIVNAPKS-------E 304 (567)
T ss_pred cchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhhhhh-------c
Confidence 999999998654445566666654 457899999998 8899999999999999998765211 0
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccc
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
....+++++.++++|+++++.+.++|.+. +.++++.||+||+++.+.
T Consensus 305 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~ 351 (567)
T PLN02479 305 TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPST 351 (567)
T ss_pred ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceeccccccccccccc
Confidence 11246889999999999999999999875 999999999999975433
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=308.22 Aligned_cols=297 Identities=16% Similarity=0.246 Sum_probs=246.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.+.++.+|+++|+.+.++.+||.||.+++.++|..|.+ .|+++|++|+++++|+.++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~-----------------~g~~~~~~V~i~~~~~~~~ 63 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQK-----------------RILPKKSPIIVYGHMEPHM 63 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHH-----------------hCCCCCCeEEEEeCCCHHH
Confidence 57899999999999999999999999999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
+++++||+++|++++|+++.++.+++.++++..+++.++++.+....... ...+.+...... .......
T Consensus 64 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~ 132 (502)
T TIGR01734 64 LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQIITLSALEQA-----ETSGGPV 132 (502)
T ss_pred HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC------CceEEchHhhhh-----hhhcCCc
Confidence 99999999999999999999999999999999999999998764322111 111111100000 0000001
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||+|.++|.++...+......++...+++++...|++|..++. .++.++..|++++
T Consensus 133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 211 (502)
T TIGR01734 133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLH 211 (502)
T ss_pred cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEE
Confidence 111233568899999999999999999999999999888888888888999999999999999885 6889999999999
Q ss_pred EcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
+.+. .++..+++. +.++++|.+..+|.+++.++... ......+++++.++++|++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~p~~~~~~l~~~--------~~~~~~~~~l~~~~~~G~~~~~~ 273 (502)
T TIGR01734 212 CLDKDITNNFKLLFEE----------LPKTGLNVWVSTPSFVDMCLLDP--------NFNQENYPHLTHFLFCGEELPVK 273 (502)
T ss_pred EcCHHHhcCHHHHHHH----------HHHcCCeEEEEChhHHHHHHhcc--------ccccccCCcccEEEEcCCcCCHH
Confidence 9875 467888888 78899999999999998776541 11234578999999999999999
Q ss_pred HHHHHHHHh-CCcccccccCCcCccccc
Q 018211 319 VMQQWETIT-GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 319 ~~~~~~~~~-~~~v~~~YG~TE~g~~~~ 345 (359)
+.+++.+.+ ++++++.||+||+++.++
T Consensus 274 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~ 301 (502)
T TIGR01734 274 TAKALLERFPKATIYNTYGPTEATVAVT 301 (502)
T ss_pred HHHHHHHHCCCcEEEeCccCCcceEEEE
Confidence 999999988 899999999999986544
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=307.92 Aligned_cols=314 Identities=20% Similarity=0.282 Sum_probs=243.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|+.+.++.+||.||.++++++|+.|.+. .|+++||+|+++++|+++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~gi~~gd~V~i~~~n~~e 87 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQH----------------TDLVPGDRIAVQMPNVLQ 87 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHH
Confidence 3678889999999999999999889999999999999999999872 399999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCC----CCC--------
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP----VPN-------- 148 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------- 148 (359)
+++++|||+++|++++++++..+.+++.++++++++++++++....+.+................ .+.
T Consensus 88 ~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (562)
T PRK12492 88 YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNT 167 (562)
T ss_pred HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccc
Confidence 99999999999999999999999999999999999999999876544443322211100000000 000
Q ss_pred -------------CCC---ccccccc-ch-hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc---
Q 018211 149 -------------VSS---ETTVFDQ-SQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--- 207 (359)
Q Consensus 149 -------------~~~---~~~~~~~-~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--- 207 (359)
... ....... .. .........+++++|+|||||||.||||.++|+++..++......+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~ 247 (562)
T PRK12492 168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLG 247 (562)
T ss_pred ccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccc
Confidence 000 0000000 00 00112345578999999999999999999999999887766555442
Q ss_pred ------cCC-CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHH
Q 018211 208 ------YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279 (359)
Q Consensus 208 ------~~~-~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 279 (359)
+.. +++++..+|++|.+++...++..+..|.+.++.. .+++..+++. ++++++|++..+|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~ 317 (562)
T PRK12492 248 PDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKE----------LGKWRFSALLGLNTL 317 (562)
T ss_pred ccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHH----------HHHhCCceeeCcHHH
Confidence 222 3577899999999998766777788888777664 4678888888 889999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+..+.+... ....+++++|.+++||+++++++.+.|.+.+|+++++.||+||++++++.+.
T Consensus 318 ~~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 378 (562)
T PRK12492 318 FVALMDHPG--------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNP 378 (562)
T ss_pred HHHHHhCcC--------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecC
Confidence 999887532 1234578999999999999999999999988999999999999998766543
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=308.52 Aligned_cols=298 Identities=19% Similarity=0.239 Sum_probs=228.7
Q ss_pred Ch-HHHHHHHcCCCCCCceEEeeCC----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 1 ME-VFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 1 m~-i~~~l~~~a~~~p~~~ai~~~~----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
|| +.+.|.+.++.+|+++|+++.+ +++||+||.++++++|..|.+ + ++||+|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-----------------~--~~g~~V~l~~ 61 (525)
T PRK05851 1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-----------------R--DRPGAVGLVG 61 (525)
T ss_pred CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-----------------c--CCCCeEEEEc
Confidence 78 8899999999999999999875 889999999999999999988 4 7999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCC-------CCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN 148 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
+|+++++++++|++++|+++++++.. ...+++.++++++++++++++....+.+...... . .+.....
T Consensus 62 ~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~----~-~~~~~~~ 136 (525)
T PRK05851 62 EPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS----V-TVHDLAT 136 (525)
T ss_pred CCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc----c-ccccccc
Confidence 99999999999999999986543211 2234556678999999999987655444332111 0 0100000
Q ss_pred CCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccC-CCceEEEecCchhhHHHH
Q 018211 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT-SADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~~~~ 227 (359)
..............++++++|+|||||||.||||+++|.++...+......+++. ++|++++.+|++|.+++.
T Consensus 137 ------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 210 (525)
T PRK05851 137 ------AAHTNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA 210 (525)
T ss_pred ------cccccccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence 0000000011123568999999999999999999999999999988888888888 899999999999999996
Q ss_pred HHHHHhhhcCcEEEEcCC--C--ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 018211 228 NALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (359)
.++.+++.|+++++.+. + ++..+++. +.++++|++..+|.++..+.+... .....+++
T Consensus 211 -~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~p~~~~~~l~~~~~-------~~~~~~l~ 272 (525)
T PRK05851 211 -FLLTAALAGAPLWLAPTTAFSASPFRWLSW----------LSDSRATLTAAPNFAYNLIGKYAR-------RVSDVDLG 272 (525)
T ss_pred -HHHHHHHcCCeEEEcCHHHHHHCHHHHHHH----------HHHhCCeEEeCCcHHHHHHHHhhc-------cccCCCHH
Confidence 57889999999999873 4 56678887 788999987655554444433211 11224578
Q ss_pred cceEEEecCCCCCHHHHHHHHHH---hCC---cccccccCCcCcccccc
Q 018211 304 QLRLMMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEGCTKGRH 346 (359)
Q Consensus 304 ~l~~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~g~~~~~ 346 (359)
+||.+++||+++++++.++|.+. +|. ++++.||+||++..++.
T Consensus 273 ~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~ 321 (525)
T PRK05851 273 ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTV 321 (525)
T ss_pred HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEe
Confidence 89999999999999999999875 454 49999999999865543
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=308.99 Aligned_cols=310 Identities=25% Similarity=0.394 Sum_probs=242.8
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.+.+.+..+|+++|+++.++.+||.||.+++.++|..|.+ .|+++||+|+++++|++++
T Consensus 25 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~-----------------~gv~~gd~V~i~~~~~~~~ 87 (563)
T PRK06710 25 PLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQK-----------------LGVEKGDRVAIMLPNCPQA 87 (563)
T ss_pred cHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChHH
Confidence 57788889999999999999999999999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC-----------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS----------- 150 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (359)
++++|||+++|++++|+++..+.+++.++++.++++.+++++.....+.............+.......
T Consensus 88 ~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (563)
T PRK06710 88 VIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167 (563)
T ss_pred HHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchh
Confidence 999999999999999999999999999999999999999987655443332211111111110000000
Q ss_pred ------------Cc------ccccccchhh-hcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH-hhccC-
Q 018211 151 ------------SE------TTVFDQSQAE-KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYT- 209 (359)
Q Consensus 151 ------------~~------~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~- 209 (359)
.. .......... .......+++++++|||||||.||+|.++|+++..+...... .++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 247 (563)
T PRK06710 168 QKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKE 247 (563)
T ss_pred hcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCC
Confidence 00 0000000000 011123478999999999999999999999999765433322 23333
Q ss_pred CCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 210 ~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
.++++++..|++|.+++...++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+....
T Consensus 248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~ 317 (563)
T PRK06710 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA----------IKKHKVTLFPGAPTIYIALLNSPLL 317 (563)
T ss_pred CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcCCcc
Confidence 456889999999999987667778999999999998999999988 8889999999999999998875221
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
...+++++|.+++||+++++++.+++.+.+|+++++.||+||++++...
T Consensus 318 --------~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 366 (563)
T PRK06710 318 --------KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHS 366 (563)
T ss_pred --------ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCcccccc
Confidence 1234678999999999999999999999889999999999999876543
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=303.40 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=236.3
Q ss_pred HHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHH
Q 018211 8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85 (359)
Q Consensus 8 ~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (359)
..+++.+|+++|+.+ +++.+||.||.++++++|..|.+ .|+.+||+|+++++|++++++++
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-----------------~g~~~~~~v~i~~~~~~~~~~~~ 64 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-----------------RGCVDGERLAVLARNSVWLVALH 64 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHHHHH
Confidence 356778999999986 67899999999999999999998 79999999999999999999999
Q ss_pred HHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcC
Q 018211 86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD 165 (359)
Q Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
||++++|++++|+++..+.+++.+++++++++++++++...... .....+..... ...........
T Consensus 65 la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~~~ 130 (488)
T PRK09088 65 FACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------TDVEDLAAFIA------SADALEPADTP 130 (488)
T ss_pred HHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------ccccchhhhhh------hccccccccCC
Confidence 99999999999999999999999999999999999986432210 00000000000 00000001112
Q ss_pred CCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC
Q 018211 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245 (359)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~ 245 (359)
....+++++++|||||||.||+|.++|+++...+..+........+|++++.+|++|.+++...+..++..|+++++.+.
T Consensus 131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~ 210 (488)
T PRK09088 131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG 210 (488)
T ss_pred CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 33457899999999999999999999999998877777777788899999999999999998778889999999999998
Q ss_pred CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHH
Q 018211 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET 325 (359)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~ 325 (359)
+++..++..+. ..++++|++..+|.+++.+..... .....+++||.+++||++++.+..+++.+
T Consensus 211 ~~~~~~~~~~~--------~~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gG~~~~~~~~~~~~~ 274 (488)
T PRK09088 211 FEPKRTLGRLG--------DPALGITHYFCVPQMAQAFRAQPG--------FDAAALRHLTALFTGGAPHAAEDILGWLD 274 (488)
T ss_pred CCHHHHHHHHH--------hhccCCcEEeeHHHHHHHHHhCcC--------cCccccccceEEEecCCCCCHHHHHHHHH
Confidence 89988888732 135899999999999998876521 11234678999999999999999888886
Q ss_pred HhCCcccccccCCcCccccc
Q 018211 326 ITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 326 ~~~~~v~~~YG~TE~g~~~~ 345 (359)
. |+++++.||+||+|++..
T Consensus 275 ~-g~~v~~~YG~TE~~~~~~ 293 (488)
T PRK09088 275 D-GIPMVDGFGMSEAGTVFG 293 (488)
T ss_pred h-CCceeeeecccccccccc
Confidence 5 999999999999997643
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=360.47 Aligned_cols=301 Identities=25% Similarity=0.373 Sum_probs=251.3
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++.+||+||.++++++|..|.+ +|+++|++|+++++|++++
T Consensus 1575 ~~~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~~~~V~l~~~~s~~~ 1637 (3956)
T PRK12467 1575 LVHQLIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIA-----------------LGVGPEVLVGIAVERSLEM 1637 (3956)
T ss_pred cHHHHHHHHHHhCCCCeEEEeCCcEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEccCCHHH
Confidence 47788999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|++++|+++.++.+++.++++++++++++++......+... .......++..... .......
T Consensus 1638 vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~ 1709 (3956)
T PRK12467 1638 VVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP---DGLRSLVLDQEDDW-----LEGYSDS 1709 (3956)
T ss_pred HHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc---cCCcEEEeccccch-----hccCCCC
Confidence 999999999999999999999999999999999999999987654332211 11112222111100 0001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+......++++++|+++...|++|+++++ .++.+|+.|++++
T Consensus 1710 ~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 1788 (3956)
T PRK12467 1710 NPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVW-ELFWPLINGARLV 1788 (3956)
T ss_pred CCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHH-HHHHHHhCCCEEE
Confidence 122334578999999999999999999999999999999888889999999999999999999985 6899999999999
Q ss_pred EcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
+.+. .++..+++. ++++++|++.++|++++.+.+... ....+++||.+++||++++++
T Consensus 1789 i~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~---------~~~~~~~lr~v~~gGe~l~~~ 1849 (3956)
T PRK12467 1789 IAPPGAHRDPEQLIQL----------IERQQVTTLHFVPSMLQQLLQMDE---------QVEHPLSLRRVVCGGEALEVE 1849 (3956)
T ss_pred EcChhhcCCHHHHHHH----------HHHcCCeEEECCHHHHHHHHhhcc---------ccccCCCceEEEEccccCCHH
Confidence 9874 468888888 888999999999999999886411 123468899999999999999
Q ss_pred HHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 319 VMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 319 ~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
+.+.|.+.+ +.+++|.||+||+++.++..
T Consensus 1850 ~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~ 1879 (3956)
T PRK12467 1850 ALRPWLERLPDTGLFNLYGPTETAVDVTHW 1879 (3956)
T ss_pred HHHHHHHhCCCCeEEeCccCCcCEEeEEEE
Confidence 999999887 57899999999999766543
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=310.54 Aligned_cols=305 Identities=15% Similarity=0.139 Sum_probs=228.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeCC-----ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
|+.+.+.++ +++++|+++.+ +++||+||.+++.++|..|.+ +|+++||+|+++++
T Consensus 88 n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i~~~ 147 (652)
T TIGR01217 88 NYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-----------------LGVRPGDRVSGYLP 147 (652)
T ss_pred eHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 555666553 46889988732 589999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcCC--ceeccCC
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP 145 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~ 145 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... .+.+.+.....+. ..+.+..
T Consensus 148 n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~ 227 (652)
T TIGR01217 148 NIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY 227 (652)
T ss_pred CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999997643 2333333332221 1222211
Q ss_pred CC----------CCCCccccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH-HHHHHHHhhccCCCc
Q 018211 146 VP----------NVSSETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSAD 212 (359)
Q Consensus 146 ~~----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d 212 (359)
.. ......+.... ...........+++++|+|||||||.||||+++|.+++. ........+++.++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d 307 (652)
T TIGR01217 228 LGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGD 307 (652)
T ss_pred CCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCc
Confidence 00 00000111000 000011223458999999999999999999999998654 444455567888999
Q ss_pred eEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhh
Q 018211 213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288 (359)
Q Consensus 213 ~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 288 (359)
++++..|+.|.++. .++.+|+.|+++++.+. .++..+++. ++++++|++..+|.+++.+.+...
T Consensus 308 ~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~~~ 375 (652)
T TIGR01217 308 RLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDI----------AERTGATLFGTSAKYVMACRKAGV 375 (652)
T ss_pred EEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHH----------HHHhCCeEEecCHHHHHHHHhcCC
Confidence 99999999998643 35688999999999863 267788888 889999999888887776654210
Q ss_pred hhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC--CcccccccCCcCcccc
Q 018211 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG--HRLLERYGMTEGCTKG 344 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~--~~v~~~YG~TE~g~~~ 344 (359)
......++++||.+++||+++++++.+++.+.++ +.+.+.||+||+++..
T Consensus 376 ------~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 427 (652)
T TIGR01217 376 ------HPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCF 427 (652)
T ss_pred ------CccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccc
Confidence 0112356899999999999999999999998885 4677899999975443
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=306.67 Aligned_cols=313 Identities=21% Similarity=0.297 Sum_probs=244.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++.+|+++|+++.++++||+||.++++++|..|.++ .|+++||+|+++++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~ 89 (560)
T PRK08751 26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGE----------------LQLKKGDRVALMMPNCLQY 89 (560)
T ss_pred cHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHHH
Confidence 467889999999999999999999999999999999999999632 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC-------------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN------------- 148 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 148 (359)
+++++||+++|++++|++|.++.+++.++++++++++++++......+.......+....+......
T Consensus 90 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (560)
T PRK08751 90 PIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFV 169 (560)
T ss_pred HHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhh
Confidence 9999999999999999999999999999999999999999887665555443322221111110000
Q ss_pred ----------C--CCc---ccccccch--hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc----
Q 018211 149 ----------V--SSE---TTVFDQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---- 207 (359)
Q Consensus 149 ----------~--~~~---~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---- 207 (359)
. ... ........ ........++++++++|||||||.||+|.++|.++...+......++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 249 (560)
T PRK08751 170 VKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249 (560)
T ss_pred hhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence 0 000 00000000 00112345688999999999999999999999999887776555443
Q ss_pred cCC-CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHh
Q 018211 208 YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (359)
Q Consensus 208 ~~~-~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 285 (359)
..+ +++++...|++|.+++....+..+..|++.++.. .+++..+++. +.++++|++..+|.++..+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~ 319 (560)
T PRK08751 250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKE----------LKKTRFTAFTGVNTLFNGLLN 319 (560)
T ss_pred cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHH----------HHhcceeEecChHHHHHHHHc
Confidence 233 4677889999999998666666777777776654 5688888888 889999999999999999887
Q ss_pred hhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
... ..+.+++++|.+++||+++++.+.+.|++.+|+++++.||+||+++.++.+.
T Consensus 320 ~~~--------~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 374 (560)
T PRK08751 320 TPG--------FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINP 374 (560)
T ss_pred CcC--------cCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceeccc
Confidence 522 1224577899999999999999999999988999999999999998765543
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=305.24 Aligned_cols=312 Identities=22% Similarity=0.304 Sum_probs=244.5
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.+.++.+|+++|+++.++.+||.||.++++++|..|.+ .|+++||+|+++++|++++
T Consensus 24 ~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~-----------------~gi~~gd~V~i~~~n~~~~ 86 (557)
T PRK07059 24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQS-----------------RGLAKGARVAIMMPNVLQY 86 (557)
T ss_pred CHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCHHH
Confidence 58899999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCC------------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV------------ 149 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 149 (359)
+++++|++++|++++|+++..+.+++.++++.++++++++++.....+.............+......
T Consensus 87 ~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (557)
T PRK07059 87 PVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV 166 (557)
T ss_pred HHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccc
Confidence 99999999999999999999999999999999999999998876655544432222111111100000
Q ss_pred ------------CCcc---ccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh----cc
Q 018211 150 ------------SSET---TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EY 208 (359)
Q Consensus 150 ------------~~~~---~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~ 208 (359)
.... ..... ..........++++++|+|||||||.||+|.++|.+++.++......+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 246 (557)
T PRK07059 167 RRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK 246 (557)
T ss_pred ccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence 0000 00000 000112334568999999999999999999999999987654433221 11
Q ss_pred ---CCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHH
Q 018211 209 ---TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (359)
Q Consensus 209 ---~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 284 (359)
...+.+++.+|++|.+++....+.++..|++.++.+. .++..+++. ++++++|.+..+|.++..+.
T Consensus 247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~ 316 (557)
T PRK07059 247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKE----------LKKYQVHIFPAVNTLYNALL 316 (557)
T ss_pred cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHH----------HHHhCCeeeecCHHHHHHHH
Confidence 1245778899999998876677778888888777664 578888888 88899999999999999988
Q ss_pred hhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 285 QGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
.... ....+++++|.++.||+++++.+.++|.+.+|+++++.||+||++.+++...
T Consensus 317 ~~~~--------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 372 (557)
T PRK07059 317 NNPD--------FDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNP 372 (557)
T ss_pred cCcC--------cCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCC
Confidence 7632 1223567899999999999999999999989999999999999998765543
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=303.05 Aligned_cols=310 Identities=18% Similarity=0.245 Sum_probs=242.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
|++.+.|.+.++.+|+++|+.+.+..+||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~ 80 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALAR-----------------RGIGRGDTVAVLLPNIPA 80 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCchH
Confidence 567889999999999999999999999999999999999999998 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc-eeccCCCCCC-C--------
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNV-S-------- 150 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-------- 150 (359)
+++++||++++|++++|++++.+.+++..++++++++.++++.+..+.+.+.....+.. ...+...... .
T Consensus 81 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (545)
T PRK08162 81 MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160 (545)
T ss_pred HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccc
Confidence 99999999999999999999999999999999999999999988776665543332221 2222111100 0
Q ss_pred Ccccccccc-hh-hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH
Q 018211 151 SETTVFDQS-QA-EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228 (359)
Q Consensus 151 ~~~~~~~~~-~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 228 (359)
......... +. ......+.+++++|+|||||||.||||+++|.++...+......+++..++++++.+|++|..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~ 240 (545)
T PRK08162 161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF 240 (545)
T ss_pred cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence 000000000 00 0111223457899999999999999999999998777666666677888899999999999998865
Q ss_pred HHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEE
Q 018211 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (359)
Q Consensus 229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i 308 (359)
.++..+ .|++.++...+++..+++. ++++++|++.++|.++..+.+.... ....+.+.+.+
T Consensus 241 ~~~~~~-~~g~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~~~~~ 301 (545)
T PRK08162 241 PWTVAA-RAGTNVCLRKVDPKLIFDL----------IREHGVTHYCGAPIVLSALINAPAE--------WRAGIDHPVHA 301 (545)
T ss_pred HHHHHH-HccEEEEeCCCCHHHHHHH----------HHHcCCeEEEechHHHHHHHhCccc--------cccCCccceEE
Confidence 444444 5666666677899999999 8889999999999999999875221 11123456677
Q ss_pred EecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 309 ~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++|+++++++.+.+.+ +++++++.||+||+++.+..+
T Consensus 302 ~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~ 339 (545)
T PRK08162 302 MVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVC 339 (545)
T ss_pred EECCCCCCHHHHHHHHH-hCCceeecccccccCcceeec
Confidence 89999999999998876 599999999999997655443
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=303.36 Aligned_cols=299 Identities=19% Similarity=0.259 Sum_probs=247.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.+.++.+|+++|+...++++||.||.++++++|..|.+ .|+++|++|+++++|+.+
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~-----------------~g~~~~~~v~~~~~~~~~ 64 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDS-----------------LKLPDKSPIIVFGHMSPE 64 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
++++++|++++|++++|+++.++.+++..+++..++++++++.+.... ........... ...... ....
T Consensus 65 ~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~--~~~~ 133 (503)
T PRK04813 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE------ILGIPVITLDE---LKDIFA--TGNP 133 (503)
T ss_pred HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc------ccCCcEEehHH---hhhhhh--cccc
Confidence 999999999999999999999999999999999999999998754100 00001111000 000000 0001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++++|||||||.||+|.++|+++...+......+++..+++++...|++|..++. .++.++..|+++
T Consensus 134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~ 212 (503)
T PRK04813 134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVM-DLYPTLASGGTL 212 (503)
T ss_pred ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHH-HHHHHHhcCCEE
Confidence 1112234568899999999999999999999999999888878888888999999999999999885 578899999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. +++..+++. ++++++|++..+|++++.+.... ...+.+++++|.++++|+++++
T Consensus 213 v~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~--------~~~~~~~~~l~~i~~~G~~l~~ 274 (503)
T PRK04813 213 VALPKDMTANFKQLFET----------LPQLPINVWVSTPSFADMCLLDP--------SFNEEHLPNLTHFLFCGEELPH 274 (503)
T ss_pred EEcChhhhcCHHHHHHH----------HHHcCCeEEEeChHHHHHHHHhh--------ccCcccCCCceEEEEecCcCCH
Confidence 99885 477888888 78899999999999998766541 1223467899999999999999
Q ss_pred HHHHHHHHHh-CCcccccccCCcCcccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~ 346 (359)
++.+++.+.+ +.++++.||+||+|..++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~ 304 (503)
T PRK04813 275 KTAKKLLERFPSATIYNTYGPTEATVAVTS 304 (503)
T ss_pred HHHHHHHHHCCCceEEeCcccchheeEEEE
Confidence 9999999998 7899999999999865443
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.61 Aligned_cols=310 Identities=21% Similarity=0.259 Sum_probs=248.6
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|+.+.++.+||.||.++++++|..|.+ .|+++|++|+++++|+++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~-----------------~g~~~g~~V~i~~~n~~~ 95 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQ-----------------RGVGAGDRVAVFLPNCPQ 95 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCcH
Confidence 467889999999999999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCc--------
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE-------- 152 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 152 (359)
++++++|++++|++++|+++..+.+++.+++++++++++++++...+.+....+......+.+.........
T Consensus 96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 175 (567)
T PRK06178 96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPD 175 (567)
T ss_pred HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccc
Confidence 999999999999999999999999999999999999999999887776666544332222221111000000
Q ss_pred ------------cccccc----chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH-hhccCCCceEE
Q 018211 153 ------------TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFL 215 (359)
Q Consensus 153 ------------~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~l 215 (359)
.+.... ..........++++++|+|||||||.||+|.+||.+++........ .....++|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l 255 (567)
T PRK06178 176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFL 255 (567)
T ss_pred ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000 0001112345689999999999999999999999999876655443 35677899999
Q ss_pred EecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHH
Q 018211 216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295 (359)
Q Consensus 216 ~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 295 (359)
..+|++|..|+..+++.++..|+++++.+.+++..++.. ++++++|.+.++|..+..+.+...
T Consensus 256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~l~~~~~------- 318 (567)
T PRK06178 256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA----------VERYRVTRTVMLVDNAVELMDHPR------- 318 (567)
T ss_pred EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCC-------
Confidence 999999999987778889999999999999999999999 888999999999999998876521
Q ss_pred HHHHhhhccceEEEe--cCCCCCHHHHHHHHHHhCCcccc-cccCCcCccccc
Q 018211 296 AASASAAKQLRLMMC--GSSALPLPVMQQWETITGHRLLE-RYGMTEGCTKGR 345 (359)
Q Consensus 296 ~~~~~~~~~l~~i~~--~G~~l~~~~~~~~~~~~~~~v~~-~YG~TE~g~~~~ 345 (359)
....++++++.+.. .|+.+++++.+.|++.+|..++. .||+||+++.+.
T Consensus 319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~ 370 (567)
T PRK06178 319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDT 370 (567)
T ss_pred -CCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccce
Confidence 11234567787644 45899999999999999887775 799999986543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=361.57 Aligned_cols=300 Identities=19% Similarity=0.296 Sum_probs=252.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.+.++++.+|+++|+++.+..+||+||.++++++|..|.+ +|+++|++|+|++++++++
T Consensus 3721 ~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~-----------------~gv~~~~~V~v~~~~s~~~ 3783 (4334)
T PRK05691 3721 SYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRA-----------------AGVGVDQPVALLAERGLDL 3783 (4334)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 46788999999999999999999999999999999999999998 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC----ceeccCCCCCCCCcccccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIPPVPNVSSETTVFD 157 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (359)
+++++|++++|+++||+++.++.+++.++++++++++++++.........+...... ........ ....
T Consensus 3784 ~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 3856 (4334)
T PRK05691 3784 LGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV-------QAGE 3856 (4334)
T ss_pred HHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc-------cccc
Confidence 999999999999999999999999999999999999999998765544333222111 11111100 0000
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++++++|+|||||||.||||+++|+++++.+......++++++|+++...+++|+.+++ .++.+|+.|
T Consensus 3857 ~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l~~G 3935 (4334)
T PRK05691 3857 VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW-QFLAAPLFG 3935 (4334)
T ss_pred ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH-HHHHHHhCC
Confidence 0011122334678999999999999999999999999999999988999999999999999999999985 699999999
Q ss_pred cEEEEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCC
Q 018211 238 ATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314 (359)
Q Consensus 238 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~ 314 (359)
+++++.+. .++..+++. ++++++|++.++|++++.++.. ....+++||.+++||++
T Consensus 3936 ~~l~i~~~~~~~~~~~l~~~----------~~~~~vt~~~~~Ps~~~~l~~~-----------~~~~~~~lr~~~~gGe~ 3994 (4334)
T PRK05691 3936 ARVEIVPNAIAHDPQGLLAH----------VQAQGITVLESVPSLIQGMLAE-----------DRQALDGLRWMLPTGEA 3994 (4334)
T ss_pred CEEEEcCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhh-----------ccccCCCceEEEecCCc
Confidence 99999874 467888888 8889999999999999988753 11346789999999999
Q ss_pred CCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 315 LPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 315 l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++.++|.+.+ +++++|.||+||++..++..
T Consensus 3995 l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~ 4028 (4334)
T PRK05691 3995 MPPELARQWLQRYPQIGLVNAYGPAECSDDVAFF 4028 (4334)
T ss_pred CCHHHHHHHHHhCCCCeEEeCccCccceeEEEEE
Confidence 9999999998876 78999999999999866544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=363.89 Aligned_cols=300 Identities=24% Similarity=0.310 Sum_probs=251.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++.+||+||.++++++|..|.+ .|+++|++|+++++|++++
T Consensus 2004 ~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~-----------------~gv~~g~~V~l~~~~s~~~ 2066 (5163)
T PRK12316 2004 GVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRA-----------------RGVGPEVRVAIAAERSFEL 2066 (5163)
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++|||+++|++++|+++.++.+++.++++++++++++++.+....+... .......+... .........
T Consensus 2067 ~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~ 2137 (5163)
T PRK12316 2067 VVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP---AGVARLPLDRD------AEWADYPDT 2137 (5163)
T ss_pred HHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc---cccceEeccch------hhhhccCcc
Confidence 999999999999999999999999999999999999999987654432110 01111111110 001111111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+......++++++|+++.+.|++|+.+++ .++.+|+.|++++
T Consensus 2138 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~~~ 2216 (5163)
T PRK12316 2138 APAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHE-QWFHPLLNGARVL 2216 (5163)
T ss_pred CCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHH-HHHHHHhCCCEEE
Confidence 122345679999999999999999999999999999999989999999999999999999998885 6999999999998
Q ss_pred EcCC--CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+. +++..+++. ++++++|++.++|++++.+.+... ......+||.+++||+++++++
T Consensus 2217 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~---------~~~~~~~lr~~~~gGe~l~~~~ 2277 (5163)
T PRK12316 2217 IRDDELWDPEQLYDE----------MERHGVTILDFPPVYLQQLAEHAE---------RDGRPPAVRVYCFGGEAVPAAS 2277 (5163)
T ss_pred eCCcccCCHHHHHHH----------HHHcCCeEEEcChHHHHHHHhhhh---------cccCCcceeEEEEecccCCHHH
Confidence 8763 678889998 889999999999999999876521 1122348999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.++|.+.+ +.+++|.||+||++..++..
T Consensus 2278 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 2306 (5163)
T PRK12316 2278 LRLAWEALRPVYLFNGYGPTEAVVTPLLW 2306 (5163)
T ss_pred HHHHHHhCCCcEEEECccchhheeeeeee
Confidence 99999877 68999999999998765543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=307.22 Aligned_cols=303 Identities=18% Similarity=0.255 Sum_probs=233.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC---------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (359)
|++.+.|.+++..+|+++|+++.+ +++||.||.++++++|..|.+ .| .+||+|
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-----------------~g-~~gd~V 62 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-----------------HG-STGDRA 62 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-----------------hC-CCCCEE
Confidence 789999999999999999998632 689999999999999999998 67 689999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeecCC---CCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC---C-ceeccC
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---A-KFSLIP 144 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~-~~~~~~ 144 (359)
+++++|+++++++++||+++|++++|+++ ..+.+++.++++++++++++++.+..+.+........ . .+..++
T Consensus 63 ~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (578)
T PRK05850 63 VILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD 142 (578)
T ss_pred EEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec
Confidence 99999999999999999999999999997 4578899999999999999999877665554322111 0 111111
Q ss_pred CCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh-c-----cCCCceEEEec
Q 018211 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-E-----YTSADQFLHCL 218 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~d~~l~~~ 218 (359)
... .... .........++++++|+|||||||.||||.++|.+++.++......+ . ...++++++++
T Consensus 143 ~~~-------~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (578)
T PRK05850 143 LLD-------LDSP-RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWL 214 (578)
T ss_pred ccc-------cccC-CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEEC
Confidence 100 0000 00111234568999999999999999999999999998776654432 2 34678999999
Q ss_pred CchhhHHHHHHHHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHH-HHHHhhhhhhhHH
Q 018211 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-TRLIQGYEAMDTE 293 (359)
Q Consensus 219 pl~h~~~~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~-~~l~~~~~~~~~~ 293 (359)
|++|..|++..++.++..|+++++.+.+ ++..+++. +.+++++.. .+|.++ ..+......
T Consensus 215 pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~----------i~~~~~~~~-~~p~~~~~~~~~~~~~---- 279 (578)
T PRK05850 215 PFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQL----------LASNPHAFS-AAPNFAFELAVRKTSD---- 279 (578)
T ss_pred CCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHH----------HHHcCCeEE-eCCcHHHHHHHHhcch----
Confidence 9999999987899999999999998743 57788877 788898865 556554 333322100
Q ss_pred HHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCccccc
Q 018211 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGR 345 (359)
Q Consensus 294 ~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~ 345 (359)
......+++++|.+++||+++++++.++|.+.|+ ..+++.||+||++..+.
T Consensus 280 -~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 336 (578)
T PRK05850 280 -DDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVA 336 (578)
T ss_pred -hhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhhee
Confidence 0112235678999999999999999999988873 36999999999886544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=362.86 Aligned_cols=301 Identities=23% Similarity=0.289 Sum_probs=252.3
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ +|+++|++|+|+++|++++
T Consensus 4552 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~~~~lA~~L~~-----------------~gv~~g~~V~i~~~~s~~~ 4614 (5163)
T PRK12316 4552 CVHQLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIA-----------------RGVGPEVLVGIAMERSAEM 4614 (5163)
T ss_pred cHHHHHHHHHHhCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 46788999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+... .......++..... ......
T Consensus 4615 iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~ 4685 (5163)
T PRK12316 4615 MVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP---DGLASLALDRDEDW------EGFPAH 4685 (5163)
T ss_pred HHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc---cCcceEeecchhhc------ccCCcc
Confidence 999999999999999999999999999999999999999987654433110 01111111111100 001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++++.+......++++++|++++..|++|+.+.+ .++.+|..|++++
T Consensus 4686 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 4764 (5163)
T PRK12316 4686 DPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHE-GLYHPLINGASVV 4764 (5163)
T ss_pred CCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHH-HHHHHHhCCCEEE
Confidence 122344678999999999999999999999999999999988899999999999999999999985 6899999999999
Q ss_pred EcCC--CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++. +++..+++. ++++++|++.++|++++.+.+... ...++++||.+++||+++++++
T Consensus 4765 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~---------~~~~~~~lr~v~~gGe~l~~~~ 4825 (5163)
T PRK12316 4765 IRDDSLWDPERLYAE----------IHEHRVTVLVFPPVYLQQLAEHAE---------RDGEPPSLRVYCFGGEAVAQAS 4825 (5163)
T ss_pred EcCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhhhc---------cccCCCCccEEEEecccCCHHH
Confidence 9874 378888888 888999999999999999887521 1125789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCcccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
.++|.+.+ ++++++.||+||+++.++...
T Consensus 4826 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 4855 (5163)
T PRK12316 4826 YDLAWRALKPVYLFNGYGPTETTVTVLLWK 4855 (5163)
T ss_pred HHHHHHhCCCCEEEecccCccceEEEEEEE
Confidence 98888776 789999999999998765543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=326.90 Aligned_cols=308 Identities=20% Similarity=0.308 Sum_probs=244.4
Q ss_pred hHHHHHHHcCCCCC-CceEEee-CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMAR-DSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p-~~~ai~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.+.+.++++| ++.|+.+ +++++||+||.++++++|+.|.+ |+++||+|+++++|++
T Consensus 632 ~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~------------------g~~~gd~V~i~~~n~~ 693 (1140)
T PRK06814 632 TLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK------------------NTPPGENVGVMLPNAN 693 (1140)
T ss_pred CHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEEcCCch
Confidence 35667777777775 6678776 46899999999999999999975 8999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHH--HHHhhhcC--CceeccCCCCC-CCCccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL--QNVASKSG--AKFSLIPPVPN-VSSETT 154 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~-~~~~~~ 154 (359)
+++++++||+++|++++|++++.+.+++.++++++++++++++++..+.. ....+..+ ...+.++.... ......
T Consensus 694 ~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 773 (1140)
T PRK06814 694 GAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADK 773 (1140)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHH
Confidence 99999999999999999999999999999999999999999987654322 11111111 11222211110 000000
Q ss_pred ccc----cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 155 VFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 155 ~~~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
... ..+....+...++|+++|+|||||||.||||.++|+++..+.......++..++|++++.+|++|..++...+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 853 (1140)
T PRK06814 774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGL 853 (1140)
T ss_pred HHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHH
Confidence 000 0000011134678999999999999999999999999999888888888999999999999999999997788
Q ss_pred HHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
+.++..|+++++.+. ++.+.+.+. ++++++|++..+|++++.+.+.. ...+++++|.++
T Consensus 854 ~~~l~~G~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~----------~~~~~~~lr~v~ 913 (1140)
T PRK06814 854 VLPLLSGVKVFLYPSPLHYRIIPEL----------IYDTNATILFGTDTFLNGYARYA----------HPYDFRSLRYVF 913 (1140)
T ss_pred HHHHHcCCEEEEecCcccHHHHHHH----------HHhcCCEEEEecHHHHHHHHhhc----------ccccccceeEEE
Confidence 899999999998874 455666666 78899999999999999886541 224578999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+||+++++++.+.|.+.+|+++++.||+||+++.+..+
T Consensus 914 ~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 951 (1140)
T PRK06814 914 AGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALN 951 (1140)
T ss_pred EcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEec
Confidence 99999999999999999999999999999999866543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=300.29 Aligned_cols=313 Identities=22% Similarity=0.303 Sum_probs=245.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+.++++.+||.||.++++++|..|.+. .|+++|++|+++++|++++
T Consensus 24 ~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~ 87 (560)
T PRK08974 24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNG----------------LGLKKGDRVALMMPNLLQY 87 (560)
T ss_pred cHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence 477889999999999999999999999999999999999999842 5999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCC-CCCCC---------
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSS--------- 151 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------- 151 (359)
++++|||+++|++++|+++..+.+++.++++.+++++++++.+..+.+..+........+..... .....
T Consensus 88 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (560)
T PRK08974 88 PIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV 167 (560)
T ss_pred HHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccch
Confidence 99999999999999999999999999999999999999998776655555433222211111000 00000
Q ss_pred ------------cccccc------cchh--hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc---c
Q 018211 152 ------------ETTVFD------QSQA--EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---Y 208 (359)
Q Consensus 152 ------------~~~~~~------~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~ 208 (359)
...... .... .......++++++|+|||||||.||+|.++|.++..++......+. .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~ 247 (560)
T PRK08974 168 VKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH 247 (560)
T ss_pred hhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccC
Confidence 000000 0000 0012235689999999999999999999999999887655443332 3
Q ss_pred CCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhh
Q 018211 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287 (359)
Q Consensus 209 ~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 287 (359)
..++.++..+|++|.+++....+..+..|+++++.. ..++..+++. ++++++|.+.++|.+++.+....
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~ 317 (560)
T PRK08974 248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE----------LKKYPFTAITGVNTLFNALLNNE 317 (560)
T ss_pred CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHH----------HHhcCcceEcCcHHHHHHHHhCc
Confidence 456788899999999998766777888999877764 4677888888 88899999999999999988752
Q ss_pred hhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
. ....+++++|.+++||+++++.+.++|++.+|+++++.||+||+|.+++.+.
T Consensus 318 ~--------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 370 (560)
T PRK08974 318 E--------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNP 370 (560)
T ss_pred C--------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccC
Confidence 2 1223567899999999999999999999988999999999999997766543
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=295.11 Aligned_cols=301 Identities=19% Similarity=0.220 Sum_probs=229.3
Q ss_pred HHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHH
Q 018211 8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85 (359)
Q Consensus 8 ~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (359)
..+|+.+|+++|+.+ +++.+||+||.++++++|+.|.+ +|+++||+|+++++|++++++++
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-----------------~gv~~gd~V~i~~~n~~~~~~~~ 66 (501)
T PRK13390 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-----------------AGLRTGDVVALLSDNSPEALVVL 66 (501)
T ss_pred chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHHHHHH
Confidence 456788999999986 36899999999999999999999 79999999999999999999999
Q ss_pred HHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcC
Q 018211 86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD 165 (359)
Q Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
||++++|++++|+++.++.+++.+++++++++.++++................................... .....
T Consensus 67 la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 143 (501)
T PRK13390 67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALA---GAGPR 143 (501)
T ss_pred HHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhc---ccCCC
Confidence 999999999999999999999999999999999999875443333222111110100000000000000000 00011
Q ss_pred CCCCCCcEEEEecCCCCCCcchhhh--hhhHHHHHH----HHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 166 GQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
....+++++|+|||||||.||||.+ +|.++.... ......+++..+|++++.+|++|..++... ...+..|++
T Consensus 144 ~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~ 222 (501)
T PRK13390 144 LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC-SMVHALGGT 222 (501)
T ss_pred CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH-HHHHhcCce
Confidence 1122357999999999999999995 555554422 112335678889999999999999987543 345678999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.+++..+++. ++++++|++.++|+++..+.+.... .....+++++|.++.||+++++++
T Consensus 223 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~~g~~~~~~~ 286 (501)
T PRK13390 223 VVLAKRFDAQATLGH----------VERYRITVTQMVPTMFVRLLKLDAD------VRTRYDVSSLRAVIHAAAPCPVDV 286 (501)
T ss_pred EEEcCCcCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccch------hcccCChhhhheEEEcCCCCCHHH
Confidence 999999999999999 8889999999999999988764211 011235678999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
.+.+.+.+|.++++.||+||+++++.
T Consensus 287 ~~~~~~~~~~~~~~~YG~tE~~~~~~ 312 (501)
T PRK13390 287 KHAMIDWLGPIVYEYYSSTEAHGMTF 312 (501)
T ss_pred HHHHHHhcCCceeeeecccccCceEE
Confidence 99999988999999999999987543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=353.57 Aligned_cols=302 Identities=24% Similarity=0.305 Sum_probs=250.0
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ .|+++|++|+++++|++++
T Consensus 2189 ~l~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~~~~lA~~L~~-----------------~Gv~~g~~V~l~~~~s~~~ 2251 (4334)
T PRK05691 2189 TLHGLFAAQAARTPQAPALTFAGQTLSYAELDARANRLARALRE-----------------RGVGPQVRVGLALERSLEM 2251 (4334)
T ss_pred chHHHHHHHHHHCCCCeEEEeCCeEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|++++|+++.++.+++.++++++++++++++.+..+.+...... ......... . .........
T Consensus 2252 vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~--~---~~~~~~~~~ 2324 (4334)
T PRK05691 2252 VVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELPAG--VARWCLEDD--A---AALAAYSDA 2324 (4334)
T ss_pred HHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcccccc--ceeEEeccc--h---hhhhcCCCC
Confidence 999999999999999999999999999999999999999988655544322111 011111100 0 000000111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+......++++++|+++...|++|+.+.. .++.+|..|++++
T Consensus 2325 ~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~i~~~L~~G~~lv 2403 (4334)
T PRK05691 2325 PLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYSINFDAASE-RLLVPLLCGARVV 2403 (4334)
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHH-HHHHHHhCCCEEE
Confidence 111223568999999999999999999999999999998888899999999999999999999985 6899999999999
Q ss_pred EcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+ .+++..+++. +.++++|++.++|+++..+..... ......++|.+++||+++++++
T Consensus 2404 l~~~~~~~~~~l~~~----------i~~~~vt~~~~tPs~~~~l~~~~~---------~~~~~~~lr~i~~gGe~l~~~~ 2464 (4334)
T PRK05691 2404 LRAQGQWGAEEICQL----------IREQQVSILGFTPSYGSQLAQWLA---------GQGEQLPVRMCITGGEALTGEH 2464 (4334)
T ss_pred ECCcccCCHHHHHHH----------HHHcCCeEEEcCHHHHHHHHHhhh---------ccccCCCceEEEEccccCCHHH
Confidence 976 3578888888 888999999999999999876521 1223567999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.++|.+.+ +..++|.||+||+++..+.+
T Consensus 2465 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 2493 (4334)
T PRK05691 2465 LQRIRQAFAPQLFFNAYGPTETVVMPLAC 2493 (4334)
T ss_pred HHHHHHhCCCceEEeCcCCCcceEEEEEe
Confidence 99999988 47899999999998654433
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=272.77 Aligned_cols=306 Identities=20% Similarity=0.242 Sum_probs=259.5
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++|+++||++|++++++.+||+||.++++++|..|.+ +|+++||+|.+-.+|..+|
T Consensus 29 ~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~-----------------lGi~~Gd~vlvQLpN~~ef 91 (542)
T COG1021 29 TLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRR-----------------LGIKPGDTVLVQLPNVAEF 91 (542)
T ss_pred cHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCchHHH
Confidence 57889999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecc-----ccHHHHHHHhhhcCC-ceeccCCCCCCC--Ccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQNVASKSGA-KFSLIPPVPNVS--SET 153 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~ 153 (359)
++++||++++|+.+|.--|.....|+.+..+.+.++.+|.+. ++.+.+.+....... ...++....+.. .+.
T Consensus 92 ~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~ 171 (542)
T COG1021 92 YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEA 171 (542)
T ss_pred HHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhh
Confidence 999999999999999999999999999999999999988765 334455545444443 233333222111 111
Q ss_pred ccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHH-HHHH
Q 018211 154 TVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-NALL 231 (359)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~-~~~~ 231 (359)
..... ....+.++.+++++++...+.||||.||.+..+|....-++....+..++++++++++.+|..|-+.+. -+.+
T Consensus 172 ~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~L 251 (542)
T COG1021 172 ALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGAL 251 (542)
T ss_pred hhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchh
Confidence 11111 112234556778899999999999999999999999999999999999999999999999999987763 2577
Q ss_pred HhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEec
Q 018211 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (359)
Q Consensus 232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 311 (359)
+.++.|+++|+.++.+++.-+.. |++++||+..++|.....++++. +..+.+++|||.+-+|
T Consensus 252 Gv~~agG~VVla~~psp~~~F~l----------Ierh~Vt~tALVPpla~LWlqa~--------e~~~~~LsSLrllQVG 313 (542)
T COG1021 252 GVFLAGGTVVLAPDPSPELCFPL----------IERHGVTVTALVPPLASLWLQAA--------EWERADLSSLRLLQVG 313 (542)
T ss_pred heeeeccEEEECCCCCHHHHHHH----------HHHhccceEEeccHHHHHHHHhh--------hcccCCchheeEEeec
Confidence 88999999999999999999998 89999999999999999998873 3356789999999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCCcCcc
Q 018211 312 SSALPLPVMQQWETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 312 G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~ 342 (359)
|+.+++.+.+++...+|+.+.|.|||.|.-.
T Consensus 314 Garl~~~~Arrv~~~lgC~LQQVFGMAEGLv 344 (542)
T COG1021 314 GARLSATLARRVPAVLGCQLQQVFGMAEGLV 344 (542)
T ss_pred CcccCHHHHhhchhhhCchHHHHhhhhhhhh
Confidence 9999999999999999999999999999754
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=312.61 Aligned_cols=300 Identities=13% Similarity=0.151 Sum_probs=233.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.+.++.+|+++|++++++.+||+||.++++++|+.|.+ +|+++||+|+|+++|+++
T Consensus 447 ~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~-----------------~Gv~~Gd~VaI~~~n~~e 509 (994)
T PRK07868 447 ISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIA-----------------VGVRQGDRVGVLMETRPS 509 (994)
T ss_pred ccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence 578899999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCC----------CCC
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP----------NVS 150 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 150 (359)
++++++||+++|++++|+++. +++.++++.++++++|++.+..+.+... ...++.+.... ...
T Consensus 510 ~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~~~iiv~~~~~~~~~~~~~~~~~~ 582 (994)
T PRK07868 510 ALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----PGRVLVLGGGESRDLDLPDDADVI 582 (994)
T ss_pred HHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----CceEEEecCCccccccCCcchhhh
Confidence 999999999999999999985 6899999999999999987665544322 12222221100 000
Q ss_pred Ccccccccchh-h---hcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHH
Q 018211 151 SETTVFDQSQA-E---KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226 (359)
Q Consensus 151 ~~~~~~~~~~~-~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 226 (359)
...+....... . ......++|+++|+|| ||||.||++.++|.+...........+++.++|++++.+|++|.+++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl 661 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGL 661 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHH
Confidence 00000000000 0 0011235899999998 57777777777877765554445556788899999999999999999
Q ss_pred HHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccce
Q 018211 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306 (359)
Q Consensus 227 ~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (359)
...++..+..|+++++.+.++++.+++. ++++++|++.++|++++.+++... ....++++||
T Consensus 662 ~~~l~~~l~gG~~vvl~~~~~~~~~~~~----------I~~~~vT~~~~~Ps~l~~L~~~~~--------~~~~~~~slr 723 (994)
T PRK07868 662 LVSLGGAVVGGSRIALSRGLDPDRFVQE----------VRQYGVTVVSYTWAMLREVVDDPA--------FVLHGNHPVR 723 (994)
T ss_pred HHHHHHHhccceEEEecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcC--------CccCCCCceE
Confidence 7666677888888888888999999999 889999999999999999987521 1123567899
Q ss_pred EEEecCCCCCHHHHHHHHHHhC-CcccccccCCcCccccc
Q 018211 307 LMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGCTKGR 345 (359)
Q Consensus 307 ~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~TE~g~~~~ 345 (359)
.++ | +.+++++.++|.+.++ +++++.||+||++.+..
T Consensus 724 ~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~ 761 (994)
T PRK07868 724 LFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA 761 (994)
T ss_pred EEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccc
Confidence 876 3 3499999999999995 89999999999876543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=289.31 Aligned_cols=280 Identities=23% Similarity=0.283 Sum_probs=232.1
Q ss_pred ChHHHHHHH-cCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 1 MEVFKAAYK-KGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 1 m~i~~~l~~-~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
|++.+++.+ +++.+|+++|+.++++.+||.||.++++++|..|.+ .|+.+||+|+++++|++
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~-----------------~g~~~~~~v~l~~~~~~ 64 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQ-----------------QGVVEGSGVALRGKNSP 64 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEecCCCH
Confidence 456666644 478899999999999999999999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS 159 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+++++++||+++|++++|+++..+.+++..+++++++++++++.+... +..+. ..... ..
T Consensus 65 ~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~------~~~~~-------------~~ 124 (458)
T PRK09029 65 ETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSALT------SLHLQ-------------LV 124 (458)
T ss_pred HHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhcc------ccccc-------------cc
Confidence 999999999999999999999999999999999999999998875422 11100 00000 00
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++++++++|||||||.||||.++|++++..+......++..++|+++..+|++|.+++. .++.++..|++
T Consensus 125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~ 203 (458)
T PRK09029 125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGAT 203 (458)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhH-HHHHHHhCCce
Confidence 00111234568899999999999999999999999999988888888999999999999999999985 56778999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+. ..+++. + .++|.+..+|+++..+...... ..++|.+++||+++++.+
T Consensus 204 v~~~~~---~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~~------------~~~l~~i~~gG~~~~~~~ 256 (458)
T PRK09029 204 LVVRDK---QPLEQA----------L--AGCTHASLVPTQLWRLLDNRSE------------PLSLKAVLLGGAAIPVEL 256 (458)
T ss_pred EEeCCh---HHHHHH----------H--hhceeeecChHHHHHHHhcccc------------CCcceEEEECCCCCCHHH
Confidence 998875 445555 4 3789999999999988765211 347999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCcccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
.+++.+ +|.++++.||+||++...+.
T Consensus 257 ~~~~~~-~g~~~~~~YG~tE~~~~~~~ 282 (458)
T PRK09029 257 TEQAEQ-QGIRCWCGYGLTEMASTVCA 282 (458)
T ss_pred HHHHHH-cCCcEeccccccccCcceec
Confidence 999876 49999999999999876543
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=297.19 Aligned_cols=308 Identities=16% Similarity=0.227 Sum_probs=238.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC---ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~---~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
+++.+.|...++.+|+..++..++ +.+||.||.+++.++|..|.+ +|+++||+|+++++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~gi~~gd~V~l~~~n 83 (579)
T PRK09192 21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLA-----------------LGLKPGDRVALIAET 83 (579)
T ss_pred hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCC
Confidence 468899999999988777664332 679999999999999999998 699999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCC-------HHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
+++++++++||+++|++++|+++..+ .+++.++++.+++++++++....+.+......... ..+.......
T Consensus 84 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 161 (579)
T PRK09192 84 DGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL--LHVLSHAWFK 161 (579)
T ss_pred chhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc--cceeehhhhc
Confidence 99999999999999999999976543 68899999999999999998766655543221111 1111000000
Q ss_pred CcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH-hhccCCCceEEEecCchhhHHHHHH
Q 018211 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFLHCLPLHHVHGLFNA 229 (359)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~h~~~~~~~ 229 (359)
... ..........++++++|+|||||||.||||.++|+++..+...... .+++.++|+++.++|++|.+++...
T Consensus 162 ---~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (579)
T PRK09192 162 ---ALP--EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGF 236 (579)
T ss_pred ---ccC--CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHH
Confidence 000 0001112345689999999999999999999999999998887777 7889999999999999999999877
Q ss_pred HHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 018211 230 LLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305 (359)
Q Consensus 230 ~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l 305 (359)
++.++..|+++++.+. .++..+++. +.++++|.+...|.++..+...... ......+++++
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~l 301 (579)
T PRK09192 237 LLTPVATQLSVDYLPTRDFARRPLQWLDL----------ISRNRGTISYSPPFGYELCARRVNS-----KDLAELDLSCW 301 (579)
T ss_pred HHHHHHhCCeeEeeCHHHHHHCHHHHHHH----------HHhcCcEEEeCCcHHHHHHHHhhcc-----ccccccchhhh
Confidence 8888999999987763 257777777 8889999877766655554432110 11223567899
Q ss_pred eEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCccccccc
Q 018211 306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 306 ~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~~~ 347 (359)
|.+.+||+++++.+.++|.+.++ ..+++.||+||+++.++..
T Consensus 302 r~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~ 349 (579)
T PRK09192 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFS 349 (579)
T ss_pred heeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEecc
Confidence 99999999999999999998873 3599999999998766543
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=283.66 Aligned_cols=252 Identities=19% Similarity=0.252 Sum_probs=222.0
Q ss_pred EEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeec
Q 018211 19 AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL 98 (359)
Q Consensus 19 ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 98 (359)
+++++++++||.||.++++++|..|.. |+++|++|+++++|+++++++++|++++|++++|+
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~~------------------~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 62 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQF------------------QEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPI 62 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEec
Confidence 467788999999999999999999854 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcCCCCCCCcEEEEec
Q 018211 99 ALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178 (359)
Q Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 178 (359)
++..+.+++..+++++++++++++..... .. . .....++++++++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~~---~---------------~~~~~~~~~~~i~~T 109 (414)
T PRK08308 63 HPDTPKEAAIRMAKRAGCHGLLYGESDFT---------------KL---E---------------AVNYLAEEPSLLQYS 109 (414)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecCcccc---------------cc---c---------------CCCCCCCCceEEEEC
Confidence 99999999999999999999998763100 00 0 012345789999999
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhh
Q 018211 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES 258 (359)
Q Consensus 179 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~ 258 (359)
|||||.||+|.++|+++..++..+...++...+|+++..+|++|.+++...++.++..|+++++.+.+++..+++.
T Consensus 110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~---- 185 (414)
T PRK08308 110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI---- 185 (414)
T ss_pred CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----
Confidence 9999999999999999999888888888888999999999999999988889999999999999999999999988
Q ss_pred cCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCC
Q 018211 259 YPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338 (359)
Q Consensus 259 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~T 338 (359)
++++++|.+.++|.++..+.+... ...+++.++++|+++++++.++|++. +.++++.||+|
T Consensus 186 ------l~~~~~t~~~~~P~~~~~l~~~~~------------~~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~t 246 (414)
T PRK08308 186 ------LRNTPQHILYAVPLMLHILGRLLP------------GTFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCS 246 (414)
T ss_pred ------HHHhCCeEEEcCHHHHHHHHhcCC------------ccccccEEEEccCCCCHHHHHHHHHh-CChhhhccCcc
Confidence 788999999999999999876521 01368899999999999999999886 78999999999
Q ss_pred cCcccc
Q 018211 339 EGCTKG 344 (359)
Q Consensus 339 E~g~~~ 344 (359)
|++.+.
T Consensus 247 E~~~~~ 252 (414)
T PRK08308 247 EAGCVS 252 (414)
T ss_pred ccCCee
Confidence 998644
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=291.47 Aligned_cols=304 Identities=18% Similarity=0.210 Sum_probs=237.7
Q ss_pred HHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHH
Q 018211 8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85 (359)
Q Consensus 8 ~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (359)
..+++.+|+++|+++ .++.+||.||.++++++|+.|.+ .|+++|++|+++++|++++++++
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-----------------~g~~~~~~V~v~~~~~~~~~~~~ 66 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-----------------LGLKRGDHVAIFMENNLRYLEVC 66 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHHHHH
Confidence 356778999999987 56889999999999999999999 69999999999999999999999
Q ss_pred HHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCCCCCCcccccccch-hh
Q 018211 86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQ-AE 162 (359)
Q Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~ 162 (359)
+||+++|++++++++..+.+++.++++.++++.++++......+.+........ ..................... ..
T Consensus 67 ~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 67 WAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLP 146 (511)
T ss_pred HHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCC
Confidence 999999999999999999999999999999999999987666555444332211 111111111110000000000 00
Q ss_pred hcCCCCCCCcEEEEecCCCCCCcchhhh--hhhHHHH---HHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 163 KMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
.......++.+.++|||||||.||||.+ +|.++.. ........+++.+++++++..|++|..++. ..+.++..|
T Consensus 147 ~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g 225 (511)
T PRK13391 147 ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLG 225 (511)
T ss_pred CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcC
Confidence 1111233467899999999999999995 5666543 233345566788899999999999998885 467789999
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
+++++.+.+++..+++. ++++++|++.++|+++..+.+.... ...+.+++++|.+++||+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~~~~gg~~~~~ 289 (511)
T PRK13391 226 GTVIVMEHFDAEQYLAL----------IEEYGVTHTQLVPTMFSRMLKLPEE------VRDKYDLSSLEVAIHAAAPCPP 289 (511)
T ss_pred ceEEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCchh------hcccCCccceeEEEEccCCCCH
Confidence 99999999999999998 8889999999999999988764211 1123457899999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
++.+++.+.+|.++++.||+||+++++.
T Consensus 290 ~~~~~~~~~~g~~v~~~YG~tE~~~~~~ 317 (511)
T PRK13391 290 QVKEQMIDWWGPIIHEYYAATEGLGFTA 317 (511)
T ss_pred HHHHHHHHHcCCceeeeeccccccceEE
Confidence 9999999988999999999999997644
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=274.41 Aligned_cols=326 Identities=20% Similarity=0.266 Sum_probs=246.1
Q ss_pred hHHHHHHHcCCCCCCceEEee-----------------------CCccccHHHHHHHHHHHHHHHhhCCCCCcccccccc
Q 018211 2 EVFKAAYKKGSMARDSVAIRA-----------------------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE 58 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~-----------------------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~ 58 (359)
|+.+.+.+..+.+.++.++-. +..+.||.|+..++..+|++|.+
T Consensus 42 Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~------------- 108 (678)
T KOG1180|consen 42 TLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK------------- 108 (678)
T ss_pred cHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-------------
Confidence 455666666667777776631 23789999999999999999999
Q ss_pred ccccccCCCCCe-EEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC
Q 018211 59 NSAVLAGGCGAR-IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137 (359)
Q Consensus 59 ~~~~~gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 137 (359)
.|+++++. |+|+++.+.+|+.+++||++.+.++|.++..+..+.+.+-+++++.+.+|+|....+.+........
T Consensus 109 ----lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~ 184 (678)
T KOG1180|consen 109 ----LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK 184 (678)
T ss_pred ----hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC
Confidence 79997776 9999999999999999999999999999999999999999999999999999988887666655444
Q ss_pred C-ce-eccCCCCCCCCcccc----------cccc------hh--hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH
Q 018211 138 A-KF-SLIPPVPNVSSETTV----------FDQS------QA--EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197 (359)
Q Consensus 138 ~-~~-~~~~~~~~~~~~~~~----------~~~~------~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~ 197 (359)
. +. +.+++.+......+. .+.. .. .++.+..++|+|+|+|||||||.||||+++|+|+++
T Consensus 185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA 264 (678)
T KOG1180|consen 185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVA 264 (678)
T ss_pred ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHh
Confidence 2 22 222321111111111 1111 11 123344779999999999999999999999999999
Q ss_pred HHHHHHHhh-ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecc
Q 018211 198 QVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGV 276 (359)
Q Consensus 198 ~~~~~~~~~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 276 (359)
.+....... .+.+.|+++.++||.|++.+.+. +.+++-|+.+-+.+..+.-+--..+ ..--.+.+...+||++.++
T Consensus 265 ~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TLtdts~ki--~kg~kGD~~~lkPTiM~~V 341 (678)
T KOG1180|consen 265 GVTGVGENVPELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTLTDTSSKI--KKGCKGDLTELKPTIMAAV 341 (678)
T ss_pred hhhhhcccCcccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCcceecccchhh--ccCCcCccccccchhhhhh
Confidence 888776654 67899999999999999999875 5569999999887642211111000 0011223667899999999
Q ss_pred hHHHHHHHhhhhhhh----------------------------------HHHHHHHHhhhccceEEEecCCCCCHHHHHH
Q 018211 277 PTMYTRLIQGYEAMD----------------------------------TELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (359)
Q Consensus 277 P~~~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~ 322 (359)
|.++.++.+..-..- ....+.+....++||++++||+|++++..+.
T Consensus 342 pAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF 421 (678)
T KOG1180|consen 342 PAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRF 421 (678)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHH
Confidence 999999876532110 0011234446789999999999999999888
Q ss_pred HHHHhCCcccccccCCcCccccccc
Q 018211 323 WETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 323 ~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+...+.+|+.++||.||+|+..+..
T Consensus 422 ~nic~C~Pv~qGYGLTEtca~~tv~ 446 (678)
T KOG1180|consen 422 MNICFCCPVLQGYGLTETCAAATVL 446 (678)
T ss_pred HHHhccccccccccccchhcccEec
Confidence 8888899999999999999876654
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=285.92 Aligned_cols=295 Identities=24% Similarity=0.308 Sum_probs=230.1
Q ss_pred eEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeee
Q 018211 18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP 97 (359)
Q Consensus 18 ~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 97 (359)
.|++.+++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++|++++|+++++
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~-----------------~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~ 65 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAA-----------------LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP 65 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 4677888999999999999999999999 69999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC------C--------cccccccc-hhh
Q 018211 98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS------S--------ETTVFDQS-QAE 162 (359)
Q Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~~~~-~~~ 162 (359)
+++..+.+++.+++++++++.++++....+.+....... ...+......... . .....+.. ...
T Consensus 66 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (509)
T PRK12406 66 VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAG-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE 144 (509)
T ss_pred cCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhcc-cceeecccccccccccccccccccCCCCccCHHHHhcccC
Confidence 999999999999999999999999887665443322111 1111111000000 0 00000000 001
Q ss_pred hcCCCCCCCcEEEEecCCCCCCcchhhhhhhH---HHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS---IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~---l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.......+++++++|||||||.||+|.++|.. +..........+++.+++++++.+|++|..+..+. +.++..|++
T Consensus 145 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~ 223 (509)
T PRK12406 145 PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGV 223 (509)
T ss_pred ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HHHHhhheE
Confidence 11223468999999999999999999986654 34444445567788899999999999999887654 446889999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.+++..+++. ++++++|.+..+|+++..++..... .....+++++|.+++||+++++++
T Consensus 224 ~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~~~~~~~ 287 (509)
T PRK12406 224 LVLQPRFDPEELLQL----------IERHRITHMHMVPTMFIRLLKLPEE------VRAKYDVSSLRHVIHAAAPCPADV 287 (509)
T ss_pred EEEccCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCchh------hcccCCCCceeEEEEcCCCCCHHH
Confidence 999988899999998 8899999999999999998764221 112346789999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCccccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+++.+.++..+++.||+||+++++...
T Consensus 288 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 315 (509)
T PRK12406 288 KRAMIEWWGPVIYEYYGSTESGAVTFAT 315 (509)
T ss_pred HHHHHHHcCCcEEeeccccccCceEecC
Confidence 9999998899999999999999866543
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=282.25 Aligned_cols=253 Identities=19% Similarity=0.241 Sum_probs=206.6
Q ss_pred cccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccC-CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCH
Q 018211 26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE 104 (359)
Q Consensus 26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 104 (359)
-|.|+||.++++++|..|.+ .|+ .+|++|+++++|+++++++++|++++|++++|+++.++.
T Consensus 19 ~~~~~el~~~~~~~a~~L~~-----------------~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~ 81 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQ-----------------LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQ 81 (452)
T ss_pred ecChHHHHHHHHHHHHHHHH-----------------hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCH
Confidence 48899999999999999999 677 579999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCC
Q 018211 105 SELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184 (359)
Q Consensus 105 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 184 (359)
+++.++++.+++++++++.+..... .. . . .. ......++++++++|||||||.
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~---~---~----~~----~~~~~~~~~~~~i~~TSGTTG~ 134 (452)
T PRK07445 82 QEWQQVLNLVQPDQIWGLDQLKLSH-------------PP---P---L----PS----QGILPNLETGWIMIPTGGSSGQ 134 (452)
T ss_pred HHHHHHHHhcCCCEEEecCcccccc-------------CC---C---C----Cc----cccCCCCCCcEEEEeCCCCCCC
Confidence 9999999999999999876532110 00 0 0 00 0112345899999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCC
Q 018211 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264 (359)
Q Consensus 185 pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~ 264 (359)
||||.+||+++...+......++..+ ++.++.+|++|.+|+. .++.+++.|+++++.+..........
T Consensus 135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~---------- 202 (452)
T PRK07445 135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQEL---------- 202 (452)
T ss_pred CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhh----------
Confidence 99999999999988887777776654 4678899999999985 57889999999999874322222222
Q ss_pred CCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccc
Q 018211 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKG 344 (359)
Q Consensus 265 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~ 344 (359)
..++++|++.++|.+++.+.+.. ..++++||.+++||+++++++.+++.+ +|+++++.||+||++..+
T Consensus 203 ~~~~~~t~~~~vP~~l~~l~~~~-----------~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~ 270 (452)
T PRK07445 203 PPNPSDFFLSLVPTQLQRLLQLR-----------PQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQI 270 (452)
T ss_pred hhhcCceEEEehHHHHHHHHhhC-----------hhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccc
Confidence 44678999999999999987521 124688999999999999999998876 599999999999998655
Q ss_pred cc
Q 018211 345 RH 346 (359)
Q Consensus 345 ~~ 346 (359)
+.
T Consensus 271 ~~ 272 (452)
T PRK07445 271 AT 272 (452)
T ss_pred cc
Confidence 44
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=285.37 Aligned_cols=303 Identities=20% Similarity=0.253 Sum_probs=236.2
Q ss_pred hHHHHHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
++.+.|..+|..+|+.+++.+ .++.+||.||+++++++|+.|.+ .|+++||+|+++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-----------------~g~~~gd~V~l~~~~~~ 65 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-----------------AGVGPGDAVAVLAGAPV 65 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCch
Confidence 578889999999999999975 44689999999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHH-------HHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESEL-------LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (359)
+++++++||+++|++++++++..+.+++ .++++.++++.+++++.....+..... .......+..
T Consensus 66 ~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~------- 137 (545)
T PRK07768 66 EIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-KGIRVLTVAD------- 137 (545)
T ss_pred HHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-cCCceeehhh-------
Confidence 9999999999999999999988776544 556777899999998765443332211 1111111111
Q ss_pred ccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCC-ceEEEecCchhhHHHHHHHH
Q 018211 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNALL 231 (359)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~~~~~~~~ 231 (359)
+...... ......++++++|+|||||||.||+|.++|+++...+......+++..+ |++++.+|++|..+++..++
T Consensus 138 --l~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 214 (545)
T PRK07768 138 --LLAADPI-DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT 214 (545)
T ss_pred --hcccCCC-CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence 1000010 1223456899999999999999999999999999988887777888776 89999999999999987777
Q ss_pred HhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceE
Q 018211 232 APLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (359)
Q Consensus 232 ~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (359)
.++..|+++++.+. .++..+++. ++++++|++..+|..+..+........ .....+++++|.
T Consensus 215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~lr~ 280 (545)
T PRK07768 215 VPMYFGAELVKVTPMDFLRDPLLWAEL----------ISKYRGTMTAAPNFAYALLARRLRRQA----KPGAFDLSSLRF 280 (545)
T ss_pred HHHHCCceEEEeCHHHHHHhHHHHHHH----------HHHhCCEEEECchHHHHHHHHHHhccc----cccCCCchheee
Confidence 88999999988864 256666666 888999998888877766654321100 011246789999
Q ss_pred EEecCCCCCHHHHHHHHHH---hCC---cccccccCCcCcccccc
Q 018211 308 MMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEGCTKGRH 346 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~g~~~~~ 346 (359)
++++|+++++++.+++.+. +|. .+++.||+||++..++.
T Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~ 325 (545)
T PRK07768 281 ALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSF 325 (545)
T ss_pred EEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEc
Confidence 9999999999999999875 555 49999999999876543
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=281.95 Aligned_cols=294 Identities=20% Similarity=0.230 Sum_probs=228.7
Q ss_pred eEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeee
Q 018211 18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP 97 (359)
Q Consensus 18 ~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 97 (359)
.++.+.++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~-----------------~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 65 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRA-----------------LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP 65 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEe
Confidence 5666788999999999999999999999 69999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--CceeccCCCCCCCCcccccccch-hhhcCCCCCCCcEE
Q 018211 98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPAL 174 (359)
Q Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 174 (359)
+++..+.+++.++++++++++++++....+.+........ .....+... ............. .........++.++
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 144 (502)
T PRK08276 66 INWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG-PVPGFRSYEEALAAQPDTPIADETAGAD 144 (502)
T ss_pred cccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCC-CCCccccHHHHHhcCCCCCCCCCCcceE
Confidence 9999999999999999999999999877665554433322 111222110 0000000000000 01112234567899
Q ss_pred EEecCCCCCCcchhhhhhhHHHHHH------HHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCCh
Q 018211 175 IVYTSGTTGKPKGVVHTHKSIDAQV------QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248 (359)
Q Consensus 175 i~~TSGtTG~pK~v~~s~~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~ 248 (359)
++|||||||.||+|.++|.++.... ...........++++++..|++|..++.. .+.++..|+++++.+.+++
T Consensus 145 i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 223 (502)
T PRK08276 145 MLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDA 223 (502)
T ss_pred EEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCH
Confidence 9999999999999999887765322 11122222346789999999999999865 4578999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC
Q 018211 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG 328 (359)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~ 328 (359)
..+++. ++++++|++.++|+++..+.+..... ....+++++|.+++||++++.++.+++.+.+|
T Consensus 224 ~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~ 287 (502)
T PRK08276 224 EEALAL----------IERYRVTHSQLVPTMFVRMLKLPEEV------RARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG 287 (502)
T ss_pred HHHHHH----------HHHhCCeEEEehHHHHHHHHhCcccc------CCCCCcccceEEEecCCCCCHHHHHHHHHHhC
Confidence 999998 88899999999999999988753211 12346789999999999999999999999889
Q ss_pred CcccccccCCcCcccccc
Q 018211 329 HRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 329 ~~v~~~YG~TE~g~~~~~ 346 (359)
.++++.||+||+++++..
T Consensus 288 ~~~~~~yG~tE~~~~~~~ 305 (502)
T PRK08276 288 PIIHEYYASSEGGGVTVI 305 (502)
T ss_pred cHhhhhcccccccceeEe
Confidence 999999999999985443
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=274.82 Aligned_cols=273 Identities=25% Similarity=0.379 Sum_probs=224.3
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHH
Q 018211 28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL 107 (359)
Q Consensus 28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 107 (359)
||.||.+.++++|+.|.+. .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++
T Consensus 1 t~~~l~~~~~~~a~~l~~~----------------~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~ 64 (408)
T TIGR01733 1 TYRELDERANRLARHLRAA----------------GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERL 64 (408)
T ss_pred CHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHH
Confidence 7999999999999999973 489999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcch
Q 018211 108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187 (359)
Q Consensus 108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 187 (359)
.++++.++++.++++......+..... ....+..... ...... ............+++++++|||||||.||+
T Consensus 65 ~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~ 137 (408)
T TIGR01733 65 AFILEDAGARLLLTDSALASRLAGLVL----PIILVDPLEL-AALDDA--PAPPPPDAPSGPDDLAYVIYTSGSTGRPKG 137 (408)
T ss_pred HHHHHhcCCCEEEEcCchhhhccccCC----ceEEechhhh-hhcccc--cccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence 999999999999999876554433211 1111110000 000000 000000111346899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCCh---hHHHHHHHhhcCCCCC
Q 018211 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGN 264 (359)
Q Consensus 188 v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~---~~~~~~~~~~~~~~~~ 264 (359)
|.++|.++..........++..++|++++..|++|.+++. .++.++..|+++++.+.... ..+.+.
T Consensus 138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~---------- 206 (408)
T TIGR01733 138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAAL---------- 206 (408)
T ss_pred EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------
Confidence 9999999999999888888899999999999999999985 68999999999999886543 556555
Q ss_pred CCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC-CcccccccCCcCccc
Q 018211 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEGCTK 343 (359)
Q Consensus 265 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~TE~g~~ 343 (359)
++++++|.+.++|.+++.+.+... ..+++||.+++||+++++++.++|.+.++ +.+++.||+||+|++
T Consensus 207 ~~~~~~t~l~~~p~~~~~l~~~~~-----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~ 275 (408)
T TIGR01733 207 IAEHPVTVLNLTPSLLALLAAALP-----------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW 275 (408)
T ss_pred HHHcCceEEEeCHHHHHHHHHhhh-----------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEE
Confidence 788899999999999999987621 45789999999999999999999999996 999999999999987
Q ss_pred cc
Q 018211 344 GR 345 (359)
Q Consensus 344 ~~ 345 (359)
+.
T Consensus 276 ~~ 277 (408)
T TIGR01733 276 ST 277 (408)
T ss_pred EE
Confidence 64
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=297.91 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=227.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeC---C--ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD---Q--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~---~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
|+.+.|.+.++.+|+++|+... + +++||+|+.++++++|..|.+ +|+++||+|+|+++
T Consensus 428 Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-----------------lGV~~GDrVaIls~ 490 (1452)
T PTZ00297 428 SLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-----------------LGVRPGDVIGVDCE 490 (1452)
T ss_pred CHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 6788999999999999999631 2 689999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC-----C--
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-----V-- 149 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 149 (359)
|+++|+++++||+++|++.+|+++ +.+++.+++++++++++|++.+..+.+.......-..++.++.... .
T Consensus 491 N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~ 568 (1452)
T PTZ00297 491 ASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVAR 568 (1452)
T ss_pred CCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccc
Confidence 999999999999999999999975 4678999999999999999987766665543321112222221100 0
Q ss_pred ------CCcccccccc---hhhhcCCCCCCCcEEEEe---cCCCCCCcchhhhhhhHHHHHHHHHHHhh---ccCCCceE
Q 018211 150 ------SSETTVFDQS---QAEKMDGQRGEDPALIVY---TSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQF 214 (359)
Q Consensus 150 ------~~~~~~~~~~---~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~ 214 (359)
....++.... .........++|++.|+| ||||||.||||++||+|++.++....... ...++|++
T Consensus 569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~ 648 (1452)
T PTZ00297 569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLM 648 (1452)
T ss_pred cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEE
Confidence 0011111100 011122336788999996 99999999999999999999988766532 35678999
Q ss_pred EEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhH--
Q 018211 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT-- 292 (359)
Q Consensus 215 l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-- 292 (359)
++++|++|++++. ..+.++..|+++.. ++++.++++ +++++||++.++|++++++.........
T Consensus 649 Ls~LPLaHI~er~-~~~~~l~~G~~I~~---~d~~~lled----------L~~~rPTv~~~VPrv~ekI~~~i~~~~~~~ 714 (1452)
T PTZ00297 649 VHFTPFAMLFNRV-FVLGLFAHGSAVAT---VDAAHLQRA----------FVKFQPTILVAAPSLFSTSRLQLSRANERY 714 (1452)
T ss_pred EEechHHHHHHHH-HHHHHHHcCCEEEe---CCHHHHHHH----------HHHHCCEEEEecHHHHHHHHHHHHHHhhhh
Confidence 9999999999975 46778999999874 468888888 8889999999999999998765422110
Q ss_pred --------------------------------HHHHHHHhhhccceEEEecCC--CCCHHHHHHHHHHhCCcccccccCC
Q 018211 293 --------------------------------ELQAASASAAKQLRLMMCGSS--ALPLPVMQQWETITGHRLLERYGMT 338 (359)
Q Consensus 293 --------------------------------~~~~~~~~~~~~l~~i~~~G~--~l~~~~~~~~~~~~~~~v~~~YG~T 338 (359)
...+.+....+++|++++||+ +++..+ ..++++..+||+|
T Consensus 715 ~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l------~~~i~i~~g~glT 788 (1452)
T PTZ00297 715 SAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL------LEHISVCYVPCLR 788 (1452)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH------hCCceEEEecceE
Confidence 112233445588999999984 444222 2378899999999
Q ss_pred cCc
Q 018211 339 EGC 341 (359)
Q Consensus 339 E~g 341 (359)
|+.
T Consensus 789 E~~ 791 (1452)
T PTZ00297 789 EVF 791 (1452)
T ss_pred Eee
Confidence 953
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=271.78 Aligned_cols=263 Identities=27% Similarity=0.379 Sum_probs=217.3
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHH
Q 018211 28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL 107 (359)
Q Consensus 28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 107 (359)
||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++|++++|++++|+++..+.+++
T Consensus 1 Ty~~l~~~~~~~a~~l~~-----------------~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~ 63 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKA-----------------QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENER 63 (436)
T ss_pred CHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHH
Confidence 899999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcch
Q 018211 108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187 (359)
Q Consensus 108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 187 (359)
..++++++++++++++....... ....+.... .. .............+++++++|||||||.||+
T Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 64 TNQLEDLDVQLLLTDSLLEEKDF--------QADSLDRIE------AA-GRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred HHHHHhcCCCEEEEcCcccccce--------eecchHhhh------hc-ccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 99999999999999875321100 000000000 00 0000001123345789999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCC
Q 018211 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG 267 (359)
Q Consensus 188 v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 267 (359)
|.++|.++...+......++..++|++++..|++|..++. .++.++..|+++++.+.++ .+++. +++
T Consensus 129 v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~--~~~~~----------l~~ 195 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFN--QLLEM----------IAN 195 (436)
T ss_pred EEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchHH--HHHHH----------HHH
Confidence 9999999999988888889999999999999999999885 6889999999999997654 77777 888
Q ss_pred CcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 268 ~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++|++.++|+++..+.+... ..+++|.++++|+++++++.+.+.+ +|+++++.||+||+|+.++..
T Consensus 196 ~~~t~~~~~P~~l~~l~~~~~------------~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~ 262 (436)
T TIGR01923 196 ERVTHISLVPTQLNRLLDEGG------------HNENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTA 262 (436)
T ss_pred hCCeEEEeHHHHHHHHHhCcC------------CCCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCc
Confidence 999999999999999887521 1167999999999999999998876 599999999999998865544
Q ss_pred c
Q 018211 348 W 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 263 ~ 263 (436)
T TIGR01923 263 T 263 (436)
T ss_pred C
Confidence 3
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=263.96 Aligned_cols=305 Identities=22% Similarity=0.271 Sum_probs=242.3
Q ss_pred CCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHHHHHH
Q 018211 14 ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87 (359)
Q Consensus 14 ~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~~~lA 87 (359)
.++++|+++. ...+||.|+.+++.++|..|.. .|+++||+|++++|+.++++++++|
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-----------------~g~~kGD~V~~~mPm~~e~~ia~lA 140 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-----------------CGLKKGDTVAIYMPMIPEAVIAMLA 140 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-----------------cCCCCCcEEEEeccCChHHHHHHHH
Confidence 5888888863 2458999999999999999997 7999999999999999999999999
Q ss_pred HHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHH---------HHHHhhhcCCc------eeccCC-CCCCCC
Q 018211 88 TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---------LQNVASKSGAK------FSLIPP-VPNVSS 151 (359)
Q Consensus 88 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~------~~~~~~-~~~~~~ 151 (359)
|.++|++..++...++.+++...+++++++++++....... ..+........ ...+.. ......
T Consensus 141 ~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 220 (626)
T KOG1175|consen 141 CARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFW 220 (626)
T ss_pred HhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccH
Confidence 99999999999999999999999999999999987543221 11111111100 001110 011111
Q ss_pred cccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHH-HHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
........+...+...+.+|+.+|+|||||||.||++.+++... +..+......++.+++|++.+...+.++.+.++.+
T Consensus 221 ~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~ 300 (626)
T KOG1175|consen 221 SLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVL 300 (626)
T ss_pred HHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhh
Confidence 11112222223355667799999999999999999999998874 45555666678899999999999999999999888
Q ss_pred HHhhhcCcEEEEcCC--CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEE
Q 018211 231 LAPLYAGATVEFMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i 308 (359)
+++|+.|+++++.+. +++..+++. +.++++|+++..|+.++.+.+..... .....+++||++
T Consensus 301 ~gpl~~Ga~~vl~~g~p~~~~~~~~~----------v~k~~it~l~t~pt~~r~l~~~~~~~------~~~~~~~sLk~~ 364 (626)
T KOG1175|consen 301 YGPLLNGATVVLYEGPPFDPGRIWKI----------LDKYKVTVLYTAPTAYRLLRRLGQED------VTSYSLKSLRTC 364 (626)
T ss_pred hhhhhcCcEEEEEcCCCCChhhhhhh----------HhhcceEEEEeccHHHHHHHHhcccc------ccccccceEEEE
Confidence 899999999999974 588889998 89999999999999999887753322 222345789999
Q ss_pred EecCCCCCHHHHHHHHHHhCC-cccccccCCcCccccccccccC
Q 018211 309 MCGSSALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHCWQST 351 (359)
Q Consensus 309 ~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~~~~~ 351 (359)
.++|+++.++..+++.+.+|. +|++.||+||+|+.+..+....
T Consensus 365 ~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~ 408 (626)
T KOG1175|consen 365 GSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGK 408 (626)
T ss_pred eecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCC
Confidence 999999999999999999987 7999999999999988877655
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=266.53 Aligned_cols=252 Identities=19% Similarity=0.155 Sum_probs=189.5
Q ss_pred cCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc------HHHHHHHhhhcCCceeccCCCC-
Q 018211 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY------REVLQNVASKSGAKFSLIPPVP- 147 (359)
Q Consensus 75 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 147 (359)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. .+.+.+.........+++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 589999999999999999999999999999999999999999999998642 1222222211111111111000
Q ss_pred --------CCCCccccc---ccc----hhh-hcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCC
Q 018211 148 --------NVSSETTVF---DQS----QAE-KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA 211 (359)
Q Consensus 148 --------~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~ 211 (359)
......+.. ... ... ......++|+++|+|||||||.||||++||.+++.+.......++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 000111110 000 000 0112245899999999999999999999999988776655666788899
Q ss_pred ceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhh
Q 018211 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290 (359)
Q Consensus 212 d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 290 (359)
|++++..|++|..++. .++.++..|+++++.+. +++..+++. ++++++|++.++|+++..+++....
T Consensus 161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~----------i~~~~vt~~~~vP~~~~~l~~~~~~- 228 (499)
T PLN03051 161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKF----------VQDAGVTVLGLVPSIVKAWRHTGAF- 228 (499)
T ss_pred CEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHH----------HHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence 9999999999999975 68889999999999874 788889988 8899999999999999998764210
Q ss_pred hHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHh--CCcccccccCCcCccc
Q 018211 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEGCTK 343 (359)
Q Consensus 291 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~TE~g~~ 343 (359)
.....++++||.+++||+++++++.+++.+.+ +.++++.||+||+++.
T Consensus 229 -----~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 278 (499)
T PLN03051 229 -----AMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASG 278 (499)
T ss_pred -----ccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccce
Confidence 01234678999999999999999998777643 4889999999998753
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=234.26 Aligned_cols=296 Identities=25% Similarity=0.374 Sum_probs=237.7
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.+...+...|++.|+.+.+..+||.|+..+++++|..|.+ .|+.+++.|+++.++++++
T Consensus 228 ~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~-----------------~g~~~~~~V~i~~~rs~~~ 290 (642)
T COG1020 228 TIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLIS-----------------LGVGPGETVAILADRSLEL 290 (642)
T ss_pred hHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEcCCCHHH
Confidence 47788999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccccc-ccch
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF-DQSQ 160 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (359)
+++++|++++|+.++|+++.++.+.+.++++++++..+++........... +. ..++ .... ....
T Consensus 291 i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~----~~--~~~~--------~~~~~~~~~ 356 (642)
T COG1020 291 VVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL----PG--LALD--------DALSEIPDT 356 (642)
T ss_pred HHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC----Cc--cccc--------cccccCCcc
Confidence 999999999999999999999999999999999999999883221110000 00 0000 0000 0000
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........+++.++++|||||||.||||..+|+++.+........++.+..|+++...++++..+.+ .++.++..|+++
T Consensus 357 ~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l 435 (642)
T COG1020 357 DPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVF-EIFGALLEGARL 435 (642)
T ss_pred CcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHH-HHHHHHhCCCEE
Confidence 0002233458999999999999999999999999999777777788999999999999999988875 699999999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. .++..+.+. +.++++|++..+|.++..+...... .......+.+|.+.+||++++.
T Consensus 436 ~~~~~~~~~~~~~l~~~----------~~~~~vt~~~~~p~~~~~~~~~~~~------~~~~~~~~~lr~~~~gGe~l~~ 499 (642)
T COG1020 436 VLAPALLQVDPAALLEL----------LEAQGITVLLLVPLLLRLLLLAALA------PDLISPCERLRQLLSGGEALPL 499 (642)
T ss_pred EecCccccCCHHHHHHH----------HHHcCCEEEEecHHHHHHHHhchhh------ccccCCcccccEEEEcCCCCCH
Confidence 99984 467777777 7889999999999999998875110 0001112349999999999999
Q ss_pred HHHHHHHHHh--CCcccccccCCcCccccc
Q 018211 318 PVMQQWETIT--GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 318 ~~~~~~~~~~--~~~v~~~YG~TE~g~~~~ 345 (359)
.+.+.+.... ...+.+.||.||+.....
T Consensus 500 ~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~ 529 (642)
T COG1020 500 ALVQRLLQLAALARRLLNLYGPTEATLDAP 529 (642)
T ss_pred HHHHHHHHhccccceEeeccCccHHhhhee
Confidence 9999998765 468999999999655443
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=204.34 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=157.0
Q ss_pred HHHcCCCCCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 7 AYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 7 l~~~a~~~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
|...++.+|+++|+++. ++++||+|+.++++++|+.|.+. +|+++||+|+|+++|+++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~Gv~~GdrV~i~~~n~~~ 65 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDE----------------LDAEPGSRVALDLPAHWQ 65 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHH
Confidence 45677889999999742 23699999999999999999961 399999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceecc-----CCC---CCCCCc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI-----PPV---PNVSSE 152 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~ 152 (359)
++++++|++++|++++|++ .+++++++++.+..+.+... .....+ ... ......
T Consensus 66 ~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 127 (227)
T TIGR03089 66 TAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAGS-----GEVVALSLDPLGRRVAGELPPGV 127 (227)
T ss_pred HHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcccC-----CceEEEeccccccCCCCCCCCcc
Confidence 9999999999999999995 78899999988766654311 111111 000 000010
Q ss_pred ccccccch---h-hhcC-CCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHH
Q 018211 153 TTVFDQSQ---A-EKMD-GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 153 ~~~~~~~~---~-~~~~-~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 227 (359)
........ . .... ...++|++.|+||||+ +|.+++... ...+++++|+++ .+|++|..|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~ 193 (227)
T TIGR03089 128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFL 193 (227)
T ss_pred cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHH
Confidence 11111011 0 0111 3456899999999986 566655543 556788999999 99999999998
Q ss_pred HHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcce
Q 018211 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt 271 (359)
..++.+|..|+++++.++|++..+++. ++++|||
T Consensus 194 ~~~~~~l~~G~t~v~~~rFd~~~~l~~----------i~~~~vT 227 (227)
T TIGR03089 194 ATLLAPLAAGGSLVLVTHPDPARLDQI----------AETERVT 227 (227)
T ss_pred HHHHHHhccCceEEEecCCCHHHHHHH----------HHhhcCC
Confidence 889999999999999999999999999 8888886
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=184.59 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=127.8
Q ss_pred CCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCC--CceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCC
Q 018211 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS--ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247 (359)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~ 247 (359)
+..++++|||||||.||+|.++|+++...+......+++.. .|++++.+|++|..++.+.++.++..|+++++.+.++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 55789999999999999999999999998888777777653 4689999999999998777888999999999999889
Q ss_pred hhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHh
Q 018211 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT 327 (359)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~ 327 (359)
+..+++. ++.+ |++.++|.+++.+.+.. .++++++. ++||+++++++.+.+.+.
T Consensus 175 ~~~~l~~----------i~~~--t~~~~~P~~l~~l~~~~------------~~l~slr~-i~gGa~l~~~l~~~~~~~- 228 (386)
T TIGR02372 175 ASGIMRH----------ARPG--DLIVGTPFIWEQLADLD------------YRLPGVVG-VSSGAPSTAATWRCLLAA- 228 (386)
T ss_pred hHHHHHh----------hccC--CEEEECcHHHHHHHhhC------------cCCCccee-EecCCCCCHHHHHHHHHh-
Confidence 8888887 4433 88999999999987641 24567876 678999999999999875
Q ss_pred CC-cccccccCCcCccccccc
Q 018211 328 GH-RLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 328 ~~-~v~~~YG~TE~g~~~~~~ 347 (359)
+. ++++.||+||++++.+..
T Consensus 229 g~~~v~~~YG~TEt~~i~~~~ 249 (386)
T TIGR02372 229 GLARLLEVYGATETGGIGLRE 249 (386)
T ss_pred cccchhheecccccccccccc
Confidence 64 799999999999865543
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=168.79 Aligned_cols=157 Identities=26% Similarity=0.375 Sum_probs=127.0
Q ss_pred CCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEE---
Q 018211 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF--- 242 (359)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~--- 242 (359)
...++|+++|+|||||||.||+|.++|.++..........+ ...++++..+|++|..++. .++.++..|++.++
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecCc
Confidence 44568999999999999999999999999998877655543 3567899999999999985 57788999999887
Q ss_pred cCCCChhHHHHHHHhhcCCCCCCCCCc--ceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHH
Q 018211 243 MPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (359)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~ 320 (359)
...+++..+++. +++++ .++...+|..+..++.... ...+++++|.+++||+++++++.
T Consensus 108 ~~~~~~~~~~~~----------i~~~~~~~~~~~~~p~~l~~~~~~~~---------~~~~~~~l~~i~~gG~~l~~~~~ 168 (358)
T PRK07824 108 SAGFDPTALPRA----------VAELGGGRRYTSLVPMQLAKALDDPA---------ATAALAELDAVLVGGGPAPAPVL 168 (358)
T ss_pred CCCcCHHHHHHH----------HHHhCCCceEEEecHHHHHHHHhCcc---------ccCCcccceEEEECCCCCCHHHH
Confidence 345788898888 56666 5566778888877665421 12357889999999999999999
Q ss_pred HHHHHHhCCcccccccCCcCccccc
Q 018211 321 QQWETITGHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 321 ~~~~~~~~~~v~~~YG~TE~g~~~~ 345 (359)
+++.+ +|+++++.||+||+++.+.
T Consensus 169 ~~~~~-~~~~v~~~YG~TE~~~~~~ 192 (358)
T PRK07824 169 DAAAA-AGINVVRTYGMSETSGGCV 192 (358)
T ss_pred HHHHh-cCCcEEecccCCccCCCcC
Confidence 98876 5999999999999987543
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-17 Score=158.63 Aligned_cols=298 Identities=14% Similarity=0.220 Sum_probs=217.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
++.++|+.+++.+|+++|+..- ..++||.++..+|.+++..|..+ --++.||.|++++
T Consensus 771 ~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k----------------~~lk~Gd~V~Lmy 834 (1363)
T KOG3628|consen 771 TILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDK----------------GHLKAGDHVVLMY 834 (1363)
T ss_pred HHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhc----------------ccCCCCCeEEEEc
Confidence 6889999999999999999862 37999999999999999999986 5889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCC------HHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC------Cceecc
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYP------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG------AKFSLI 143 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~ 143 (359)
+++.|++++++||+.+|++++|+.|... -..+..+++.+++..|+++......+........ ..+...
T Consensus 835 ~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~ 914 (1363)
T KOG3628|consen 835 PPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVL 914 (1363)
T ss_pred CChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcc
Confidence 9999999999999999999999988654 3357888999999999999876655543221111 111111
Q ss_pred CCCCCCCC--cccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCch
Q 018211 144 PPVPNVSS--ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221 (359)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~ 221 (359)
++.+.... .....+..-..++....++.+|++-+.--++|.--++.++|+.+++-+....+...+.+...++.+.+.+
T Consensus 915 ~~~~~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~ 994 (1363)
T KOG3628|consen 915 PKLPETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY 994 (1363)
T ss_pred cccchhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence 11111000 0001111111222334557889999988899999999999999999999998888888888888888888
Q ss_pred hhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHH
Q 018211 222 HVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297 (359)
Q Consensus 222 h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 297 (359)
-+.|+..+-+..++.|.+.++.+. -++.-+++. +++|++.-++.+=..++...+.......++..
T Consensus 995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~----------i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~- 1063 (1363)
T KOG3628|consen 995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQI----------ISQYKVKDTYPTYSTLNLCQKGLETSVENLSK- 1063 (1363)
T ss_pred cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHH----------HhcccccccchhHHHHHHHHhccccccchhhh-
Confidence 888887777778999998777763 467788888 89999999988888888777654433222222
Q ss_pred HHhhhccceEEEecCCCCCHHHHHHHHHHh
Q 018211 298 SASAAKQLRLMMCGSSALPLPVMQQWETIT 327 (359)
Q Consensus 298 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~ 327 (359)
...+.++ ..++..-+.....++..|.+.+
T Consensus 1064 ~gnn~s~-s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1064 RGNNTSS-SIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred hhccccc-ceeeecCCccHHHHHHHHHHHH
Confidence 2223333 3344444444456667777665
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=162.59 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=125.6
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH---HhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
..++++.+++||||||.||++.++|.++........ ..++..++|++++..+..+..+.+...+..+..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 346788899999999999999999999876544333 33578899999887665543333333556788899998888
Q ss_pred CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHH
Q 018211 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE 324 (359)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~ 324 (359)
..+++.+++. ++++++|++.++|+++..|.+....... +....++|.++++|+++++++.+.+.
T Consensus 153 ~~~~~~~~~~----------i~~~~~t~l~~~Ps~l~~L~~~~~~~~~------~~~~~~lr~i~~~ge~l~~~~~~~i~ 216 (422)
T TIGR02155 153 GGQTEKQVQL----------IQDFKPDIIMVTPSYMLNLLEELKRMGI------DPAQTSLQVGIFGAEPWTNAMRKEIE 216 (422)
T ss_pred CCCHHHHHHH----------HHHHCCCEEEEcHHHHHHHHHHHHHcCC------CcccCceEEEEEeCCcCCHHHHHHHH
Confidence 7778888888 8889999999999999998765221110 01235899999999999999999999
Q ss_pred HHhCCcccccccCCcCcc
Q 018211 325 TITGHRLLERYGMTEGCT 342 (359)
Q Consensus 325 ~~~~~~v~~~YG~TE~g~ 342 (359)
+.||+++++.||+||+++
T Consensus 217 ~~~g~~v~~~YG~tE~~~ 234 (422)
T TIGR02155 217 ARLGMKATDIYGLSEVIG 234 (422)
T ss_pred HHhCCceEecccchhhcC
Confidence 999999999999999853
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-17 Score=153.86 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=121.4
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
..++++.+.+||||||.||++.+||.++.......... .++.++|+++...|..+..+.....+++...|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 34678899999999999999999999988766555444 388899999999998877665444456678888876444
Q ss_pred CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHH
Q 018211 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE 324 (359)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~ 324 (359)
. ....++. +.++++|.+..+|+.+..+......... .....++|.+++||+++++++.+.+.
T Consensus 164 ~--~~~~~~~----------i~~~~~t~l~~~ps~ll~La~~~~~~g~------~~~~~~lr~ii~gGE~l~~~~r~~ie 225 (445)
T TIGR03335 164 K--CTFPIRI----------IESYRPTGIVASVFKLLRLARRMKAEGI------DPAESSIRRLVVGGESFADESRNYVE 225 (445)
T ss_pred c--hhHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCcceEEEEcCCCCCHHHHHHHH
Confidence 3 2344555 7789999999999988877664221110 01236899999999999999999999
Q ss_pred HHhCCcccccccCCcCc
Q 018211 325 TITGHRLLERYGMTEGC 341 (359)
Q Consensus 325 ~~~~~~v~~~YG~TE~g 341 (359)
+.||+++++.||+||++
T Consensus 226 ~~~g~~v~~~YG~TE~~ 242 (445)
T TIGR03335 226 ELWGCEVYNTYGSTEGT 242 (445)
T ss_pred HHhCCcEEecCChhhhh
Confidence 98999999999999986
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=144.29 Aligned_cols=307 Identities=19% Similarity=0.209 Sum_probs=195.1
Q ss_pred HHHHHHcCCCCCCceEEeeC--------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 4 FKAAYKKGSMARDSVAIRAD--------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~~~--------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
.+.+.+.+...|.+.+..+. -..+||.+....++.++..|.+ .|...|+.|++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-----------------~~~~~~~~v~i~~ 101 (1032)
T KOG1178|consen 39 EDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-----------------LGSLRGTTVAIYM 101 (1032)
T ss_pred hhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-----------------cccccCceEEEec
Confidence 44677778888888877641 2689999999999999999999 6999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCC----HHHHHHHH---hhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYP----ESELLHVM---HDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN 148 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l---~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
..+.++++..+++++.|..+++++|.++ .+++..+. ......++ .. .............+..+ ....
T Consensus 102 ~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~--l~i~~~~~~~~~~~~sv-~~~~- 175 (1032)
T KOG1178|consen 102 LPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RR--LNIIDILLNSLFPKLSV-ETIA- 175 (1032)
T ss_pred cCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hh--hhhHHHHhhccccccch-hhcc-
Confidence 9999999999999999999999999999 22211111 11111111 10 11111111110010000 0000
Q ss_pred CCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH
Q 018211 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 228 (359)
+...........+......++..+.+.||||+||.||+|..+|..+..........+.++..+++-.....+..-....
T Consensus 176 -~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~ 254 (1032)
T KOG1178|consen 176 -DSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQK 254 (1032)
T ss_pred -chhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHH
Confidence 0000011111122223344567899999999999999999999999999988888888888887522222222222222
Q ss_pred HHHHhhhcCcEEEEcCCCC---hhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHH-H----Hh
Q 018211 229 ALLAPLYAGATVEFMPKFS---VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA-S----AS 300 (359)
Q Consensus 229 ~~~~~l~~G~~i~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~-~----~~ 300 (359)
.+.+.|+.|+.+..+.... +.++... +++|+++..+.+|++.+++.........++... . ..
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~----------le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~ 324 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLAST----------LERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLT 324 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHH----------HHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccc
Confidence 2334556666666665433 3444444 889999999999999888876543221111111 0 11
Q ss_pred hhccceEEEecCCCCCHHHHHHHHHHh--CCcccccccCCcCccccc
Q 018211 301 AAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEGCTKGR 345 (359)
Q Consensus 301 ~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~TE~g~~~~ 345 (359)
..++|+....+|++.+.++...+.+.+ +..... |+.+|..+-..
T Consensus 325 ~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~-y~s~~~~~~~s 370 (1032)
T KOG1178|consen 325 KRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLP-YLSTDPTGLVS 370 (1032)
T ss_pred cchhheeeeecCCccchhhhhhhhhcccceeeeec-ccCCCCcccee
Confidence 234799999999999999998777765 333333 77777766443
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=116.97 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=121.8
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh---ccCCCceEEEecC---chhhHHHHHHHHHhhhcCcEEE
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLP---LHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~p---l~h~~~~~~~~~~~l~~G~~i~ 241 (359)
..+++..|-.||||||+|+.+.++...+...+..+...+ +...+|++..+.- +....++ -+++--.|++++
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~---~~ga~rig~~vi 164 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGL---HYGAERIGATVI 164 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchh---HHHHHhhCEEEE
Confidence 336667788899999999999999999888777766654 6778888765544 2222222 334445777777
Q ss_pred EcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHH
Q 018211 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321 (359)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~ 321 (359)
-...-+.+.-.+. ++.+++|++.++|+.+..+.+....... ..+=.+||.+++|+|+++++..+
T Consensus 165 p~~~g~~~~~~~l----------~~df~~tvI~~tps~~l~lae~~~~~G~------~~~~~~lk~~i~gaE~~see~R~ 228 (438)
T COG1541 165 PISGGNTERQLEL----------MKDFKPTVIAATPSYLLYLAEEAEEEGI------DPDKLSLKKGIFGAEPWSEEMRK 228 (438)
T ss_pred ccCCccHHHHHHH----------HHhcCCcEEEEChHHHHHHHHHHHHcCC------ChhhcceeEEEEecccCCHHHHH
Confidence 6655466666666 8889999999999999999887543321 12346799999999999999999
Q ss_pred HHHHHhCCcccccccCCcCccc
Q 018211 322 QWETITGHRLLERYGMTEGCTK 343 (359)
Q Consensus 322 ~~~~~~~~~v~~~YG~TE~g~~ 343 (359)
.+.+.||+++++.||+||..+.
T Consensus 229 ~ie~~~g~~~~diYGltE~~g~ 250 (438)
T COG1541 229 VIENRFGCKAFDIYGLTEGFGP 250 (438)
T ss_pred HHHHHhCCceeeccccccccCC
Confidence 9999999999999999999877
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=113.02 Aligned_cols=290 Identities=19% Similarity=0.177 Sum_probs=202.6
Q ss_pred HHHHHHHcCCCCCCceEEeeCC-----ccccHHHHHHHHHHHHH-HHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 3 VFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISS-LLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~-----~~~Ty~el~~~~~~la~-~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+...++.+..+++..+|.+.-+ ..+||..+..++.+.|. .|.+ .|+.++|+|.+++.
T Consensus 96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-----------------sgl~~~~~vvL~Y~ 158 (1363)
T KOG3628|consen 96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-----------------SGLKPGDRVVLYYR 158 (1363)
T ss_pred hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-----------------cCCCCCcEEEEEEE
Confidence 4456666667888888887632 58999999999999999 5555 79999999999988
Q ss_pred CC--HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--CceeccCCCCCCCCc
Q 018211 77 PS--FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNVSSE 152 (359)
Q Consensus 77 n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 152 (359)
.+ .++++..++|...|.+.+|+++..+.+++..+++..+.+++++.......+........ ..+..+.. ..+...
T Consensus 159 ~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t-~~~k~~ 237 (1363)
T KOG3628|consen 159 KCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKT-NDFKGN 237 (1363)
T ss_pred hhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhc-ccccce
Confidence 87 89999999999999999999999999999999999999999988765555443321100 00001100 000000
Q ss_pred ccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH--------------------hhccCCCc
Q 018211 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--------------------AWEYTSAD 212 (359)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--------------------~~~~~~~d 212 (359)
.. ...... +.-... ..+|-||.+++|.--|++.+|. ++.+.+.... .++....+
T Consensus 238 ~~---~~k~~~-P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~ 311 (1363)
T KOG3628|consen 238 YT---KDKIKK-PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSED 311 (1363)
T ss_pred ee---hhhccC-Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCccc
Confidence 00 001111 111223 7899999999999999999998 6655443321 12344567
Q ss_pred eEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 213 ~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
.++.....+...|++++++.++.+|.+....++ +.+..+... +-++|.+++..--..+.+....++.
T Consensus 312 ~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l----------~~k~R~~~~ltd~~~Lkq~~~ny~~ 381 (1363)
T KOG3628|consen 312 VLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL----------ITKYRATWSLTDYAGLKQPVYNYQE 381 (1363)
T ss_pred ceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh----------hccceeEEEeecccccCcccccccC
Confidence 788888888889999999999999999998886 334433333 7788988877655555555444332
Q ss_pred hhHH---HHHHHHhhhccceEEEecCCCCCHHHHHHHHHH
Q 018211 290 MDTE---LQAASASAAKQLRLMMCGSSALPLPVMQQWETI 326 (359)
Q Consensus 290 ~~~~---~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~ 326 (359)
.+.. ..+.+..++++||.+++.-..+..+..+-...+
T Consensus 382 ~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~ 421 (1363)
T KOG3628|consen 382 DPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDR 421 (1363)
T ss_pred CcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHh
Confidence 2211 123344689999999999999998876555544
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=100.73 Aligned_cols=148 Identities=10% Similarity=0.065 Sum_probs=99.3
Q ss_pred cEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH-hh--ccCCCceEEEe--cCchhhHHHHHHHHHhhhcCcE-EEEcC-
Q 018211 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AW--EYTSADQFLHC--LPLHHVHGLFNALLAPLYAGAT-VEFMP- 244 (359)
Q Consensus 172 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~--~~~~~d~~l~~--~pl~h~~~~~~~~~~~l~~G~~-i~~~~- 244 (359)
-..+..||||||.|-.+..+............. .. +...++++... .+. + ++..+..... +...+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~-------ly~~~~~~~~~~~~~~l 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-N-------LYQSVNNRWISLDFFDL 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-h-------HHHHHHhccceeeecCC
Confidence 456778999999999999998876544333222 22 44455554443 222 1 1111111111 22222
Q ss_pred CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHH
Q 018211 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE 324 (359)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~ 324 (359)
..+.+..++. +++++|+.+.+.|+.+..|.+..+... .. .+++.++++||.++++..+.+.
T Consensus 173 ~~~~~~~l~~----------L~~~~P~~L~g~pS~l~~LA~~~~~~~--------l~-~~~k~ii~~~E~l~~~~r~~Ie 233 (430)
T TIGR02304 173 LAPFQAHIKR----------LNQRKPSIIVAPPSVLRALALEVMEGE--------LT-IKPKKVISVAEVLEPQDRELIR 233 (430)
T ss_pred CcCHHHHHHH----------HHHhCCCEEEEcHHHHHHHHHHHHhcC--------CC-CCceEEEEccCCCCHHHHHHHH
Confidence 1345666666 889999999999999999988632111 01 3689999999999999999999
Q ss_pred HHhCCcccccccCCcCccccccc
Q 018211 325 TITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 325 ~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+.||++|++.||+|| |.+++.|
T Consensus 234 ~~fg~~V~~~YG~tE-g~la~eC 255 (430)
T TIGR02304 234 NVFKNTVHQIYQATE-GFLASTC 255 (430)
T ss_pred HHhCCCeeEccCCch-hheEEec
Confidence 999999999999999 6665555
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=66.60 Aligned_cols=168 Identities=16% Similarity=0.256 Sum_probs=96.1
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh---c-cCCCc-eEEEecCchh----hHHHHHHHHHhhhcCc
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---E-YTSAD-QFLHCLPLHH----VHGLFNALLAPLYAGA 238 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~-~~~~d-~~l~~~pl~h----~~~~~~~~~~~l~~G~ 238 (359)
.++++..++-||||||.|--+.+.+..+..+..++...+ . ..... .++...|-.. ........+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 346678888999999998666666655555544433332 2 22222 2223233321 1111222333445555
Q ss_pred EEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc-cceEEEecC----
Q 018211 239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRLMMCGS---- 312 (359)
Q Consensus 239 ~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~i~~~G---- 312 (359)
.-.+-. .++.+.+...+.+. ..+.++..+++.|.++..++...+.... +..++ ..+.+-.||
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~------~~~~~pv~l~Gftf~~~~~~~~l~~~~~------~~~L~~~s~vi~~GGwK~~ 234 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRA------EHSGEPVLLFGFTFFIWFLLDELEERGI------RFRLPKGSIVIHGGGWKGR 234 (365)
T ss_pred eeeecCCccCHHHHHHHHHHH------HhCCCCEEEECchHHHHHHHHHHHhcCC------cccCCCCCEEEeCCCCCcc
Confidence 534422 36777777665432 3567788999999988877765332111 12233 234444443
Q ss_pred --CCCC-HHHHHHHHHHhCC----cccccccCCcCccccccc
Q 018211 313 --SALP-LPVMQQWETITGH----RLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 --~~l~-~~~~~~~~~~~~~----~v~~~YG~TE~g~~~~~~ 347 (359)
+.++ .++.+.+.+.||+ .+++.|||||.....+.+
T Consensus 235 ~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~ 276 (365)
T PF04443_consen 235 RKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYEC 276 (365)
T ss_pred ccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeC
Confidence 3575 4677777888887 799999999987655444
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.046 Score=51.29 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=76.4
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC--HHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
--+|+.|+...+..+|+.|.. .|..+||+|.....-+ ..-+-..+|+.++|++++|+++..
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~-----------------~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~ 170 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYS-----------------AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN 170 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHH-----------------ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc
Confidence 479999999999999999999 6999999988876622 122678899999999999998854
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHHHhhhc
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~ 136 (359)
.. .-..++++.++.++.+...+...+.+.....
T Consensus 171 ~~-~~~~l~~df~~tvI~~tps~~l~lae~~~~~ 203 (438)
T COG1541 171 TE-RQLELMKDFKPTVIAATPSYLLYLAEEAEEE 203 (438)
T ss_pred HH-HHHHHHHhcCCcEEEEChHHHHHHHHHHHHc
Confidence 44 4466789999999999988877776665544
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.087 Score=51.59 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEecCCCCCC-cchhhhhhhHHHH
Q 018211 166 GQRGEDPALIVYTSGTTGK-PKGVVHTHKSIDA 197 (359)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 197 (359)
...++.+.+...||||||. ||-+.+|...+-.
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 3455778899999999999 9999999987755
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=90.27 E-value=5.3 Score=39.63 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.4
Q ss_pred CCCcEEEEecCCCCC-CcchhhhhhhHHHH
Q 018211 169 GEDPALIVYTSGTTG-KPKGVVHTHKSIDA 197 (359)
Q Consensus 169 ~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 197 (359)
++.+.+...|||||| ++|-+.+|+..+-.
T Consensus 88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 117 (606)
T PLN02247 88 AQPITELLTSSGTSGGQPKLMPSTAEELDR 117 (606)
T ss_pred CCCcceeeccCCCCCCceeEeeccHHHHHH
Confidence 567788999999995 89999999887644
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.81 E-value=5.4 Score=38.25 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=61.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH--HHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|.+++...+...+..+.. .|+.+||++.+..+.+. ......+++..+|+..++...
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~-----------------~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~-- 164 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVS-----------------QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK-- 164 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--
Confidence 467999999888888888877 69999999998876553 233456788899998887643
Q ss_pred CHHHHHHHHhhCCceEEEeccccHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYRE 127 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (359)
.+....++++.++.+++.......
T Consensus 165 -~~~~~~~i~~~~~t~l~~~ps~ll 188 (445)
T TIGR03335 165 -CTFPIRIIESYRPTGIVASVFKLL 188 (445)
T ss_pred -hhHHHHHHHHhCCCEEEECHHHHH
Confidence 234466788999998887654433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.63 E-value=4.9 Score=38.11 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=65.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH--HHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|..++......++..+.. .|+++||++........ ......++....|+..++++...
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~-----------------~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 155 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRA-----------------AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ 155 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHH-----------------cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC
Confidence 356888887777777777776 68999999887655432 22334677888999999887764
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
.+.+...+++.++.+++........+.+
T Consensus 156 -~~~~~~~i~~~~~t~l~~~Ps~l~~L~~ 183 (422)
T TIGR02155 156 -TEKQVQLIQDFKPDIIMVTPSYMLNLLE 183 (422)
T ss_pred -HHHHHHHHHHHCCCEEEEcHHHHHHHHH
Confidence 4677788999999999988776655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=82.97 E-value=20 Score=35.78 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.1
Q ss_pred CCCCcEEEEecCCCCC-CcchhhhhhhHHHH
Q 018211 168 RGEDPALIVYTSGTTG-KPKGVVHTHKSIDA 197 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 197 (359)
.++.+.+...|||||| ++|-+.+|+..+-.
T Consensus 99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 3567778889999997 69999999997665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 5e-30 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-28 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 6e-25 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 8e-25 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 8e-25 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-14 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-14 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 4e-13 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 2e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-11 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 8e-11 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 1e-09 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-09 | ||
| 3e53_A | 480 | Crystal Structure Of N-Terminal Domain Of A Fatty A | 7e-09 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 7e-09 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-08 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 3e-08 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-08 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 7e-08 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 3e-07 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 9e-07 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-06 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-06 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-06 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-06 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-06 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-06 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-05 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-05 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 1e-05 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-05 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-05 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-05 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-04 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-04 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 1e-04 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-04 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-04 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-04 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-04 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-04 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-04 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 6e-04 |
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 2e-95
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 53/326 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A+R ++S +Y +LA++A + + G R+ + A
Sbjct: 38 DRPALRFGERSLTYAELAAAAGATAGRI----------------------GGAGRVAVWA 75
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
P+ E V+ +G AVPL + EL H++ DS S+VL+ D
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD----------- 124
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
L P + + A DG DPAL+VYTSGTTG PKG V +++
Sbjct: 125 ----AELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL 180
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
+ L +AW++T D + LPL HVHGL +L PL G +V + +FS G +
Sbjct: 181 ATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL 240
Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
+ T GVPTMY R+ + A +A + RL++ GS+AL
Sbjct: 241 NDG-----------ATMLFGVPTMYHRIAETLPADPELAKALAG-----ARLLVSGSAAL 284
Query: 316 PLPVMQQWETITGHRLLERYGMTEGC 341
P+ ++ TG R++ERYGMTE
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETL 310
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 4e-79
Identities = 93/326 (28%), Positives = 146/326 (44%), Gaps = 38/326 (11%)
Query: 15 RDSVAIR-ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
+AI A SY +L + A R++++L + L+ G R+
Sbjct: 16 PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQV-----------------GDRVAA 58
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
+ S E + L T +G + +PL +Y EL + + D++ +V+ R+ + +A
Sbjct: 59 QTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIA 118
Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
+K GA + P S S+A + +D A I+YTSGTTG+ KG + +H
Sbjct: 119 AKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHD 178
Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
++ + L + W +T D +H LP++H HGLF A L+A ++ F+PKF I
Sbjct: 179 NLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238
Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
T GVPT YTRL+Q +RL + GS+
Sbjct: 239 LM------------ARATVLMGVPTFYTRLLQSPRLTKETTGH--------MRLFISGSA 278
Query: 314 ALPLPVMQQWETITGHRLLERYGMTE 339
L ++W TGH +LERYGMTE
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGMTE 304
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 3e-63
Identities = 63/337 (18%), Positives = 119/337 (35%), Gaps = 56/337 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
+AI Q+SY+Y L A ++ L +R+G+
Sbjct: 16 HHIAITDGQESYTYQNLYCEASLLA--------------------KRLKAYQQSRVGLYI 55
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S + + + W + + +E+ + M D+ ++ T + S
Sbjct: 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL 115
Query: 136 SGAKF---SLIPPVPNVSSETTVFDQSQAEKMDGQR----------GEDPALIVYTSGTT 182
+F + ++ +D S + + +D A I++TSGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175
Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
G K V T ++ A E+ + +L LP++H+ GL + LL + G TV
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRI 234
Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
+ KF+ I + E IT + VP L+Q + +
Sbjct: 235 VDKFNAEQILTMIKN----------ERITHISLVPQTLNWLMQ-------QGLHEPYN-- 275
Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
L+ ++ G + L +++ + +GMTE
Sbjct: 276 --LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTE 309
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 6e-60
Identities = 68/328 (20%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 16 DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
A + +Y Q+ + A R + +L + + G R+ +
Sbjct: 31 RLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAK-----------------GDRVAL 73
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
+ S EF G G +AVP+ E+ ++ DS +V+ V+ +
Sbjct: 74 LMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR 133
Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
+++ ++ + S + + E G+D I+YTSGTTG PKGVVHTH+
Sbjct: 134 AQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193
Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
S+ + + D+ L LP+ HV L ++ G T+ MP+F +W
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISMPQFDATKVWS 252
Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
E E + VP + + Q E + + R + G +
Sbjct: 253 LIVE----------ERVCIGGAVPAILNFMRQVPEFAELDAPD--------FRYFITGGA 294
Query: 314 ALPLPVMQQWETITGHRLLERYGMTEGC 341
+P +++ + +++ Y +TE C
Sbjct: 295 PMPEALIKIYAA-KNIEVVQGYALTESC 321
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 5e-59
Identities = 60/326 (18%), Positives = 107/326 (32%), Gaps = 42/326 (12%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D A D ++ + A R++S L + + T G R+ I++
Sbjct: 21 DRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHT-----------------GDRVAILS 63
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ E + + G I +P+ E+ V+ D S+V++ DYR+++ V
Sbjct: 64 QNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS 123
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHTHK 193
G D + D +I++T+ G+P+G + +
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG 183
Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
++ L +AW T AD L LPL HV GL +L AG KF +
Sbjct: 184 NLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVIAAKFDPAQAAR 242
Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
+T M + L A+ + LR + +
Sbjct: 243 DIEA----------HKVTVMAEFAPMLGNI----------LDQAAPAQLASLRAVTGLDT 282
Query: 314 ALPLPVMQQWETITGHRLLERYGMTE 339
+ + T +G +E
Sbjct: 283 PETIERFE--ATCPNATFWATFGQSE 306
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-58
Identities = 68/335 (20%), Positives = 116/335 (34%), Gaps = 47/335 (14%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
A D S +Y +L A R +S L + + RI +V
Sbjct: 38 GKTAYIDDTGSTTYGELEERARRFASALRTLGVH-----------------PEERILLVM 80
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ LG ++G + V ++ ++++ S V+++ + +
Sbjct: 81 LDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES 140
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ---------RGEDPALIVYTSGTTGKPK 186
+ + V E +D +D A +Y+SG+TGKPK
Sbjct: 141 AEHDGCQLI-VSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPK 199
Query: 187 GVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP- 244
G VHTH ++ ++ + D L +GL N L PL GAT M
Sbjct: 200 GTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
+ + I+ R E T F GVPT+Y ++ A
Sbjct: 260 RPTADAIFARLVE----------HRPTVFYGVPTLYANMLVSPNLPARADVA-------- 301
Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+R+ ALP + +++ G +L+ G TE
Sbjct: 302 IRICTSAGEALPREIGERFTAHFGCEILDGIGSTE 336
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-56
Identities = 61/328 (18%), Positives = 119/328 (36%), Gaps = 40/328 (12%)
Query: 16 DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
D A+ A ++ +L + +++ L ++ L+ R+ +
Sbjct: 17 DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAV 59
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
VA S + V +L G + L +EL ++ +++ + +
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
S SGA+ + + + + + + PA I YTSGTTG PK + +
Sbjct: 120 SGSGARIIFLGDLV---RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQR 176
Query: 194 SIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
+ +++V ++ + + L +PL+HV G F L+A L T + +F
Sbjct: 177 AAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA 236
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
Q ++ E +T+ PT L + L+ S LR +
Sbjct: 237 LQLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFA 280
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTE 339
+ +P V++ + YG TE
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTE 308
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 8e-56
Identities = 57/335 (17%), Positives = 112/335 (33%), Gaps = 41/335 (12%)
Query: 14 ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
A DS+A+ ++ SY +L +A ++ L +K G +
Sbjct: 38 ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKP-----------------GETALV 80
Query: 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREV 128
E G V S+ SEL + +++++ +
Sbjct: 81 QLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF 140
Query: 129 LQNVASKSGA--KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
L ++ + L+ + + + ++ ++ A + GTTG PK
Sbjct: 141 LNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPK 200
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPLYAGATVEFMPK 245
+ TH V+ E ++T ++L +P H + + + L AG TV
Sbjct: 201 LIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
S + + + VP + +Q ++ Q AS L
Sbjct: 261 PSATLCFPLIEK----------HQVNVTALVPPAVSLWLQALIEGESRAQLAS------L 304
Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEG 340
+L+ G + L + + G +L + +GM EG
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG 339
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 2e-55
Identities = 61/335 (18%), Positives = 122/335 (36%), Gaps = 48/335 (14%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
+ +S ++ ++ +++S + ++ G +G+
Sbjct: 42 EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK-----------------GEHVGVCI 84
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
S ++V + W VP+ Y EL H+++DS+ + ++ E + V K
Sbjct: 85 PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK 144
Query: 136 SGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+G + + S SE E + ED ALI YT GTTG PKGV+ TH +
Sbjct: 145 TGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFN 204
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI--- 251
+ A L A + D + C+P+ H + + G M F+ +
Sbjct: 205 LAANALQLAVATGLSHMDTIVGCMPMFHSAEF-GLVNLMVTVGNEYVVMGMFNQEMLAEN 263
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
++++ T VP L+ E+ + + L++ G
Sbjct: 264 IEKYK-------------GTFSWAVPPALNVLVNTLESSNKTYDWSY------LKVFATG 304
Query: 312 SSALPLPVMQQWETITGHR-------LLERYGMTE 339
+ + ++++ + + + +GMTE
Sbjct: 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 3e-49
Identities = 51/335 (15%), Positives = 107/335 (31%), Gaps = 45/335 (13%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
S+AI ++ SY +L + +++ L L G +
Sbjct: 45 HSLAIICGERQLSYIELDRLSTNLATRLAEKGLGK-----------------GDTALVQL 87
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
EF +G + + S+ + EL + +++ + + +
Sbjct: 88 PNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFID 147
Query: 131 NVASKSGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
++ + + ++ + ++ A + G+TG PK
Sbjct: 148 SLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPK 207
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEFMPK 245
+ TH D V+ E S + L LP H L L L+AG V P
Sbjct: 208 LIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
+ + + + VP+ ++ ++Q+ L
Sbjct: 268 PEPLNCFSIIQR----------HQVNMASLVPSAVIMWLEKAAQYKDQIQS--------L 309
Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEG 340
+L+ G ++ P + +Q + +L + +GM EG
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG 344
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 4e-49
Identities = 71/349 (20%), Positives = 127/349 (36%), Gaps = 54/349 (15%)
Query: 3 VFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
V + + A+ Y+Y + +A R++S L ++
Sbjct: 28 VLENLSNHS----SKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQ---------- 73
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
G I + S EFV LG G I +EL S +++
Sbjct: 74 -------GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126
Query: 121 STEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQAEKMDGQRG-EDPALIVYT 178
+ Y E +++ A +S K + + + + E +D + Y+
Sbjct: 127 TQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYS 186
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPL 234
SGTTG PKGV+ THK + V + + S D L LP+ H++ L + +L L
Sbjct: 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246
Query: 235 YAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
GA + MPKF + + ++++ ++ VP + + + +
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYK-------------VSIAPVVPPVMMSIAKSPDLDK 293
Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWE-TITGHRLLERYGMTE 339
+L + LR++ G + L + RL + YGMTE
Sbjct: 294 HDLSS--------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 8e-49
Identities = 61/338 (18%), Positives = 119/338 (35%), Gaps = 55/338 (16%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D +AI +SY +L + A R+++ ++ R+ +
Sbjct: 40 DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
EF + + G + V S+ SE+ + ++ + + + DYR + +
Sbjct: 83 PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 131 NVASKSGAKFSLIPPVPNV-----SSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTG 183
V SK +P + N+ + E + E + D A + + G+TG
Sbjct: 143 QVQSK-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG 195
Query: 184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF 242
K + TH ++ E + +L LP+ H + L +L LYAG V
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
P S + E +T VP + + + +L +
Sbjct: 256 SPSPSPDDAFPLIER----------EKVTITALVPPLAMVWMDAASSRRDDLSS------ 299
Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEG 340
L+++ G + ++ + + G L + +GM EG
Sbjct: 300 --LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEG 335
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-47
Identities = 71/364 (19%), Positives = 130/364 (35%), Gaps = 63/364 (17%)
Query: 2 EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
E A K+ ++ ++A + + +Y + ++R++ + L T
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 74
Query: 60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V
Sbjct: 75 --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126
Query: 120 LSTEDYREVLQNVASKSGAKFSLI--------PPVPNV-----SSETTVFDQSQAEKMDG 166
++ + + NV K +I ++ S F++
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 186
Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHV 223
R + ALI+ +SG+TG PKGV H++ + + + L +P HH
Sbjct: 187 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246
Query: 224 HGLFNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
G+ L L G V M +F R + Q ++ I + VPT+
Sbjct: 247 FGM-FTTLGYLICGFRVVLMYRFEEELFLRSL-QDYK-------------IQSALLVPTL 291
Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
++ + +L L + G + L V + + + YG+T
Sbjct: 292 FSFFAKSTLIDKYDLSN--------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 339 EGCT 342
E +
Sbjct: 344 ETTS 347
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 3e-46
Identities = 65/339 (19%), Positives = 117/339 (34%), Gaps = 61/339 (17%)
Query: 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
YSY + + + L + L RI + ++ EF
Sbjct: 51 VDYSYAEYLEKSCCLGKALQNYGLVV-----------------DGRIALCSENCEEFFIP 93
Query: 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI- 143
V+ F G P Y EL+H + S ++V S++ + + V +++
Sbjct: 94 VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153
Query: 144 -------PPVPNVSS-----ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
+ + F S + ++ R E ALI+ +SG+TG PKGV T
Sbjct: 154 LDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLT 213
Query: 192 HKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
H++I + + + + L +P HH G+ L L G V + KF
Sbjct: 214 HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDE 272
Query: 249 ----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
+ + Q ++ T+ VPT++ L + +L
Sbjct: 273 ETFLKTL-QDYK-------------CTSVILVPTLFAILNKSELLNKYDLSN-------- 310
Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEGCT 342
L + G + L V + + + YG+TE +
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 4e-43
Identities = 65/358 (18%), Positives = 124/358 (34%), Gaps = 64/358 (17%)
Query: 3 VFKAAYKKGSMARDSVAI--RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
+F+ + + Y+Y + + +I++ +
Sbjct: 67 IFQNISEFA----TKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQ---------- 112
Query: 61 AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
+ ++ EFV L F G A + +E+ S+ +++
Sbjct: 113 -------NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLII 165
Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV--FDQSQAEKMDGQRG--------E 170
+ Y + ++ + + G I +V F + + +
Sbjct: 166 TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGL 226
D + Y+SGTTG PKGV+ THK + V + + S D L LP+ H++ L
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285
Query: 227 FNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
+ +L L GA + MPKF + I QR + +T VP +
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELI-QRCK-------------VTVAPMVPPIVLA 331
Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE 339
+ + E +L + +R++ G++ L + +L + YGMTE
Sbjct: 332 IAKSSETEKYDLSS--------IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 23/222 (10%)
Query: 26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
+ +Y+QL A I++ L + K G R+ ++ P +
Sbjct: 40 TMTYEQLDQHAKAIAATLQAEGAKP-----------------GDRVLLLFAPGLPLIQAF 82
Query: 86 LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
LG ++GCIAVP+ E ++ +S +VL D+ + +
Sbjct: 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---KFTADELNTNPK 139
Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
+P ++ E+ ++S + + + D A + YTSG+T PKGV+ +H ++ + +
Sbjct: 140 FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI 199
Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
++ LP HH GL +L P+Y G M
Sbjct: 200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-35
Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 80/347 (23%)
Query: 26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
+ ++ QL L ++ L G G R+ I A E+V
Sbjct: 58 TLTWSQLYRRTLNVAQELSR------------------CGSTGDRVVISAPQGLEYVVAF 99
Query: 86 LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
LG +G IAVPL++ V+ DS +L+T + + ++ +
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--- 156
Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
P + + D A + YTSG+T P GVV +H+++ + L
Sbjct: 157 -SPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL 215
Query: 203 TEAWEYTS------ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR---GIWQ 253
+ + + LP +H GL + AP+ G S W
Sbjct: 216 MSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWM 275
Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLM 308
S AF+ P +E + + +
Sbjct: 276 HLMASDFH----------AFSAAPNF------AFELA---ARRTTDDDMAGRDLGNILTI 316
Query: 309 MCGSSALPLPVMQQWETITGHRLLER--------------YGMTEGC 341
+ GS V Q TI R +R Y + E
Sbjct: 317 LSGSE----RV--QAATI--KRFADRFARFNLQERVIRPSYWLAEAT 355
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 65/354 (18%), Positives = 135/354 (38%), Gaps = 63/354 (17%)
Query: 6 AAYKKGSMARDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
A +K S A+ + +++ +L+ ++ + +
Sbjct: 48 ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAA-------------------- 87
Query: 61 AVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
VL+G CG R+ +V E+ +LG +G I +P + +++L+ + S
Sbjct: 88 NVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147
Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--------- 167
+++ ++ + + VAS+ + + VS ++ + + ++
Sbjct: 148 KAIVAGDEVIQEVDTVASECPS----LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
++ + I +TSGT+G PK H++ S+ + +M ++D + +
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 228 NALLAPLYAGATVEF--MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
+L+ P GA +PKF I + SYP+ + G P +Y L+Q
Sbjct: 264 CSLMEPWALGACTFVHLLPKFDPLVILKTL-SSYPI---------KSMMGAPIVYRMLLQ 313
Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
Q S+ L+ + +L ++ W TG + E YG TE
Sbjct: 314 ---------QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTE 358
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 68/333 (20%), Positives = 123/333 (36%), Gaps = 63/333 (18%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
D+ A+ ++ SY +L A RI+ L G G G+ + +
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQK------------------HGAGKGSVVALY 520
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
K S E V G+LG +G +P+ PE + +++ DS + +L+ ++ +E +
Sbjct: 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ + T F++ ++ DPA I+YTSGTTGKPKG + TH +
Sbjct: 581 T-------GTTL--FIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK---FS 247
I V+ + ++ D FL F+A A + A + +
Sbjct: 632 IQGLVKH-VDYMAFSDQDTFLSVSNYA-----FDAFTFDFYASMLNAARLIIADEHTLLD 685
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
+ + E + ++ L A K LR
Sbjct: 686 TERLTDLILQ----------ENVNVMFATTALFNLLTD-----------AGEDWMKGLRC 724
Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
++ G +P +++ + +L+ YG TE
Sbjct: 725 ILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 52/334 (15%), Positives = 115/334 (34%), Gaps = 61/334 (18%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D + +Y QL + I++ + S L + + +
Sbjct: 19 DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLA-----------------KSPVLVFG 61
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+++ +A + SG +P+ + +L ++ + S++++ E++ ++ +
Sbjct: 62 AQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--- 118
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
V E+ + E+ +G+D I++TSGTTG+PKGV +H ++
Sbjct: 119 --------SLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170
Query: 196 DAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR 249
+ + E + Q L P F+ L G T+ +PK V
Sbjct: 171 LSFTNWMIEDAAFDVPKQPQMLAQPPYS-----FDLSVMYWAPTLALGGTLFALPKELVA 225
Query: 250 ---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306
++ + + +T P+ + + ++ A L
Sbjct: 226 DFKQLFTTIAQ----------LPVGIWTSTPSFADMAMLSDDFCQAKMPA--------LT 267
Query: 307 LMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
L + ++ E +++ YG TE
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTE 301
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 55/332 (16%), Positives = 94/332 (28%), Gaps = 68/332 (20%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
AIR S Y QL SA ++S L + G +G+
Sbjct: 42 HREAIRDRFGSVDYRQLLDSAEQLSDYL------------------LEHYPQPGVCLGVY 83
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
+ S E + +L SG + + L P + + D ++L +
Sbjct: 84 GEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP- 142
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ + + A I ++SGTTG+PK + TH
Sbjct: 143 --------------CVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG 188
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK--FSV 248
I + +FL PL F+A + L G
Sbjct: 189 ITRLCLG-QSFLAFAPQMRFLVNSPLS-----FDAATLEIWGALLNGGCCVLNDLGPLDP 242
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
+ Q E + +++ L+ LR +
Sbjct: 243 GVLRQLIGE----------RGADSAWLTASLFNTLVD-----------LDPDCLGGLRQL 281
Query: 309 MCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
+ G L +P +++ L+ YG TE
Sbjct: 282 LTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 53/333 (15%), Positives = 113/333 (33%), Gaps = 60/333 (18%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
+ A R+ +S +Y +L + R ++ + ++G + I +
Sbjct: 16 QTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYG 59
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ LG+ +G +P+ LS P + ++ S +++
Sbjct: 60 HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQ-- 117
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKGVVHTHKS 194
+ VS+E + ++ + D + + I+YTSG+TG PKGV + +
Sbjct: 118 ----------IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN 167
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
+ + + + + FL+ P F+ L L +G T+ + K +V
Sbjct: 168 LQSFTDWICADFPVSGGKIFLNQAPFS-----FDLSVMDLYPCLQSGGTLHCVTKDAVNK 222
Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
+++ ++ + +T P+ + S
Sbjct: 223 PKVLFEELKK----------SGLNVWTSTPSFVQMCLM--------DPGFSQDLLPHADT 264
Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
M LP+ V + E ++ YG TE
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 47/283 (16%), Positives = 86/283 (30%), Gaps = 46/283 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
I + S A ++G SG VP+ P ++ DS +M ++ + +
Sbjct: 81 AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV 140
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
+ L + + D S A ++YTSG+TG PKGV
Sbjct: 141 EL----PPETKVLDTKNQSFIENLSTQDTSDILN--NYPENLDAYLLYTSGSTGTPKGVR 194
Query: 190 HTHKSI--------DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAG 237
+ ++ + ++ E +FL F+ + G
Sbjct: 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA-----FDVHIGEMFLAWRFG 249
Query: 238 ATVEFMPKFSVR-GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
+ S+ + + +RE +T VP++ +
Sbjct: 250 LCAVTGERLSMLDDLPRTFRE----------LGVTHAGIVPSLLDQTGL----------- 288
Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
A L + G + Q W + L+ YG TE
Sbjct: 289 -VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 60/338 (17%), Positives = 118/338 (34%), Gaps = 78/338 (23%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
++VAI + + +Y +L A +++ + G G +GI+
Sbjct: 54 NNVAIVCENEQLTYHELNVKANQLARIFIEK------------------GIGKDTLVGIM 95
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
+ S + G+L +G VP+ + YP+ + +++ DS M+L+ + ++
Sbjct: 96 MEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI----- 150
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGV 188
+ + +F++ + +G + D A ++YTSGTTG PKG
Sbjct: 151 ----------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMP 244
+ HK I + T D+ + F+A + L GA++ +
Sbjct: 201 MLEHKGISNLKVFFENSLNVTEKDRIGQFASIS-----FDASVWEMFMALLTGASLYIIL 255
Query: 245 K---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
K Q + + IT T PT +
Sbjct: 256 KDTINDFVKFEQYINQ----------KEITVITLPPTY--------------VVHLDPER 291
Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
++ ++ SA ++ +W + YG TE
Sbjct: 292 ILSIQTLITAGSATSPSLVNKW--KEKVTYINAYGPTE 327
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 56/333 (16%), Positives = 105/333 (31%), Gaps = 59/333 (17%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
D A +Y QL + ++ + S + I +
Sbjct: 16 DQTAFVWRDAKITYKQLKEDSDALAHWISS------------------EYPDDRSPIMVY 57
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
E + LG +G +P+ LS P + + +S ++LS V
Sbjct: 58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVR- 116
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
I N+ + +G++ I+YTSG+TG PKGV T+
Sbjct: 117 --------IVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
+ + + E + + FL+ P F+ + L G T+ + K +
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFS-----FDLSVMDIYPSLVTGGTLWAIDKDMIAR 223
Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
++ + I +T P+ + + S S ++
Sbjct: 224 PKDLFASLEQ----------SDIQVWTSTPSFAEMCLM--------EASFSESMLPNMKT 265
Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
+ LP V ++ E ++ YG TE
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 59/360 (16%), Positives = 118/360 (32%), Gaps = 87/360 (24%)
Query: 15 RDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
+ +A+ ++K +++ L + + ++ + + G
Sbjct: 70 PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGK-----------------GD 112
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--- 126
+ + K ++F +LG G IAVP ++++ + + + M++ +
Sbjct: 113 YVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPE 172
Query: 127 ---EVLQNVASKSGAKFSLIPPVPN---------VSSETTVFDQSQAEKMDGQRGEDPAL 174
E K + V S + ED L
Sbjct: 173 QVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN---EDICL 229
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH---------- 224
+ ++SGT G PK V H + + + A ++ + +H
Sbjct: 230 VYFSSGTAGFPKMVEHDNT---YPLGHILTA-------KYWQNVEDDGLHYTVADSGWGK 279
Query: 225 GLFNALLAPLYAGATVEFM---PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
++ L AG V F+ +F + + ++ Y V T F PT+Y
Sbjct: 280 CVWGKLYGQWIAGCAV-FVYDYDRFEAKNMLEKA-SKYGV---------TTFCAPPTIYR 328
Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-P-VMQQWETITGHRLLERYGMTE 339
LI+ + S L+ + PL P V ++ TG +L+E +G TE
Sbjct: 329 FLIK---------EDLSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 6e-23
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 171 DPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
+ YT+GTTG PKGVV++H+++ + L + + D L +P+ HV+
Sbjct: 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 236
Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
A L V P+ + + + E +T GVPT++ L E
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDG----------EGVTFTAGVPTVWLALADYLE 286
Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348
+ L K LR ++ G SA P ++ ++E + G + + YG+TE +
Sbjct: 287 STGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNF 337
Query: 349 QSTSW 353
+
Sbjct: 338 VKSHL 342
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 2e-17
Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 25/199 (12%)
Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH- 221
G + + + GTTG PK VV I+A + + L +P
Sbjct: 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGP 146
Query: 222 HVHGLFNALLAPLYAGA--TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA---------I 270
H+ G N A G +++ P++ R + + + + + I
Sbjct: 147 HIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI 206
Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW--ETITG 328
P + L++ E + Q+ L + G + L L ++ E +
Sbjct: 207 RFLVTTPPVLRELLKRPEVVLQMKQS--------LAQITLGGTELNLDEIKFIASEILPD 258
Query: 329 HRLLERYGMTEGCTKGRHC 347
YG T R
Sbjct: 259 CEFSASYGSTSALGVSRSL 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-09
Identities = 62/403 (15%), Positives = 123/403 (30%), Gaps = 102/403 (25%)
Query: 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
M K ++ SM I + Y+ +Q+ + +S L L+ + + +
Sbjct: 95 MSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKN 152
Query: 61 AVLAG--GCG--------AR-IGIVAKPSFEFVAGVLGTWFS-GCIAVPLALSYPESELL 108
++ G G G + K F + W + P + +LL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF--WLNLKNCNSPETVLEMLQKLL 206
Query: 109 HVM-------HDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSSETTV--FD- 157
+ + D ++ L + L+ + + L+ V NV + F+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264
Query: 158 QSQAEKMDGQRGEDPALIVYT--SGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQ 213
+ +++ T T TH S+D LT E +
Sbjct: 265 SCK-------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--K 309
Query: 214 FLHC----LP--LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG 267
+L C LP + + +++A E + W W+ VN ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLAT--WDNWKH---VNCDKLT 356
Query: 268 EAITAFTGV--PT----MYTRL--------------------IQGYEAMD--TELQAASA 299
I + V P M+ RL + + M +L S
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITG-HR-LLERYGMTEG 340
KQ + ++ L + + E HR +++ Y + +
Sbjct: 417 -VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
+ Q E M+ EDP I+YTSG+TGKPKGV+HT
Sbjct: 246 PEHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTT 278
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
+D EDP ++YTSG+TG PKGV H+
Sbjct: 256 CTPVDS---EDPLFLLYTSGSTGAPKGVQHS 283
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 37/211 (17%), Positives = 62/211 (29%), Gaps = 64/211 (30%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGL 226
+ + I +SGTTGKP V +T ID ++ + D+ +GL
Sbjct: 90 DRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG----YGL 145
Query: 227 FNALLAPLYA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
F L Y G TV + + F
Sbjct: 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRP---------------------- 183
Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGH 329
P+ + E + +S LR+ + G+ M+ E G
Sbjct: 184 DIIMVTPSYMLSIADEIERQGLDPVQSS------LRIGIFGAEPWT-NDMRVAIEQRMGI 236
Query: 330 RLLERYGMTE--------GCTK---GRHCWQ 349
++ YG++E C + G W+
Sbjct: 237 DAVDIYGLSEVMGPGVASECVETKDGPTIWE 267
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 45/178 (25%)
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
+SGTTG P +VH+ +D+ ++ D F + +G+F L
Sbjct: 94 SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG----YGMFTGGLGFQ 149
Query: 235 YA----GATVEFMPKFSVRGIWQRWRESYPV-NGN--RAGEAI-----TAFTGVPTMYTR 282
Y G P GN R + I TA +P+ R
Sbjct: 150 YGAERLGCLT------------------VPAAAGNSKRQIKFISDFKTTALHAIPSYAIR 191
Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
L + ++ + + + L+ ++ G+ ++ E + + +GMTE
Sbjct: 192 LAEVFQEEGIDPRETT------LKTLVIGAEPHT-DEQRRKIERMLNVKAYNSFGMTE 242
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 64/203 (31%)
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
+SGTTGKP V +T + ID + + D + +GLF L
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG----YGLFTGGLGIH 155
Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
Y G V + + F P+
Sbjct: 156 YGAERLGCMVVPMSGGQTEKQVQLIRDFEP----------------------KIILVTPS 193
Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
LI + +S L++ + G+ ++ ET G L+ YG+
Sbjct: 194 YMLNLIDEMVRQGMDPAESS------LKIGIFGAEPWT-QALRNEVETRVGIDALDIYGL 246
Query: 338 TE--------GCTK---GRHCWQ 349
+E C + G W+
Sbjct: 247 SEVMGPGVACECVETKDGPVIWE 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.94 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.91 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.91 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.89 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.89 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 93.68 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.38 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.16 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.07 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 82.06 |
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=379.33 Aligned_cols=312 Identities=22% Similarity=0.337 Sum_probs=257.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCc--cccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+|+.+.|.++++.+|+++|+++.++ ++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 78 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-----------------LGIAKGDRVALLMPNS 78 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEcCCC
Confidence 4788999999999999999998766 99999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccc-cc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV-FD 157 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 157 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.............+.. ......... ..
T Consensus 79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 157 (517)
T 3r44_A 79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW-IGADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc-cCcccHHHHhhc
Confidence 9999999999999999999999999999999999999999999998877776655433211100000 000000000 00
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++. ++.|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcC
Confidence 011112234567899999999999999999999999999999998999999999999999999999999754444 5599
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
+++++.+.+++..+++. +.++++|++.++|++++.+.+.. .....++++||.+++||+++++
T Consensus 237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence 99999999999999999 78899999999999999998762 3345678999999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCcccccccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCWQS 350 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~~ 350 (359)
++.+.|.+. |+++++.||+||+++.++.....
T Consensus 299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~ 330 (517)
T 3r44_A 299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSE 330 (517)
T ss_dssp HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGG
T ss_pred HHHHHHHhc-CCcEEEeecccccccceeecCCc
Confidence 999999886 99999999999999876655443
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=376.49 Aligned_cols=312 Identities=22% Similarity=0.294 Sum_probs=263.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
|++.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 84 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-----------------IGIQQGDVIMLFLPSS 84 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence 57899999999999999999985 6899999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC-Ccccccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD 157 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.............++...... .......
T Consensus 85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T 3ni2_A 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ 164 (536)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence 999999999999999999999999999999999999999999999887777666544444444443221100 0111111
Q ss_pred c-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 158 Q-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
. ..........++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++.+|++|.+++...++.
T Consensus 165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (536)
T 3ni2_A 165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244 (536)
T ss_dssp SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence 1 1112233456799999999999999999999999999988766543 3567899999999999999999777888
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....++++||.+++||
T Consensus 245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG 306 (536)
T ss_dssp HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence 9999999999999999999999 888999999999999999987632 2335688999999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.++|++.+ ++++++.||+||++++++.+
T Consensus 307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 342 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC 342 (536)
T ss_dssp SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEEC
T ss_pred CCCCHHHHHHHHHHCCCCCccccccccccchhhhcc
Confidence 999999999999999 89999999999999876544
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=373.23 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=255.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 87 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE 87 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence 368899999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhcCC-ceeccCCCCCCCCccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFSLIPPVPNVSSETT 154 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++... ...+..+....+. ...++.... .....
T Consensus 88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 165 (539)
T 1mdb_A 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLP 165 (539)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--TTSEE
T ss_pred HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--cchhh
Confidence 999999999999999999999999999999999999999998753 1233333222221 111111110 00111
Q ss_pred cccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHHH
Q 018211 155 VFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (359)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~ 232 (359)
.... ..........++|+++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++.. .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (539)
T 1mdb_A 166 LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG 245 (539)
T ss_dssp GGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHH
Confidence 1111 0011123456789999999999999999999999999999988888889999999999999999999864 6889
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+|+.|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++||
T Consensus 246 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~~~~gG 307 (539)
T 1mdb_A 246 VLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAAS--------SRRDDLSSLQVLQVGG 307 (539)
T ss_dssp HHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHHH--------HCCCCCTTCCEEEEES
T ss_pred HHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCcc--------ccCCCccceeEEEEcC
Confidence 9999999999999999999999 788999999999999999987622 2235689999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCcccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKG 344 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~ 344 (359)
+++++++.++|.+.+|+++++.||+||++..+
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 339 (539)
T 1mdb_A 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVNY 339 (539)
T ss_dssp SCCCHHHHTTHHHHTCSEEEEEEECTTSCEEE
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEcCCCCcccc
Confidence 99999999999999999999999999976433
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-48 Score=376.31 Aligned_cols=314 Identities=21% Similarity=0.273 Sum_probs=262.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC--------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
+++.+.|.++++.+|+++|+++.+ +++||+||.++++++|..|.+ .|+++||+|+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~ 81 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-----------------KGVRKGEHVG 81 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 578899999999999999999866 899999999999999999999 6999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCc
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (359)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.......+....++... .....
T Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (549)
T 3g7s_A 82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL 160 (549)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence 99999999999999999999999999999999999999999999999999988887776655544332222211 11111
Q ss_pred cccccc-chhhhcCCCC-CCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
...... .......... ++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++.. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~ 239 (549)
T 3g7s_A 161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V 239 (549)
T ss_dssp HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence 111100 0001112223 389999999999999999999999999999999888999999999999999999999865 7
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEe
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~ 310 (359)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+...... ...+++++|.+++
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~ 303 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT 303 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence 888999999999999999999999 888999999999999999987632111 1146789999999
Q ss_pred cCCCCCHHHHHHHHHH----hC---CcccccccCCcCccccccccc
Q 018211 311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 311 ~G~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~g~~~~~~~~ 349 (359)
||+++++++.++|.+. +| +++++.||+||++++++....
T Consensus 304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 349 (549)
T 3g7s_A 304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349 (549)
T ss_dssp ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG
T ss_pred CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc
Confidence 9999999999999988 56 899999999999987766544
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=372.42 Aligned_cols=311 Identities=16% Similarity=0.198 Sum_probs=256.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~ 92 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAE-----------------KGLGKGDTALVQLPNVAE 92 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHH-----------------CCCCCCCEEEEECCCCHH
Confidence 467899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-Cce-eccCCCCCCCCcc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKF-SLIPPVPNVSSET 153 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 153 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.... .....+..... ... .............
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL 172 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence 9999999999999999999999999999999999999999987543 23333322221 111 1111110000000
Q ss_pred ccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HH
Q 018211 154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL 230 (359)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~ 230 (359)
+.... ..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 00000 0011113446789999999999999999999999999999999999999999999999999999998864 57
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEe
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~ 310 (359)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~i~~ 314 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAA--------QYKDQIQSLKLLQV 314 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHT--------TTHHHHTTCCEEEE
T ss_pred HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchh--------hccccCCcceEEEE
Confidence 889999999999999999999998 888999999999999999987632 22346889999999
Q ss_pred cCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 311 GSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 311 ~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
||+++++++.++|.+.+|+++++.||+||++..+..
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 350 (544)
T 3o83_A 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR 350 (544)
T ss_dssp ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence 999999999999999999999999999999865443
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=369.63 Aligned_cols=306 Identities=30% Similarity=0.454 Sum_probs=252.3
Q ss_pred HHHHHHcCCCCCCceEEe---eCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
.+.|.+.++.+|+++|+. ++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 65 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVA-----------------RGLQVGDRVAAQTEKSVE 65 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCHH
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 457788889999999887 467899999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccc-ccccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFDQS 159 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.............+..... ..... .....
T Consensus 66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (503)
T 4fuq_A 66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGR-GSLTDAAAGAS 144 (503)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSC-SHHHHHHHTSC
T ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcc-cccchhhhcCC
Confidence 99999999999999999999999999999999999999999987655544444333332222221110 00000 00001
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++|+++|+|||||||.||||+++|+++.+.+......++++++|++++.+|++|.+++...++.+++.|++
T Consensus 145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~ 224 (503)
T 4fuq_A 145 EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGS 224 (503)
T ss_dssp SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCE
T ss_pred CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 11122345678999999999999999999999999999999999999999999999999999999976667788999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.++++.+++. ++ ++|++.++|+++..+++... ....+++++|.+++||+++++++
T Consensus 225 ~~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~ 284 (503)
T 4fuq_A 225 MIFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADT 284 (503)
T ss_dssp EEECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHH
T ss_pred EEEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHH
Confidence 999999999999998 55 79999999999999988633 22345789999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCccccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
.++|.+.+|+++++.||+||++..++..
T Consensus 285 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 312 (503)
T 4fuq_A 285 HREWSAKTGHAVLERYGMTETNMNTSNP 312 (503)
T ss_dssp HHHHHHHHSCCEEECCEETTTEECBCCC
T ss_pred HHHHHHHhCCCccceEcccccCcccccC
Confidence 9999999999999999999999876543
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=368.61 Aligned_cols=309 Identities=18% Similarity=0.270 Sum_probs=254.2
Q ss_pred ChHHHHHHHcCCCCCCceEEee----CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+++.+.|.++++.+|+++|+++ .++++||+||.++++++|..|.+ +|+++||+|+++++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ 80 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF 80 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 4688999999999999999993 56899999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCCC--CCCc
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPN--VSSE 152 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ 152 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.. +..+..... ....
T Consensus 81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (541)
T 1v25_A 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY 160 (541)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccH
Confidence 999999999999999999999999999999999999999999999998877766655443321 222221110 0000
Q ss_pred ccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH--HHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM--LTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
....... .......++++++|+|||||||.||||+++|+++...... ....++++++|++++.+|++|..++. .+
T Consensus 161 ~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~ 237 (541)
T 1v25_A 161 EEALGEE--ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LP 237 (541)
T ss_dssp HHHCCSC--CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HH
T ss_pred HHHhhcc--CCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HH
Confidence 0010000 0113345689999999999999999999999999877655 23456788999999999999999984 57
Q ss_pred HHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
+.+++.|+++++.+. +++..+++. ++++++|++.++|+++..+.+... ....++++||.++
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~ 299 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLV 299 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEE
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEE
Confidence 788999999999874 799999998 888999999999999999987622 2234688999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+||+++++++.++| +.+|+++++.||+||++++++.+.
T Consensus 300 ~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~ 337 (541)
T 1v25_A 300 VGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNF 337 (541)
T ss_dssp ECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECC
T ss_pred ECCCCCCHHHHHHH-HHhCCceeecccccccccceeccc
Confidence 99999999999999 668999999999999998766553
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=364.33 Aligned_cols=308 Identities=18% Similarity=0.239 Sum_probs=248.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC---------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (359)
+++.+.|.++++.+|+++|+++.+ +++||+||.++++++|+.|.+ .|+ +||+|
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~-~gd~V 85 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-----------------CGS-TGDRV 85 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-----------------SSC-TTCEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-----------------cCC-CCCEE
Confidence 578999999999999999999754 899999999999999999998 686 99999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeecCC---CCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC----ceeccC
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP 144 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (359)
+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++.+..+.+......... ....++
T Consensus 86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (480)
T 3t5a_A 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD 165 (480)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence 99999999999999999999999999999 78899999999999999999999877766654332211 111111
Q ss_pred CCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCC------CceEEEec
Q 018211 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL 218 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~l~~~ 218 (359)
.... ............++++++|+|||||||.||||+++|+++..++......++... +|++++.+
T Consensus 166 ~~~~--------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 237 (480)
T 3t5a_A 166 LLDL--------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237 (480)
T ss_dssp GSCT--------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred cccc--------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence 1100 011111233456789999999999999999999999999999988888888777 99999999
Q ss_pred CchhhHHHHHHHHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHH
Q 018211 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294 (359)
Q Consensus 219 pl~h~~~~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 294 (359)
|++|.+++...++.+++.|+++++.+.+ ++..+++. ++++++| +..+|+++..++......
T Consensus 238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~---- 302 (480)
T 3t5a_A 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD---- 302 (480)
T ss_dssp CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence 9999999877889999999999999754 88899988 9999999 889999988887642111
Q ss_pred HHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCccccccccc
Q 018211 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 295 ~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~~~~~ 349 (359)
......++++||.+++||+++++++.++|.+.++ .++++.||+||++++++....
T Consensus 303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 363 (480)
T 3t5a_A 303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKP 363 (480)
T ss_dssp GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCT
T ss_pred ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeeccc
Confidence 1223457899999999999999999999999984 379999999999987776554
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=371.00 Aligned_cols=302 Identities=18% Similarity=0.243 Sum_probs=249.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e 63 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE 63 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence 899999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.++++++++++++++..... ........... .............
T Consensus 64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~ 134 (512)
T 3fce_A 64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSED---NLKDIFFTHKGNT 134 (512)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETH---HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechh---hhhhhcccccccC
Confidence 99999999999999999999999999999999999999998753210 00000000000 0000000000001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|..++. .++.+++.|+++
T Consensus 135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 1122345678999999999999999999999999999999888899999999999999999999985 588999999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. +++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence 99986 688999998 788999999999999999887532 223568899999999999999
Q ss_pred HHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++.++|.+.+ ++++++.||+||++++++..
T Consensus 276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 306 (512)
T 3fce_A 276 EVARKLIERFPKATIMNTYGPTEATVAVTGI 306 (512)
T ss_dssp HHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHHHCCCCEEEeCcccChhhhheeeE
Confidence 9999999998 89999999999999876643
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=370.40 Aligned_cols=313 Identities=20% Similarity=0.218 Sum_probs=253.7
Q ss_pred ChHHHHHHHcCCCCCCceEEe---e--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
+|+.+.|.++++.+|+++|++ + .++++||+||.++++++|..|.+ +|+++||+|++++
T Consensus 20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS 82 (550)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence 478899999999999999976 3 46899999999999999999999 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceeccCCCCCCCCcc
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET 153 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 153 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+. ..+.++.........
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 999999999999999999999999999999999999999999999999888777766555432 222222211111110
Q ss_pred cccccc-----------hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecC
Q 018211 154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP 219 (359)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p 219 (359)
...... ...+.....++++++|+|||||||.||||+++|+++...+...... +++.++|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 000000 0011112235789999999999999999999999999887766554 46778999999999
Q ss_pred chhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 220 l~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
++|.++++ .++.+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ...
T Consensus 243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~ 303 (550)
T 3rix_A 243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK 303 (550)
T ss_dssp TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence 99999985 57888999999999999999999999 888999999999999999987632 233
Q ss_pred hhhccceEEEecCCCCCHHHHHHHHHHhCCc-ccccccCCcCccccccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~TE~g~~~~~~~~ 349 (359)
.++++||.+++||+++++++.++|.+.++.. +++.||+||++++++....
T Consensus 304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~ 354 (550)
T 3rix_A 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE 354 (550)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT
T ss_pred cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC
Confidence 5688999999999999999999999999875 9999999999987766544
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=367.51 Aligned_cols=310 Identities=17% Similarity=0.220 Sum_probs=253.9
Q ss_pred hHH-HHHHHcCCCCCCceEEee-----CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVF-KAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~-~~l~~~a~~~p~~~ai~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
|+. +.|.++|+.+|+++|+++ .++++||+||.++++++|+.|.+ +|+++||+|++++
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-----------------~Gv~~Gd~V~l~~ 118 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-----------------HGIGKGDYVMLTL 118 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEEC
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEc
Confidence 444 889999999999999996 24799999999999999999999 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH--HHHHHHhhhcC---CceeccCCCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSG---AKFSLIPPVPNVS 150 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. +.+.......+ .....+... ...
T Consensus 119 ~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (580)
T 3etc_A 119 KSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLE 197 (580)
T ss_dssp TTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCT
T ss_pred CCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-ccc
Confidence 999999999999999999999999999999999999999999999987654 55554443332 222222211 011
Q ss_pred Ccccccccc----h----hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchh
Q 018211 151 SETTVFDQS----Q----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222 (359)
Q Consensus 151 ~~~~~~~~~----~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 222 (359)
......+.. . ........++|+++|+|||||||.||||.++|.+++..+.......++.+++++++..|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 111110000 0 00012456789999999999999999999999999888776666678889999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEc--CCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHh
Q 018211 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 300 (359)
..+.+..++.++..|+++++. ..+++..+++. ++++++|+++++|++++.+.+. .....
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~ 338 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHY 338 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccC
Confidence 999877788899999999988 57899999999 8889999999999999999875 12345
Q ss_pred hhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 301 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++||.+++||+++++++.++|.+.+|+++++.||+||+++.++..+
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 689999999999999999999999999999999999999987766544
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=363.11 Aligned_cols=302 Identities=20% Similarity=0.259 Sum_probs=247.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
||+.+.|.++++.+|+++|+.+. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-----------------~Gv~~gd~V~i~~~~~ 64 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-----------------DGLRPQQRVAVVAPNS 64 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCC
Confidence 57899999999999999999987 7899999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEe--ccccHHHH-HHHhhhcCCceeccCCCCCCCCcccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV 155 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++++ +....+.+ ... .......+..... .....
T Consensus 65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~ 139 (504)
T 1t5h_X 65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGARIIFLGDLVR--DGEPY 139 (504)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCEEEEGGGTEE--TTEEC
T ss_pred HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccceeEEecchhh--cCccc
Confidence 9999999999999999999999999999999999999999999 76654443 221 1111111110000 00000
Q ss_pred cccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhcc--CCCceEEEecCchhhHHHHHHHHHh
Q 018211 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
............++++++|+|||||||.||||.++|+++...+......+++ .++|++++.+|++|..++...++.+
T Consensus 140 -~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 140 -SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp -CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred -ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 0000011134467899999999999999999999999999988888888888 7899999999999999986668889
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.+++..+++. ++++++|++.++|++++.+.+..... ....++++||.+++||+
T Consensus 219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAHA------GSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCCT------TCCCCCTTCCEEEECCT
T ss_pred HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhccc------cccccCccccEEEEcCC
Confidence 999999999999999999998 78899999999999999998753110 11235789999999999
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGC 341 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g 341 (359)
++++++.++|.+.++.++++.||+||++
T Consensus 283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 283 TMPDAVLETVHQHLPGEKVNIYGTTEAM 310 (504)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred cCCHHHHHHHHHhcCcceeeeecccccc
Confidence 9999999999999999999999999994
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=360.48 Aligned_cols=307 Identities=19% Similarity=0.248 Sum_probs=251.7
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 68 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLR-----------------DGVHTGDRVAILSQNCSE 68 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCHH
T ss_pred CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence 578999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCCCCCcccccc--
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVSSETTVFD-- 157 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 157 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......... ...+.... ..........
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-GSGPFAPFKDLA 147 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-CCSSCEEGGGTC
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-CCcChhhHhhcc
Confidence 9999999999999999999999999999999999999999999887764444333322 11111111 1111111111
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++|+++|+|||||||.||||.++|+++...+......++++++|++++.+|++|.+++.. ++.++..|
T Consensus 148 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~ 226 (509)
T 3ivr_A 148 SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAG 226 (509)
T ss_dssp CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhC
Confidence 11112233456789999999999999999999999999999999889999999999999999999999965 44444555
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.++...+++..+++. ++++++|++.++|+++..+++.. ...+++++|.+..+|++
T Consensus 227 g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~--- 283 (509)
T 3ivr_A 227 GASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP--- 283 (509)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH---
T ss_pred CcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh---
Confidence 55555558899999999 88899999999999999998763 23467899999999987
Q ss_pred HHHHHHHHHh-CCcccccccCCcCccccccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
++.+.+.+.+ ++++++.||+||++++++....
T Consensus 284 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 316 (509)
T 3ivr_A 284 ETIERFEATCPNATFWATFGQSETSGLSTFAPY 316 (509)
T ss_dssp HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG
T ss_pred HHHHHHHHhcCCCeEEcccCccccccccccCcc
Confidence 8889999888 9999999999999987665543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-46 Score=363.04 Aligned_cols=309 Identities=20% Similarity=0.234 Sum_probs=254.0
Q ss_pred hHHH-HHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 2 ~i~~-~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
|+.+ .|.++++.+ +++|+++ .++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 87 (548)
T 2d1s_A 26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC 87 (548)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence 6778 888888889 9999997 57899999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--CceeccCCCCC---CCCcc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET 153 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 153 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+ ..+..+..... .....
T Consensus 88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
T 2d1s_A 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD 167 (548)
T ss_dssp TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999987776665543332 12222221100 00001
Q ss_pred cccccc-hh-hhcCCC------CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchh
Q 018211 154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH 222 (359)
Q Consensus 154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h 222 (359)
...... .. ...... .++++++|+|||||||.||||.++|+++...+...... +++.++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 110000 00 000111 23899999999999999999999999999988777666 67889999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhh
Q 018211 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (359)
.+++...++.++ .|+++++.+.++++.+++. ++++++|++.++|+++..+.+... ....++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l 308 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL 308 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence 999976567777 9999999999999999999 888999999999999999987532 123467
Q ss_pred ccceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 303 ~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++||.+++||+++++++.++|.+.+ +.++++.||+||++++++..
T Consensus 309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 354 (548)
T 2d1s_A 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354 (548)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence 8999999999999999999999999 78999999999999876554
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=367.13 Aligned_cols=313 Identities=18% Similarity=0.208 Sum_probs=250.4
Q ss_pred HHHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+.+.|.++++.+|+++|+++ .++++||+||.++++++|+.|++ +|+++||+|+++++
T Consensus 78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~ 140 (652)
T 1pg4_A 78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP 140 (652)
T ss_dssp HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence 45667788888999999997 34789999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcC----Cceecc
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI 143 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~ 143 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... .+.+.+.....+ ..++.+
T Consensus 141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999997643 233333332221 122222
Q ss_pred CCCCCCC---Cc-----cccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCCce
Q 018211 144 PPVPNVS---SE-----TTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (359)
Q Consensus 144 ~~~~~~~---~~-----~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~ 213 (359)
....... .. .+.... ..........++++++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence 2111000 00 000000 000112234568999999999999999999999999887664 4455688999999
Q ss_pred EEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 214 ~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+++..|++|+.++.+.++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 99999999999986678899999999999875 588999999 8889999999999999999876321
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
.....++++||.+++||+++++++.++|.+.+| +++++.||+||++++++...
T Consensus 371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 426 (652)
T 1pg4_A 371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426 (652)
T ss_dssp ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC
T ss_pred ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCC
Confidence 112346899999999999999999999999888 89999999999998766543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=360.88 Aligned_cols=300 Identities=17% Similarity=0.277 Sum_probs=253.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+. .|.++|++|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~ 64 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH 64 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence 8999999999999999999999999999999999999999999884 478899999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccc--c
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--Q 158 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++..... .........+ ....... .
T Consensus 65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~ 131 (511)
T 3e7w_A 65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV-------SAEELLENEG 131 (511)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE-------EHHHHHTSCS
T ss_pred HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee-------cHhhhhcccc
Confidence 99999999999999999999999999999999999999998653210 0000000000 0000000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..+++ .++.+++.|+
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 210 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG 210 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence 001112234568999999999999999999999999999999888889999999999999999999985 6889999999
Q ss_pred EEEEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCC
Q 018211 239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (359)
Q Consensus 239 ~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 315 (359)
++++.+. +++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence 9999986 688889988 788999999999999999987632 2234678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCCcCcccccccc
Q 018211 316 PLPVMQQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++.+++.+.+ ++++++.||+||+++.++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 306 (511)
T 3e7w_A 273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVE 306 (511)
T ss_dssp CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEE
T ss_pred CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEe
Confidence 999999999999 899999999999998766543
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=359.26 Aligned_cols=309 Identities=22% Similarity=0.281 Sum_probs=244.8
Q ss_pred HHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~ 82 (359)
+.+.|.++++ +|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|+++++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRT-----------------LGVHPEERILLVMLDTVALP 87 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSTHHH
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHHH
Confidence 5677888888 99999999988999999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC---CceeccCCCCC----CCCcccc
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPN----VSSETTV 155 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~ 155 (359)
+++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+........ ..+........ .......
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence 9999999999999999999999999999999999999999887766655433211 11211111100 0000110
Q ss_pred cc-cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHH-HHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
.. ...........++|+++|+|||||||.||||+++|+++ ..........+++.++|++++..|++|.+++...++.+
T Consensus 168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 00 00111122346789999999999999999999999999 55555445567888999999999999999997777889
Q ss_pred hhcCcEEEEc-CCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 234 l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+..|+++++. +.+++..+++. +.++++|++.++|+++..++....... ....++|.+++||
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~--------~~~~~lr~~~~gG 309 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNLPA--------RADVAIRICTSAG 309 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTCCC--------GGGCCCCEEEECS
T ss_pred HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccccc--------ccCCceEEEEEcC
Confidence 9999999988 67899999998 788999999999999999987532111 1123899999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.++|.+.+|+++++.||+||++++++..
T Consensus 310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 344 (529)
T 2v7b_A 310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN 344 (529)
T ss_dssp SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEEC
T ss_pred CCCCHHHHHHHHHHhCCceeeeEchhhcCceeecc
Confidence 99999999999999999999999999997665444
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=361.71 Aligned_cols=311 Identities=17% Similarity=0.198 Sum_probs=254.3
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++ |+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~gd~V~l~~~~s~~ 87 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRR-----------------QGIKPGETALVQLGNVAE 87 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence 467888999887 9999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-CceeccCCCCCCCCccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT 154 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (359)
+++++|||+++|++++|+++.++.+++.++++++++++++++.... ........... .................
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence 9999999999999999999999999999999999999999987543 22222222211 11111111111000000
Q ss_pred cc-ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHHH
Q 018211 155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (359)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~ 232 (359)
.. ............++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence 00 001111223445689999999999999999999999999999999889999999999999999999988754 5788
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+..... ....++++||.+++||
T Consensus 248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG 311 (617)
T ss_dssp HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence 9999999999999999999888 78899999999999999998753211 1123678999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+++++++.++|.+.+|+++++.||+||++..++.
T Consensus 312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 345 (617)
T 3rg2_A 312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTR 345 (617)
T ss_dssp SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECC
T ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCcceeeccc
Confidence 9999999999999999999999999999865544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=360.26 Aligned_cols=304 Identities=22% Similarity=0.290 Sum_probs=246.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ . +||+|+++++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e 60 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ 60 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999987 4 89999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCC-CCC-------C---
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPN-------V--- 149 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~--- 149 (359)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+..................... ... .
T Consensus 61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999875432211110000000000000 000 0
Q ss_pred CCccccc--ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHH
Q 018211 150 SSETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 227 (359)
....... ............++|+++|+|||||||.||||.++|+++...+......+++.++|++++.+|++|.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 0000000 00111123345679999999999999999999999999999999988899999999999999999999996
Q ss_pred HHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceE
Q 018211 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (359)
. ++.+++.|+++++.+.++++.+++. ++++++|++.++|++++.+.+.... ...+||.
T Consensus 221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~ 278 (501)
T 3ipl_A 221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK 278 (501)
T ss_dssp H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence 4 8889999999999999999999999 8889999999999999999875321 1127999
Q ss_pred EEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++||+++++++.+++.+ +|+++++.||+||+++.+...
T Consensus 279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~ 317 (501)
T 3ipl_A 279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTA 317 (501)
T ss_dssp EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeec
Confidence 999999999999999987 699999999999998755443
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=365.63 Aligned_cols=313 Identities=17% Similarity=0.232 Sum_probs=250.1
Q ss_pred HHHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHh-hCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
+.+.|.++++.+|+++|+++ .++++||+||.++++++|+.|+ + +|+++||+|+|++
T Consensus 84 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~~ 146 (663)
T 1ry2_A 84 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVYM 146 (663)
T ss_dssp HHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEc
Confidence 45777788888999999997 3478999999999999999998 7 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcCC--ceeccC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIP 144 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~ 144 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... .+.+.+.....+. .++.+.
T Consensus 147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 226 (663)
T 1ry2_A 147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR 226 (663)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999997653 2233333322221 122222
Q ss_pred CCC--CCC--Cc-----ccccc-cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCCce
Q 018211 145 PVP--NVS--SE-----TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (359)
Q Consensus 145 ~~~--~~~--~~-----~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~ 213 (359)
... ... .. .+... ...........++++++|+|||||||.||||+++|.+++.... .....+++.++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 306 (663)
T 1ry2_A 227 KTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDV 306 (663)
T ss_dssp SSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCE
T ss_pred cCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcE
Confidence 111 000 00 00000 0000112234568999999999999999999999999887654 3455678999999
Q ss_pred EEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 214 ~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+++..|++|+.++.+.++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+....
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~~ 376 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS 376 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCcc
Confidence 99999999999986678899999999999874 578899999 8889999999999999999875321
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
. ....++++||.+++||+++++++.+++.+.+| +++++.||+||+++.++...
T Consensus 377 ~------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 432 (663)
T 1ry2_A 377 Y------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 432 (663)
T ss_dssp S------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred c------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccC
Confidence 0 12346899999999999999999999999888 89999999999997666543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=361.44 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=244.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|++++
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 90 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES 90 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 68899999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|++++|+++.++.+++.++++++++++++++........ ......+.. .......
T Consensus 91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~~~---------~~~~~~~ 155 (620)
T 4dg8_A 91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPVRH---------LPAAPAS 155 (620)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEGGG---------CCCCCCC
T ss_pred HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeeecc---------CCcCCcc
Confidence 9999999999999999999999999999999999999996653211000 000000000 0001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++..|++|+.+++ .++.+|+.|++++
T Consensus 156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 1122345789999999999999999999999999876654 4567888999999999999999986 5899999999999
Q ss_pred EcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+ .+++..+++. +.++++|++.++|++++.+.+. ...++++||.+++||+++++++
T Consensus 234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~ 292 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH 292 (620)
T ss_dssp ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence 964 5789999988 8899999999999999998753 1245789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+++.+.+ +++++|.||+||++++++..
T Consensus 293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 321 (620)
T 4dg8_A 293 VRRALLRHPRLHLVNGYGPTENTTFTCCH 321 (620)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHhCCCeEEEeeEchhhhhhheEEE
Confidence 99998876 89999999999999876543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=380.09 Aligned_cols=312 Identities=20% Similarity=0.277 Sum_probs=261.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+++.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-----------------LGVNQNDVVMLLLPNC 123 (979)
T ss_dssp SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEeCCC
Confidence 57899999999999999999985 6899999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCC------c
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS------E 152 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 152 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.............++....... .
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 9999999999999999999999999999999999999999999987766555544433333333332111100 0
Q ss_pred ccccccc----hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhH
Q 018211 153 TTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH 224 (359)
Q Consensus 153 ~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~ 224 (359)
....... .........++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++.+|++|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 1111100 111223456799999999999999999999999999988766543 35678899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q 018211 225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (359)
Q Consensus 225 ~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (359)
++...++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....++++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~ 345 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS 345 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence 997778889999999999999999999998 888999999999999999987632 23346889
Q ss_pred ceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 305 l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
||.+++||+++++++.++|.+.+ ++++++.||+||++++++.+
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 389 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS 389 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhC
Confidence 99999999999999999999998 89999999999999876544
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=358.07 Aligned_cols=306 Identities=18% Similarity=0.201 Sum_probs=248.5
Q ss_pred HHHHHHcCCC-----CCCceEEeeC-----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccc-cCCCCCeEE
Q 018211 4 FKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVL-AGGCGARIG 72 (359)
Q Consensus 4 ~~~l~~~a~~-----~p~~~ai~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~-gv~~gd~V~ 72 (359)
.+.|.++++. +|+++|+++. ++++||+||.++++++|..|.+ . |+++||+|+
T Consensus 41 ~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-----------------~~Gv~~gd~V~ 103 (570)
T 3c5e_A 41 SDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-----------------ACGLQRGDRVA 103 (570)
T ss_dssp HHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-----------------TTCCCTTCEEE
T ss_pred HHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-----------------ccCCCCCCEEE
Confidence 4667777776 9999999972 3789999999999999999998 6 999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCC--C
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVP--N 148 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~ 148 (359)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.. ...+.... .
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG 183 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccc
Confidence 9999999999999999999999999999999999999999999999999988877776654443321 12222100 0
Q ss_pred CCCccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH--HHHHHHHhhccCCCceEEEecCchhhHH
Q 018211 149 VSSETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVHG 225 (359)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 225 (359)
.....+.... ..........++++++|+|||||||.||||.++|+ ++. ..... ..++++++|++++..|++|..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~ 261 (570)
T 3c5e_A 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILN 261 (570)
T ss_dssp SEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHH
T ss_pred cccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHH
Confidence 0000000000 00011123457899999999999999999999999 554 33333 6678889999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 018211 226 LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303 (359)
Q Consensus 226 ~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (359)
++..++.++..|+++++.+ .+++..+++. ++++++|++.++|++++.+.+.. ....+++
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~~ 322 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKFP 322 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCCT
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------ccccccc
Confidence 8767889999999999987 6899999998 88899999999999999998751 1234578
Q ss_pred cceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 304 ~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+||.+++||+++++++.++|.+.+|+++++.||+||++++++..
T Consensus 323 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 366 (570)
T 3c5e_A 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS 366 (570)
T ss_dssp TCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred cceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence 99999999999999999999998999999999999999765543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=357.57 Aligned_cols=293 Identities=20% Similarity=0.289 Sum_probs=244.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|++++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~ 138 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVG-----------------LGVAPGTLVGVHLERGFDM 138 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 57899999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+. ......+.... .......
T Consensus 139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~ 205 (570)
T 4gr5_A 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEA-------ASDAPAG 205 (570)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeeccc-------ccccccc
Confidence 9999999999999999999999999999999999999999875322111 01111111000 0001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++|+++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..+.+ .++.+++.|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 1223456789999999999999999999999999776544 3456788999999999999977764 6888999999999
Q ss_pred EcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+ .+++..+++. ++++++|++.++|+++..+.+.. ...+++||.+++||+++++++
T Consensus 284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~ 342 (570)
T 4gr5_A 284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH 342 (570)
T ss_dssp ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence 987 4688899988 88899999999999999998652 235789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+++.+.+ ++++++.||+||++++++..
T Consensus 343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 371 (570)
T 4gr5_A 343 VAKARRDHPALRLGNGYGPAESMGFTTHH 371 (570)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHhCCCcEEEEeechhhheeeeeee
Confidence 99999887 89999999999998876654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=363.17 Aligned_cols=309 Identities=18% Similarity=0.261 Sum_probs=254.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+|+.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~gv~~gd~V~i~~~ 73 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-----------------EGAKPGDRVLLLFA 73 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 57899999999999999999863 5899999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCC---HHHHHHHHhhCCceEEEeccccHHHHHHHh-hhcCC--ceeccCCCCCCC
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGA--KFSLIPPVPNVS 150 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 150 (359)
|++++++++|||+++|++++|+++..+ .+++.++++.+++++++++.+....+.... ...+. ....+.
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 147 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA------ 147 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE------
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee------
Confidence 999999999999999999999999884 578999999999999999987655443221 11110 000000
Q ss_pred Cccccc-ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHH
Q 018211 151 SETTVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229 (359)
Q Consensus 151 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 229 (359)
..... ............++|+++|+|||||||.||||+++|++++..+......+++.++|++++++|++|.+++...
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 226 (590)
T 3kxw_A 148 -LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGC 226 (590)
T ss_dssp -GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTT
T ss_pred -chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHH
Confidence 00000 0111112334567899999999999999999999999999999999999999999999999999999999766
Q ss_pred HHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 018211 230 LLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305 (359)
Q Consensus 230 ~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l 305 (359)
++.+++.|+++++.+.+ ++..+++. +.++++|++.++|.++..+.+..... .....++++|
T Consensus 227 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~l 291 (590)
T 3kxw_A 227 ILTPIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSW 291 (590)
T ss_dssp THHHHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTC
T ss_pred HHHHHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhh
Confidence 88999999999999865 78888888 88899999999999999987753211 1223568999
Q ss_pred eEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCcccccccc
Q 018211 306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 306 ~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~~~~ 348 (359)
|.+++||+++++++.++|.+.++ .++++.||+||++++++...
T Consensus 292 r~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~ 340 (590)
T 3kxw_A 292 VTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGT 340 (590)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECC
T ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeeccc
Confidence 99999999999999999999883 47999999999998776543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=357.82 Aligned_cols=295 Identities=20% Similarity=0.318 Sum_probs=243.6
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~e 101 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIE-----------------KGIGKDTLVGIMMEKSID 101 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence 368899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+..+.. ......+.. .... ....
T Consensus 102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------~~~~ 172 (563)
T 1amu_A 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIK------IREG 172 (563)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTT------TSCC
T ss_pred HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhc------cccC
Confidence 999999999999999999999999999999999999999999876554432211 111111111 0000 0001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++..|++|..+++ .++.+++.|+++
T Consensus 173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 251 (563)
T 1amu_A 173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL 251 (563)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence 1112234568999999999999999999999999999888888888999999999999999999985 688899999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. +++..+++. +.++++|++.++|+++..+... .+++||.+++||+++++
T Consensus 252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP 307 (563)
T ss_dssp EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence 99886 678888888 7889999999999998877542 36789999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++.++|.+ ++++++.||+||++++++.+.
T Consensus 308 ~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~ 336 (563)
T 1amu_A 308 SLVNKWKE--KVTYINAYGPTETTICATTWV 336 (563)
T ss_dssp HHHHHHTT--TSEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHHh--CCeEEEEECcCHHhHhheeee
Confidence 99999876 489999999999998766543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=349.46 Aligned_cols=294 Identities=33% Similarity=0.506 Sum_probs=244.1
Q ss_pred ChHHHHHHHcCCCCCC-ceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~-~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
+++.+.|.++++.+|+ ++|++++++++||+||.++++++|..|.. |++|+++++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~ 79 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM 79 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence 4677888899999998 99999999999999999999999987753 789999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC-CceeccCCCCCCCCccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ 158 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (359)
+++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ...... .....+... .
T Consensus 80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~-----------~ 143 (505)
T 3nyq_A 80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDVR-----------A 143 (505)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCTT-----------C
T ss_pred HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhccccccccccc-----------c
Confidence 99999999999999999999999999999999999999999986421 000000 111111000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++.++..|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 01112234567899999999999999999999999999999999999999999999999999999998777899999999
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
++++.+.+++..+++. + ++++|+++++|+++..+.+...... ....+++++|.+++||++++++
T Consensus 224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~l~~lr~i~~gg~~l~~~ 287 (505)
T 3nyq_A 224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADP-----ELAKALAGARLLVSGSAALPVH 287 (505)
T ss_dssp EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCH-----HHHHHHHHCSEEEECSSCCCHH
T ss_pred EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCc-----hhhcccccceEEEECCCCCCHH
Confidence 9999999999999988 6 7899999999999999987533221 1234678999999999999999
Q ss_pred HHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 319 VMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.+++.+.+|+++++.||+||+++.++...
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 317 (505)
T 3nyq_A 288 DHERIAAATGRRVIERYGMTETLMNTSVRA 317 (505)
T ss_dssp HHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred HHHHHHHhcCCeeecccchhhcccccccCC
Confidence 999999999999999999999997665543
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=352.75 Aligned_cols=300 Identities=16% Similarity=0.253 Sum_probs=246.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.++++.+|+++|+.+.++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDS-----------------LALLAKSPVLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCCEEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence 468999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.. .....+... .........
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~ 135 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSLSEI-----ESAKLAEMP 135 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEHHHH-----HHHHHHTCC
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccchhhh-----hhcccccCC
Confidence 999999999999999999999999999999999999999998753211100 000000000 000000001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh--hccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
........++|+++|+|||||||.||||+++|+++.......... ++..+++++++..|++|..++. .++.++..|+
T Consensus 136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 112234567899999999999999999999999999887776665 6778999999999999999885 5888899999
Q ss_pred EEEEcCCC---ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCC
Q 018211 239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (359)
Q Consensus 239 ~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 315 (359)
++++.+.+ ++..+++. +.++++|++.++|+++..+..... ....++++||.+++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l 276 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL 276 (521)
T ss_dssp EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence 99999864 78888888 788999999999999998877532 2234678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 316 PLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++++.+++.+.+ ++++++.||+||++++++.+
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 309 (521)
T 3l8c_A 277 TVSTARKLFERFPSAKIINAYGPTEATVALSAI 309 (521)
T ss_dssp CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred CHHHHHHHHHHCCCceEEeCcCccHHhhhhcee
Confidence 999999999998 89999999999999876653
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=347.54 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=236.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC----------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~ 70 (359)
||+.+.|.++++.+|+++|+++.+ +++||+||.++++++|+.|.+ .|+ +||+
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~g~-~gd~ 81 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-----------------ASL-HGRA 81 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-----------------TTC-SSCE
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-----------------cCC-CCCE
Confidence 678999999999999999998632 789999999999999999998 688 7999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC
Q 018211 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (359)
Q Consensus 71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+. .......+.... ..
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~-~~ 155 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LPPETKVLDTKN-QS 155 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CCTTCEEEETTC-HH
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cCccceeecccc-hh
Confidence 999999999999999999999999999999999999999999999999999864322110 000000000000 00
Q ss_pred CcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh--------hccCCCceEEEecCchh
Q 018211 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH 222 (359)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~h 222 (359)
..................++++++|+|||||||.||||+++|+++...+..+... +.+...+++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 0000000001111223446788999999999999999999999999877765543 34678899999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEcCCCC-hhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhh
Q 018211 223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 301 (359)
..++. .++.++..|+++++.+.+. ++.+++. ++++++|++.++|++++.+... ..+
T Consensus 236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~ 292 (562)
T 3ite_A 236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED 292 (562)
T ss_dssp THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence 98875 5788899999999987654 4556666 7889999999999998876443 236
Q ss_pred hccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 302 ~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+++||.+++||+++++++.++|.+.+++++++.||+||+++.++...
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 339 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGR 339 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEE
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeee
Confidence 78999999999999999999999878999999999999988766544
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=364.96 Aligned_cols=298 Identities=22% Similarity=0.315 Sum_probs=246.2
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ .|+++|++|+|+++|++++
T Consensus 465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 527 (1304)
T 2vsq_A 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQK-----------------HGAGKGSVVALYTKRSLEL 527 (1304)
T ss_dssp CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHh-----------------cCcCCcCEEEEEeCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|+++||++|.++.+++.++++++++++++++.+....+..+.. ......++.. ... .....
T Consensus 528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~~~------~~~-~~~~~ 598 (1304)
T 2vsq_A 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--TGTTLFIDDQ------TRF-EEQAS 598 (1304)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--CSEEEESSCG------GGG-GSCSS
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--CCcEEEeccc------ccc-ccccC
Confidence 99999999999999999999999999999999999999998754322111100 0111111110 000 00111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+. ......++++++|+++...|++|+.+.+ .++.+|+.|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence 1223456789999999999999999999999999865 3344567888999999999999998875 6899999999999
Q ss_pred EcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
+.+. +++..+++. +.++++|++.++|++++.+.+.. ...+++||.+++||++++++
T Consensus 677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP 735 (1304)
T ss_dssp ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence 9974 688888888 78899999999999999987641 12367899999999999999
Q ss_pred HHHHHHHHh-CCcccccccCCcCcccccccc
Q 018211 319 VMQQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 319 ~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.++|.+.+ +.+++|.||+||+++.++...
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 766 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHV 766 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeee
Confidence 999999888 479999999999998766543
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=218.33 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=137.7
Q ss_pred CCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChh
Q 018211 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249 (359)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~ 249 (359)
+++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++|+. .++.++..|+++++.+...
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~-- 113 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA-- 113 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS--
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc--
Confidence 7899999999999999999999999999999999999999999999999999999986 5788899999999886421
Q ss_pred HHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC
Q 018211 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329 (359)
Q Consensus 250 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 329 (359)
+.++. ++++++|++.++|+++..+++... ...++++||.+++||+++++++.+++.+ +|+
T Consensus 114 ~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~ 173 (358)
T 4gs5_A 114 NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LAM 173 (358)
T ss_dssp CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CSS
T ss_pred cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cCc
Confidence 22333 889999999999999999987632 2346899999999999999999999986 599
Q ss_pred cccccccCCcCcccccccccc
Q 018211 330 RLLERYGMTEGCTKGRHCWQS 350 (359)
Q Consensus 330 ~v~~~YG~TE~g~~~~~~~~~ 350 (359)
++++.||+||+++.++....+
T Consensus 174 ~~~~~YG~TEt~~~~~~~~~~ 194 (358)
T 4gs5_A 174 PVYQSYGMTETVSHVALKALN 194 (358)
T ss_dssp CEEEEEECGGGSSEEEEEECS
T ss_pred eEEeccccccccceeeccccc
Confidence 999999999999876665443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=206.17 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=136.5
Q ss_pred CCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH---hhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCC
Q 018211 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246 (359)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~ 246 (359)
+++++|+|||||||.||+|.++|+++......... .+++.++|++++..|++|..+.+..++.++..|+++++.+.+
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 78899999999999999999999999877665533 458889999999999987777666788899999999999988
Q ss_pred ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHH
Q 018211 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI 326 (359)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~ 326 (359)
+++.+++. ++++++|++.++|+++..+.+....... ...+++||.+++||+++++++.++|.+.
T Consensus 166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 229 (436)
T 3qov_A 166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEGI------DPRETTLKTLVIGAEPHTDEQRRKIERM 229 (436)
T ss_dssp CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTTC------CTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcCC------CcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence 99999998 7889999999999999999876322110 1136899999999999999999999999
Q ss_pred hCCcccccccCCcCccc
Q 018211 327 TGHRLLERYGMTEGCTK 343 (359)
Q Consensus 327 ~~~~v~~~YG~TE~g~~ 343 (359)
||+++++.||+||+++.
T Consensus 230 ~g~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 230 LNVKAYNSFGMTEMNGP 246 (436)
T ss_dssp HTSEEEEEEEEGGGTEE
T ss_pred hCccEEecCcchhhcCC
Confidence 99999999999999654
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=199.40 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=135.4
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH---HhhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++........ ..+++.++|++++..|+ +|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 3678899999999999999999999999998877543 45677899999999999 99999865 555688999 777
Q ss_pred cCCCChh-----------------------HHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
+..+++. .+++. ++++++|++.++|+++..+++.. ....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence 7777777 66666 78899999999999999998862 2233
Q ss_pred hhhccceEEEecCCCCCHHHHHHHH-HHh-CCcccccccCCcCccccccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
.++++||.+++||+++++++.+++. +.| |+++++.||+||+++++..++.
T Consensus 228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 5678999999999999999999999 888 8999999999999987755543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=197.19 Aligned_cols=159 Identities=20% Similarity=0.124 Sum_probs=134.8
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH---HhhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++........ ..+++.++|++++..|+ +|..++. .++.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence 4568899999999999999999999999987665443 35688899999999998 6777764 57888999999999
Q ss_pred cCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHH
Q 018211 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (359)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~ 322 (359)
.+.++++.+++. ++++++|++.++|+++..+.+....... ...++++|.+++||+++++++.++
T Consensus 166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~ 229 (437)
T 2y27_A 166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQGL------DPVQSSLRIGIFGAEPWTNDMRVA 229 (437)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTTC------CGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCCeeEEEEcCccCCHHHHHH
Confidence 988899999998 7889999999999999999876321110 113578999999999999999999
Q ss_pred HHHHhCCcccccccCCcCcc
Q 018211 323 WETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 323 ~~~~~~~~v~~~YG~TE~g~ 342 (359)
+.+.+|+++++.||+||+++
T Consensus 230 ~~~~~g~~v~~~YG~TE~~g 249 (437)
T 2y27_A 230 IEQRMGIDAVDIYGLSEVMG 249 (437)
T ss_dssp HHHHHTSEEEEEEEETTTTE
T ss_pred HHHHHCcCEEecCCchhhcC
Confidence 99989999999999999843
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=197.35 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=134.4
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH---hhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++......... .+++.++|++++..|+ +|..++ ..++.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence 45688999999999999999999999998876554433 5788899999999999 466665 457888999999999
Q ss_pred cCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHH
Q 018211 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (359)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~ 322 (359)
.+.++++.+++. ++++++|++.++|+++..+.+....... ...+++||.+++||+++++++.++
T Consensus 168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~ 231 (443)
T 2y4o_A 168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQGM------DPAESSLKIGIFGAEPWTQALRNE 231 (443)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTTC------CGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcCC------CcccCCceEEEECCCcCCHHHHHH
Confidence 998899999998 7889999999999999999875321110 113589999999999999999999
Q ss_pred HHHHhCCcccccccCCcCcc
Q 018211 323 WETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 323 ~~~~~~~~v~~~YG~TE~g~ 342 (359)
|.+.+|+++++.||+||+++
T Consensus 232 ~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 232 VETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp HHHHHTCEEEEEEEETTTTE
T ss_pred HHHHhCcCEEeccCchhhcC
Confidence 99999999999999999854
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.093 Score=50.42 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCCCCcEEEEecCCCC-CCcchhhhhhhHHHH
Q 018211 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (359)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 3456778899999999 789999999998755
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=1.5 Score=40.43 Aligned_cols=90 Identities=10% Similarity=0.126 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC--CHHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|...+...+..+++.+.. .|+.++|++....+. ....+...++.+..|+..++.+. .
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~ 169 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-G 169 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-C
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-C
Confidence 468999998888888877776 689999999998885 34455567888899999887765 4
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
+.+.+...+++.++.+++........+.+.
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 788888899999999999887766655443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.16 E-value=1.7 Score=40.12 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=71.1
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC--HHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|...+...+..+++.+.. .|+.++|++....+-+ ...+...++.+..|+..++.+..
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 171 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG- 171 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence 478999998888888877776 6899999999988853 45556678888999998887654
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
..+.+...+++.++.+++........+.+
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 77888888999999999988776655544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=1.7 Score=39.95 Aligned_cols=90 Identities=17% Similarity=0.066 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC--CHHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|.+.+...+..+++.+.. .++.++|++....+- ....+...++.+..|+..++.+..
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 478999999988888888877 689999999998874 355566778889999998887654
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
..+.+...+++.++.+++........+...
T Consensus 166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 678888889999999999888766655544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=82.06 E-value=18 Score=33.69 Aligned_cols=99 Identities=11% Similarity=0.064 Sum_probs=72.6
Q ss_pred CCCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC-HHHH
Q 018211 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFV 82 (359)
Q Consensus 13 ~~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~-~~~~ 82 (359)
..|+.+|++. .+-.+|.+.+...+..+... .++.++|++....|-. ...+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES--------------------LGFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH--------------------TCCCTTCEEEECSCTTSHHHH
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh--------------------hCCCccCEEEEeCcHHHHHHH
Confidence 3567777764 12578999888776665433 4778899998888765 3334
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
..+++.+..|+..+..+ ..+++.+...+++.++.++.........+...
T Consensus 220 ~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp HHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 44677888999888775 47888999999999999999887766665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-48 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 5e-37 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-30 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 5e-26 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-24 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-23 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-22 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 170 bits (431), Expect = 3e-48
Identities = 60/358 (16%), Positives = 104/358 (29%), Gaps = 61/358 (17%)
Query: 16 DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
D AI + K SY +L R ++ L +K G
Sbjct: 87 DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIK-----------------KGD 129
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
+ I E +L G + + + + + DS +V++ ++
Sbjct: 130 VVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAG 189
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFD----------------------QSQAEKMDGQ 167
+++ K +L P V S + +
Sbjct: 190 RSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM 249
Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAWEYTSADQFLHCLPLHHVHGL 226
EDP I+YTSG+TGKPKGV+HT ++Y D + + V G
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH 309
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
L PL GAT R + + PT L+
Sbjct: 310 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVV------DKHQVNILYTAPTAIRALMAE 363
Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH---RLLERYGMTEGC 341
+ +S LR++ + + + G +++ + TE
Sbjct: 364 GDKAIEGTDRSS------LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 138 bits (349), Expect = 5e-37
Identities = 51/366 (13%), Positives = 105/366 (28%), Gaps = 56/366 (15%)
Query: 16 DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
+ AI S +Y +L +++ +L + + G
Sbjct: 74 NKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGD 117
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
+ + E + +L G I + + + L ++D D +V++T++
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177
Query: 130 QNVASK---------------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR 168
+ + +K + ++ T
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVD 237
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
EDP ++YTSG+TG PKGV H+ + + + ++ D F + + G
Sbjct: 238 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 297
Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
+ PL G + R+ + +T F PT L +
Sbjct: 298 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDII------DEHKVTQFYVAPTALRLLKRAG 351
Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347
++ S LR + + V + + G + G H
Sbjct: 352 DSYIENHSLKS------LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405
Query: 348 WQSTSW 353
+
Sbjct: 406 VTPLAG 411
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 119 bits (300), Expect = 1e-30
Identities = 58/351 (16%), Positives = 125/351 (35%), Gaps = 44/351 (12%)
Query: 16 DSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71
+ + +Y ++ A R+ L + + G R+
Sbjct: 26 RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGV-----------------GDRV 68
Query: 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131
+ F + G + E+ ++++ ++ ++L + +++
Sbjct: 69 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128
Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIVYTSGTTGKPKGVV 189
+ + + ++++ E+ D R + YT+GTTG PKGVV
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVV 188
Query: 190 HTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
++H+++ + L + + D L +P+ HV+ A L V P+
Sbjct: 189 YSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 248
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
+ + + E +T GVPT++ L E+ L K LR
Sbjct: 249 PASLVELFDG----------EGVTFTAGVPTVWLALADYLESTGHRL--------KTLRR 290
Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTSWCSGQD 358
++ G SA P ++ ++E + G + + YG+TE + + S +
Sbjct: 291 LVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSE 340
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 106 bits (265), Expect = 5e-26
Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 51/341 (14%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
++VAI + + +Y +L A +++ + + +GI+
Sbjct: 38 NNVAIVCENEQLTYHELNVKANQLARIFIEKGIGK-----------------DTLVGIMM 80
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
+ S + G+L +G VP+ + YP+ + +++ DS M+L+ + ++ N+
Sbjct: 81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-- 138
Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
+ E T+ + + D A ++YTSGTTG PKG + HK I
Sbjct: 139 -------FNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 191
Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
+ T D+ + ++ +A L + +
Sbjct: 192 SNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK----------- 240
Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
+N E + + + ++ ++ SA
Sbjct: 241 ---DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERIL--------SIQTLITAGSAT 289
Query: 316 PLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTSWCSG 356
++ +W + YG TE T W +T G
Sbjct: 290 SPSLVNKW--KEKVTYINAYGPTE-TTICATTWVATKETIG 327
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 102 bits (255), Expect = 1e-24
Identities = 65/358 (18%), Positives = 126/358 (35%), Gaps = 53/358 (14%)
Query: 2 EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
E A K+ ++ ++A + + +Y + ++R++ + L T
Sbjct: 21 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 71
Query: 60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V
Sbjct: 72 --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123
Query: 120 LSTEDYREVLQNVASK--SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ---------- 167
++ + + NV K K ++ + +++ + G
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 183
Query: 168 -RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHV 223
R + ALI+ +SG+TG PKGV H++ + + + L +P HH
Sbjct: 184 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243
Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
G+F L L G V M +F + ++ + VPT+++
Sbjct: 244 FGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS----------ALLVPTLFSFF 292
Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGC 341
+ +L + + G+ + + + YG+TE
Sbjct: 293 AKSTLIDKYDL-------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 343
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 98.2 bits (243), Expect = 3e-23
Identities = 62/341 (18%), Positives = 123/341 (36%), Gaps = 38/341 (11%)
Query: 15 RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
++A+ A ++ +L + +++ L ++ L+ R+ +V
Sbjct: 18 HCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAVV 60
Query: 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
A S + V +L G + L +EL ++ +++ + + S
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS 120
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
SGA+ I + ++ + + + + PA I YTSGTTG PK + ++
Sbjct: 121 GSGAR---IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 195 IDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
+++V ++ + + L +PL+HV G F L+A L T + +F
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237
Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
Q ++ E +T+ PT L + L+ S LR +
Sbjct: 238 QLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFAG 281
Query: 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTSW 353
+ +P V++ + YG TE T
Sbjct: 282 ATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGT 322
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 95.4 bits (236), Expect = 3e-22
Identities = 52/347 (14%), Positives = 109/347 (31%), Gaps = 41/347 (11%)
Query: 16 DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
D +AI +SY +L + A R+++ ++ R+ +
Sbjct: 40 DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82
Query: 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
EF + + G + V S+ SE+ + ++ + + + Y ++
Sbjct: 83 PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 136 SGAKFSLIPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
V+ E F ++ K+ + D A + + G+TG K +
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202
Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-APLYAGATVEFMPKFSVR 249
TH ++ E + +L LP+ H + L + + LYAG V P S
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
+ T L+ + + ++ L+++
Sbjct: 263 DAFPLIEREKV------------------TITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304
Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTSWCSG 356
G + ++ + + G L + +GM EG
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVN 351
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 88.41 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6.5e-46 Score=365.76 Aligned_cols=314 Identities=18% Similarity=0.191 Sum_probs=246.2
Q ss_pred hHHH-HHHHcCCCCCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEE
Q 018211 2 EVFK-AAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74 (359)
Q Consensus 2 ~i~~-~l~~~a~~~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~ 74 (359)
|+.+ .|.++++.+||++|+++. .+++||+||.++++++|+.|++ +|+++||+|+++
T Consensus 72 N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-----------------~Gv~~Gd~V~i~ 134 (643)
T d1pg4a_ 72 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIY 134 (643)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEE
T ss_pred hHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEe
Confidence 4444 444667778999999953 2689999999999999999999 799999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhc--C--Ccee
Q 018211 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS--G--AKFS 141 (359)
Q Consensus 75 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~--~--~~~~ 141 (359)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... ........... . ...+
T Consensus 135 ~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 214 (643)
T d1pg4a_ 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 214 (643)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred cccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEE
Confidence 999999999999999999999999999999999999999999999987532 22222222111 1 1112
Q ss_pred ccCCCCCCCCcccc---------cccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCC
Q 018211 142 LIPPVPNVSSETTV---------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSA 211 (359)
Q Consensus 142 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~ 211 (359)
.+............ ............+++|+++|+|||||||.||||+++|++++.... .....+++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~ 294 (643)
T d1pg4a_ 215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 294 (643)
T ss_dssp EECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTT
T ss_pred EeccCCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCC
Confidence 22211111111110 001111122334678999999999999999999999999765544 44556789999
Q ss_pred ceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhh
Q 018211 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287 (359)
Q Consensus 212 d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 287 (359)
|++++..|++|++++...++.+|+.|+++++.+. +++..+++. ++++++|++.++|++++.+++..
T Consensus 295 d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~l~~l~~~~ 364 (643)
T d1pg4a_ 295 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEG 364 (643)
T ss_dssp CEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTG
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHHCCcEEEehHHHHHHHHhCc
Confidence 9999999999999987778889999999999763 478889998 88899999999999999998763
Q ss_pred hhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
.. .....++++||.++++|+++++++.+++.+.+| +++++.||+||+|++++...
T Consensus 365 ~~------~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~ 422 (643)
T d1pg4a_ 365 DK------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 422 (643)
T ss_dssp GG------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC
T ss_pred ch------hccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecC
Confidence 31 123457899999999999999999999999984 78999999999998766543
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-43 Score=350.59 Aligned_cols=313 Identities=16% Similarity=0.213 Sum_probs=245.3
Q ss_pred HHHHHHcCCCCCCceEEeeC------CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC
Q 018211 4 FKAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP 77 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n 77 (359)
.+.|.++++.+||++|+++. .+++||+||.++++++|+.|+.. +|+++||+|+++++|
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~----------------~Gv~~Gd~V~i~~~n 125 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGDTVAVYMPM 125 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT----------------SCCCTTCEEEECCCS
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence 45567788889999999863 26899999999999999999742 699999999999999
Q ss_pred CHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcCCce--eccCCC
Q 018211 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGAKF--SLIPPV 146 (359)
Q Consensus 78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~--~~~~~~ 146 (359)
++++++++|||+++|++++|+++.++.+++.++++++++++++++... ...+........... ......
T Consensus 126 ~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (640)
T d1ry2a_ 126 VPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 205 (640)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSS
T ss_pred CHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccc
Confidence 999999999999999999999999999999999999999999987532 223333222221111 111111
Q ss_pred CC-CCCccc---------ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH-HhhccCCCceEE
Q 018211 147 PN-VSSETT---------VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFL 215 (359)
Q Consensus 147 ~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l 215 (359)
.. ...... ..............++|+++|+|||||||.||||+++|.+++.+..... ..+++.++|+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l 285 (640)
T d1ry2a_ 206 NNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF 285 (640)
T ss_dssp CCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEE
T ss_pred ccccccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCccccee
Confidence 00 000000 0000111122334568999999999999999999999999877655444 456788999999
Q ss_pred EecCchhhHHHHHHHHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhh
Q 018211 216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291 (359)
Q Consensus 216 ~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 291 (359)
+.+|++|++++.+.++.+|..|+++++.+.+ ++..+++. ++++++|++.++|++++.+.+....
T Consensus 286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-- 353 (640)
T d1ry2a_ 286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS-- 353 (640)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT--
T ss_pred eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHhCccEEEcChHHHHHHHhcccc--
Confidence 9999999999877788999999999987653 78889998 8889999999999999998875321
Q ss_pred HHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 292 ~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
.....++++||.+++||+++++++.++|.+.+| .++++.||+||++..+....
T Consensus 354 ----~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~ 409 (640)
T d1ry2a_ 354 ----YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409 (640)
T ss_dssp ----SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred ----ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccccc
Confidence 123457899999999999999999999999885 57999999999998765544
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.6e-43 Score=340.39 Aligned_cols=316 Identities=17% Similarity=0.235 Sum_probs=255.5
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+|+.+.|.++|+.+||++|+++. .+++||+||.++++++|+.|.+ +|+++||+|+++++
T Consensus 11 ~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-----------------~Gv~~gd~V~i~~~ 73 (534)
T d1v25a_ 11 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF 73 (534)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-----------------CCcCCCCEEEEEeC
Confidence 57899999999999999999873 2579999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccc--
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-- 154 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (359)
|++++++++|||+++|++++|+++.++.+++.++++.+++++++++....................+...........
T Consensus 74 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (534)
T d1v25a_ 74 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY 153 (534)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccc
Confidence 999999999999999999999999999999999999999999999998888887776654432222211111111100
Q ss_pred ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH--hhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
..............++++++|+|||||||.||||.++|.+++........ .+.....|++++.+|++|..++...+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~ 233 (534)
T d1v25a_ 154 EEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 233 (534)
T ss_dssp HHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHH
T ss_pred cccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcccccccee
Confidence 00111112233456789999999999999999999999999876654333 3456789999999999999999765555
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
.+..|.++.+.+.+++..++.. +.++++|++.++|.++..+.... .....++++||.+++||
T Consensus 234 ~~~g~~~v~~~~~~~~~~~~~~----------~~~~~vt~~~~~p~~~~~~~~~~--------~~~~~~~~~lr~~~~gG 295 (534)
T d1v25a_ 234 TLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYL--------ESTGHRLKTLRRLVVGG 295 (534)
T ss_dssp HHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHH--------HHHTCCCSSCCEEEECS
T ss_pred eeecceeeeccccccccccchh----------hhhccccccccCchhhhhhhhhh--------ccccccccceeEEEEec
Confidence 4544555555567899999888 78899999999999999988762 34456789999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCccccccccccCc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTS 352 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~~~~ 352 (359)
+++++...+++++ +|.++++.||+||++.++...+....
T Consensus 296 ~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~ 334 (534)
T d1v25a_ 296 SAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSH 334 (534)
T ss_dssp SCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGG
T ss_pred CCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcc
Confidence 9999999998885 69999999999999998877654443
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=4.4e-41 Score=324.75 Aligned_cols=315 Identities=20% Similarity=0.241 Sum_probs=248.5
Q ss_pred hHHHHHHHcCCCC---CCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 2 EVFKAAYKKGSMA---RDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 2 ~i~~~l~~~a~~~---p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
++.+.|.+.++++ |+++|+++. ++++||+||.+++.++|+.|.+ +|+++||+|+++++
T Consensus 18 t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-----------------~Gi~~Gd~Vai~~~ 80 (541)
T d1lcia_ 18 TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCSE 80 (541)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECS
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeC
Confidence 3455666555444 888999874 4689999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCcee--ccCCCCCCCCccc
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS--LIPPVPNVSSETT 154 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 154 (359)
|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+.....+.... .+...........
T Consensus 81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (541)
T d1lcia_ 81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS 160 (541)
T ss_dssp SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEE
T ss_pred CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccch
Confidence 99999999999999999999999999999999999999999999999988888777766553322 2222111111111
Q ss_pred ccc-----------cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhh---ccCCCceEEEecCc
Q 018211 155 VFD-----------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPL 220 (359)
Q Consensus 155 ~~~-----------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl 220 (359)
... .....+.....++++++|+|||||||.||+|.++|.+++.......... ...+++++++.+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (541)
T d1lcia_ 161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240 (541)
T ss_dssp HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence 100 0111122334568899999999999999999999999988776655443 56789999999999
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHh
Q 018211 221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300 (359)
Q Consensus 221 ~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 300 (359)
+|..+... .+..+..|+..+.....+....+.. +.++++|.+.++|.++..+..... ....
T Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~~--------~~~~ 301 (541)
T d1lcia_ 241 HHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDKY 301 (541)
T ss_dssp TSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEECCHHHHHHHHHCSC--------GGGS
T ss_pred cccccccc-cccccccccccccccccccchhHHH----------HhhhhccccccCcccccccccccc--------cccc
Confidence 99999864 6677888888888888888888888 778999999999999999987643 2345
Q ss_pred hhccceEEEecCCCCCHHHHHHHHHHhCC-cccccccCCcCccccccccccCc
Q 018211 301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEGCTKGRHCWQSTS 352 (359)
Q Consensus 301 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~TE~g~~~~~~~~~~~ 352 (359)
++++++.+++||++++++..+++.+.++. .+++.||+||+++.++.......
T Consensus 302 ~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 354 (541)
T d1lcia_ 302 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDD 354 (541)
T ss_dssp CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC--
T ss_pred ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccC
Confidence 67899999999999999999999999864 68999999999998877655443
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6.3e-41 Score=323.13 Aligned_cols=310 Identities=18% Similarity=0.205 Sum_probs=252.8
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
|+.+.|.++|+++||++|++++++++||+||.++++++|+.|.+ +|+++||+|+++++|++++
T Consensus 26 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~V~i~~~n~~~~ 88 (536)
T d1mdba_ 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKEF 88 (536)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHHH
Confidence 68899999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHH-----HHHHHhhhcCCc--eeccCCCCCCCCccc
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE-----VLQNVASKSGAK--FSLIPPVPNVSSETT 154 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (359)
++++|||+++|++++|+++.++.+++.++++++++++++++..... ............ ..............+
T Consensus 89 ~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (536)
T d1mdba_ 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLED 168 (536)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGG
T ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhh
Confidence 9999999999999999999999999999999999999998753321 111111111111 111111111111111
Q ss_pred ccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHH-Hh
Q 018211 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-AP 233 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~-~~ 233 (359)
.. ......+...++|+++|+|||||||.||||.+||.++..++......+++.++|++++..|++|.+++...++ ..
T Consensus 169 ~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~ 246 (536)
T d1mdba_ 169 LH--TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246 (536)
T ss_dssp CC--CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred cc--cCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccc
Confidence 11 1112234556789999999999999999999999999999999999999999999999999999998743333 44
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|.+++..+.+++..++.. +.+++++.+..+|..+..+.... ......+++++.+++||+
T Consensus 247 ~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~gG~ 308 (536)
T d1mdba_ 247 LYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAA--------SSRRDDLSSLQVLQVGGA 308 (536)
T ss_dssp HHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHH--------HHCCCCCTTCCEEEEESS
T ss_pred ccccccccccCCCCHHHHHHH----------Hhhhccccccccchhhhhhhhhc--------cccccccCcceeEEEecc
Confidence 555788888888999999998 78899999999999999887762 333456889999999999
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++.+.+++.+.+|......||.+|.+..+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
T d1mdba_ 309 KFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLD 343 (536)
T ss_dssp CCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTT
T ss_pred ccccccccchhhccCceeeeccccccccccccccc
Confidence 99999999999999999999999999887655543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=5.1e-41 Score=322.52 Aligned_cols=298 Identities=20% Similarity=0.300 Sum_probs=241.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+||.+.|.++|+++||++|++++++++||+||.++++++|+.|.+ +|+++||+|+++++|+++
T Consensus 23 ~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~Vai~~~n~~~ 85 (514)
T d1amua_ 23 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIE-----------------KGIGKDTLVGIMMEKSID 85 (514)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred CcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHH
Confidence 478999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|++++|||+++|++++|+++.++.+++.++++.+++++++++....+.+....... ........ .......
T Consensus 86 ~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~ 156 (514)
T d1amua_ 86 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG---QVEIFEED------TIKIREG 156 (514)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS---EEEECCCS------TTTTSCC
T ss_pred HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc---cccccccc------ccccccc
Confidence 99999999999999999999999999999999999999999988766554332111 11110000 0000111
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++|+|||||||.||+|.++|.++..........++...+|+++...|++|..++. .++.++..|+++
T Consensus 157 ~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~~ 235 (514)
T d1amua_ 157 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL 235 (514)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred ccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccc-cccccccccccc
Confidence 1112234568899999999999999999999999999999999999999999999999999999986 578889999999
Q ss_pred EEcCCC---ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++...+ +....++. +..+.++.+..+|..+.... ..++.+++.++++|+++++
T Consensus 236 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~G~~~~~ 291 (514)
T d1amua_ 236 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLD--------------PERILSIQTLITAGSATSP 291 (514)
T ss_dssp EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSC--------------TTTCCSCSEEEEESSCCCH
T ss_pred cccccccccchhhhhhh----------hhhhhcccccceeeeccccc--------------ccccccccEEEEecccCCH
Confidence 988743 44555555 66788899999987655332 2468899999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCccccccccccC
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCWQST 351 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~~~ 351 (359)
++.+++.+ +..+++.||+||++++++......
T Consensus 292 ~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~ 323 (514)
T d1amua_ 292 SLVNKWKE--KVTYINAYGPTETTICATTWVATK 323 (514)
T ss_dssp HHHHHHTT--TSEEEEEECCGGGSSCSEEEECCS
T ss_pred HHhhhhcc--ceeEEEeeccccCceeeeeccccc
Confidence 99887765 789999999999999876555443
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=6.9e-40 Score=312.54 Aligned_cols=315 Identities=20% Similarity=0.233 Sum_probs=256.1
Q ss_pred hHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
||.+.|.++|+.+||++|+++. ++++||+||.+++.++|+.|.+ .|+++||+|+++++|++
T Consensus 3 ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~Gv~~gd~V~i~~~n~~ 65 (503)
T d3cw9a1 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-----------------DGLRPQQRVAVVAPNSA 65 (503)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeCCCH
Confidence 6889999999999999999974 5699999999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS 159 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
++++++|||+++|++++|+++.++.+++.+++++++++++|++..................+.+..... ........
T Consensus 66 ~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 142 (503)
T d3cw9a1 66 DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVR---DGEPYSYG 142 (503)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEE---TTEECCCS
T ss_pred HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhh---hhcccccC
Confidence 999999999999999999999999999999999999999998876433322222222233322211100 00001111
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhc--cCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
........+++++++++|||||||.||+|.++|.++..........+. ....++++..+|++|..+.....+.+...+
T Consensus 143 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (503)
T d3cw9a1 143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD 222 (503)
T ss_dssp CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred CccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccc
Confidence 112233456789999999999999999999999999998888777654 456689999999998888877788888999
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
+++++.+.+++..++.. +.+++++++..+|..+..+...... ......+++||.+++||+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Lr~i~~gG~~~~~ 286 (503)
T d3cw9a1 223 GTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGATMPD 286 (503)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHHH------TCTTCCCTTCCEEEECSSCCCH
T ss_pred cccccccccChHHhhhh----------hhhceeecccccccccccccccccc------ccccccccceEEEEeccccccc
Confidence 99999999999999998 7888999999999999988765221 1233457899999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCccccccccccCc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCWQSTS 352 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~~~~ 352 (359)
+....+...++..+.+.||+||++..+........
T Consensus 287 ~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~ 321 (503)
T d3cw9a1 287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTG 321 (503)
T ss_dssp HHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSS
T ss_pred cccccccccccccccccccccccceeeeecccccc
Confidence 99999999999999999999999987666554443
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=88.41 E-value=0.87 Score=40.63 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=76.1
Q ss_pred hhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCC
Q 018211 188 VVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNG 263 (359)
Q Consensus 188 v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~ 263 (359)
..+|++.+...+..+... .|+.++|++...++-+.. ++..+++++..|+..+..+. ++.+++...
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e--~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~--------- 114 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNS--------- 114 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS--THHHHHHHHHHTCEEEECCTTCCHHHHHHH---------
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCeEEEecCCCCCHHHHHHH---------
Confidence 358999998877766544 478999999998887643 34468899999999998864 566666666
Q ss_pred CCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCC
Q 018211 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP 316 (359)
Q Consensus 264 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~ 316 (359)
++..+++.++.....+..+.+.. ..++.++.+++.....+
T Consensus 115 -l~~~~~~~vi~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 154 (541)
T d1lcia_ 115 -MNISQPTVVFVSKKGLQKILNVQ------------KKLPIIQKIIIMDSKTD 154 (541)
T ss_dssp -HHHHCCSEEEECGGGHHHHHHHH------------HHCTTCCEEEETTCSSC
T ss_pred -HHhccceEEeeeccccccchhcc------------ccccccceeeeecCCcc
Confidence 66778999998888777665431 23566777777655443
|