Citrus Sinensis ID: 018216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
ccccccccHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEcEEEEEcccccEEEEEccccccccEEEEEccHHHHHHHHHHHHcccccccccccHHHHHcccccccccccEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEccccccccccccccccccccccccEEEccccccEEEcccccc
cccccccHHHHHcccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEcHcccccccEEEEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccEccccccccccccccEccccccccccccccccccccccccccEEEEcccccccccccccEEEEcccEEEEEEEEEcccccEEEcccccccccEEEEEEEEEEcHHHHcccHHHHHcccccccHEccccccccccccccEEEEccccccHHHHEccccccccEEEEEEEEccccccEEEEEEcccEccccEcEEccccccccccccEcEccccccccccccccc
mafsnaptelinchkrtiEVDEEQKQNQFLQWARlilpwltpgelanvSLTCRTLsqisksitlsrsldasrsvenfpipfhnaadktpyayfiytpsqiipppcpaqfpprqfwastnaaadaesnsslsrlgfdSVSLvcesdesesgcdceecfevglgdgvfgcpcfsgledvgivsecgpscgcgsecgnrltqrGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDglassprnsSALLVIREhlpsgkaclRMNIDATRIGNIARFInhscdggnlsttlvrssgsilprlcffaskdikEGEELAFSYgeirarprglpcycgstscfgilpsent
mafsnaptelinchKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYdglassprnssALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGstscfgilpsent
MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIpppcpaqfppRQFWASTNAAADAESNSSLSRLGFDSVSLVcesdesesgcdceecfeVGLGDGVFGCPCFSGLEDVGIVsecgpscgcgsecgNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
**********INCHKRTIEVD***KQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDA*RSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWA******************FDSVSLVC******SGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDG*********ALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGIL*****
*****************************LQWARLILPWLTPGELA****************************ENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSE**
********ELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTN***********SRLGFDSVSL************CEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
************C*KRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCF*I******
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
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MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q9SRV2338 Histone-lysine N-methyltr yes no 0.852 0.905 0.576 1e-97
Q80UJ9309 Histone-lysine N-methyltr yes no 0.749 0.870 0.296 1e-28
Q53H47 671 Histone-lysine N-methyltr yes no 0.465 0.248 0.346 2e-26
Q5I0M0315 Histone-lysine N-methyltr yes no 0.476 0.542 0.358 3e-26
Q0VD24306 Histone-lysine N-methyltr yes no 0.465 0.545 0.346 2e-25
Q96KQ71210 Histone-lysine N-methyltr no no 0.679 0.201 0.304 2e-22
O648271382 Histone-lysine N-methyltr no no 0.495 0.128 0.387 3e-22
Q9Z1481263 Histone-lysine N-methyltr no no 0.679 0.193 0.301 3e-22
Q28CQ7406 Histone-lysine N-methyltr no no 0.532 0.470 0.309 2e-20
Q6NRE8421 Histone-lysine N-methyltr N/A no 0.479 0.408 0.324 4e-20
>sp|Q9SRV2|SUVR3_ARATH Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana GN=SUVR3 PE=2 SV=3 Back     alignment and function desciption
 Score =  357 bits (915), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 234/340 (68%), Gaps = 34/340 (10%)

Query: 27  NQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86
           ++FL+ A LILPWL P ELA V+ TC+TLS ISKS+T+ RSLDA+RS+EN  IPFHN+ D
Sbjct: 26  DRFLRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSID 85

Query: 87  KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESN---SSLSRLGFDSVSLVCE 143
              YAYFIYTP QI   P  +  PPRQ+W +      +ES     S+S  G   VSLV  
Sbjct: 86  SQRYAYFIYTPFQI---PASSPPPPRQWWGAAANECGSESRPCFDSVSESGRFGVSLV-- 140

Query: 144 SDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGIS 203
               ESGC+CE C E     G   C  F+G+E+  I +ECG  CGCGS+C NR+TQ+G+S
Sbjct: 141 ---DESGCECERCEE-----GYCKCLAFAGMEE--IANECGSGCGCGSDCSNRVTQKGVS 190

Query: 204 VRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIR 263
           V LKIVR   KGW LYADQ IKQ            ARRRQ IYD L S+   +SALLV+R
Sbjct: 191 VSLKIVRDEKKGWCLYADQLIKQ------------ARRRQNIYDKLRSTQSFASALLVVR 238

Query: 264 EHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKE 323
           EHLPSG+ACLR+NIDATRIGN+ARFINHSCDGGNLST L+RSSG++LPRLCFFA+KDI  
Sbjct: 239 EHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLCFFAAKDIIA 298

Query: 324 GEELAFSYGEIRA----RPRGLPCYCGSTSCFGILPSENT 359
            EEL+FSYG++      R   L C CGS+ C G LP ENT
Sbjct: 299 EEELSFSYGDVSVAGENRDDKLNCSCGSSCCLGTLPCENT 338
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q80UJ9|SETMR_MOUSE Histone-lysine N-methyltransferase SETMAR OS=Mus musculus GN=Setmar PE=2 SV=2 Back     alignment and function description
>sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR OS=Homo sapiens GN=SETMAR PE=1 SV=1 Back     alignment and function description
>sp|Q5I0M0|SETMR_RAT Histone-lysine N-methyltransferase SETMAR OS=Rattus norvegicus GN=Setmar PE=2 SV=1 Back     alignment and function description
>sp|Q0VD24|SETMR_BOVIN Histone-lysine N-methyltransferase SETMAR OS=Bos taurus GN=SETMAR PE=2 SV=1 Back     alignment and function description
>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3 Back     alignment and function description
>sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z148|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2 Back     alignment and function description
>sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis GN=suv39h2 PE=2 SV=2 Back     alignment and function description
>sp|Q6NRE8|SUV91_XENLA Histone-lysine N-methyltransferase SUV39H1 OS=Xenopus laevis GN=suv39h1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
224125956340 SET domain protein [Populus trichocarpa] 0.894 0.944 0.617 1e-109
255569458327 set domain protein, putative [Ricinus co 0.880 0.966 0.602 1e-107
449437767342 PREDICTED: histone-lysine N-methyltransf 0.908 0.953 0.582 1e-104
42572235354 histone-lysine N-methyltransferase SUVR3 0.885 0.898 0.601 1e-103
225439235319 PREDICTED: histone-lysine N-methyltransf 0.877 0.987 0.597 2e-99
356574501343 PREDICTED: histone-lysine N-methyltransf 0.891 0.932 0.576 6e-98
42563469338 histone-lysine N-methyltransferase SUVR3 0.852 0.905 0.576 7e-96
297828844349 SET domain-containing protein [Arabidops 0.805 0.828 0.615 8e-95
147775079362 hypothetical protein VITISV_012529 [Viti 0.877 0.870 0.530 2e-94
226531440339 histone-lysine N-methyltransferase SUVR3 0.902 0.955 0.495 2e-82
>gi|224125956|ref|XP_002319719.1| SET domain protein [Populus trichocarpa] gi|222858095|gb|EEE95642.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/350 (61%), Positives = 255/350 (72%), Gaps = 29/350 (8%)

Query: 29  FLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKT 88
            +Q A LILPWLTP ELAN+S TC+ LSQISKSITL R+LDASR +EN  IPF N  ++ 
Sbjct: 1   LIQCADLILPWLTPLELANISSTCKALSQISKSITLQRTLDASRFLENHLIPFLNPNNQH 60

Query: 89  PYAYFIYTPSQIIPPPCPAQFPPRQFWAST---------NAAADAESNSSLSRL-GFDSV 138
           PYAYF+Y PSQ++P    +Q P RQ W S          ++ +  + N S   L G DS 
Sbjct: 61  PYAYFLYAPSQLLP----SQSPLRQPWGSQIDRDSLGRHHSGSACKLNESWEVLRGCDSE 116

Query: 139 -----SLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSEC 193
                 ++ ES +   GCDCE C E G G        F GLE++GI++ECGP CGCG EC
Sbjct: 117 LATPRRVMGESGKGVCGCDCEGCEEGGTGWE------FWGLEEMGIMTECGPGCGCGLEC 170

Query: 194 GNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGL 249
            NRLTQRG+ V+LKIVR   K WGL+A Q I QGQFICE    LLTT+EARRRQQIYD L
Sbjct: 171 SNRLTQRGVLVKLKIVRDGKKAWGLFAGQMICQGQFICEYAGELLTTEEARRRQQIYDEL 230

Query: 250 ASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI 309
           ASS + SSALLV+REHLPSGKACLR+NIDATR GN+ARFINHSCDGGNL+T LVR +GS+
Sbjct: 231 ASSGQFSSALLVVREHLPSGKACLRINIDATRTGNVARFINHSCDGGNLTTVLVRHTGSL 290

Query: 310 LPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT 359
           LPRLCFFAS++IKEGEEL FSYGEIR R +GL C+CGS+ CFG LPSE+T
Sbjct: 291 LPRLCFFASRNIKEGEELTFSYGEIRVRSKGLQCFCGSSCCFGTLPSEHT 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569458|ref|XP_002525696.1| set domain protein, putative [Ricinus communis] gi|223534996|gb|EEF36679.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449437767|ref|XP_004136662.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Cucumis sativus] gi|449494757|ref|XP_004159638.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572235|ref|NP_974212.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] gi|6006866|gb|AAF00642.1|AC009540_19 hypothetical protein [Arabidopsis thaliana] gi|225898613|dbj|BAH30437.1| hypothetical protein [Arabidopsis thaliana] gi|332640460|gb|AEE73981.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225439235|ref|XP_002277066.1| PREDICTED: histone-lysine N-methyltransferase SUVR3 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574501|ref|XP_003555385.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] Back     alignment and taxonomy information
>gi|42563469|ref|NP_187025.2| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] gi|166899086|sp|Q9SRV2.3|SUVR3_ARATH RecName: Full=Histone-lysine N-methyltransferase SUVR3; AltName: Full=Protein SET DOMAIN GROUP 20; AltName: Full=Suppressor of variegation 3-9-related protein 3; Short=Su(var)3-9-related protein 3 gi|31711698|gb|AAP68205.1| At3g03750 [Arabidopsis thaliana] gi|110742901|dbj|BAE99347.1| hypothetical protein [Arabidopsis thaliana] gi|332640461|gb|AEE73982.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828844|ref|XP_002882304.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328144|gb|EFH58563.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147775079|emb|CAN72627.1| hypothetical protein VITISV_012529 [Vitis vinifera] Back     alignment and taxonomy information
>gi|226531440|ref|NP_001151282.1| histone-lysine N-methyltransferase SUVR3 [Zea mays] gi|195645520|gb|ACG42228.1| histone-lysine N-methyltransferase SUVR3 [Zea mays] gi|414590238|tpg|DAA40809.1| TPA: putative SET-domain containing family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2079369354 SDG20 "SET domain protein 20" 0.894 0.906 0.557 5.6e-84
UNIPROTKB|F1P132181 F1P132 "Uncharacterized protei 0.426 0.845 0.401 7.3e-27
MGI|MGI:1921979309 Setmar "SET domain without mar 0.437 0.508 0.379 1.5e-26
UNIPROTKB|F1SFL5318 LOC100514009 "Uncharacterized 0.437 0.493 0.357 1e-25
UNIPROTKB|Q0VD24306 SETMAR "Histone-lysine N-methy 0.437 0.513 0.357 1e-25
UNIPROTKB|J9PBK3342 SETMAR "Uncharacterized protei 0.437 0.459 0.351 9.1e-25
UNIPROTKB|E2R9M4306 SETMAR "Uncharacterized protei 0.437 0.513 0.351 1.9e-24
ZFIN|ZDB-GENE-080204-61293 setmar "SET domain without mar 0.356 0.436 0.364 3e-23
UNIPROTKB|C9JHK2365 SETMAR "SET domain and mariner 0.437 0.430 0.357 2.6e-22
RGD|1565882315 Setmar "SET domain without mar 0.434 0.495 0.366 2.6e-22
TAIR|locus:2079369 SDG20 "SET domain protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 190/341 (55%), Positives = 223/341 (65%)

Query:    27 NQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86
             ++FL+ A LILPWL P ELA V+ TC+TLS ISKS+T+ RSLDA+RS+EN  IPFHN+ D
Sbjct:    26 DRFLRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSID 85

Query:    87 KTPYAYFIYTPSQIIXXXXXXXXXXRQFWASTNAAADAESNSSLSRLGFDSVSLVXXXXX 146
                YAYFIYTP QI           RQ+W    AAA+ E  S  SR  FDSVS       
Sbjct:    86 SQRYAYFIYTPFQI---PASSPPPPRQWWG---AAAN-ECGSE-SRPCFDSVS--ESGRF 135

Query:   147 XXXXXXXXXXXXVGLGDGVFGCPCFSGLEDVGIVXXXXXXXXXXXXXXNRLTQRGISVRL 206
                             +G   C  F+G+E+  I               NR+TQ+G+SV L
Sbjct:   136 GVSLVDESGCECERCEEGYCKCLAFAGMEE--IANECGSGCGCGSDCSNRVTQKGVSVSL 193

Query:   207 KIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLASSPRNSSALLVI 262
             KIVR   KGW LYADQ IKQGQFICE    LLTT EARRRQ IYD L S+   +SALLV+
Sbjct:   194 KIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLVV 253

Query:   263 REHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIK 322
             REHLPSG+ACLR+NIDATRIGN+ARFINHSCDGGNLST L+RSSG++LPRLCFFA+KDI 
Sbjct:   254 REHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLCFFAAKDII 313

Query:   323 EGEELAFSYGEIRA----RPRGLPCYCGSTSCFGILPSENT 359
               EEL+FSYG++      R   L C CGS+ C G LP ENT
Sbjct:   314 AEEELSFSYGDVSVAGENRDDKLNCSCGSSCCLGTLPCENT 354
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
UNIPROTKB|F1P132 F1P132 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1921979 Setmar "SET domain without mariner transposase fusion" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFL5 LOC100514009 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VD24 SETMAR "Histone-lysine N-methyltransferase SETMAR" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBK3 SETMAR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9M4 SETMAR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-61 setmar "SET domain without mariner transposase fusion" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9JHK2 SETMAR "SET domain and mariner transposase fusion" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1565882 Setmar "SET domain without mariner transposase fusion" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV2SUVR3_ARATH2, ., 1, ., 1, ., 4, 30.57640.85230.9053yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.946
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG935
SET domain protein (340 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-26
pfam00856113 pfam00856, SET, SET domain 2e-25
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 9e-10
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 9e-05
smart0057050 smart00570, AWS, associated with SET domains 0.004
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  102 bits (255), Expect = 1e-26
 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 204 VRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLASSPRNSSAL 259
            +L++ +S  KGWG+ A + I +G+FI E    ++T++EA  R + YD   +    +  L
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYD---TDGAKAFYL 57

Query: 260 LVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASK 319
             I            + IDA R GN+ARFINHSC+  N     V  +G    R+  FA +
Sbjct: 58  FDIDSD---------LCIDARRKGNLARFINHSCE-PNCELLFVEVNGDD--RIVIFALR 105

Query: 320 DIKEGEELAFSYG 332
           DIK GEEL   YG
Sbjct: 106 DIKPGEELTIDYG 118

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|197795 smart00570, AWS, associated with SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.96
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.95
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.86
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.79
KOG1085392 consensus Predicted methyltransferase (contains a 99.76
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.7
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.63
COG2940480 Proteins containing SET domain [General function p 99.6
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.4
KOG1081463 consensus Transcription factor NSD1 and related SE 99.02
KOG11411262 consensus Predicted histone methyl transferase [Ch 98.89
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.57
cd0139560 HMT_MBD Methyl-CpG binding domains (MBD) present i 98.03
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 97.88
smart0057051 AWS associated with SET domains. subdomain of PRES 97.06
smart0050826 PostSET Cysteine-rich motif following a subset of 96.96
smart0039177 MBD Methyl-CpG binding domain. Methyl-CpG binding 96.12
cd0012262 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and 95.71
cd0139773 HAT_MBD Methyl-CpG binding domains (MBD) present i 94.91
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 94.72
KOG2084 482 consensus Predicted histone tail methylase contain 91.28
cd0139677 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me 90.07
KOG1337 472 consensus N-methyltransferase [General function pr 82.14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-49  Score=397.07  Aligned_cols=179  Identities=21%  Similarity=0.306  Sum_probs=148.1

Q ss_pred             cccceeeeeeCCchhhhhhHHHHhccCCcchhhhHhhh-------hhhhhhhcccccccccccccCCcCCCCeeeEeCCC
Q 018216           14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLT-------CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD   86 (359)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~vN~vD   86 (359)
                      +++.+||.|++|||+.||.+++|.+||.++.+.++...       ....+...+.....++.||+.|+|.+||+++|++|
T Consensus       615 ~~~~fhv~yktpcg~~lr~~~el~ryL~et~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neid  694 (1262)
T KOG1141|consen  615 YIRDFHVEYKTPCGMPLRMRIELYRYLVETRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEID  694 (1262)
T ss_pred             hhhcceeeccCCCccchHHHHHHHHHHHHhcCcEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeeccc
Confidence            78899999999999999999999999999988776654       22334455556678899999999999999999999


Q ss_pred             CCCCCCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccCCCCCCCCCcCCCccCCCCCCCc
Q 018216           87 KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVF  166 (359)
Q Consensus        87 ~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~gC~C~~~~~~~~~~~~~  166 (359)
                      +.++|.|.|....|....            ...+  +++++                    ..+|+|..+|.+.     .
T Consensus       695 s~~lpq~ay~K~~ip~~~------------nl~n--~~~~f--------------------l~scdc~~gcid~-----~  735 (1262)
T KOG1141|consen  695 SHRLPQAAYKKHMIPTNN------------NLSN--RRKDF--------------------LQSCDCPTGCIDS-----M  735 (1262)
T ss_pred             CcCCccchhheeeccCCC------------cccc--cChhh--------------------hhcCCCCcchhhh-----h
Confidence            999999999997652111            1111  12222                    2789999999877     8


Q ss_pred             CCCCCCC-------------------------cccccceeecCCCCCCCC-CCCCccccCCCcccEEEEEeCCCCcccee
Q 018216          167 GCPCFSG-------------------------LEDVGIVSECGPSCGCGS-ECGNRLTQRGISVRLKIVRSVNKGWGLYA  220 (359)
Q Consensus       167 ~c~C~~~-------------------------~~~~~~i~EC~~~C~C~~-~C~Nrv~Q~g~~~~leV~~t~~kGwGlrA  220 (359)
                      +|+|.++                         ...+..+|||+..|+|.+ .|.||++|+|++++|++|++..||||+|+
T Consensus       736 kcachQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rc  815 (1262)
T KOG1141|consen  736 KCACHQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRC  815 (1262)
T ss_pred             hhhHHHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEe
Confidence            8999864                         012466899999999876 79999999999999999999999999999


Q ss_pred             ccccCCCcEEE
Q 018216          221 DQFIKQGQFIC  231 (359)
Q Consensus       221 ~~~I~~G~fI~  231 (359)
                      +++|.+|.|||
T Consensus       816 lddi~~g~fVc  826 (1262)
T KOG1141|consen  816 LDDITGGNFVC  826 (1262)
T ss_pred             eeecCCceEEE
Confidence            99999999999

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>smart00391 MBD Methyl-CpG binding domain Back     alignment and domain information
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 8e-24
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-19
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-19
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 2e-15
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 4e-15
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 4e-15
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 5e-15
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 5e-14
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 1e-13
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 3e-12
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-11
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 4e-11
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 3e-09
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 4e-08
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 5e-08
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 9e-08
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 1e-07
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 1e-07
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 1e-07
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 35/187 (18%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
           NR+ Q+G+    ++ ++  KGWGL   +FI +G+F+C    E+L   E +RR  +     
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHL----- 171
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSIL 310
            +  +S+ ++ IREH+ +G+  +   +D T IGNI RF+NHSC+  NL    VR   S++
Sbjct: 172 QTKSDSNYIIAIREHVYNGQV-METFVDPTYIGNIGRFLNHSCE-PNLLMIPVRID-SMV 228
Query: 311 PRLCFFASKDIKEGEELAFSY------------------GEIRARPRGLPCYCGSTSCFG 352
           P+L  FA+KDI   EEL++ Y                  G++R      PCYCG+ SC  
Sbjct: 229 PKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRK-----PCYCGAKSCTA 283
Query: 353 ILPSENT 359
            LP +++
Sbjct: 284 FLPFDSS 290
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 1e-66
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 3e-66
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 7e-61
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 3e-60
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-58
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 5e-54
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 3e-50
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 4e-49
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 5e-40
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 5e-37
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 9e-23
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 5e-20
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-17
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-15
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 7e-15
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 1e-11
3dal_A196 PR domain zinc finger protein 1; methyltransferase 2e-11
3db5_A151 PR domain zinc finger protein 4; methyltransferase 2e-10
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 1e-07
3ray_A237 PR domain-containing protein 11; structural genomi 5e-04
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  211 bits (539), Expect = 1e-66
 Identities = 73/325 (22%), Positives = 116/325 (35%), Gaps = 52/325 (16%)

Query: 52  CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD--KTPYAYFIYTPSQIIPPPCPAQF 109
             + + +S            R +E   +   N  D    P   F +     +        
Sbjct: 3   LDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVI--- 59

Query: 110 PPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCP 169
                                 + G +  SL      + S C+C +  +       +   
Sbjct: 60  ----------------PPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEP-THFAYDAQ 102

Query: 170 CFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQF 229
                +   ++ EC   C C  EC NR+ QRG ++ L+I ++  KGWG+ + +F   G F
Sbjct: 103 GRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTF 162

Query: 230 IC----ELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNI 285
           I     E++T+ EA +R + YD         + L      L          +DA   G++
Sbjct: 163 ITCYLGEVITSAEAAKRDKNYD-----DDGITYLF----DLDMFDDASEYTVDAQNYGDV 213

Query: 286 ARFINHSCDGGNLSTT--LVRSSGSILPRLCFFASKDIKEGEELAFSYG----------- 332
           +RF NHSC   N++    +       +  L FFA KDI+  EEL F Y            
Sbjct: 214 SRFFNHSCS-PNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQ 272

Query: 333 ---EIRARPRGLPCYCGSTSCFGIL 354
              + R       C CGS +C G L
Sbjct: 273 KSQQNRISKLRRQCKCGSANCRGWL 297
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.93
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.91
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.9
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.9
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.89
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.83
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.72
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.69
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.62
3ray_A237 PR domain-containing protein 11; structural genomi 99.5
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.37
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.78
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.72
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.69
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.85
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 96.44
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.43
2ky8_A72 Methyl-CPG-binding domain protein 2; DNA binding d 92.54
3vxv_A69 Methyl-CPG-binding domain protein 4; methyl CPG bi 91.84
1d9n_A75 Methyl-CPG-binding protein MBD1; PCM1, methylation 90.86
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 84.89
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 83.77
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 82.16
3c2i_A97 Methyl-CPG-binding protein 2; water mediated recog 80.56
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-55  Score=420.19  Aligned_cols=257  Identities=33%  Similarity=0.648  Sum_probs=187.5

Q ss_pred             cccccccCCcCCCCeeeEeCCCCCCCCCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccC
Q 018216           65 SRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCES  144 (359)
Q Consensus        65 ~~~~DiS~G~E~~pI~~vN~vD~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~  144 (359)
                      .+..|||+|+|++||+++|+  +..|+.|+|+++++++++...+  +.+                   ..|  ..|.|..
T Consensus        12 ~~~~Dis~G~E~~pi~~~n~--~~~p~~f~Y~~~~~~~~~~~~~--~~~-------------------~~~--~gC~C~~   66 (290)
T 3bo5_A           12 TEQLDVACGQENLPVGAWPP--GAAPAPFQYTPDHVVGPGADID--PTQ-------------------ITF--PGCICVK   66 (290)
T ss_dssp             CCCSCTTTTCSSSCCEEEST--TCCCCCCEECSSCEECTTCSSC--TTS-------------------CCC--CCCCCCS
T ss_pred             ccchhhhCCCCCCceeeECC--CCCCCCcEEeeceecCCCCcCC--ccc-------------------ccC--CCCCCCC
Confidence            35689999999999999998  4467899999998765443221  000                   001  1234432


Q ss_pred             -CCCCCCCCcCCCccCCCCCCCcCCCCCCC----cccccceeecCCCCCCCCCCCCccccCCCcccEEEEEeCCCCccce
Q 018216          145 -DESESGCDCEECFEVGLGDGVFGCPCFSG----LEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLY  219 (359)
Q Consensus       145 -~~~~~gC~C~~~~~~~~~~~~~~c~C~~~----~~~~~~i~EC~~~C~C~~~C~Nrv~Q~g~~~~leV~~t~~kGwGlr  219 (359)
                       .|....|.|......-     ....|+..    .....++|||++.|+|+..|+||++|+|++.+|+||+|+.+|||||
T Consensus        67 ~~C~~~~C~C~~~~~~y-----~~~~~l~~~~~~~~~~~~~~EC~~~C~C~~~C~Nr~~q~g~~~~l~V~~s~~~G~Gl~  141 (290)
T 3bo5_A           67 TPCLPGTCSCLRHGENY-----DDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLR  141 (290)
T ss_dssp             SCCCTTTCGGGTTSCSB-----CTTSCBCC-----CCCCCEECCCTTCCSCTTCTTCCGGGCCCSCEEEEECSSSSEEEE
T ss_pred             CCcCCCCCcchhhcCcc-----CccccccccccccccCCceEeCCCCCCCCCCCCCeEcccCCcccEEEEEcCCCcceEe
Confidence             2333456554322000     00112210    1123579999999999999999999999999999999999999999


Q ss_pred             eccccCCCcEEE----EecCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCcceeEEEeccccCCcccccccCCCC
Q 018216          220 ADQFIKQGQFIC----ELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDG  295 (359)
Q Consensus       220 A~~~I~~G~fI~----E~i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~P  295 (359)
                      |+++|++|+||+    |+|+.+|+++|...++.     ....|++.+.+++..+. ...++|||+.+||++|||||||+|
T Consensus       142 A~~~I~~G~~I~EY~Gevi~~~e~~~R~~~~~~-----~~~~Y~~~l~~~~~~~~-~~~~~IDa~~~GN~arfiNHSC~P  215 (290)
T 3bo5_A          142 TLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTK-----SDSNYIIAIREHVYNGQ-VMETFVDPTYIGNIGRFLNHSCEP  215 (290)
T ss_dssp             ESSCBCTTCEEEECCEEEECHHHHHHHHTTCCS-----SCCCCCEEEEECC------EEEEEEEEEEECGGGGCEECSSC
T ss_pred             ECCccCCCCEEEEEeeEEeCHHHHHHHHHhhcc-----cCCcceeeecccccCCc-cceeEEeeeecCCchheeeecCCC
Confidence            999999999999    67888899888766543     22356666666543332 135789999999999999999999


Q ss_pred             CceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCCC-------------CCCceeecCCCCCccccCCCCC
Q 018216          296 GNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRAR-------------PRGLPCYCGSTSCFGILPSENT  359 (359)
Q Consensus       296 NN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~~-------------~~~~~C~CGs~~Crg~l~~~~~  359 (359)
                       |+..+.|.+++ ..++|+|||+|||++||||||||+...+.             ...+.|+|||++|||+||.|.+
T Consensus       216 -N~~~~~~~~~~-~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~l~~~~~  290 (290)
T 3bo5_A          216 -NLLMIPVRIDS-MVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFLPFDSS  290 (290)
T ss_dssp             -SEEEEEEESSS-SSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSBCCCEEC
T ss_pred             -CEEEEEEEeCC-CceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCccCCCCCC
Confidence             77766666554 35799999999999999999999976432             2468999999999999998764
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Back     alignment and structure
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A* Back     alignment and structure
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 9e-39
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 4e-37
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 9e-22
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 5e-17
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  137 bits (345), Expect = 9e-39
 Identities = 65/291 (22%), Positives = 102/291 (35%), Gaps = 28/291 (9%)

Query: 76  NFPIPFHNAAD-KTPYAYFIYTPSQIIPPPCPAQFPPRQFWAS--TNAAADAESNSSLSR 132
             PI   N  D       F +    II    P      +   S  ++      +   L  
Sbjct: 1   QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDE 60

Query: 133 LGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSE 192
           +  DS                ++ F         G      L+    + EC   C C  +
Sbjct: 61  MAPDSDEEAD-------PYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKD 113

Query: 193 CGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRR--QQIY 246
           C NR+ +RG +V L+I R+ ++GWG+     IK+GQF+      ++T++EA RR  +   
Sbjct: 114 CPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTI 173

Query: 247 DGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGG-NLSTTLVRS 305
                    +       + L    A   + +D   +    RFINHSCD    +   +   
Sbjct: 174 ARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDH 233

Query: 306 SGSILPRLCFFASKDIKEGEELAFSYG-----------EIRARPRGLPCYC 345
           +   +  L  FA KDI +G EL F Y            +         C C
Sbjct: 234 ADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.89
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.84
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.12
d1ig4a_75 Methylation-dependent transcriptional repressor MB 91.62
d1qk9a_92 Methyl-CpG-binding protein 2, MECP2 {Human (Homo s 91.57
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 83.07
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=100.00  E-value=5.3e-50  Score=379.23  Aligned_cols=242  Identities=29%  Similarity=0.497  Sum_probs=155.9

Q ss_pred             CCCeeeEeCCCCCC-CCCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccC--CCCCCCCC
Q 018216           76 NFPIPFHNAADKTP-YAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCES--DESESGCD  152 (359)
Q Consensus        76 ~~pI~~vN~vD~~~-~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~--~~~~~gC~  152 (359)
                      +|||+++|+||+++ ||+|+|+++++++++...+   ...                    | ...|.|..  .|....|.
T Consensus         1 ~~pi~~~N~vd~~~~p~~f~Yi~~~~~~~~~~~~---~~~--------------------~-~~gC~C~~~~~c~~~~C~   56 (284)
T d1ml9a_           1 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA---DQS--------------------F-RVGCSCASDEECMYSTCQ   56 (284)
T ss_dssp             CCCEEEECSSSSCCCCTTCEECSSCEECTTCCCC---CGG--------------------G-CCCCCCSSTTGGGSTTSG
T ss_pred             CCCEEEEeCCCCCCCCCCCEECccEEeCCCCccC---Ccc--------------------C-CCCCCCcCCCCcCCCCCc
Confidence            58999999999975 5689999999876654331   111                    1 01223321  12234566


Q ss_pred             cCCCccCCC--------CCCCcCCCCCCC---------cccccceeecCCCCCCCCCCCCccccCCCcccEEEEEeCCCC
Q 018216          153 CEECFEVGL--------GDGVFGCPCFSG---------LEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKG  215 (359)
Q Consensus       153 C~~~~~~~~--------~~~~~~c~C~~~---------~~~~~~i~EC~~~C~C~~~C~Nrv~Q~g~~~~leV~~t~~kG  215 (359)
                      |...+....        ..+.....+...         +....+||||++.|+|+..|.||++|+|++.+|+||+|+.||
T Consensus        57 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~lev~kt~~kG  136 (284)
T d1ml9a_          57 CLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRG  136 (284)
T ss_dssp             GGTTSCCC-----------CCSSBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCSCEEEEECSSSC
T ss_pred             ChhhcCccccccccccccccccccccccccccccccccccCCCceeCCCCCCCcCCCCCCeeccCCCccCEEEEEcCCCc
Confidence            643331100        000000000000         112356899999999999999999999999999999999999


Q ss_pred             ccceeccccCCCcEEE----EecCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCC-----CcceeEEEeccccCCcc
Q 018216          216 WGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSG-----KACLRMNIDATRIGNIA  286 (359)
Q Consensus       216 wGlrA~~~I~~G~fI~----E~i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~IDa~~~GN~a  286 (359)
                      |||||+++|++|+||+    |+|+.+++++|...+....   ....|++.+.......     .....++|||+..||+|
T Consensus       137 ~Gv~a~~~I~kGt~I~eY~Gevi~~~ea~~~~~~~~~~~---~~~~y~~~l~~~~~~~~~~~~~~~~~~~iDa~~~GN~a  213 (284)
T d1ml9a_         137 WGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIAR---RKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPT  213 (284)
T ss_dssp             EEEECSSCBCTTCEEEECCCEEECHHHHHHHHHHSCGGG---CHHHHEEECCSSCCSSSSCHHHHSCCCEEECSSEECGG
T ss_pred             eEEeeCCCcCCCCEEEEecCcccCHHHHHHHHHHHHhhc---cCCccceecccccccccccccccCCceeEeeeeccchh
Confidence            9999999999999999    6788899888876554311   1112222222111000     01124789999999999


Q ss_pred             cccccCCCCCceEEEEEE--eCCCcccEEEEEEccCCCCCCeEEEeCCCCCC-----------CCCCceeec
Q 018216          287 RFINHSCDGGNLSTTLVR--SSGSILPRLCFFASKDIKEGEELAFSYGEIRA-----------RPRGLPCYC  345 (359)
Q Consensus       287 RFiNHSC~PNN~~~v~~~--~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~-----------~~~~~~C~C  345 (359)
                      |||||||+| |+....+.  ..+..+++|+|||+|||+|||||||||++..+           ..+.++|+|
T Consensus       214 RfiNHSC~P-N~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         214 RFINHSCDP-NMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGCEECSSC-SEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             heeeccccC-CcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            999999999 66554443  34557799999999999999999999997532           124567887
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure