Citrus Sinensis ID: 018226

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MGMVFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
cccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccEEEcccccccEEEEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEEEEEEccEEEcccEEEEEEEEcccccccccccEEEccccccccccccccHHHHHHHcccccccEEEEEEEcccccccccEEEEccccccccccccEEEEcccccEEEEEEcEEEEccEEEEEEcccEEEEEEcccccccccHHHHHHHHHHHcccccEEEEcccEEccccccEEEEEEccEEccccHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccEccEEEEEEEcccEEEEEEEEccccEEEEEEEEcccccEEEEEccccccHHHHccccEcHHHccccEEEEEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEcHHHHccccccEEEEccccccccHHcccHHHHHHHcccccccEEEEEcccccccccccEEEEccccHHHEEEEEEEEEcccEccEEEEEEEEEEccccEEccccEEEEEEccccccEEEcHHHHHHHHHHcccEcccccEEEEEEccccccEEEEEEccccccccHHHHHEEHEc
MGMVFKSITAGFFLCLLLFPvvfstpngglyriglkkrkfdLNNRVaarldskegesFRTSIRKYSlrgnlgesgdADIVALKNYMdaqyfgeigigtppqnfTVIFdtgssnlwvpsskcyfsiacyfhskyrsgrsstykkngksadihygtgaisgffsedhvkigdlvvkdqefieatrepSLTFLLAKFDGilglgfqeisvgkaVPVWYNMVnqglvnepvfsfwfnrnadeeeggeivfggmdpdhykgehtyvpvtqkgywqfdmgdvmidgqttgfcaggcaaiadsgtsllagpttIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
MGMVFKSITAGFFLCLLLFPVVFSTPNGGLYRiglkkrkfdlnnrvaarldskegesfrtsirkyslrgnlgesGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVsaklslrhykkwlii
MGMVFKSITAGfflclllfpvvfSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
***VFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAA*************IRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRS***********SADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLI*
******S*TAGFFLCLLLFPVVFSTPNGGLYRIGLKK******************************************VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
MGMVFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR**********GKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
*GMVFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGMVFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAKLSLRHYKKWLII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
O65390 506 Aspartic proteinase A1 OS yes no 0.944 0.669 0.680 1e-144
Q42456 509 Aspartic proteinase oryza yes no 0.863 0.609 0.752 1e-141
Q8VYL3 513 Aspartic proteinase A2 OS no no 0.961 0.672 0.660 1e-141
O04057 513 Aspartic proteinase OS=Cu N/A no 0.930 0.651 0.724 1e-136
P40782 473 Cyprosin (Fragment) OS=Cy N/A no 0.846 0.642 0.731 1e-135
Q9XEC4 508 Aspartic proteinase A3 OS no no 0.952 0.673 0.650 1e-132
P42210 508 Phytepsin OS=Hordeum vulg N/A no 0.871 0.616 0.714 1e-130
Q9XFX4 506 Procardosin-B OS=Cynara c N/A no 0.916 0.650 0.627 1e-121
P42211 496 Aspartic proteinase OS=Or no no 0.877 0.635 0.599 1e-118
Q9XFX3 504 Procardosin-A OS=Cynara c N/A no 0.961 0.684 0.598 1e-116
>sp|O65390|APA1_ARATH Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1 Back     alignment and function desciption
 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/347 (68%), Positives = 282/347 (81%), Gaps = 8/347 (2%)

Query: 1   MGMVFKSITAGFFLCLLLFPVVFSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRT 60
           M +  +++     +  LL    F+  N G +R+GLKK K D  NR+AAR++SK+ +  R 
Sbjct: 1   MKIYSRTVAVSLIVSFLLCFSAFAERNDGTFRVGLKKLKLDSKNRLAARVESKQEKPLRA 60

Query: 61  SIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK 120
                     LG+SGDAD+V LKNY+DAQY+GEI IGTPPQ FTV+FDTGSSNLWVPSSK
Sbjct: 61  Y--------RLGDSGDADVVVLKNYLDAQYYGEIAIGTPPQKFTVVFDTGSSNLWVPSSK 112

Query: 121 CYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIE 180
           CYFS+AC  H KY+S RSSTY+KNGK+A IHYGTGAI+GFFS D V +GDLVVKDQEFIE
Sbjct: 113 CYFSLACLLHPKYKSSRSSTYEKNGKAAAIHYGTGAIAGFFSNDAVTVGDLVVKDQEFIE 172

Query: 181 ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240
           AT+EP +TF++AKFDGILGLGFQEISVGKA PVWYNM+ QGL+ EPVFSFW NRNADEEE
Sbjct: 173 ATKEPGITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEEE 232

Query: 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
           GGE+VFGG+DP+H+KG+HTYVPVTQKGYWQFDMGDV+I G  TGFC  GC+AIADSGTSL
Sbjct: 233 GGELVFGGVDPNHFKGKHTYVPVTQKGYWQFDMGDVLIGGAPTGFCESGCSAIADSGTSL 292

Query: 301 LAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAK 347
           LAGPTTIIT +NHAIGA G+VSQ+CK VV QYG+ I+++LL++   K
Sbjct: 293 LAGPTTIITMINHAIGAAGVVSQQCKTVVDQYGQTILDLLLSETQPK 339
Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity). Possesses aspartic protease activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYL3|APA2_ARATH Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=1 SV=1 Back     alignment and function description
>sp|O04057|ASPR_CUCPE Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1 Back     alignment and function description
>sp|P40782|CYPR1_CYNCA Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9XEC4|APA3_ARATH Aspartic proteinase A3 OS=Arabidopsis thaliana GN=APA3 PE=1 SV=1 Back     alignment and function description
>sp|P42210|ASPR_HORVU Phytepsin OS=Hordeum vulgare PE=1 SV=1 Back     alignment and function description
>sp|Q9XFX4|CARDB_CYNCA Procardosin-B OS=Cynara cardunculus GN=cardB PE=1 SV=1 Back     alignment and function description
>sp|P42211|ASPRX_ORYSJ Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2 Back     alignment and function description
>sp|Q9XFX3|CARDA_CYNCA Procardosin-A OS=Cynara cardunculus GN=cardA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255578112 514 Aspartic proteinase precursor, putative 0.947 0.661 0.826 1e-170
21616051 514 aspartic proteinase [Theobroma cacao] 0.955 0.667 0.793 1e-163
224056377 494 predicted protein [Populus trichocarpa] 0.883 0.641 0.838 1e-159
359483345 514 PREDICTED: aspartic proteinase isoform 2 0.888 0.620 0.805 1e-157
449466825 513 PREDICTED: aspartic proteinase-like [Cuc 0.963 0.674 0.757 1e-155
224115794 512 predicted protein [Populus trichocarpa] 0.961 0.673 0.755 1e-155
225460913 514 PREDICTED: aspartic proteinase [Vitis vi 0.955 0.667 0.755 1e-154
261264941 513 aspartic proteinase 1 [Castanea mollissi 0.955 0.668 0.825 1e-154
449503193 516 PREDICTED: aspartic proteinase-like [Cuc 0.963 0.670 0.748 1e-154
261264943 513 aspartic proteinase 2 [Castanea mollissi 0.955 0.668 0.819 1e-152
>gi|255578112|ref|XP_002529926.1| Aspartic proteinase precursor, putative [Ricinus communis] gi|223530603|gb|EEF32480.1| Aspartic proteinase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/346 (82%), Positives = 317/346 (91%), Gaps = 6/346 (1%)

Query: 1   MGMVFKSITAGFFLCLLLFPVVFSTP---NGGLYRIGLKKRKFDLNNRVAARLDSKEGES 57
           MG +FK      F CL+L P+V +T    N GL RIGLKKRKFD NNRVAA+ +SKEGE+
Sbjct: 1   MGTIFK---PALFFCLILLPLVCATASSSNDGLVRIGLKKRKFDQNNRVAAQFESKEGEA 57

Query: 58  FRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVP 117
           FR SI+KY +RGNLG++ D DIV+LKNYMDAQYFGEIGIGTPPQ FTVIFDTGSSNLWVP
Sbjct: 58  FRASIKKYHIRGNLGDAEDIDIVSLKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVP 117

Query: 118 SSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQE 177
           SSKCYFS+ACYFHSKY+SG+SSTYKKNGKSADIHYGTGAISGFFS+D+VK+G+LV+K+QE
Sbjct: 118 SSKCYFSVACYFHSKYKSGQSSTYKKNGKSADIHYGTGAISGFFSQDNVKVGELVIKNQE 177

Query: 178 FIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNAD 237
           FIEATREPS+TFL+AKFDGILGLGFQEISVG AVPVWYNMVNQGLV EPVFSFWFNRNAD
Sbjct: 178 FIEATREPSITFLVAKFDGILGLGFQEISVGNAVPVWYNMVNQGLVKEPVFSFWFNRNAD 237

Query: 238 EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSG 297
           E+EGGEIVFGGMDP+HYKGEHTYVPVTQKGYWQFDMGDV+IDG+TTG C+ GCAAIADSG
Sbjct: 238 EDEGGEIVFGGMDPNHYKGEHTYVPVTQKGYWQFDMGDVLIDGKTTGICSSGCAAIADSG 297

Query: 298 TSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAK 343
           TSLLAGPTTIIT+VNHAIGATG+VSQECKAVV+QYGE II MLLAK
Sbjct: 298 TSLLAGPTTIITEVNHAIGATGVVSQECKAVVAQYGETIIAMLLAK 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21616051|emb|CAC86003.1| aspartic proteinase [Theobroma cacao] Back     alignment and taxonomy information
>gi|224056377|ref|XP_002298827.1| predicted protein [Populus trichocarpa] gi|222846085|gb|EEE83632.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483345|ref|XP_003632941.1| PREDICTED: aspartic proteinase isoform 2 [Vitis vinifera] gi|359483347|ref|XP_002262915.2| PREDICTED: aspartic proteinase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466825|ref|XP_004151126.1| PREDICTED: aspartic proteinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224115794|ref|XP_002317126.1| predicted protein [Populus trichocarpa] gi|222860191|gb|EEE97738.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460913|ref|XP_002279049.1| PREDICTED: aspartic proteinase [Vitis vinifera] gi|297737462|emb|CBI26663.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|261264941|gb|ACX55829.1| aspartic proteinase 1 [Castanea mollissima] Back     alignment and taxonomy information
>gi|449503193|ref|XP_004161880.1| PREDICTED: aspartic proteinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|261264943|gb|ACX55830.1| aspartic proteinase 2 [Castanea mollissima] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
UNIPROTKB|B9RXH6 511 RCOM_0903730 "Aspartic protein 0.958 0.673 0.697 2.9e-135
TAIR|locus:2008940 506 APA1 "aspartic proteinase A1" 0.871 0.618 0.725 8.1e-131
TAIR|locus:2018037 513 AT1G62290 [Arabidopsis thalian 0.961 0.672 0.649 1.6e-127
TAIR|locus:2137189 508 AT4G04460 [Arabidopsis thalian 0.880 0.622 0.683 4.1e-120
FB|FBgn0029093392 cathD "cathD" [Drosophila mela 0.682 0.625 0.558 1.1e-71
DICTYBASE|DDB_G0279411383 ctsD "cathepsin D" [Dictyostel 0.721 0.676 0.532 3e-69
UNIPROTKB|Q05744398 CTSD "Cathepsin D" [Gallus gal 0.810 0.731 0.469 3.8e-69
UNIPROTKB|O93428396 ctsd "Cathepsin D" [Chionodrac 0.810 0.734 0.480 1.7e-68
RGD|621511407 Ctsd "cathepsin D" [Rattus nor 0.818 0.722 0.470 2.7e-68
WB|WBGene00000217444 asp-4 [Caenorhabditis elegans 0.699 0.565 0.537 4.4e-68
UNIPROTKB|B9RXH6 RCOM_0903730 "Aspartic proteinase, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 242/347 (69%), Positives = 287/347 (82%)

Query:     1 MGMVFKSITAGXXXXXXXXXXXXSTPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRT 60
             MG  FK +               S PN GL R+GLKK K D N+R+AARL+SK  E+ R 
Sbjct:     1 MGTNFKPLVLFLFLSSLLSSLVSSAPNDGLVRLGLKKMKLDENSRLAARLESKNAEALRA 60

Query:    61 SIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK 120
             S+RKY LRG   +S D DIVALKNY+DAQY+GEIGIGTPPQ FTV+FDTGSSNLWVPSSK
Sbjct:    61 SVRKYGLRG---DSKDTDIVALKNYLDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSSK 117

Query:   121 CYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIE 180
             C FS+AC+FHS+Y+SG+SSTYKKNGKSA+IHYG+GAISGFFS D+V +G+LVVKDQEFIE
Sbjct:   118 CIFSVACFFHSRYKSGQSSTYKKNGKSAEIHYGSGAISGFFSSDNVVVGNLVVKDQEFIE 177

Query:   181 ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240
             AT+EP +TF+ AKFDGILGLGFQEISVG AVPVWYNM+ QGL+ EPVFSFW NRN   EE
Sbjct:   178 ATKEPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMIKQGLIKEPVFSFWLNRNTQGEE 237

Query:   241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
             GGEIVFGG+D +HYKG+HTYVPVTQKGYWQF+MGDV+I  + T +CAGGC+AIADSGTSL
Sbjct:   238 GGEIVFGGVDLNHYKGKHTYVPVTQKGYWQFEMGDVLIGHKPTEYCAGGCSAIADSGTSL 297

Query:   301 LAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKVSAK 347
             LAGPTT++T +N AIGATG+ SQECK V++QYGE I+++L+A+   K
Sbjct:   298 LAGPTTVVTLINEAIGATGVASQECKTVIAQYGETIMDLLIAEAQPK 344
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2008940 APA1 "aspartic proteinase A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018037 AT1G62290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137189 AT4G04460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0029093 cathD "cathD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279411 ctsD "cathepsin D" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q05744 CTSD "Cathepsin D" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O93428 ctsd "Cathepsin D" [Chionodraco hamatus (taxid:36188)] Back     alignment and assigned GO terms
RGD|621511 Ctsd "cathepsin D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00000217 asp-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04057ASPR_CUCPE3, ., 4, ., 2, 3, ., -0.72480.93030.6510N/Ano
Q42456ASPR1_ORYSJ3, ., 4, ., 2, 3, ., -0.75230.86350.6090yesno
O65390APA1_ARATH3, ., 4, ., 2, 3, ., -0.68010.94420.6699yesno
O76856CATD_DICDI3, ., 4, ., 2, 3, ., 50.53230.72140.6762yesno
Q05744CATD_CHICK3, ., 4, ., 2, 3, ., 50.43880.88850.8015yesno
P42210ASPR_HORVU3, ., 4, ., 2, 3, ., 4, 00.71470.87180.6161N/Ano
P40782CYPR1_CYNCA3, ., 4, ., 2, 3, ., -0.73130.84670.6427N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0032001501
hypothetical protein (495 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.0
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 1e-117
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-107
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 1e-101
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 1e-101
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-94
cd05487326 cd05487, renin_like, Renin stimulates production o 2e-90
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 3e-86
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 4e-86
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-81
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-61
PTZ00013450 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona 5e-45
PTZ00147453 PTZ00147, PTZ00147, plasmepsin-1; Provisional 2e-43
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 8e-40
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 7e-35
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-28
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-26
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 3e-17
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-10
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 5e-07
pfam0348935 pfam03489, SapB_2, Saposin-like type B, region 2 7e-06
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 3e-05
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 0.001
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information 
 Score =  525 bits (1355), Expect = 0.0
 Identities = 202/243 (83%), Positives = 222/243 (91%)

Query: 80  VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
           VALKNY+DAQYFGEIGIGTPPQ FTVIFDTGSSNLWVPSSKCYFSIACYFHSKY+S +SS
Sbjct: 1   VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSS 60

Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILG 199
           TYKKNG SA I YGTG+ISGFFS+D V +GDLVVK+Q FIEAT+EP LTFLLAKFDGILG
Sbjct: 61  TYKKNGTSASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILG 120

Query: 200 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHT 259
           LGFQEISVGKAVPVWYNMV QGLV EPVFSFW NRN DEEEGGE+VFGG+DP H+KGEHT
Sbjct: 121 LGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHT 180

Query: 260 YVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319
           YVPVT+KGYWQF+MGDV+I G++TGFCAGGCAAIADSGTSLLAGPTTI+TQ+N A+    
Sbjct: 181 YVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQINSAVDCNS 240

Query: 320 IVS 322
           + S
Sbjct: 241 LSS 243

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|112314 pfam03489, SapB_2, Saposin-like type B, region 2 Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PTZ00165482 aspartyl protease; Provisional 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.91
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.19
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 98.0
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.41
PF1365090 Asp_protease_2: Aspartyl protease 96.92
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 96.2
COG3577215 Predicted aspartyl protease [General function pred 96.06
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.38
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 94.93
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 93.69
PF0796629 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 93.17
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 88.85
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 81.91
PF1365090 Asp_protease_2: Aspartyl protease 81.74
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.1e-55  Score=426.24  Aligned_cols=288  Identities=35%  Similarity=0.617  Sum_probs=240.1

Q ss_pred             ceEEEceeeccchhhhhhhhcccccccchhhhc--cccccccCCCCCCCCceeEeeeecCCceEEEEEEecCCCceEEEE
Q 018226           29 GLYRIGLKKRKFDLNNRVAARLDSKEGESFRTS--IRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVI  106 (359)
Q Consensus        29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~  106 (359)
                      .++|+||+|.++.|+.+.+.... ..   +.+.  .|.|...+. ........+||.|+.|.+|+++|+||||||+|.|+
T Consensus        63 ~~~~i~l~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv  137 (482)
T PTZ00165         63 PAHKVELHRFALLKKKRKKNSEK-GY---ISRVLTKHKYLETKD-PNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVV  137 (482)
T ss_pred             heEEeeeEEcchHHHhhhhHHHH-Hh---hhhhhhccccccccc-cccccccceecccccCCeEEEEEEeCCCCceEEEE
Confidence            58999999988877765554110 00   0000  111111110 00013467999999999999999999999999999


Q ss_pred             eeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCcee--CCc---eEEEEcCCCceeeeEEEEEEEeceeEecCcEEEEE
Q 018226          107 FDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEA  181 (359)
Q Consensus       107 ~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~--~~~---~~~~~y~~gs~~G~~~~D~v~~g~~~~~~~~fg~~  181 (359)
                      +||||+++||++..|. +.+|..++.|++++|+||++  .+.   .+.+.|++|++.|.++.|+|++|+..+++|.||++
T Consensus       138 ~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a  216 (482)
T PTZ00165        138 FDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLA  216 (482)
T ss_pred             EeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEE
Confidence            9999999999999997 66899999999999999998  555   67899999999999999999999999999999999


Q ss_pred             EeecCccccccccccccCCCccccc---cCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEECcCCCCCe--ee
Q 018226          182 TREPSLTFLLAKFDGILGLGFQEIS---VGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY--KG  256 (359)
Q Consensus       182 ~~~~~~~~~~~~~~GilGLg~~~~s---~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~Gg~d~~~~--~g  256 (359)
                      ....+..|....+|||||||++..+   ....+|++++|++||+|++++||+||.+..  ..+|+|+|||+|++++  .|
T Consensus       217 ~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGGiD~~~~~~~g  294 (482)
T PTZ00165        217 IEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGSADPKYTLEGH  294 (482)
T ss_pred             EeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCCcCHHHcCCCC
Confidence            8876655666788999999998863   345789999999999999999999998653  2379999999999877  57


Q ss_pred             ceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCCceEEecCCcc
Q 018226          257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAV  328 (359)
Q Consensus       257 ~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~~~C~~~  328 (359)
                      ++.|+|+.+.++|+|++++|+||++.+..+..++.||+||||+++++|++++++|.+++++.    .+|+++
T Consensus       295 ~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----~~C~~~  362 (482)
T PTZ00165        295 KIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----EDCSNK  362 (482)
T ss_pred             ceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----cccccc
Confidence            89999999999999999999999988876667899999999999999999999999999975    599963

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1qdm_A 478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 1e-130
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 1e-93
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 2e-64
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 4e-64
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 1e-63
3d91_A341 Human Renin In Complex With Remikiren Length = 341 1e-63
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 1e-63
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 2e-63
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 2e-63
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 1e-62
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 6e-61
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 8e-61
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 9e-61
1smr_A335 The 3-D Structure Of Mouse Submaxillary Renin Compl 7e-59
1htr_B329 Crystal And Molecular Structures Of Human Progastri 3e-58
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 5e-57
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 5e-57
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 2e-56
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 2e-56
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 2e-56
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 2e-56
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 3e-56
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 3e-56
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 3e-56
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 4e-55
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 9e-55
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 9e-55
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 5e-50
3oad_C166 Design And Optimization Of New Piperidines As Renin 1e-45
3qrv_A336 Crystal Structure Of Plasmepsin I (Pmi) From Plasmo 1e-38
2anl_A327 X-Ray Crystal Structure Of The Aspartic Protease Pl 1e-36
1miq_A375 Crystal Structure Of Proplasmepsin From The Human M 3e-35
1ls5_A328 Crystal Structure Of Plasmepsin Iv From P. Falcipar 2e-34
1qs8_B329 Crystal Structure Of The P. Vivax Aspartic Proteina 3e-34
1lya_B241 Crystal Structures Of Native And Inhibited Forms Of 3e-34
2bju_A453 Plasmepsin Ii Complexed With A Highly Active Achira 1e-33
1pfz_A380 Proplasmepsin Ii From Plasmodium Falciparum Length 3e-33
1m43_A331 Crystal Structure Of Pmii In Complex With Pepstatin 5e-33
1lf3_A331 Crystal Structure Of Plasmepsin Ii From P Falciparu 6e-33
3f9q_A329 Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla 1e-32
1sme_A329 Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P 1e-32
1lyw_A97 Cathepsin D At Ph 7.5 Length = 97 6e-31
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 2e-28
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 2e-28
3qvc_A451 Crystal Structure Of Histo-Aspartic Protease (Hap) 3e-24
3fns_A332 Crystal Structure Of Histo-Aspartic Protease (Hap) 6e-24
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 4e-23
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 2e-19
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 2e-19
3liz_A334 Crystal Structure Of Bla G 2 Complexed With Fab 4c3 3e-19
1yg9_A330 The Structure Of Mutant (N93q) Of Bla G 2 Length = 3e-19
2qzx_A342 Secreted Aspartic Proteinase (Sap) 5 From Candida A 2e-18
1wkr_A340 Crystal Structure Of Aspartic Proteinase From Irpex 4e-18
1j71_A334 Structure Of The Extracellular Aspartic Proteinase 1e-16
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 2e-16
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 5e-15
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 1e-14
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 1e-14
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 5e-14
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 8e-14
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 8e-14
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 1e-13
3exo_A 413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 1e-13
3tpj_A 433 Apo Structure Of Bace1 Length = 433 1e-13
2hm1_A 406 Crystal Structure Of Human Beta-Secretase (Bace) In 4e-13
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-13
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 4e-13
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 4e-13
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 4e-13
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-13
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 4e-13
3l58_A 414 Structure Of Bace Bound To Sch589432 Length = 414 4e-13
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-13
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 4e-13
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 4e-13
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 4e-13
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-13
3udh_A 404 Crystal Structure Of Bace With Compound 1 Length = 5e-13
2zhr_A 411 Crystal Structure Of Bace1 In Complex With Om99-2 A 5e-13
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 5e-13
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 5e-13
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 5e-13
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 5e-13
3vv6_A 416 Crystal Structure Of Beta Secetase In Complex With 5e-13
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 5e-13
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 5e-13
3r1g_B 402 Structure Basis Of Allosteric Inhibition Of Bace1 B 5e-13
3ckp_A 412 Crystal Structure Of Bace-1 In Complex With Inhibit 5e-13
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 5e-13
3lpi_A 455 Structure Of Bace Bound To Sch745132 Length = 455 5e-13
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 5e-13
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 5e-13
2qu2_A 415 Bace1 With Compound 1 Length = 415 5e-13
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 5e-13
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-13
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 5e-13
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 6e-13
2wjo_A 412 Human Bace (Beta Secretase) In Complex With Cyclohe 6e-13
3tpr_A 433 Crystal Structure Of Bace1 Complexed With An Inhibi 6e-13
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 7e-13
3bra_A 409 Bace-1 Complexed With Compound 1 Length = 409 7e-13
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 9e-13
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 9e-13
3oad_B176 Design And Optimization Of New Piperidines As Renin 4e-12
1gvt_A329 Endothiapepsin Complex With Cp-80,794 Length = 329 7e-12
1gkt_A329 Neutron Laue Diffraction Structure Of Endothiapepsi 7e-12
1er8_E330 The Active Site Of Aspartic Proteinases Length = 33 2e-11
1epr_E330 Endothia Aspartic Proteinase (Endothiapepsin) Compl 2e-11
1izd_A323 Crystal Structure Of Aspergillus Oryzae Aspartic Pr 3e-11
1ppl_E323 Crystallographic Analysis Of Transition-State Mimic 4e-11
1ibq_A325 Aspergillopepsin From Aspergillus Phoenicis Length 2e-10
3c9x_A329 Crystal Structure Of Trichoderma Reesei Aspartic Pr 2e-09
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 4e-09
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  462 bits (1189), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/316 (71%), Positives = 263/316 (83%), Gaps = 6/316 (1%)
Query: 32  RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
           RI LKKR  D N+RVA  L   E +   +          L    + DIVALKNYM+AQYF
Sbjct: 2   RIALKKRPIDRNSRVATGLSGGEEQPLLSGANP------LRSEEEGDIVALKNYMNAQYF 55
Query: 92  GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIH 151
           GEIG+GTPPQ FTVIFDTGSSNLWVPS+KCYFSIACY HS+Y++G SSTYKKNGK A I 
Sbjct: 56  GEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQ 115
Query: 152 YGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAV 211
           YGTG+I+G+FSED V +GDLVVKDQEFIEAT+EP +TFL+AKFDGILGLGF+EISVGKAV
Sbjct: 116 YGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAV 175
Query: 212 PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQF 271
           PVWY M+ QGLV++PVFSFW NR+ DE EGGEI+FGGMDP HY GEHTYVPVTQKGYWQF
Sbjct: 176 PVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQF 235
Query: 272 DMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQ 331
           DMGDV++ G++TGFCAGGCAAIADSGTSLLAGPT IIT++N  IGA G+VSQECK +VSQ
Sbjct: 236 DMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQ 295
Query: 332 YGEEIINMLLAKVSAK 347
           YG++I+++LLA+   K
Sbjct: 296 YGQQILDLLLAETQPK 311
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336 Back     alignment and structure
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327 Back     alignment and structure
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375 Back     alignment and structure
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328 Back     alignment and structure
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241 Back     alignment and structure
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453 Back     alignment and structure
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380 Back     alignment and structure
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331 Back     alignment and structure
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331 Back     alignment and structure
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329 Back     alignment and structure
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329 Back     alignment and structure
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451 Back     alignment and structure
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334 Back     alignment and structure
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330 Back     alignment and structure
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 Back     alignment and structure
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340 Back     alignment and structure
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176 Back     alignment and structure
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794 Length = 329 Back     alignment and structure
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin Complexed With Transition State Analogue Inhibitor H261 Length = 329 Back     alignment and structure
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases Length = 330 Back     alignment and structure
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed With Pd-135, 040 Length = 330 Back     alignment and structure
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic Proteinase Length = 323 Back     alignment and structure
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound To Penicillopepsin: Phosphorus-Containing Peptide Analogues Length = 323 Back     alignment and structure
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis Length = 325 Back     alignment and structure
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic Proteinase Length = 329 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 1e-155
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-11
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-148
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-143
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-141
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-140
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-140
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-139
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-136
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-136
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-136
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-135
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-133
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-133
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-132
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 1e-126
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-125
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-125
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-119
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-117
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-116
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-114
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-114
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-109
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-109
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-108
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-106
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-102
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-102
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 5e-98
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-80
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-48
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 3e-27
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-12
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 1e-10
3bqp_A80 Proactivator polypeptide; saposin, sphingolipid ac 9e-10
3rfi_A108 Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber 1e-08
2gtg_A83 Proactivator polypeptide; saposin, sphingolipid ac 2e-08
2qyp_A91 Proactivator polypeptide; saposin, activator prote 3e-08
1nkl_A78 NK-lysin; saposin fold, antibacterial peptide, tum 3e-04
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
 Score =  444 bits (1144), Expect = e-155
 Identities = 227/325 (69%), Positives = 263/325 (80%), Gaps = 6/325 (1%)

Query: 32  RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
           RI LKKR  D N+RVA  L   E +         S    L    + DIVALKNYM+AQYF
Sbjct: 2   RIALKKRPIDRNSRVATGLSGGEEQ------PLLSGANPLRSEEEGDIVALKNYMNAQYF 55

Query: 92  GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIH 151
           GEIG+GTPPQ FTVIFDTGSSNLWVPS+KCYFSIACY HS+Y++G SSTYKKNGK A I 
Sbjct: 56  GEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQ 115

Query: 152 YGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAV 211
           YGTG+I+G+FSED V +GDLVVKDQEFIEAT+EP +TFL+AKFDGILGLGF+EISVGKAV
Sbjct: 116 YGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAV 175

Query: 212 PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQF 271
           PVWY M+ QGLV++PVFSFW NR+ DE EGGEI+FGGMDP HY GEHTYVPVTQKGYWQF
Sbjct: 176 PVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQF 235

Query: 272 DMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQ 331
           DMGDV++ G++TGFCAGGCAAIADSGTSLLAGPT IIT++N  IGA G+VSQECK +VSQ
Sbjct: 236 DMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQ 295

Query: 332 YGEEIINMLLAKVSAKLSLRHYKKW 356
           YG++I+++LLA+   K         
Sbjct: 296 YGQQILDLLLAETQPKKICSQVGLC 320
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80 Back     alignment and structure
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum} Length = 108 Back     alignment and structure
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83 Back     alignment and structure
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91 Back     alignment and structure
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Length = 78 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.97
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.92
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.97
3vcm_P43 Prorenin; aspartic proteases, hydrolase; HET: NAG; 91.36
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.68
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 84.16
1tzs_P35 Activation peptide from cathepsin E; hydrolase, as 81.37
1htr_P43 Progastricsin (Pro segment); aspartyl protease; 1. 81.34
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 80.69
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=1.3e-60  Score=457.14  Aligned_cols=315  Identities=37%  Similarity=0.654  Sum_probs=271.5

Q ss_pred             eEEEceeeccchhhhhhhhcccccccchhhhccccccccCCCCCC--CCceeEeeeecCCceEEEEEEecCCCceEEEEe
Q 018226           30 LYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGES--GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIF  107 (359)
Q Consensus        30 ~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~~  107 (359)
                      ++||||+|.++.|+.+.+.+..+++   ++  .|+++++.+....  .....+||.|+.|.+|+++|+||||||+|.|++
T Consensus         1 ~~~ipl~~~~s~r~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~   75 (370)
T 3psg_A            1 LVKVPLVRKKSLRQNLIKDGKLKDF---LK--THKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIF   75 (370)
T ss_dssp             CEEEEEEECCCHHHHHHHTTCHHHH---HH--HCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEE
T ss_pred             CEEEEeEEcCcHHHHHHhcCcHHHH---Hh--hhhcchhhhhccccccccceecceeccCCEEEEEEEEcCCCCEEEEEE
Confidence            4699999999999999998876654   32  2344433222111  135678999999999999999999999999999


Q ss_pred             eCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEEEEEEEeceeEecCcEEEEEEeecCc
Q 018226          108 DTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSL  187 (359)
Q Consensus       108 DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~  187 (359)
                      ||||+++||+|..|. +..|..++.|++++|+||+..++.|.+.|++|++.|.++.|+|++++..++++.||++....+.
T Consensus        76 DTGSs~lWV~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~  154 (370)
T 3psg_A           76 DTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGS  154 (370)
T ss_dssp             ETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCG
T ss_pred             eCCCCccEEECCCCC-CcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEEEEEEEEeeCCcccCCeEEEEEEeeccc
Confidence            999999999999996 6789999999999999999999999999999999999999999999999999999999887665


Q ss_pred             cccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEECcCCCCCeeeceEEEecCCCC
Q 018226          188 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKG  267 (359)
Q Consensus       188 ~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~  267 (359)
                      .+....++||||||++..+....+|++++|++||+|++++||+||++..  ..+|+|+|||+|+++|+|+++|+|+.+.+
T Consensus       155 ~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y~g~l~~~pv~~~~  232 (370)
T 3psg_A          155 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND--DSGSVVLLGGIDSSYYTGSLNWVPVSVEG  232 (370)
T ss_dssp             GGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEET
T ss_pred             ccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCC--CCCeEEEEEeeChHhcCCcceeecccccc
Confidence            6677788999999999988877889999999999999999999999862  34899999999999999999999999999


Q ss_pred             ceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC----ceEEecCCc------ccccccceee
Q 018226          268 YWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT----GIVSQECKA------VVSQYGEEII  337 (359)
Q Consensus       268 ~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~~~C~~------~~~~fg~~~~  337 (359)
                      +|.|.+++|.||++.+. +..++.|||||||+++++|++++++|.+++++.    +.|.+||+.      +.+.||+..+
T Consensus       233 ~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~~~v~C~~~~~lP~i~f~~~g~~~  311 (370)
T 3psg_A          233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQY  311 (370)
T ss_dssp             TEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEE
T ss_pred             eeEEEEeEEEECCEEEe-cCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCcEEEECCCcccCCcEEEEECCEEE
Confidence            99999999999998875 667899999999999999999999999999985    779999996      3568888777


Q ss_pred             ehhhccccchhhcccccceee
Q 018226          338 NMLLAKVSAKLSLRHYKKWLI  358 (359)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~  358 (359)
                      .++++++...     ..+.|+
T Consensus       312 ~l~~~~yi~~-----~~~~C~  327 (370)
T 3psg_A          312 PLSPSAYILQ-----DDDSCT  327 (370)
T ss_dssp             EECHHHHEEE-----CSSCEE
T ss_pred             EECHHHhccc-----CCCEEE
Confidence            7766544332     456676
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-78
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 7e-74
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-72
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 6e-72
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-71
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 7e-70
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-69
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 3e-69
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-68
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 4e-65
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-63
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 5e-62
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 9e-62
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-60
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 3e-58
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-57
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-57
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 8e-57
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 9e-57
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-48
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-41
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-37
d1nkla_78 a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax 6e-08
d2gtga178 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) 8e-08
d1of9a_77 a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica 9e-08
d1qdma1104 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Horde 2e-07
d1l9la_74 a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom 0.002
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  241 bits (616), Expect = 3e-78
 Identities = 195/243 (80%), Positives = 221/243 (90%)

Query: 76  DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRS 135
           + DIVALKNYM+AQYFGEIG+GTPPQ FTVIFDTGSSNLWVPS+KCYFSIACY HS+Y++
Sbjct: 3   EGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKA 62

Query: 136 GRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFD 195
           G SSTYKKNGK A I YGTG+I+G+FSED V +GDLVVKDQEFIEAT+EP +TFL+AKFD
Sbjct: 63  GASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFD 122

Query: 196 GILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYK 255
           GILGLGF+EISVGKAVPVWY M+ QGLV++PVFSFW NR+ DE EGGEI+FGGMDP HY 
Sbjct: 123 GILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYV 182

Query: 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAI 315
           GEHTYVPVTQKGYWQFDMGDV++ G++TGFCAGGCAAIADSGTSLLAGPT IIT++N  I
Sbjct: 183 GEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKI 242

Query: 316 GAT 318
           GA 
Sbjct: 243 GAA 245
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78 Back     information, alignment and structure
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77 Back     information, alignment and structure
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 104 Back     information, alignment and structure
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.96
d1bxoa_ 323 Acid protease {Fungus (Penicillium janthinellum), 80.56
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure