Citrus Sinensis ID: 018228


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDEGTRKYRSRTFVPTGHEMDAVRRNKLDEIQLSSVSSSDASTPKHSSTMPDTAHSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAKVPAAKENETR
cEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHHccEEEEEEHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEHHEccccHEEEEcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccHHHHHHHHccHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccHccccccEEEEEEEEccccccccccccccccccHHccccccEcccccccccccccEEEccccccccccccccccccc
msflslvfperaIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLsgrvlkpsvclmtcclppvpldgrfirRCKQGCVQFVILKPILVVATLILFangkykdgnfspdqgyLYITIIYTISYTMALYALVLFYMACRdllhpfnpvpkfiMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHlfafpykeyaganiggsrgltGSLAHALKLndfyhdtvhqfaptyhdyvlynhnegdegtrkyrsrtfvptghemdAVRRnkldeiqlssvsssdastpkhsstmpdtahsdaiKSSLLVDvsnslsapydmalididmssypakvpaakenetr
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANgkykdgnfspdQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHnegdegtrkyrsrtfvptghemdavrrNKLDEIQLssvsssdastpkhsstmpdtahSDAIKSSLLVDVSNSLSAPYDMALIDIDmssypakvpaakenetr
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGylyitiiytisytMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDEGTRKYRSRTFVPTGHEMDAVRRNKLDEIQLSSVSSSDASTPKHSSTMPDTAHSDAIKssllvdvsnslsAPYDMALIDIDMSSYPAKVPAAKENETR
**FLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHN*************************************************************************APYDMALIDI******************
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYH*************************************************************************************************************
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDEGTRKYRSRTFVPTGHEMDAVRRNKLDEIQ**********************HSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAK**********
MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHN*************************RNKLDEIQLSSVSSS********************************SAPYDMALIDIDMSSYPAKV*********
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDEGTRKYRSRTFVPTGHEMDAVRRNKLDEIQLSSVSSSDASTPKHSSTMPDTAHSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAKVPAAKENETR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q8BG09407 Transmembrane protein 184 yes no 0.699 0.616 0.425 2e-58
A2VDL9407 Transmembrane protein 184 yes no 0.699 0.616 0.418 5e-57
Q9Y519407 Transmembrane protein 184 yes no 0.699 0.616 0.418 6e-57
Q6ZMB5413 Transmembrane protein 184 no no 0.690 0.600 0.403 8e-55
Q4QQS1425 Transmembrane protein 184 no no 0.690 0.583 0.386 3e-53
Q1RMW2414 Transmembrane protein 184 no no 0.688 0.596 0.401 8e-53
Q3UFJ6425 Transmembrane protein 184 no no 0.690 0.583 0.382 9e-53
Q28CV2443 Transmembrane protein 184 no no 0.598 0.485 0.392 2e-39
Q6GQE1444 Transmembrane protein 184 N/A no 0.598 0.484 0.387 4e-39
Q54WM0351 Transmembrane protein 184 yes no 0.587 0.601 0.380 1e-36
>sp|Q8BG09|T184B_MOUSE Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 2   SFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVC 58
           S+LSL+F    +  +YF ++R+ YEA+VIYNFLSLC  ++GG  A++  + G+ ++ S  
Sbjct: 95  SWLSLLFFTNDQYYVYFGTVRDCYEAFVIYNFLSLCYEYLGGESAIMSEIRGKAIESSCM 154

Query: 59  LMTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYI 118
             TCCL        F+R CKQ  +QF ++KP++ V+T+IL A GKY+DG+F    GYLY+
Sbjct: 155 YGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYLYV 214

Query: 119 TIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGL 178
           TIIY IS ++ALYAL LFY A R+LL P++PV KF M+KSV+FL++WQG+L+ +  K G 
Sbjct: 215 TIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGA 274

Query: 179 IENTDE----------AAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGS------R 222
           I   +           AA +QDFI+C+EM  AA+    AF YK YA   +         +
Sbjct: 275 IPKINSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMK 334

Query: 223 GLTGSLAHALKLNDFYHDTVHQFAPTYHDY 252
            ++ SL   +  +D   D +H F+P Y  Y
Sbjct: 335 SISSSLKETMNPHDIVQDAIHNFSPAYQQY 364




May activate the MAP kinase signaling pathway.
Mus musculus (taxid: 10090)
>sp|A2VDL9|T184B_BOVIN Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1 Back     alignment and function description
>sp|Q9Y519|T184B_HUMAN Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2 Back     alignment and function description
>sp|Q6ZMB5|T184A_HUMAN Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1 Back     alignment and function description
>sp|Q4QQS1|T184A_RAT Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1 Back     alignment and function description
>sp|Q1RMW2|T184A_BOVIN Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1 Back     alignment and function description
>sp|Q3UFJ6|T184A_MOUSE Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1 Back     alignment and function description
>sp|Q28CV2|T184C_XENTR Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q6GQE1|T184C_XENLA Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q54WM0|T1843_DICDI Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255543076420 conserved hypothetical protein [Ricinus 0.997 0.852 0.821 1e-175
224124260420 predicted protein [Populus trichocarpa] 0.994 0.85 0.820 1e-173
449453982420 PREDICTED: transmembrane protein 184B-li 0.997 0.852 0.808 1e-171
449490896389 PREDICTED: transmembrane protein 184B-li 0.997 0.920 0.808 1e-170
359494776414 PREDICTED: transmembrane protein 184A-li 1.0 0.867 0.786 1e-167
296080914380 unnamed protein product [Vitis vinifera] 1.0 0.944 0.786 1e-167
357511647420 Transmembrane protein 184A [Medicago tru 0.997 0.852 0.778 1e-166
356505717421 PREDICTED: transmembrane protein 184A-li 1.0 0.852 0.783 1e-166
356534951418 PREDICTED: transmembrane protein 184B-li 0.997 0.856 0.770 1e-161
356575269418 PREDICTED: transmembrane protein 184B-li 0.997 0.856 0.773 1e-160
>gi|255543076|ref|XP_002512601.1| conserved hypothetical protein [Ricinus communis] gi|223548562|gb|EEF50053.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/365 (82%), Positives = 328/365 (89%), Gaps = 7/365 (1%)

Query: 1   MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLM 60
           MSFLSLV P  AIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGR+LKPS CLM
Sbjct: 57  MSFLSLVLPASAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRILKPSCCLM 116

Query: 61  TCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITI 120
           TCCLPP+PLDGRFIRRCKQGC+QFVILKPILV  TL+L+A GKYKDGNFSP+Q YLY+TI
Sbjct: 117 TCCLPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGKYKDGNFSPNQAYLYLTI 176

Query: 121 IYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIE 180
           IYTISYTMALYAL LFY+ACRDLL PFNPVPKF++IKSVVFLTYWQGVLVFLAAKSG I+
Sbjct: 177 IYTISYTMALYALALFYVACRDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLAAKSGFIK 236

Query: 181 NTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHD 240
           + +EAA+FQ+FI+C+EMLIAAVGHLFAFPYKEYAGANIGGS GLTGSLAHALKLNDFYHD
Sbjct: 237 DAEEAAQFQNFIICVEMLIAAVGHLFAFPYKEYAGANIGGSYGLTGSLAHALKLNDFYHD 296

Query: 241 TVHQFAPTYHDYVLYNHNEGDEGTRKYRSRTFVPTGHEMDAVRR------NKLDEIQLSS 294
           TVHQFAPTYHDYVLYNH+EGDEGTRKYRSRTFVPTG EMDA+RR      NKLDEIQLSS
Sbjct: 297 TVHQFAPTYHDYVLYNHSEGDEGTRKYRSRTFVPTGQEMDAIRRNKHMFGNKLDEIQLSS 356

Query: 295 VSSSDASTPKHSSTMPDTAHSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAKVPAAK 354
            SSS  STPK+  + PD+   D +KSSLLVD SNS + PYDM+LID+D+SSYPA+VPAA 
Sbjct: 357 HSSSGTSTPKNIVSAPDSVQRDTMKSSLLVDASNSFT-PYDMSLIDMDLSSYPAQVPAAN 415

Query: 355 ENETR 359
           E   R
Sbjct: 416 ETGIR 420




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124260|ref|XP_002329979.1| predicted protein [Populus trichocarpa] gi|224124264|ref|XP_002329980.1| predicted protein [Populus trichocarpa] gi|118487141|gb|ABK95399.1| unknown [Populus trichocarpa] gi|222871404|gb|EEF08535.1| predicted protein [Populus trichocarpa] gi|222871405|gb|EEF08536.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453982|ref|XP_004144735.1| PREDICTED: transmembrane protein 184B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490896|ref|XP_004158742.1| PREDICTED: transmembrane protein 184B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359494776|ref|XP_002269971.2| PREDICTED: transmembrane protein 184A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296080914|emb|CBI18744.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357511647|ref|XP_003626112.1| Transmembrane protein 184A [Medicago truncatula] gi|87240996|gb|ABD32854.1| Protein of unknown function [Medicago truncatula] gi|355501127|gb|AES82330.1| Transmembrane protein 184A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356505717|ref|XP_003521636.1| PREDICTED: transmembrane protein 184A-like [Glycine max] Back     alignment and taxonomy information
>gi|356534951|ref|XP_003536014.1| PREDICTED: transmembrane protein 184B-like [Glycine max] Back     alignment and taxonomy information
>gi|356575269|ref|XP_003555764.1| PREDICTED: transmembrane protein 184B-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2146799422 AT5G26740 [Arabidopsis thalian 1.0 0.850 0.696 1.3e-137
TAIR|locus:2074504422 AT3G05940 [Arabidopsis thalian 0.980 0.834 0.694 3.7e-135
MGI|MGI:2445179407 Tmem184b "transmembrane protei 0.805 0.710 0.370 4.1e-49
UNIPROTKB|A2VDL9407 TMEM184B "Transmembrane protei 0.699 0.616 0.385 6e-48
UNIPROTKB|Q9Y519407 TMEM184B "Transmembrane protei 0.699 0.616 0.385 7.7e-48
ZFIN|ZDB-GENE-050417-219416 zgc:112178 "zgc:112178" [Danio 0.699 0.603 0.374 3.8e-46
WB|WBGene00009574398 F40E10.6 [Caenorhabditis elega 0.601 0.542 0.441 1.2e-45
MGI|MGI:2385897425 Tmem184a "transmembrane protei 0.688 0.581 0.361 3.4e-45
RGD|1306702425 Tmem184a "transmembrane protei 0.688 0.581 0.365 4.4e-45
UNIPROTKB|Q6ZMB5413 TMEM184A "Transmembrane protei 0.596 0.518 0.417 5e-44
TAIR|locus:2146799 AT5G26740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
 Identities = 255/366 (69%), Positives = 294/366 (80%)

Query:     1 MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLM 60
             MSFLSLV P+ +IYF+SIREVYEAWVIYNFLSLCLAWVGGPG+VVLSLSGR LKPS  LM
Sbjct:    57 MSFLSLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRSLKPSWSLM 116

Query:    61 TCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGXXXXXX 120
             TCC PP+ LDGRFIRRCKQGC+QFVILKPILV  TL+L+A GKYKDGNF+PDQ       
Sbjct:   117 TCCFPPLTLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGKYKDGNFNPDQAYLYLTI 176

Query:   121 XXXXXXXMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIE 180
                    +ALYALVLFYMACRDLL PFNPVPKF++IKSVVFLTYWQGVLVFLAAKSG I+
Sbjct:   177 IYTISYTVALYALVLFYMACRDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLAAKSGFIK 236

Query:   181 NTDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHD 240
             + + AA FQ+FI+C+EMLIAA  H +AFPYKEYAGAN+GGS   +GSL+HA+KLNDFYHD
Sbjct:   237 SAEAAAHFQNFIICVEMLIAAACHFYAFPYKEYAGANVGGSGSFSGSLSHAVKLNDFYHD 296

Query:   241 TVHQFAPTYHDYVLYNHNEG-DEGTRKYRSRTFVPTGHEMDAVRRNK------LDEIQLS 293
             TVHQFAPTYHDYVLYNH +G DEGT+KYRSRTFVPTG EMDA+R+NK      +D + +S
Sbjct:   297 TVHQFAPTYHDYVLYNHQDGGDEGTKKYRSRTFVPTGQEMDAMRKNKPVYANKIDGVSVS 356

Query:   294 SVSSSDASTPKHSSTMPDTAHSDAIKXXXXXXXXXXXXAPYDMALIDIDMSSYPAKVPAA 353
             S  SS+AS+PK SS   D A SDA+K              YDM+LIDID+SS+P+ VP+A
Sbjct:   357 SSLSSEASSPKSSSVTSDPARSDAVKSSLLVDASDSLETMYDMSLIDIDLSSFPSNVPSA 416

Query:   354 KENETR 359
              E+  R
Sbjct:   417 SESGPR 422




GO:0005576 "extracellular region" evidence=ISM
TAIR|locus:2074504 AT3G05940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2445179 Tmem184b "transmembrane protein 184b" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDL9 TMEM184B "Transmembrane protein 184B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y519 TMEM184B "Transmembrane protein 184B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-219 zgc:112178 "zgc:112178" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00009574 F40E10.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2385897 Tmem184a "transmembrane protein 184a" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306702 Tmem184a "transmembrane protein 184A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZMB5 TMEM184A "Transmembrane protein 184A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pm.C_1310001
SubName- Full=Putative uncharacterized protein; (420 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
pfam03619272 pfam03619, Solute_trans_a, Organic solute transpor 1e-94
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha Back     alignment and domain information
 Score =  282 bits (725), Expect = 1e-94
 Identities = 106/220 (48%), Positives = 148/220 (67%), Gaps = 8/220 (3%)

Query: 2   SFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGR--VLKPSVCL 59
           SFLSL+FP+ AIYF+ IR+ YEA+VIY F SL +A++GG   ++  L G+  +  P   L
Sbjct: 53  SFLSLLFPKAAIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPPIRHPFPLL 112

Query: 60  MTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYIT 119
             C L     D  F  RCK+G +Q+V++KP+  +  +IL A G Y +G+FSPD GYLY+T
Sbjct: 113 TKCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVYGEGSFSPDSGYLYLT 172

Query: 120 IIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLI 179
           IIY IS ++ALY LVLFY A +D L PF P+ KF+ IK ++F ++WQGVL+ +    GLI
Sbjct: 173 IIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSFWQGVLISILVSLGLI 232

Query: 180 ENTDE------AAKFQDFILCIEMLIAAVGHLFAFPYKEY 213
           + T+       +A  Q+F++CIEM I A+ HL+AFPYK Y
Sbjct: 233 KPTEAWEEPELSAGIQNFLICIEMFIFAIAHLYAFPYKPY 272


This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG2641386 consensus Predicted seven transmembrane receptor - 100.0
PF03619274 Solute_trans_a: Organic solute transporter Ostalph 100.0
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] Back     alignment and domain information
Probab=100.00  E-value=1.5e-65  Score=507.94  Aligned_cols=258  Identities=43%  Similarity=0.824  Sum_probs=237.9

Q ss_pred             eEEEEEccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHhHhhcCCCccCc-cccccccCCCCC-CChhHHHHhhc
Q 018228            2 SFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPS-VCLMTCCLPPVP-LDGRFIRRCKQ   79 (359)
Q Consensus         2 S~lsL~fPraaiy~d~iRd~YEAfvIY~Ff~LL~~ylGG~~~~v~~l~~~~~~~~-~~~~~CClp~~~-~~~~fLr~~K~   79 (359)
                      ||+|++.|+.++|+|++||||||||||+|++||++|+|||++++..+++++.+.+ .+|+|||+|++. ++++++|+||+
T Consensus        85 S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~~~~~~~~P~cc~~~p~~~~~~~~lr~~K~  164 (386)
T KOG2641|consen   85 SFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRLIRVNHTPPFCCFFPPTVRLTPKFLRRCKQ  164 (386)
T ss_pred             HHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccCCcccCCCCceeccCccccCCHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999998844 455555555443 78999999999


Q ss_pred             ceeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhHHHHH
Q 018228           80 GCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSV  159 (359)
Q Consensus        80 gVLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~IKlV  159 (359)
                      ||+||+|+||+++++++++++.|+|++|++++   |+|+++++|+|+++|+|||.+||+++|++|.||+|+.||+|+|+|
T Consensus       165 ~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~i  241 (386)
T KOG2641|consen  165 GVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLI  241 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            99999999999999999999999999999987   899999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHcCCCCC------hhHHHHhhhhHHHHHHHHHHHHhhhcccccccccccCCC-------CCchHH
Q 018228          160 VFLTYWQGVLVFLAAKSGLIEN------TDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGG-------SRGLTG  226 (359)
Q Consensus       160 VFlsfwQ~vii~lL~~~GvI~~------~~~a~~iqn~LiCiEM~ifAilh~~AF~~k~Y~~~~~~~-------~~~~~~  226 (359)
                      ||+++||++++.+|++.|.++.      +..++++||++||+||+++|++|+||||+++|.......       ..+..+
T Consensus       242 vf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~~~~~~~~~~~~~  321 (386)
T KOG2641|consen  242 VFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSCDYRSVDMFSISS  321 (386)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhccccccccccccccccccch
Confidence            9999999999999999999983      346899999999999999999999999999998876655       345678


Q ss_pred             HHHhhcCcchHHHHHHhhcccCcceeeeeccCCCCC
Q 018228          227 SLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDE  262 (359)
Q Consensus       227 s~~~~~~~~D~~~D~~~~f~~~y~~y~~~~~~~~~~  262 (359)
                      .++|+++++|...|..|+|+++|++|..+++.++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  357 (386)
T KOG2641|consen  322 SLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALS  357 (386)
T ss_pred             HHHHhhcccCcccccccCCCcccccccccccCcccc
Confidence            999999999999999999999999999998665543



>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00