Citrus Sinensis ID: 018238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHEHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mnspstqyvtprrlgiyepihQMSTWVENfksngnpntsapiIVEVdtrldnqsedtshgsqgpfckyeqeaskpFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQglyvgsgvegvhmgfsgtvNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMsgmwktpaerfffwiggfrpsellkvlvpqleplteqqLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGqlaevgynprtgtaMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLwanrprept
Flexible Loop (DISEMBL)
mnspstqyvtprrlGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQsedtshgsqgpfcKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRalsslwanrprept
Low Complexity Region (SEG)
MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT
Disordered region (IsUnstruct)
*********TPRRLGIYEPIHQMSTWVENF************I****************************************************************RLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSC*****************LAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWA*******
Disordered Region (DISOPRED)
******************************************************************************************************QLETSR************************************SAFEMEYGHWLEEQSRQICELRNA**********RILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDV********************LQQTLAETVAA***************MDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSL**NR*****
Disordered Region (DISEMBL)
MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLD************PFCKYEQEASKPFDKIQRRLA************KKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT
Disordered Region (DISPRO)
********VTPRRLGIYEPIHQMSTWVEN**********************************************FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWAN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q39237	368	Transcription factor TGA1	yes	no	1.0	0.975	0.717	1e-151
Q39162	364	Transcription factor TGA4	no	no	1.0	0.986	0.703	1e-148
P14232	359	TGACG-sequence-specific D	N/A	no	0.958	0.958	0.670	1e-133
Q93ZE2	368	Transcription factor TGA7	no	no	0.969	0.945	0.573	1e-117
Q39234	384	Transcription factor TGA3	no	no	0.969	0.906	0.600	1e-114
Q41558	476	Transcription factor HBP-	N/A	no	0.935	0.705	0.559	1e-98
P23923	332	Transcription factor HBP-	N/A	no	0.777	0.840	0.638	2e-98
O24160	456	TGACG-sequence-specific D	N/A	no	0.777	0.611	0.637	3e-95
P43273	330	Transcription factor TGA2	no	no	0.824	0.896	0.588	3e-93
Q39140	330	Transcription factor TGA6	no	no	0.891	0.969	0.555	1e-92

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/368 (71%), Positives = 303/368 (82%), Gaps = 9/368 (2%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSN---GNPNTSAPIIVEVDTRLDNQ-SED 56
           MNS ST +V PRR+GIYEP+HQ   W E+FKSN   G  NT   II+  + +LDN  SED
Sbjct: 1   MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED 60

Query: 57  TSHGSQGPFCKYEQEAS--KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQL 114
           TSHG+ G    ++QEAS  +  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL+QL
Sbjct: 61  TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL 120

Query: 115 EQELDRARQQGLYVGSGVEGVHMGFSGTVN---SAFEMEYGHWLEEQSRQICELRNALQA 171
           EQELDRARQQG YVG+G++   +GFS T+N   +AFEMEYGHW+EEQ+RQICELR  L  
Sbjct: 121 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG 180

Query: 172 HIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSEL 231
           HI D+ELR LV+  M HYFELFRMK++AAKADVF+VMSGMW+T AERFF WIGGFRPS+L
Sbjct: 181 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL 240

Query: 232 LKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNP 291
           LKVL+P  + LT+QQL+DVCNL+QSCQQAEDAL+QGM+KLQ TLA+ VAAGQL E  Y P
Sbjct: 241 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP 300

Query: 292 RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLW 351
           +  +AMD+LEALVSFV+QADHLR ETLQQM RILTTRQAARGLLALGEYF RLRALSS W
Sbjct: 301 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW 360

Query: 352 ANRPREPT 359
           A R REPT
Sbjct: 361 ATRHREPT 368

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score =  524 bits (1350), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/364 (70%), Positives = 298/364 (81%), Gaps = 5/364 (1%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MN+ ST +V PRR  +YEP++Q+  W E+FK+NG+  T   II+  + + D+ SEDTSHG
Sbjct: 1   MNTTSTHFVPPRRFEVYEPLNQIGMWEESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSHG 60

Query: 61  SQGPFCKYEQEAS--KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQEL 118
           ++G   K++QEAS  +  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL+ LEQEL
Sbjct: 61  TEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQEL 120

Query: 119 DRARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGD 175
           DRARQQG YVG+GV+   + FS  ++S   AFEMEYGHW+EEQ+RQICELR  L   + D
Sbjct: 121 DRARQQGFYVGNGVDTNALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSD 180

Query: 176 VELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVL 235
           +ELR LV+  M HYF+LFRMK+ AAK DVFYVMSGMWKT AERFF WIGGFRPSELLKVL
Sbjct: 181 IELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240

Query: 236 VPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGT 295
           +P  +PLT+QQL+DVCNLRQSCQQAEDALSQGM+KLQ TLAE+VAAG+L E  Y P+   
Sbjct: 241 LPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTC 300

Query: 296 AMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRP 355
           AM++LEALVSFV+QADHLR ETLQQM RILTTRQAARGLLALGEYF RLRALSS WA R 
Sbjct: 301 AMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQ 360

Query: 356 REPT 359
           REPT
Sbjct: 361 REPT 364

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1

 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 284/361 (78%), Gaps = 17/361 (4%)

Query: 14  LGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDT-----------RLDNQSEDTSHGSQ 62
           +GI +PIHQ+  W ++F S+  P+TSA +I+EVD            RLDN++EDTSHG+ 
Sbjct: 1   MGICDPIHQLGMW-DDFNSS-FPSTSATMILEVDKCLEDQIPIMEKRLDNETEDTSHGTV 58

Query: 63  GPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122
           G   +YE E SKP +K+ RRLAQNREAARKSRLRKKAYVQQLE S+LKL+QLEQEL+RAR
Sbjct: 59  GTSNRYEPETSKPVEKVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQELERAR 118

Query: 123 QQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELRNALQAHIGDVELR 179
           +QG+ VG GV+   + +SGT +S    F+MEYGHW+EEQ+RQ  +LR AL + IG+ ELR
Sbjct: 119 KQGMCVGGGVDASQLSYSGTASSGTAVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELR 178

Query: 180 ILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQL 239
           I+VD  ++HYF+LFRMK TAAKADV Y+MSGMWKT AERFF WIGGFRPSELLKVL P L
Sbjct: 179 IIVDGYLNHYFDLFRMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKVLTPHL 238

Query: 240 EPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYN-PRTGTAMD 298
           E LTEQQL +VCNL QSCQQAEDALSQGM KL Q LAE VAAG+L E  Y  P+ G A++
Sbjct: 239 ELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVAAGRLGEGNYTLPQMGPAIE 298

Query: 299 KLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREP 358
           KLE LV FV+QADHLRQETLQQMSRIL T QAA+GLLALGEYF RLR LSS WA R REP
Sbjct: 299 KLEDLVRFVNQADHLRQETLQQMSRILNTCQAAQGLLALGEYFERLRVLSSQWATRLREP 358

Query: 359 T 359
           T
Sbjct: 359 T 359

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Nicotiana tabacum (taxid: 4097)

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/375 (57%), Positives = 280/375 (74%), Gaps = 27/375 (7%)

Query: 2   NSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGN---PNTSAPIIVEVDTRLDNQSE--- 55
           +S  TQ  + R +GIYEP  Q+  W   FKS+ N   PNT+   I++VD R+D+ +    
Sbjct: 4   SSSPTQLASLRDMGIYEPFQQIVGWGNVFKSDINDHSPNTATSSIIQVDPRIDDHNNNIK 63

Query: 56  ---DTSHG---SQGPFCKYEQEAS-KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 108
              D+SH    ++ P     Q+   +  DK++RRLAQNREAARKSRLRKKAYVQQLE SR
Sbjct: 64  INYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLEESR 123

Query: 109 LKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICEL 165
           LKL QLEQEL++ +QQG          H+G SG++N+   +FEMEY HWL+EQSR++ EL
Sbjct: 124 LKLSQLEQELEKVKQQG----------HLGPSGSINTGIASFEMEYSHWLQEQSRRVSEL 173

Query: 166 RNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGG 225
           R ALQ+HI D+EL++LV++ ++HY  LF+MK+ AAKADVFY++SGMW+T  ERFF WIGG
Sbjct: 174 RTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWIGG 233

Query: 226 FRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLA 285
           FRPSELL V++P L+PLT+QQ+++V NL+QS QQAEDALSQG+DKLQQ+LAE++    + 
Sbjct: 234 FRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVI 293

Query: 286 EVGYNP-RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRL 344
           E  + P     A++ L+AL  FV+QADHLRQ+TLQQM++ILTTRQ+ARGLLALGEY  RL
Sbjct: 294 ESTHYPTHMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLHRL 353

Query: 345 RALSSLWANRPREPT 359
           RALSSLWA RP+EPT
Sbjct: 354 RALSSLWAARPQEPT 368

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 273/368 (74%), Gaps = 20/368 (5%)

Query: 12  RRLGIYEPIHQMSTWVENFKSNGNPNTSAPII-------VEVDTRL----DNQSEDTSHG 60
           R +G+YEP  Q+S W   FKS+ N  TS           +EVD R     +N+   TS  
Sbjct: 17  RDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSVY 76

Query: 61  SQG----PFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQ 116
           +      P    +Q+  +  DK++RRLAQNREAARKSRLRKKA+VQQLE SRLKL QLEQ
Sbjct: 77  NNSLEAEPSSNNDQDEDRINDKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQ 136

Query: 117 ELDRARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHI 173
           EL RARQQGL V +  +  ++G +G +NS   AFEMEY HWLEEQ+R++ E+R ALQAHI
Sbjct: 137 ELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHI 196

Query: 174 GDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLK 233
           GD+EL++LVD+ ++HY  LFRMK  AAKADVF++MSGMW+T  ERFF WIGGFRPSELL 
Sbjct: 197 GDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLN 256

Query: 234 VLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVA--AGQLAEVGYNP 291
           V++P +EPLT+QQL++V NL+QS QQAE+ALSQG+DKLQQ L E++A     +  V +  
Sbjct: 257 VVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQIKVVESVNHGA 316

Query: 292 RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLW 351
              +AM+ L+AL SFV+QADHLRQ+TLQQMS+ILTTRQAARGLLALGEYF RLRALSSLW
Sbjct: 317 PMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLW 376

Query: 352 ANRPREPT 359
           A RPRE T
Sbjct: 377 AARPREHT 384

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/345 (55%), Positives = 234/345 (67%), Gaps = 9/345 (2%)

Query: 21  HQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFD-KI 79
           H    W E+  ++ +P T      ++D    NQ  +    +         ++    D K 
Sbjct: 133 HNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTASDSSDKSRDKLDHKS 192

Query: 80  QRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGF 139
            RRLAQNREAARKSRLRKKAY+Q LE+SRLKL QLEQEL RARQQG+++ S  +      
Sbjct: 193 LRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELQRARQQGIFISSSGDQSQSA- 251

Query: 140 SGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTA 199
           SG    AF+MEY  WLEE ++ I ELR A  AH GD +LR +VD+ MS Y E FR+K  A
Sbjct: 252 SGNGAVAFDMEYARWLEEHNKHINELRAAANAHAGDDDLRKIVDSIMSQYDEFFRLKGVA 311

Query: 200 AKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQ 259
           AKADVF+V+SGMWKTPAER F W+GGFR SELLK+L  QLEPLTEQQL  +CNL+QS QQ
Sbjct: 312 AKADVFHVLSGMWKTPAERCFMWLGGFRSSELLKLLAGQLEPLTEQQLTGICNLQQSSQQ 371

Query: 260 AEDALSQGMDKLQQTLAETVAAGQLAEVG-------YNPRTGTAMDKLEALVSFVSQADH 312
           AEDALSQGM+ LQQ+LAET+A+G L   G       Y  +   AM KL  L +F+ QAD+
Sbjct: 372 AEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQMAMAMGKLGTLENFLRQADN 431

Query: 313 LRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           LR +TLQQM RILTTRQ+AR LLA+ +YF RLRALSSLW  RPRE
Sbjct: 432 LRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/288 (63%), Positives = 215/288 (74%), Gaps = 9/288 (3%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHM 137
           K  RRLAQNREAARKSRLRKKAYVQQLE SRLKL QLEQEL RARQQG+++ S  +  H 
Sbjct: 46  KTMRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGIFISSSADQSH- 104

Query: 138 GFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKT 197
             SG    AF+ EY  WLEE +RQ+ ELR A+ AH GD ELR +V+  MSHY E+F+ K 
Sbjct: 105 SMSGNGALAFDTEYARWLEEHNRQVNELRAAVNAHAGDTELRSVVEKIMSHYDEIFKQKG 164

Query: 198 TAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSC 257
            AAKADVF+V+SGMWKTPAER F W+GGFRPSELLK+L  QLEPLTEQQL  +CNL+QS 
Sbjct: 165 NAAKADVFHVLSGMWKTPAERCFLWLGGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSS 224

Query: 258 QQAEDALSQGMDKLQQTLAETVAAGQLAE--------VGYNPRTGTAMDKLEALVSFVSQ 309
           QQAEDALSQGM+ LQQ+LAET+A    +           Y  +   AM KL  L +F+SQ
Sbjct: 225 QQAEDALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLENFLSQ 284

Query: 310 ADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           AD+LRQ+TLQQM RILTTRQ+AR LL + +Y  RLRALSSLW  RP+E
Sbjct: 285 ADNLRQQTLQQMQRILTTRQSARALLVISDYSSRLRALSSLWLARPKE 332

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score =  348 bits (894), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/287 (63%), Positives = 211/287 (73%), Gaps = 8/287 (2%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHM 137
           K  RRLAQNREAARKSRLRKKAYVQQLE SRLKL QLEQ+L RARQQG Y+ S +     
Sbjct: 168 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQRARQQGKYI-SNIADQSN 226

Query: 138 GFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKT 197
           G       AF+ EY  WLEE ++ I ELR A+ AH  D ELR +V+   +H+ E+FR+K 
Sbjct: 227 GVGANGPLAFDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRVKG 286

Query: 198 TAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSC 257
            AAKADVF+V+SGMWKTPAER F WIGGFRPSELLK+LV QLEPLTEQQL  + NL+QS 
Sbjct: 287 NAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQSS 346

Query: 258 QQAEDALSQGMDKLQQTLAETVAAGQLAEVG-------YNPRTGTAMDKLEALVSFVSQA 310
            QAEDALSQGM+ LQQ+LAET+A G  A  G       Y  +   AM KL  L  F+ QA
Sbjct: 347 HQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLRQA 406

Query: 311 DHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           D+LRQ+TLQQM R+LTTRQ+AR LLA+ EYF RLRALSSLW  RPRE
Sbjct: 407 DNLRQQTLQQMHRVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Nicotiana tabacum (taxid: 4097)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score =  342 bits (876), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 229/311 (73%), Gaps = 15/311 (4%)

Query: 60  GSQGPFCKY------EQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQ 113
           GS+G           ++   K   K  RRLAQNREAARKSRLRKKAYVQQLE SRLKL Q
Sbjct: 22  GSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQ 81

Query: 114 LEQELDRARQQGLYV-GSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAH 172
           LEQEL RARQQG+++ G+G +    G +G +  AF+ E+  WLEE+++Q+ ELR+AL AH
Sbjct: 82  LEQELQRARQQGVFISGTGDQAHSTGGNGAL--AFDAEHSRWLEEKNKQMNELRSALNAH 139

Query: 173 IGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELL 232
            GD ELRI+VD  M+HY ELFR+K+ AAK DVF+++SGMWKTPAER F W+GGFR SELL
Sbjct: 140 AGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELL 199

Query: 233 KVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAE------ 286
           K+L  QLEP+TE+QL+ + NL+Q+ QQAEDALSQGM+ LQQ+LA+T+++G L        
Sbjct: 200 KLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSGNV 259

Query: 287 VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRA 346
             Y  +   AM KL  L  F+ QAD+LR +TLQQM R+LTTRQ+AR LLA+ +YF RLRA
Sbjct: 260 ASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRA 319

Query: 347 LSSLWANRPRE 357
           LSSLW  RPRE
Sbjct: 320 LSSLWLARPRE 330

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/331 (55%), Positives = 234/331 (70%), Gaps = 11/331 (3%)

Query: 36  PNTSAPIIVEVDTRLDNQS--EDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKS 93
            +TS+   V  D   D++    D  H         ++   K   K  RRLAQNREAARKS
Sbjct: 2   ADTSSRTDVSTDGDTDHRDLGSDRGHMHAAASDSSDRSKDKLDQKTLRRLAQNREAARKS 61

Query: 94  RLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVH-MGFSGTVNSAFEMEYG 152
           RLRKKAYVQQLE SRLKL QLEQEL RARQQG+++ S  +  H  G +G +  AF+ E+ 
Sbjct: 62  RLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTGGNGAL--AFDAEHS 119

Query: 153 HWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMW 212
            WLEE++RQ+ ELR+AL AH GD ELRI+VD  M+HY ELFR+K+ AAK DVF+++SGMW
Sbjct: 120 RWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMW 179

Query: 213 KTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQ 272
           KTPAER F W+GGFR SELLK+L  QLEP+TE+Q++ + +L+Q+ QQAEDALSQGM+ LQ
Sbjct: 180 KTPAERCFLWLGGFRSSELLKLLANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQ 239

Query: 273 QTLAETVAAGQLAE------VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILT 326
           Q+LA+T+++G L          Y  +   AM +L  L  F+ QAD+LR +TLQQM R+LT
Sbjct: 240 QSLADTLSSGTLGSSSSDNVASYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRVLT 299

Query: 327 TRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           TRQ+AR LLA+ +Y  RLRALSSLW  RPRE
Sbjct: 300 TRQSARALLAIHDYSSRLRALSSLWLARPRE 330

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
225438607	362	PREDICTED: transcription factor TGA1 [Vi	0.997	0.988	0.778	1e-167
147825362	389	hypothetical protein VITISV_012435 [Viti	0.997	0.920	0.724	1e-163
296082477	349	unnamed protein product [Vitis vinifera]	0.963	0.991	0.779	1e-162
224093812	372	predicted protein [Populus trichocarpa]	0.994	0.959	0.739	1e-158
363807762	362	uncharacterized protein LOC100793353 [Gl	1.0	0.991	0.745	1e-157
15148922	362	TGA-type basic leucine zipper protein TG	1.0	0.991	0.737	1e-155
351722999	362	bZIP transcription factor bZIP52 [Glycin	1.0	0.991	0.737	1e-154
224081214	362	predicted protein [Populus trichocarpa]	0.997	0.988	0.736	1e-153
357463481	363	Transcription factor TGA1 [Medicago trun	1.0	0.988	0.716	1e-151
124361256	373	TGA transcription factor 1 [Populus trem	0.997	0.959	0.712	1e-150

>gi|225438607|ref|XP_002280782.1| PREDICTED: transcription factor TGA1 [Vitis vinifera]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/361 (77%), Positives = 318/361 (88%), Gaps = 3/361 (0%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS ST +VT RR+GIYEP+HQ+STW E+FK+NG PNTSA  I E++ +LDNQSEDTSHG
Sbjct: 1   MNSSSTHFVTSRRMGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
           + GP  KY+QEA+KP DK+QRRLAQNREAARKSRLRKKAYVQ+LE+SR+KL+QLEQEL+R
Sbjct: 61  TPGPSDKYDQEATKPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELER 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGDVE 177
           ARQQGLY+G G++  H+GFSG VNS   AFEMEYGHW+EEQS QICELR AL AHI DVE
Sbjct: 121 ARQQGLYIGGGLDAGHLGFSGAVNSGIAAFEMEYGHWVEEQSSQICELRTALHAHISDVE 180

Query: 178 LRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVP 237
           LRILV+  M+HYF LFRMK  AAKADVFY+MSGMWKT AERFF WIGGFRPSELLKVLVP
Sbjct: 181 LRILVETAMNHYFNLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSELLKVLVP 240

Query: 238 QLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAM 297
           QL+PLT+QQ++DVCNLRQSCQQAEDAL+QGM+KLQQ LAE VAAGQL E  Y P+  TA+
Sbjct: 241 QLDPLTDQQILDVCNLRQSCQQAEDALTQGMEKLQQILAEAVAAGQLGEGSYIPQLATAL 300

Query: 298 DKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           +KLEA+VSFV+QADHLRQETLQQM RILT RQAARGLLALGEYF RLRALSSLWA RPRE
Sbjct: 301 EKLEAVVSFVNQADHLRQETLQQMVRILTVRQAARGLLALGEYFQRLRALSSLWATRPRE 360

Query: 358 P 358
           P
Sbjct: 361 P 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825362|emb|CAN62273.1| hypothetical protein VITISV_012435 [Vitis vinifera]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/388 (72%), Positives = 318/388 (81%), Gaps = 30/388 (7%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS ST +VT RR+GIYEP+HQ+STW E+FK+NG PNTSA  I E++ +LDNQSEDTSHG
Sbjct: 1   MNSSSTHFVTSRRMGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
           + GP  KY+QEA+KP DK+QRRLAQNREAARKSRLRKKAYVQ+LE+SR+KL+QLEQEL+R
Sbjct: 61  TPGPSDKYDQEATKPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELER 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNS----------AFEMEYGHWLEEQSRQICELRNALQ 170
           ARQQGLY+G G++  H+GFSG VNS          AFEMEYGHW+EEQS QICELR AL 
Sbjct: 121 ARQQGLYIGGGLDAGHLGFSGAVNSAHTKNSAGIAAFEMEYGHWVEEQSSQICELRTALH 180

Query: 171 AHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSE 230
           AHI DVELRILV+  M+HYF LFRMK  AAKADVFY+MSGMWKT AERFF WIGGFRPSE
Sbjct: 181 AHISDVELRILVETAMNHYFNLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSE 240

Query: 231 LLK--------------------VLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDK 270
           LLK                    VLVPQL+PLT+QQ++DVCNLRQSCQQAEDAL+QGM+K
Sbjct: 241 LLKIQLVFLDFVFLTEGEGRLGVVLVPQLDPLTDQQILDVCNLRQSCQQAEDALTQGMEK 300

Query: 271 LQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQA 330
           LQQ LAE VAAGQL E  Y P+  TA++KLEA+VSFV+QADHLRQETLQQM RILT RQA
Sbjct: 301 LQQILAEAVAAGQLGEGSYIPQLATALEKLEAVVSFVNQADHLRQETLQQMVRILTVRQA 360

Query: 331 ARGLLALGEYFLRLRALSSLWANRPREP 358
           ARGLLALGEYF RLRALSSLWA RPREP
Sbjct: 361 ARGLLALGEYFQRLRALSSLWATRPREP 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082477|emb|CBI21482.3| unnamed protein product [Vitis vinifera]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/349 (77%), Positives = 308/349 (88%), Gaps = 3/349 (0%)

Query: 14  LGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEAS 73
           +GIYEP+HQ+STW E+FK+NG PNTSA  I E++ +LDNQSEDTSHG+ GP  KY+QEA+
Sbjct: 1   MGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHGTPGPSDKYDQEAT 60

Query: 74  KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVE 133
           KP DK+QRRLAQNREAARKSRLRKKAYVQ+LE+SR+KL+QLEQEL+RARQQGLY+G G++
Sbjct: 61  KPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELERARQQGLYIGGGLD 120

Query: 134 GVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYF 190
             H+GFSG VNS   AFEMEYGHW+EEQS QICELR AL AHI DVELRILV+  M+HYF
Sbjct: 121 AGHLGFSGAVNSGIAAFEMEYGHWVEEQSSQICELRTALHAHISDVELRILVETAMNHYF 180

Query: 191 ELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDV 250
            LFRMK  AAKADVFY+MSGMWKT AERFF WIGGFRPSELLKVLVPQL+PLT+QQ++DV
Sbjct: 181 NLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSELLKVLVPQLDPLTDQQILDV 240

Query: 251 CNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQA 310
           CNLRQSCQQAEDAL+QGM+KLQQ LAE VAAGQL E  Y P+  TA++KLEA+VSFV+QA
Sbjct: 241 CNLRQSCQQAEDALTQGMEKLQQILAEAVAAGQLGEGSYIPQLATALEKLEAVVSFVNQA 300

Query: 311 DHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT 359
           DHLRQETLQQM RILT RQAARGLLALGEYF RLRALSSLWA RPREP 
Sbjct: 301 DHLRQETLQQMVRILTVRQAARGLLALGEYFQRLRALSSLWATRPREPA 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093812|ref|XP_002310002.1| predicted protein [Populus trichocarpa] gi|222852905|gb|EEE90452.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/372 (73%), Positives = 310/372 (83%), Gaps = 15/372 (4%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTS-----------APIIVEVDTR 49
           MNS STQ+VTP R+GIY+P+HQ+  W ENFKSNGNPNTS           A +I+  DT+
Sbjct: 1   MNSTSTQFVTPGRMGIYDPMHQIGMWGENFKSNGNPNTSTMFIAGNPNASASMIIAPDTK 60

Query: 50  LDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRL 109
           LDNQSEDTS G+ G   KY+QEASKP DK+QRRLAQNREAARKSRLRKKAYVQQLE+SR+
Sbjct: 61  LDNQSEDTSQGTLGHSNKYDQEASKPADKVQRRLAQNREAARKSRLRKKAYVQQLESSRV 120

Query: 110 KLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELR 166
           KL+QLEQELDRARQQGLY+G GV+   +GF G  NS    FEMEY HWLEEQ+R IC++R
Sbjct: 121 KLIQLEQELDRARQQGLYIGGGVDASQLGFGGPTNSGIATFEMEYAHWLEEQNRHICDMR 180

Query: 167 NALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGF 226
            AL AHI DVELRI V++ MSHYFELFR+K TAAKADVFYVMSG+WK+ AERFF WIGGF
Sbjct: 181 TALNAHISDVELRIRVESDMSHYFELFRLKATAAKADVFYVMSGLWKSSAERFFLWIGGF 240

Query: 227 RPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAE 286
           RPSELLK+LVP +EPLTEQQL+DV NLRQSCQQAEDALSQG++KLQQ +AETVAAG+L E
Sbjct: 241 RPSELLKILVPCMEPLTEQQLMDVLNLRQSCQQAEDALSQGLEKLQQNVAETVAAGKLGE 300

Query: 287 VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRA 346
             Y+    TAM+KLEAL  FV QADH+RQETLQQMSRILTTRQAARGLLALGEYF RLRA
Sbjct: 301 ASYSHHMETAMEKLEALARFVQQADHIRQETLQQMSRILTTRQAARGLLALGEYFQRLRA 360

Query: 347 LSSLWANRPREP 358
           LSSLWA  PREP
Sbjct: 361 LSSLWAT-PREP 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807762|ref|NP_001241919.1| uncharacterized protein LOC100793353 [Glycine max] gi|255645247|gb|ACU23121.1| unknown [Glycine max]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/362 (74%), Positives = 308/362 (85%), Gaps = 3/362 (0%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS S Q+V+ RR+ +Y+PIHQ+S W E FKSNGN + + P+I E D + D+QSED SHG
Sbjct: 1   MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDETDMKFDSQSEDASHG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
             G   KY+QEA+KP DKIQRRLAQNREAARKSRLRKKAYVQQLE+SRLKL+QLEQEL+R
Sbjct: 61  ILGEPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELER 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELRNALQAHIGDVE 177
           ARQQG+Y+G G++  H+GF+G+VNS    FEMEYGHW+ EQ+RQI ELRNAL AHIGDVE
Sbjct: 121 ARQQGIYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVE 180

Query: 178 LRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVP 237
           LRILVD  MSHY E+FRMK+ AAKADVFY MSGMWKT AERFF WIGGFRPSELLKVL P
Sbjct: 181 LRILVDGMMSHYAEMFRMKSAAAKADVFYAMSGMWKTTAERFFLWIGGFRPSELLKVLGP 240

Query: 238 QLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAM 297
            +EPLTEQQ +D+ NL QSCQQAEDALSQGMDKL+QTLA++VAAGQ  E  Y P+  +AM
Sbjct: 241 LIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQYMEGTYIPQMTSAM 300

Query: 298 DKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           DKL+ALVSFV+QADHLRQETLQQMSRILT RQAAR LLALGEYF RLRALSSLW+NRPRE
Sbjct: 301 DKLKALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPRE 360

Query: 358 PT 359
           P 
Sbjct: 361 PA 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15148922|gb|AAK84888.1|AF402607_1 TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/362 (73%), Positives = 306/362 (84%), Gaps = 3/362 (0%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS S Q+V+ RR+ +Y+PIHQ+S W E FKSNGN + S P+I + D +LD+QSED SHG
Sbjct: 1   MNSASPQFVSARRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDDADMKLDSQSEDASHG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
             G   KY+QEA+KP DKIQRRLAQNREAARKSRLRKKAYVQQLE+SRLKL+QLEQEL+R
Sbjct: 61  ILGAPSKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELER 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELRNALQAHIGDVE 177
           AR QG+Y+G G++  HMGFSG+VNS    FEMEYGHW+ EQ+RQI ELR AL AHIGD+E
Sbjct: 121 ARHQGMYIGGGLDSNHMGFSGSVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIE 180

Query: 178 LRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVP 237
           LRILVD  M+HY E+FRMK+ AAKADVFYVMSGMWKT AERFF WIGGFRPSELLKVL P
Sbjct: 181 LRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGP 240

Query: 238 QLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAM 297
            +EPLTE+Q +D+ NL QSCQQAEDALSQGMDKL+ TLA++VAAGQ  E  Y P+  +AM
Sbjct: 241 LIEPLTEKQRLDIYNLGQSCQQAEDALSQGMDKLRHTLADSVAAGQFMEGTYIPQMTSAM 300

Query: 298 DKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           +KLEALVSFV+QADHLRQ TLQQMSRILT RQAAR LLALGEYF RLRALSSLW+NRPRE
Sbjct: 301 EKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPRE 360

Query: 358 PT 359
           P 
Sbjct: 361 PA 362

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722999|ref|NP_001238287.1| bZIP transcription factor bZIP52 [Glycine max] gi|986969|gb|AAA75414.1| TGACG-motif-binding protein [Glycine max] gi|113367176|gb|ABI34645.1| bZIP transcription factor bZIP52 [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/362 (73%), Positives = 305/362 (84%), Gaps = 3/362 (0%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS S Q+V+PR + +Y+PIHQ+S W E FKSNGN + + P+I E D + D+QSED SHG
Sbjct: 1   MNSASPQFVSPRSMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDEADMKFDSQSEDASHG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
             G   KY+QEASKP DKIQRRLAQNREAARKSRLRKKAYVQQLE+SRLKL+QLEQEL+R
Sbjct: 61  ILGEPNKYDQEASKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELER 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELRNALQAHIGDVE 177
           ARQQG+Y+G G++  H+GF+G+VNS    FEMEYGHW+ EQ+RQI ELRNAL AHIGDVE
Sbjct: 121 ARQQGMYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVE 180

Query: 178 LRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVP 237
           LRILVD  MSHY E+FRMK+ AAKADVFYVMSGMWKT AERF  WIGGF PSELLKVL P
Sbjct: 181 LRILVDGMMSHYAEMFRMKSAAAKADVFYVMSGMWKTTAERFSLWIGGFHPSELLKVLGP 240

Query: 238 QLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAM 297
            +EPLTEQQ +++ NL QSCQQAEDALSQGMDKL+QTLA++VAAGQ  E  Y P+  +AM
Sbjct: 241 LIEPLTEQQRLNIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAM 300

Query: 298 DKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           +KLE LVSFV QADHLRQETL+QMSRILT RQAAR LLALGEYF RLRALSSLW+NRPRE
Sbjct: 301 EKLEDLVSFVKQADHLRQETLEQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPRE 360

Query: 358 PT 359
           P 
Sbjct: 361 PA 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081214|ref|XP_002306337.1| predicted protein [Populus trichocarpa] gi|222855786|gb|EEE93333.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/361 (73%), Positives = 297/361 (82%), Gaps = 3/361 (0%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
           MNS STQ+VT  R+GIY+P+HQ+  W ENFKSN N +TS   I   DT+LDNQSEDTS G
Sbjct: 1   MNSTSTQFVTSGRMGIYDPMHQIGMWGENFKSNRNTSTSTMFIAAPDTKLDNQSEDTSQG 60

Query: 61  SQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120
           + GP  KY+QEASKP DK+QRRLAQNREAARKSRLRKKAYVQQLE+SR KL+QLEQELDR
Sbjct: 61  TLGPSNKYDQEASKPSDKVQRRLAQNREAARKSRLRKKAYVQQLESSRTKLLQLEQELDR 120

Query: 121 ARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGDVE 177
           ARQQGLY+G GV+   +GF G  NS    FEMEYGHWLE Q+R IC++R AL AHI D E
Sbjct: 121 ARQQGLYIGGGVDTSQLGFGGATNSEIPTFEMEYGHWLEGQNRHICDMRIALNAHISDAE 180

Query: 178 LRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVP 237
           L ILV+ GMSHY ELFRMK TAAKADVFYVMSG+WK+ AERF  WIGGFRPSELLK+L+P
Sbjct: 181 LHILVERGMSHYSELFRMKATAAKADVFYVMSGLWKSSAERFLLWIGGFRPSELLKILLP 240

Query: 238 QLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAM 297
            +EPL+EQQ+++  NLRQSCQQAEDALSQGM+KLQQTLAETVAAGQL E  Y+P   TA 
Sbjct: 241 HIEPLSEQQVVNALNLRQSCQQAEDALSQGMEKLQQTLAETVAAGQLGEASYSPHKETAT 300

Query: 298 DKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
           +K   LV FV QADHLRQETLQQMSRILTT QAARGLLALGEYF RLR LSSLWA RP E
Sbjct: 301 EKRNDLVRFVQQADHLRQETLQQMSRILTTHQAARGLLALGEYFQRLRDLSSLWAIRPCE 360

Query: 358 P 358
           P
Sbjct: 361 P 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463481|ref|XP_003602022.1| Transcription factor TGA1 [Medicago truncatula] gi|355491070|gb|AES72273.1| Transcription factor TGA1 [Medicago truncatula]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/363 (71%), Positives = 306/363 (84%), Gaps = 4/363 (1%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDN-QSEDTSH 59
           MNSPS Q+V+ RR+ +Y+PIHQ++ W E FKSNGN + S P+I E D + D+ QSED SH
Sbjct: 1   MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEADLKFDSSQSEDASH 60

Query: 60  GSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119
           G  G   KYEQEA++P DKIQRRLAQNREAARKSRLRKKAYVQQLE+SRLKLVQLEQEL+
Sbjct: 61  GMLGTSNKYEQEANRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELE 120

Query: 120 RARQQGLYVGSGVEGVHMGFSGTVN---SAFEMEYGHWLEEQSRQICELRNALQAHIGDV 176
           R RQQG+Y+G G++  +M F+G VN   +AFEMEYGHW++EQ+RQI E+RNAL +HI D+
Sbjct: 121 RVRQQGMYMGGGLDSNNMCFAGPVNPGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDI 180

Query: 177 ELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLV 236
           ELR+LVD  M+HY E++RMK+ AAK DVFYVMSGMWKT AERFF WIGGFRPSELLK+L 
Sbjct: 181 ELRMLVDGMMNHYAEIYRMKSAAAKTDVFYVMSGMWKTTAERFFLWIGGFRPSELLKILG 240

Query: 237 PQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTA 296
           P +EPLTEQQ +D+ NL QSCQQAEDALSQGM+KL+QTLA++VAAGQ  E  Y P+  TA
Sbjct: 241 PMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATA 300

Query: 297 MDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPR 356
           M+KLEALVSFV+QADHLRQETLQQMSR LT RQ+AR LLALGEYF RLRALSSLW+NRPR
Sbjct: 301 MEKLEALVSFVNQADHLRQETLQQMSRTLTIRQSARCLLALGEYFQRLRALSSLWSNRPR 360

Query: 357 EPT 359
           EP 
Sbjct: 361 EPA 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361256|gb|ABN09200.1| TGA transcription factor 1 [Populus tremula x Populus alba]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/372 (71%), Positives = 300/372 (80%), Gaps = 14/372 (3%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSN-----------GNPNTSAPIIVEVDTR 49
           MNS STQ+VT  R GIY+P+HQ+  W ENFKSN            NPN SA II+  D++
Sbjct: 1   MNSTSTQFVTSGRTGIYDPMHQIGMWGENFKSNRNTSTSTMFIADNPNPSASIIIAPDSK 60

Query: 50  LDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRL 109
           LD+QSE TSHG+ G   KY+QEASKP DK+QRRLAQNREAARKSRLRKKAYVQQLE+SR 
Sbjct: 61  LDDQSEGTSHGTLGASNKYDQEASKPSDKVQRRLAQNREAARKSRLRKKAYVQQLESSRT 120

Query: 110 KLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSA---FEMEYGHWLEEQSRQICELR 166
           KLVQLEQELDRARQQGLY+G GV+   +GF G  NS    FEMEYGHWLEEQ+R IC+++
Sbjct: 121 KLVQLEQELDRARQQGLYIGGGVDTSQLGFGGATNSGIPPFEMEYGHWLEEQNRHICDMK 180

Query: 167 NALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGF 226
            AL AHI D EL  LV++ MSHY ELFR+K TAA+ADVFYVMSG+WK+ AERF  WIGGF
Sbjct: 181 IALDAHISDAELHRLVESDMSHYSELFRIKATAAEADVFYVMSGLWKSSAERFLLWIGGF 240

Query: 227 RPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAE 286
           RPSELLK+L+P +EPL+EQQ+++  NLRQSCQQAEDALSQGM+KLQQTLAETVAAGQL E
Sbjct: 241 RPSELLKILLPHIEPLSEQQVMNALNLRQSCQQAEDALSQGMEKLQQTLAETVAAGQLGE 300

Query: 287 VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRA 346
             Y+    TAM KL+ LV FV QADHLRQETLQQMSRILTTRQAARGLLALGEYF RLR 
Sbjct: 301 ASYSHHKETAMAKLKDLVRFVLQADHLRQETLQQMSRILTTRQAARGLLALGEYFQRLRY 360

Query: 347 LSSLWANRPREP 358
           LSSLWA RP EP
Sbjct: 361 LSSLWATRPCEP 372

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2171820	368	TGA1 "AT5G65210" [Arabidopsis	1.0	0.975	0.717	1.2e-134
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	1.0	0.986	0.703	4.4e-132
TAIR|locus:2029366	368	TGA7 "AT1G77920" [Arabidopsis	0.972	0.948	0.575	1.1e-103
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.927	0.867	0.618	1.8e-101
UNIPROTKB|Q9SQK1	325	TGA2.2 "BZIP transcription fac	0.874	0.966	0.584	5.9e-89
TAIR|locus:2169394	330	AHBP-1B "AT5G06950" [Arabidops	0.871	0.948	0.566	1.4e-87
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.891	0.969	0.562	1.3e-86
TAIR|locus:2082234	355	TGA6 "AT3G12250" [Arabidopsis	0.799	0.808	0.597	2.4e-85
TAIR|locus:2026890	452	PAN "AT1G68640" [Arabidopsis t	0.922	0.732	0.518	1.9e-83
TAIR|locus:2199968	481	TGA9 "AT1G08320" [Arabidopsis	0.782	0.584	0.562	2.6e-79

TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 264/368 (71%), Positives = 303/368 (82%)

Query:     1 MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSN---GNPNTSAPIIVEVDTRLDNQ-SED 56
             MNS ST +V PRR+GIYEP+HQ   W E+FKSN   G  NT   II+  + +LDN  SED
Sbjct:     1 MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED 60

Query:    57 TSHGSQGPFCKYEQEAS--KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQL 114
             TSHG+ G    ++QEAS  +  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL+QL
Sbjct:    61 TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL 120

Query:   115 EQELDRARQQGLYVGSGVEGVHMGFSGTVN---SAFEMEYGHWLEEQSRQICELRNALQA 171
             EQELDRARQQG YVG+G++   +GFS T+N   +AFEMEYGHW+EEQ+RQICELR  L  
Sbjct:   121 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG 180

Query:   172 HIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSEL 231
             HI D+ELR LV+  M HYFELFRMK++AAKADVF+VMSGMW+T AERFF WIGGFRPS+L
Sbjct:   181 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL 240

Query:   232 LKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNP 291
             LKVL+P  + LT+QQL+DVCNL+QSCQQAEDAL+QGM+KLQ TLA+ VAAGQL E  Y P
Sbjct:   241 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP 300

Query:   292 RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLW 351
             +  +AMD+LEALVSFV+QADHLR ETLQQM RILTTRQAARGLLALGEYF RLRALSS W
Sbjct:   301 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW 360

Query:   352 ANRPREPT 359
             A R REPT
Sbjct:   361 ATRHREPT 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 256/364 (70%), Positives = 298/364 (81%)

Query:     1 MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHG 60
             MN+ ST +V PRR  +YEP++Q+  W E+FK+NG+  T   II+  + + D+ SEDTSHG
Sbjct:     1 MNTTSTHFVPPRRFEVYEPLNQIGMWEESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSHG 60

Query:    61 SQGPFCKYEQEAS--KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQEL 118
             ++G   K++QEAS  +  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL+ LEQEL
Sbjct:    61 TEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQEL 120

Query:   119 DRARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGD 175
             DRARQQG YVG+GV+   + FS  ++S   AFEMEYGHW+EEQ+RQICELR  L   + D
Sbjct:   121 DRARQQGFYVGNGVDTNALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSD 180

Query:   176 VELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVL 235
             +ELR LV+  M HYF+LFRMK+ AAK DVFYVMSGMWKT AERFF WIGGFRPSELLKVL
Sbjct:   181 IELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240

Query:   236 VPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGT 295
             +P  +PLT+QQL+DVCNLRQSCQQAEDALSQGM+KLQ TLAE+VAAG+L E  Y P+   
Sbjct:   241 LPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTC 300

Query:   296 AMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRP 355
             AM++LEALVSFV+QADHLR ETLQQM RILTTRQAARGLLALGEYF RLRALSS WA R 
Sbjct:   301 AMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQ 360

Query:   356 REPT 359
             REPT
Sbjct:   361 REPT 364

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 217/377 (57%), Positives = 282/377 (74%)

Query:     1 MNSPS-TQYVTPRRLGIYEPIHQMSTWVENFKSNGN---PNTSAPIIVEVDTRLDNQSE- 55
             M+S S TQ  + R +GIYEP  Q+  W   FKS+ N   PNT+   I++VD R+D+ +  
Sbjct:     2 MSSSSPTQLASLRDMGIYEPFQQIVGWGNVFKSDINDHSPNTATSSIIQVDPRIDDHNNN 61

Query:    56 -----DTSHG---SQGPFCKYEQEAS-KPFDKIQRRLAQNREAARKSRLRKKAYVQQLET 106
                  D+SH    ++ P     Q+   +  DK++RRLAQNREAARKSRLRKKAYVQQLE 
Sbjct:    62 IKINYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLEE 121

Query:   107 SRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNS---AFEMEYGHWLEEQSRQIC 163
             SRLKL QLEQEL++ +QQG          H+G SG++N+   +FEMEY HWL+EQSR++ 
Sbjct:   122 SRLKLSQLEQELEKVKQQG----------HLGPSGSINTGIASFEMEYSHWLQEQSRRVS 171

Query:   164 ELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWI 223
             ELR ALQ+HI D+EL++LV++ ++HY  LF+MK+ AAKADVFY++SGMW+T  ERFF WI
Sbjct:   172 ELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWI 231

Query:   224 GGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQ 283
             GGFRPSELL V++P L+PLT+QQ+++V NL+QS QQAEDALSQG+DKLQQ+LAE++    
Sbjct:   232 GGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDA 291

Query:   284 LAEVGYNP-RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFL 342
             + E  + P     A++ L+AL  FV+QADHLRQ+TLQQM++ILTTRQ+ARGLLALGEY  
Sbjct:   292 VIESTHYPTHMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLH 351

Query:   343 RLRALSSLWANRPREPT 359
             RLRALSSLWA RP+EPT
Sbjct:   352 RLRALSSLWAARPQEPT 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 214/346 (61%), Positives = 265/346 (76%)

Query:    27 VENFKSNGNPNTSAPIIVEVDTRLD----NQSEDTSHGSQG----PFCKYEQEASKPFDK 78
             + N  SN N N S+   +EVD R +    N+   TS  +      P    +Q+  +  DK
Sbjct:    39 INNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDK 98

Query:    79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMG 138
             ++RRLAQNREAARKSRLRKKA+VQQLE SRLKL QLEQEL RARQQGL V +  +  ++G
Sbjct:    99 MKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYLG 158

Query:   139 FSGTVNS---AFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRM 195
              +G +NS   AFEMEY HWLEEQ+R++ E+R ALQAHIGD+EL++LVD+ ++HY  LFRM
Sbjct:   159 PAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLFRM 218

Query:   196 KTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQ 255
             K  AAKADVF++MSGMW+T  ERFF WIGGFRPSELL V++P +EPLT+QQL++V NL+Q
Sbjct:   219 KADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQ 278

Query:   256 SCQQAEDALSQGMDKLQQTLAETVAAG-QLAE-VGYNPRTGTAMDKLEALVSFVSQADHL 313
             S QQAE+ALSQG+DKLQQ L E++A   ++ E V +     +AM+ L+AL SFV+QADHL
Sbjct:   279 SSQQAEEALSQGLDKLQQGLVESIAIQIKVVESVNHGAPMASAMENLQALESFVNQADHL 338

Query:   314 RQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPREPT 359
             RQ+TLQQMS+ILTTRQAARGLLALGEYF RLRALSSLWA RPRE T
Sbjct:   339 RQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPREHT 384

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 193/330 (58%), Positives = 239/330 (72%)

Query:    35 NPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSR 94
             +P+TS     E   R  N  +  +  S G     +Q       K  RRLAQNREAARKSR
Sbjct:     5 SPSTSTDADTEDKNRFLNSQQLGAVASDGSDRTRDQ-------KTLRRLAQNREAARKSR 57

Query:    95 LRKKAYVQQLETSRLKLVQLEQELDRARQQGLYV-GSGVEGVHMGFSGTVNSAFEMEYGH 153
             LRKKAYVQQLE+SR+KL QLEQEL RARQQG+++ GSG +   M  +G +  AF++EY  
Sbjct:    58 LRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISGSGDQSQSMSGNGAL--AFDVEYAR 115

Query:   154 WLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWK 213
             WLEEQ+R+I ELR A+ +H GD ELRI+VD  ++HY ++FR+K  AAK+DVF+++SGMWK
Sbjct:   116 WLEEQNRRINELRGAVNSHAGDGELRIIVDGILAHYDDIFRIKGDAAKSDVFHILSGMWK 175

Query:   214 TPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQ 273
             TPAER F W+GGFR SELLK+L+ QLEPLTEQQL+ + NL+QS QQAEDALSQGM+ LQQ
Sbjct:   176 TPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQQ 235

Query:   274 TLAETVAA--GQLAEVG----YNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTT 327
             +LAET+A   G  +  G    Y  +   AM KL  L  F+ QAD+LRQ+TLQQM RILTT
Sbjct:   236 SLAETLAGSLGPSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTT 295

Query:   328 RQAARGLLALGEYFLRLRALSSLWANRPRE 357
             RQ+AR LLA+ +YF RLRALSSLW  RPRE
Sbjct:   296 RQSARALLAISDYFSRLRALSSLWLARPRE 325

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 188/332 (56%), Positives = 238/332 (71%)

Query:    43 IVEVDTRLD-NQSEDTSH---GSQGPFCKY------EQEASKPFDKIQRRLAQNREAARK 92
             + +   R D +  +DT H   GS+G           ++   K   K  RRLAQNREAARK
Sbjct:     1 MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARK 60

Query:    93 SRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYV-GSGVEGVHMGFSGTVNSAFEMEY 151
             SRLRKKAYVQQLE SRLKL QLEQEL RARQQG+++ G+G +    G +G +  AF+ E+
Sbjct:    61 SRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGAL--AFDAEH 118

Query:   152 GHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGM 211
               WLEE+++Q+ ELR+AL AH GD ELRI+VD  M+HY ELFR+K+ AAK DVF+++SGM
Sbjct:   119 SRWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGM 178

Query:   212 WKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKL 271
             WKTPAER F W+GGFR SELLK+L  QLEP+TE+QL+ + NL+Q+ QQAEDALSQGM+ L
Sbjct:   179 WKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESL 238

Query:   272 QQTLAETVAAGQLAE------VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRIL 325
             QQ+LA+T+++G L          Y  +   AM KL  L  F+ QAD+LR +TLQQM R+L
Sbjct:   239 QQSLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVL 298

Query:   326 TTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
             TTRQ+AR LLA+ +YF RLRALSSLW  RPRE
Sbjct:   299 TTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 185/329 (56%), Positives = 232/329 (70%)

Query:    35 NPNTSAPIIVEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSR 94
             +P TS  +  + DT  +N   D  H   G     ++  SK   K  RRLAQNREAARKSR
Sbjct:     5 SPRTS--VSTDGDTDHNNLMFDEGHLGIGASDSSDRSKSKMDQKTLRRLAQNREAARKSR 62

Query:    95 LRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHW 154
             LRKKAYVQQLE SRLKL QLEQEL RARQQG+++ S  +  H   +G    AF++EY  W
Sbjct:    63 LRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAH-STAGDGAMAFDVEYRRW 121

Query:   155 LEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKT 214
              E+++RQ+ EL +A+ +H  D ELRI+VD  ++HY EL+R+K  AAK+DVF+++SGMWKT
Sbjct:   122 QEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSGMWKT 181

Query:   215 PAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQT 274
             PAER F W+GGFR SELLK++  QLEPLTEQQ +D+ NL+QS QQAEDALSQGMD LQQ+
Sbjct:   182 PAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAEDALSQGMDNLQQS 241

Query:   275 LAETVAAGQLAE------VGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTR 328
             LA+T+++G L          Y  +   AM KL  L  F+ QAD+LR +T QQM R+LTTR
Sbjct:   242 LADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTYQQMVRLLTTR 301

Query:   329 QAARGLLALGEYFLRLRALSSLWANRPRE 357
             Q+AR LLA+  Y LRLRALSSLW  RPRE
Sbjct:   302 QSARALLAVHNYTLRLRALSSLWLARPRE 330

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 177/296 (59%), Positives = 223/296 (75%)

Query:    69 EQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYV 128
             ++   K   K  RRLAQNREAARKSRLRKKAYVQQLE SRLKL QLEQEL RARQQG+++
Sbjct:    62 DRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFI 121

Query:   129 GSGVEGVHM-GFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMS 187
              S  +  H  G +G +  AF+ E+  WLEE++RQ+ ELR+AL AH GD ELRI+VD  M+
Sbjct:   122 SSSGDQAHSTGGNGAL--AFDAEHSRWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMA 179

Query:   188 HYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQL 247
             HY ELFR+K+ AAK DVF+++SGMWKTPAER F W+GGFR SELLK+L  QLEP+TE+Q+
Sbjct:   180 HYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQV 239

Query:   248 IDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAE------VGYNPRTGTAMDKLE 301
             + + +L+Q+ QQAEDALSQGM+ LQQ+LA+T+++G L          Y  +   AM +L 
Sbjct:   240 MGINSLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSDNVASYMGQMAMAMGQLG 299

Query:   302 ALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
              L  F+ QAD+LR +TLQQM R+LTTRQ+AR LLA+ +Y  RLRALSSLW  RPRE
Sbjct:   300 TLEGFIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE 355

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2026890 PAN "AT1G68640" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 179/345 (51%), Positives = 232/345 (67%)

Query:    24 STWVENFKSNGNPNTSAPIIVEVDTRLDNQSEDTSHGSQGPF----CKYEQEASKPFDKI 79
             S+W ++  +  + +       ++DT  D++++  + G QG      C  +        + 
Sbjct:   111 SSWCDSVSAMADNSQHTDTSTDIDT--DDKTQ-LNGGHQGMLLATNCSDQSNVKSSDQRT 167

Query:    80 QRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGF 139
              RRLAQNREAARKSRLRKKAYVQQLE SR++L QLE+EL RARQQG  V  GV   H   
Sbjct:   168 LRRLAQNREAARKSRLRKKAYVQQLENSRIRLAQLEEELKRARQQGSLVERGVSADHTHL 227

Query:   140 S-GTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTT 198
             + G    +FE+EY  W EE  R I +LR+ + + +GD +LR+LVDA MSHY E+FR+K  
Sbjct:   228 AAGNGVFSFELEYTRWKEEHQRMINDLRSGVNSQLGDNDLRVLVDAVMSHYDEIFRLKGI 287

Query:   199 AAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQ 258
               K DVF+++SGMWKTPAERFF W+GGFR SELLK+L   ++PLT+QQLI +CNL+QS Q
Sbjct:   288 GTKVDVFHMLSGMWKTPAERFFMWLGGFRSSELLKILGNHVDPLTDQQLIGICNLQQSSQ 347

Query:   259 QAEDALSQGMDKLQQTLAETVAAGQL-----AEVG-YNPRTGTAMDKLEALVSFVSQADH 312
             QAEDALSQGM+ LQQ+L ET+++  +     A V  Y      AM KL  L +F+ QAD 
Sbjct:   348 QAEDALSQGMEALQQSLLETLSSASMGPNSSANVADYMGHMAMAMGKLGTLENFLRQADL 407

Query:   313 LRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
             LRQ+TLQQ+ RILTTRQAAR  L + +Y  RLRALSSLW  RPR+
Sbjct:   408 LRQQTLQQLHRILTTRQAARAFLVIHDYISRLRALSSLWLARPRD 452

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2199968 TGA9 "AT1G08320" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 162/288 (56%), Positives = 218/288 (75%)

Query:    72 ASKPFD-KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGS 130
             + K  D K  RRLAQNREAARKSRLRKKAYVQQLE+SR+KL QLEQEL RAR QGL++G 
Sbjct:   171 SGKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGLFMGG 230

Query:   131 -GVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHY 189
              G  G ++  SG   + F+MEYG WLE+ +R + E+R  LQAH+ D +LR++VD  ++H+
Sbjct:   231 CGPPGPNIT-SGA--AIFDMEYGRWLEDDNRHMSEIRTGLQAHLSDNDLRLIVDGYIAHF 287

Query:   190 FELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQLEPLTEQQLID 249
              E+FR+K  AAKADVF+++ G W +PAER F W+ GFRPS+L+K+LV Q++ LTEQQL+ 
Sbjct:   288 DEIFRLKAVAAKADVFHLIIGTWMSPAERCFIWMAGFRPSDLIKILVSQMDLLTEQQLMG 347

Query:   250 VCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQ 309
             + +L+ S QQAE+ALSQG+++LQQ+L +T+AA  + + G   +   A+ K+  L  F+ Q
Sbjct:   348 IYSLQHSSQQAEEALSQGLEQLQQSLIDTLAASPVID-GMQ-QMAVALGKISNLEGFIRQ 405

Query:   310 ADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRALSSLWANRPRE 357
             AD+LRQ+T+ Q+ RILT RQAAR  L +GEY+ RLRALSSLW +RPRE
Sbjct:   406 ADNLRQQTVHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWLSRPRE 453

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14232	TGA1A_TOBAC	No assigned EC number	0.6703	0.9582	0.9582	N/A	no
Q39237	TGA1_ARATH	No assigned EC number	0.7173	1.0	0.9755	yes	no
Q39162	TGA4_ARATH	No assigned EC number	0.7032	1.0	0.9862	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam14144	79	pfam14144, DOG1, Seed dormancy control	9e-45
smart00338	65	smart00338, BRLZ, basic region leucin zipper	5e-09
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	7e-08
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	6e-05
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-04

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score =  148 bits (375), Expect = 9e-45
 Identities = 52/79 (65%), Positives = 61/79 (77%)

Query: 160 RQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERF 219
           R + ELR AL AH  D ELR LVD  ++HY E FR+K+ AAKADVF+++SGMWKTPAER 
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERC 60

Query: 220 FFWIGGFRPSELLKVLVPQ 238
           F WIGGFRPSELLK+L   
Sbjct: 61  FLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 74  KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           +  +K +RR  +NREAAR+SR RKKA +++LE    K+ QLE E +R +++
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLKKE 48

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 77  DKIQRRLAQNREAARKSRLRKKAYVQQLET 106
            K +RR  +NREAAR+SRLRKKAY+++LE 
Sbjct: 4   LKRERRRQKNREAARRSRLRKKAYIEELEE 33

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 77  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLV-----QLEQELDRARQQ 124
           D   R+ A+NREAAR+SR RK   ++QLE  +++ +      LE E+DR ++ 
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLE-DKVEELTSENSDLEDEVDRLKKA 52

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 77  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           +   RR  +N EAAR+SR +KK   ++LE    ++ +LE+E  + RQ+
Sbjct: 4   EYRDRRR-RNNEAARRSREKKKQREEELEE---RVKELEEENAQLRQK 47

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
PF14144	80	DOG1: Seed dormancy control	100.0
smart00338	65	BRLZ basic region leucin zipper.	98.7
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	98.62
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.58
KOG3584	348	consensus cAMP response element binding protein an	97.48
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.58
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	96.58
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	96.58
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	96.19
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	96.11
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	94.34
PRK10455	161	periplasmic protein; Reviewed	94.33
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	92.46
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	92.37
KOG0837	279	consensus Transcriptional activator of the JUN fam	91.93
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	91.3
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	89.64
KOG3119	269	consensus Basic region leucine zipper transcriptio	80.19

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=4.7e-34  Score=229.21  Aligned_cols=79  Identities=62%  Similarity=0.964  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhcCC-CchHHHHHHHHHHhhHHHHHHHHHHhhhcCcchhccCCCCChhhhHHHhhcCCCchhhHHhhccc
Q 018238          160 RQICELRNALQAHI-GDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQ  238 (359)
Q Consensus       160 r~l~eLR~AL~s~~-~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~  238 (359)
                      |++.|||+|++++. +|.+|+.|||++|+||++||++|+.+|++|||++|+|+|+||+||||+||||||||++||||+++
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~   80 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ   80 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            57899999999998 89999999999999999999999999999999999999999999999999999999999999874

>smart00338 BRLZ basic region leucin zipper

Probab=98.70  E-value=4.5e-08  Score=75.08  Aligned_cols=45  Identities=51%  Similarity=0.626  Sum_probs=38.8

Q ss_pred             cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238           75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR  122 (359)
Q Consensus        75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar  122 (359)
                      .|+|-.||+.+||+||++||.|||.|++.||.   ++..|+.|....+
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~~L~   46 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLK   46 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            47899999999999999999999999999999   7777766666544

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=98.62  E-value=8.4e-08  Score=73.43  Aligned_cols=44  Identities=50%  Similarity=0.698  Sum_probs=37.3

Q ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238           76 FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR  122 (359)
Q Consensus        76 ~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar  122 (359)
                      ..+-.+|+.+||+|||+||.|||+|+++||.   ++..|+.|....+
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~   46 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK   46 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence            3567899999999999999999999999999   8888877776554

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.58  E-value=2e-07  Score=69.46  Aligned_cols=47  Identities=47%  Similarity=0.603  Sum_probs=39.9

Q ss_pred             CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018238           74 KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ  124 (359)
Q Consensus        74 ~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~q  124 (359)
                      +.+++..+|. +||+||++||.|||.|++.||.   ++.+|+.|....+++
T Consensus         1 ~~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~~~   47 (54)
T PF07716_consen    1 KDEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLRQE   47 (54)
T ss_dssp             TCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            3577889999 9999999999999999999999   777777777665543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=97.48  E-value=0.00035  Score=68.61  Aligned_cols=38  Identities=47%  Similarity=0.627  Sum_probs=33.1

Q ss_pred             cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238           75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLE  115 (359)
Q Consensus        75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qle  115 (359)
                      ..-|-.=||-+||||||.+|-.||-||.-||+   |++=||
T Consensus       288 ~trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T KOG3584|consen  288 ATRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence            34567779999999999999999999999999   776665

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.036  Score=50.38  Aligned_cols=107  Identities=26%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             hhHHHhhcCCCchh---hHHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhH
Q 018238          217 ERFFFWIGGFRPSE---LLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRT  293 (359)
Q Consensus       217 Er~FLWiGGfRPS~---llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm  293 (359)
                      ... +|.|+|-|=-   .++.|     +||++|..+|..+...-+   .++.+-+..-...+-+.+.++..+.       
T Consensus        36 ~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~-------   99 (160)
T COG3678          36 ADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE-------   99 (160)
T ss_pred             ccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH-------
Confidence            444 5777766653   34444     899999999998877666   4444444444445555554333332       


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018238          294 GTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGE  339 (359)
Q Consensus       294 ~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl~e  339 (359)
                      +.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus       100 aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~  145 (160)
T COG3678         100 AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ  145 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            1222455778888899999999999999999999999776555544

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=96.58  E-value=0.046  Score=44.27  Aligned_cols=84  Identities=25%  Similarity=0.241  Sum_probs=65.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQ  320 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~q  320 (359)
                      +||++|..+|..+.......-..+-+.+......+...+.++++..    ..+..++   +.+...-.+....|.+++.+
T Consensus        41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~---~~~~~~~~~l~~~~~~~~~~  113 (125)
T PF13801_consen   41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALL---EEIREAQAELRQERLEHLLE  113 (125)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999988886554442    2333333   44555556667789999999


Q ss_pred             HHhcCCHHHHH
Q 018238          321 MSRILTTRQAA  331 (359)
Q Consensus       321 l~~ILTp~QAA  331 (359)
                      +..+|||.|=+
T Consensus       114 ~~~~LtpeQR~  124 (125)
T PF13801_consen  114 IRAVLTPEQRA  124 (125)
T ss_dssp             HHHTT-GGGHH
T ss_pred             HHHcCCHHHhC
Confidence            99999999855

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=96.58  E-value=0.0038  Score=65.76  Aligned_cols=47  Identities=34%  Similarity=0.451  Sum_probs=40.1

Q ss_pred             CcchHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018238           74 KPFDKIQ---RRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQ  123 (359)
Q Consensus        74 ~~~~k~~---rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~  123 (359)
                      +.|+|++   .|..+|||.|--||.|||-|++-||+   +|..|++|=+..|.
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~Lk~  323 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQLKK  323 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            4566654   68999999999999999999999999   99999888776553

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=96.19  E-value=0.31  Score=44.62  Aligned_cols=94  Identities=20%  Similarity=0.143  Sum_probs=60.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDA--------LSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADH  312 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEda--------Lsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~  312 (359)
                      +||++|...|..++...+..=.+        ..+.|....+.+.+.+.++++.+.    .+....+++   ..--.+.--
T Consensus        52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDea----avral~~~~---~~~~~e~~v  124 (170)
T PRK12750         52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDEA----AANDLAKQM---VEKQVERRV  124 (170)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH---HHHHHHHHH
Confidence            79999999999998777764333        455666677777777766555432    122221211   111111112


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 018238          313 LRQETLQQMSRILTTRQAARGLLALGEYF  341 (359)
Q Consensus       313 LR~qTL~ql~~ILTp~QAA~fLlAl~ey~  341 (359)
                      -|.++.+++..||||-|=+.|---..+..
T Consensus       125 ~~~~~~~~~~~vLTpEQRak~~e~~~~r~  153 (170)
T PRK12750        125 KMLEKRHQMLSILTPEQKAKFQELQQERM  153 (170)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            36678999999999999999887655543

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=96.11  E-value=0.0047  Score=50.70  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 018238           77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK  110 (359)
Q Consensus        77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~k  110 (359)
                      =|-.||..+||.||++||.||+.++..||.....
T Consensus        29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~   62 (92)
T PF03131_consen   29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQ   62 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778999999999999999999999999994433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=94.34  E-value=0.04  Score=57.37  Aligned_cols=43  Identities=35%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      =|..||...|-+.|--||-|||-||..||.-...-..=.|||+
T Consensus       250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~  292 (472)
T KOG0709|consen  250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQ  292 (472)
T ss_pred             HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHH
Confidence            3667999999999999999999999999992222222244554

>PRK10455 periplasmic protein; Reviewed

Probab=94.33  E-value=0.46  Score=43.18  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             hHHHhhc---CCCchhhHHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCCCChhhH
Q 018238          218 RFFFWIG---GFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALS-QGMDKLQQTLAETVAAGQLAEVGYNPRT  293 (359)
Q Consensus       218 r~FLWiG---GfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~g~~~~qm  293 (359)
                      .+.+|-|   |..+..+|+-|     +||++|...|..|.+..+..-...+ +..+.++    +.+.++++..    ..+
T Consensus        35 ~~~~~~~~~~g~~~~~m~~~L-----~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FDe----aav  101 (161)
T PRK10455         35 KPMMHHKGKFGPHHDMMFKGL-----NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFDK----AKA  101 (161)
T ss_pred             CccccCCCCCCchhhhhhhhC-----CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccCH----HHH
Confidence            4456655   44455555544     8999999999998777665533222 2333333    2233333322    123


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 018238          294 GTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLL  335 (359)
Q Consensus       294 ~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLl  335 (359)
                      ...++++..+   -.+.--.|.++-.+|..||||-|=+.|=-
T Consensus       102 ra~~~k~~~~---~~~~~~~~~~~~~qiy~vLTPEQr~q~~~  140 (161)
T PRK10455        102 EAQITKMEAQ---RKARMLAHMETQNKIYNVLTPEQKKQFNA  140 (161)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3334444332   22222367888999999999999997753

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=92.46  E-value=4.3  Score=37.10  Aligned_cols=100  Identities=18%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQ  320 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~q  320 (359)
                      +||++|...|..+....+.......  .+ .-+.+-+.+.++++.+.    .+...++++..   .-..---.+.++.++
T Consensus        56 ~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDea----Avra~~~kma~---~~~e~~v~~~~~~~q  125 (162)
T PRK12751         56 NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDEA----AVRAQAEKMSQ---NQIERHVEMAKVRNQ  125 (162)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCHH----HHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            8999999999998877776532111  11 22334445555555432    33333444332   111222257789999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q 018238          321 MSRILTTRQAARGLLALGEYFLRLRALSSL  350 (359)
Q Consensus       321 l~~ILTp~QAA~fLlAl~ey~~rLR~Lssl  350 (359)
                      +..+|||-|-+.|=--..+....+|.++.+
T Consensus       126 my~lLTPEQra~l~~~~e~r~~~~~~~~~~  155 (162)
T PRK12751        126 MYNLLTPEQKEALNKKHQERIEKLQQKPAA  155 (162)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999998888888888886643

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=92.37  E-value=2.2  Score=39.29  Aligned_cols=99  Identities=21%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHH--HHHHHHHHhHHHHHH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDALSQ-GMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEA--LVSFVSQADHLRQET  317 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~--Le~fl~qAD~LR~qT  317 (359)
                      +||++|...|..|.+.-+.+...++. +++.++    +-+.++.+..    ..+...++|+..  .+.-|     -|.++
T Consensus        50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~FDE----aavra~a~kma~~~~e~~V-----em~k~  116 (166)
T PRK10363         50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENFDE----NAVRAQAEKMAQEQVARQV-----EMAKV  116 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCCCH----HHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            89999999999999888766554432 344444    3333333332    233333344432  22222     35677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Q 018238          318 LQQMSRILTTRQAARGLLALGEYFLRLRALSSLWA  352 (359)
Q Consensus       318 L~ql~~ILTp~QAA~fLlAl~ey~~rLR~Lsslw~  352 (359)
                      -++|..||||-|-+.|=--.-+....+|.++.+=.
T Consensus       117 ~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~q~  151 (166)
T PRK10363        117 RNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQK  151 (166)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            88999999999999996666666667777664433

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=91.93  E-value=0.24  Score=48.46  Aligned_cols=29  Identities=45%  Similarity=0.597  Sum_probs=24.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018238           78 KIQRRLAQNREAARKSRLRKKAYVQQLET  106 (359)
Q Consensus        78 k~~rrlaqnreaArksrlrkkayvqqLE~  106 (359)
                      |..|+=+.|||||+|||.||---|-+||.
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEd  234 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLED  234 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            45577788999999999999877777776

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=91.30  E-value=1.3  Score=35.09  Aligned_cols=83  Identities=16%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHH
Q 018238          237 PQLEPLTEQQLIDVCNLRQSCQQAEDAL---SQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHL  313 (359)
Q Consensus       237 ~~LepLTeqQl~~I~~LqqstqqaEdaL---sq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~L  313 (359)
                      ..| +||++|...|..|....+..-..+   .+.+.++..             +++...-..++.+++.+...-.+.-..
T Consensus        11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (100)
T PF07813_consen   11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-------------PSFDEAAPEALAAMAEMMELRAEMMEE   76 (100)
T ss_dssp             TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-------------SS--HHHHHHHH--HHCHHHHHHHHHH
T ss_pred             hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-------------ccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            445 699999999999988887776666   222222222             011001111122223444444455556


Q ss_pred             HHHHHHHHHhcCCHHHHHHH
Q 018238          314 RQETLQQMSRILTTRQAARG  333 (359)
Q Consensus       314 R~qTL~ql~~ILTp~QAA~f  333 (359)
                      |..+...+..||||-|=+.|
T Consensus        77 ~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   77 RAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             HHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHH
Confidence            77889999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=89.64  E-value=0.82  Score=44.47  Aligned_cols=44  Identities=36%  Similarity=0.417  Sum_probs=36.1

Q ss_pred             cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018238           75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRA  121 (359)
Q Consensus        75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ra  121 (359)
                      ...|++||=-+||=||..+|=||||-...+|-   ....|+.|-++.
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een~~L  109 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEENEIL  109 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            46799999999999999999999999999988   555555554443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=80.19  E-value=4.4  Score=39.55  Aligned_cols=46  Identities=33%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238           74 KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR  122 (359)
Q Consensus        74 ~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar  122 (359)
                      +.+++-..|...|=+|+||||...|.=-  .|. ..|...||.|.+..|
T Consensus       190 ~~~~~y~err~rNN~A~~kSR~~~k~~~--~e~-~~r~~~leken~~lr  235 (269)
T KOG3119|consen  190 KKDPEYKERRRRNNEAVRKSRDKRKQKE--DEM-AHRVAELEKENEALR  235 (269)
T ss_pred             cCCHHHHHHHHhhhHHHHHhhhhHHHHH--HHH-HHHHHHHHHHHHHHH
Confidence            4577888899999999999998766433  222 335556665555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	5e-08
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	4e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-06
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-05
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	4e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	2e-04
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	5e-04
2wt7_B	90	Transcription factor MAFB; transcription, transcri	6e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           K + RL +NREAAR+SR +KK YV+ LE    ++  LE +     ++
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL----VQLEQELDRARQQ 124
           K +R+  +NR AA KSR RK   + +LE     L     +L    +  R+Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 65/435 (14%), Positives = 114/435 (26%), Gaps = 165/435 (37%)

Query: 1   MNSPSTQYVTPRRLGIYEPIHQMSTWVENFKSNG-NPNTS---APIIVE-----VDTRLD 51
           + S      T R         +    V+ F       N     +PI  E     + TR+ 
Sbjct: 55  IMSKDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 52  NQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL 111
            +  D  +     F KY     +P+ K+++ L +         LR    V          
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---------LRPAKNV---------- 153

Query: 112 VQLEQELDRARQQGLYVGSGVEGVHMGFSG-TV-------NSAFE--MEYG-HWL----E 156
                               ++G  +  SG T        +   +  M++   WL     
Sbjct: 154 -------------------LIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 157 EQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPA 216
                + E+   L   I D       D   S+     +++  + +A              
Sbjct: 193 NSPETVLEMLQKLLYQI-DPNWTSRSD-HSSNI----KLRIHSIQA-------------- 232

Query: 217 ERFFFWIGGFRPSELLKVLVPQLEPLTEQQLI--DVCNLRQ------SCQ--------QA 260
                         LLK      +P     L+  +V N +       SC+        Q 
Sbjct: 233 ----------ELRRLLK-----SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 261 EDALSQG------MDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKL--EA------LVS- 305
            D LS        +D    TL        L +             L  E        +S 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSI 332

Query: 306 -------FVSQADHLRQETLQQMSRILTTRQAARGLLALG-----EYFLRL--------- 344
                   ++  D+ +     +++ I+        L  L      + F RL         
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 345 --RALSSLWANRPRE 357
               LS +W +  + 
Sbjct: 388 PTILLSLIWFDVIKS 402

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           K ++ L +NR AA +SR ++K +VQ LE    K   L     + + +
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNGQLQSE 44

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 74  KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           +  D    + A+N EAAR+SR RK   ++QLE    K+ +L  +      +
Sbjct: 5   ESSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNYHLENE 52

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 77  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKL----VQLEQELDRARQQ 124
           +K + R  +N+ AA K R R++     L+    +L      L+ E+    ++
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQEL 118
           K  +++ QN+ AA + R +K+A  + L     +L +  + L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 77  DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124
           +   +R AQNR A R  R RK+ +++ LET   ++V L++       +
Sbjct: 7   EPSSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSSTTLE 51

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQ----LEQELDRARQQ 124
           K +RR  +NR  A   R+++    ++LE  + +L Q    L  E    + +
Sbjct: 37  KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLE 87

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLV----QLEQELDRARQQ 124
           K +RR  +NR  A+  R ++      LE  + +L+    QL+QE+ R  ++
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.03
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.6
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	98.35
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	98.27
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	98.26
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.01
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.41
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	97.15
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	96.2
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	96.03
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	95.49
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	95.28
2wt7_B	90	Transcription factor MAFB; transcription, transcri	91.03
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	87.14
3lay_A	175	Zinc resistance-associated protein; salmonella typ	86.02
3o39_A	108	Periplasmic protein related to spheroblast format;	84.26

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.03  E-value=3e-10  Score=84.49  Aligned_cols=44  Identities=43%  Similarity=0.590  Sum_probs=39.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018238           78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ  124 (359)
Q Consensus        78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~q  124 (359)
                      |-++|+..|||+|+.||.|||+||+.||.   ++.+|+.|-...+.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~   44 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE   44 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999   899999998877765

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.60  E-value=5.4e-08  Score=74.20  Aligned_cols=42  Identities=38%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      ++|+..+|-++||||||+||.||++|+..||.   ++.+|+.|-.
T Consensus         6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~eN~   47 (63)
T 2dgc_A            6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNY   47 (63)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            45667788889999999999999999999999   6655554443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=98.35  E-value=6.8e-07  Score=67.44  Aligned_cols=40  Identities=38%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238           78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR  120 (359)
Q Consensus        78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r  120 (359)
                      |..||..+||+||+|||.|||.|++.||.   ++..|+.+-..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~   40 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE   40 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            45789999999999999999999999999   66666555443

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=98.27  E-value=1.8e-06  Score=65.39  Aligned_cols=40  Identities=33%  Similarity=0.372  Sum_probs=33.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238           78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR  120 (359)
Q Consensus        78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r  120 (359)
                      |-.+|+-.||+||+|||.|||.|++.||.   ++.+|+.+-..
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~   41 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSA   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            56789999999999999999999999999   66665555443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=98.26  E-value=1.5e-06  Score=65.29  Aligned_cols=38  Identities=37%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      -.+|+..||+||.|||.|||.|++.||.   ++..|+.+-.
T Consensus         2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~   39 (61)
T 1t2k_D            2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNG   39 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4689999999999999999999999999   5555555443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.01  E-value=5.2e-06  Score=64.60  Aligned_cols=39  Identities=38%  Similarity=0.451  Sum_probs=34.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238           79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR  120 (359)
Q Consensus        79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r  120 (359)
                      ..+|-||||+|+|-.|-||++||..||.   ++.+||.+.+.
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~   47 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS   47 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4688899999999999999999999999   88888876554

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.41  E-value=0.0025  Score=54.09  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             HhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 018238          233 KVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADH  312 (359)
Q Consensus       233 kLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~  312 (359)
                      .+|...| +||++|...|..+...-.....+|.++|......|++.+.++    ..|+.++..|++.+-.      ..-.
T Consensus        13 ~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~----~~~~p~V~aaid~~h~------~mG~   81 (118)
T 2y39_A           13 EILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN----PAWSPEVEAATQEVER------AAGD   81 (118)
T ss_dssp             HHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CSCCHHHHHHHHHHHH------HHHH
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccCHHHHHHHHHHHH------HHHH
Confidence            3444556 899999999999999999999999999999999999988432    2367788888854432      4445


Q ss_pred             HHHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 018238          313 LRQET---LQQMSRILTTRQAARGLLALGEY  340 (359)
Q Consensus       313 LR~qT---L~ql~~ILTp~QAA~fLlAl~ey  340 (359)
                      |+..|   +-.|..||||-|+..|=-.+.+-
T Consensus        82 LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a  112 (118)
T 2y39_A           82 LQRATLVHVFEMRAGLKPEHRPAYDRVLIDA  112 (118)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88889   66777999999999997666553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=97.15  E-value=0.00045  Score=52.30  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      -.|+.-+||.||+++|.|||.+++.||.   ++.+|+++-.
T Consensus         3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~   40 (63)
T 1ci6_A            3 KLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNE   40 (63)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             hHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4678889999999999999999999999   5655555544

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=96.20  E-value=0.0014  Score=54.87  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=35.7

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238           77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR  122 (359)
Q Consensus        77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar  122 (359)
                      =|-.||--+||++|++||.||.+.+..||.   .+.+|.+|+++.+
T Consensus        36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~   78 (107)
T 3a5t_A           36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLA   78 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            377899999999999999999999999998   6666666655443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=96.03  E-value=0.02  Score=45.21  Aligned_cols=45  Identities=29%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             cCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           72 ASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        72 ~~~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      ..+.|++-..|-..|.+||+|||-.+|.-.+.++.   +..+|++|=.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~---r~~~L~~eN~   53 (78)
T 1gu4_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENE   53 (78)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            34557788888999999999999999999888866   4444444433

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=95.49  E-value=0.042  Score=44.23  Aligned_cols=45  Identities=29%  Similarity=0.293  Sum_probs=33.0

Q ss_pred             cCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238           72 ASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD  119 (359)
Q Consensus        72 ~~~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~  119 (359)
                      ..+.|++-..|-..|.+||||||-.+|.=.+.++.   +..+||+|=.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~---r~~~Le~EN~   53 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENE   53 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            34557888888899999999999999988777765   4444444433

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=95.28  E-value=0.097  Score=45.56  Aligned_cols=97  Identities=21%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDALSQ-GMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ  319 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~  319 (359)
                      +||++|..+|..|....+.+...+.. .++    .+-+.+.++.+..    ..+..-+   +.+...-.+.--.|.++-.
T Consensus        45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~fDe----aa~ral~---~~~~~~~~e~~v~r~k~~~  113 (145)
T 3itf_A           45 SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENFDE----NAVRAQA---EKMANEQIARQVEMAKVRN  113 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            69999999999999888776554432 222    2333332222221    1222222   3333333444446788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q 018238          320 QMSRILTTRQAARGLLALGEYFLRLRALS  348 (359)
Q Consensus       320 ql~~ILTp~QAA~fLlAl~ey~~rLR~Ls  348 (359)
                      +|..||||-|-+.|---+.+-...++.++
T Consensus       114 qiy~vLTPEQk~ql~e~~~~r~~~~~~~~  142 (145)
T 3itf_A          114 QMYRLLTPEQQAVLNEKHQQRMEQLRDVT  142 (145)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998877777666666554

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=91.03  E-value=0.61  Score=37.73  Aligned_cols=44  Identities=27%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238           76 FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR  122 (359)
Q Consensus        76 ~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar  122 (359)
                      .=|-.||=-+||-+|.++|-||-.-+..||.   ...+|..|++..+
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~---e~~~L~~e~~~L~   68 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLEN---EKTQLIQQVEQLK   68 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            3467799999999999999999999999998   4455555555443

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=87.14  E-value=0.24  Score=42.43  Aligned_cols=98  Identities=11%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 018238          237 PQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQE  316 (359)
Q Consensus       237 ~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~q  316 (359)
                      ..| +||++|...|..|.+..+..-..   .+....+.+.+.+.++.+.    -..+...+++   +...-.+.--.|.+
T Consensus        30 ~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fD----eaav~al~~~---~~~~~~e~~~~~~~   98 (138)
T 3oeo_A           30 KDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFD----KVKAEAQIAK---MEEQRKANMLAHME   98 (138)
T ss_dssp             CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCC----HHHHHHHHGG---GSHHHHHHHHHHHH
T ss_pred             hcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCC----HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            455 79999999999998877654221   1112223343333322222    1122222222   23333344446788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 018238          317 TLQQMSRILTTRQAARGLLALGEYFLRLR  345 (359)
Q Consensus       317 TL~ql~~ILTp~QAA~fLlAl~ey~~rLR  345 (359)
                      +..+|..||||-|-+.|---+.+-..+++
T Consensus        99 ~~~~~~~vLTPEQr~q~~~~~~kr~~~~~  127 (138)
T 3oeo_A           99 TQNKIYNILTPEQKKQFNANFEKRLTERP  127 (138)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998877766555544

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=86.02  E-value=5.7  Score=35.39  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238          240 EPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ  319 (359)
Q Consensus       240 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~  319 (359)
                      -+||++|..+|..|+++-+..-.+|.+.|...++.|.+-+.++.+..    ..+.....++..|..   +-...|.+.-.
T Consensus        66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~---qL~~~R~k~~~  138 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQ---KLDEQRVKRDV  138 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            37999999999999999999999999999999988877765433321    233333334444433   33345555555


Q ss_pred             HHH
Q 018238          320 QMS  322 (359)
Q Consensus       320 ql~  322 (359)
                      +|.
T Consensus       139 em~  141 (175)
T 3lay_A          139 AMA  141 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=84.26  E-value=1.4  Score=36.37  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238          241 PLTEQQLIDVCNLRQSCQQAEDALS-QGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ  319 (359)
Q Consensus       241 pLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~  319 (359)
                      +||++|...|..|....+..-.... ...+    .+-+.+.++.+..    ..+...++++..   .-.+.--.|.++=.
T Consensus        17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE----aaar~l~~~~~~---~~~e~~v~~~r~~~   85 (108)
T 3o39_A           17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK----AKAEAQIAKMEE---QRKANMLAHMETQN   85 (108)
T ss_dssp             CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH----HHHHHHHHHTHH---HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH----HHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            7999999999999887766533222 1122    2333343333322    122222233322   11222224667788


Q ss_pred             HHHhcCCHHHHHHHH
Q 018238          320 QMSRILTTRQAARGL  334 (359)
Q Consensus       320 ql~~ILTp~QAA~fL  334 (359)
                      +|..||||-|-+.|-
T Consensus        86 qmy~lLTPEQk~q~~  100 (108)
T 3o39_A           86 KIYNILTPEQKKQFN  100 (108)
T ss_dssp             HHHTTSCHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHH
Confidence            999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00