Citrus Sinensis ID: 018253
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| Q42948 | 359 | 4-hydroxy-tetrahydrodipic | N/A | no | 0.952 | 0.952 | 0.834 | 1e-174 | |
| Q9FVC8 | 365 | 4-hydroxy-tetrahydrodipic | yes | no | 0.963 | 0.947 | 0.800 | 1e-168 | |
| Q42800 | 332 | 4-hydroxy-tetrahydrodipic | yes | no | 0.913 | 0.987 | 0.823 | 1e-163 | |
| Q9LZX6 | 365 | 4-hydroxy-tetrahydrodipic | no | no | 0.947 | 0.931 | 0.782 | 1e-162 | |
| P24847 | 377 | 4-hydroxy-tetrahydrodipic | N/A | no | 0.969 | 0.923 | 0.732 | 1e-153 | |
| P26259 | 380 | 4-hydroxy-tetrahydrodipic | N/A | no | 0.910 | 0.860 | 0.764 | 1e-153 | |
| Q39535 | 377 | 4-hydroxy-tetrahydrodipic | N/A | no | 0.969 | 0.923 | 0.713 | 1e-152 | |
| P24846 | 388 | 4-hydroxy-tetrahydrodipic | N/A | no | 0.958 | 0.886 | 0.738 | 1e-152 | |
| B5YKK4 | 291 | 4-hydroxy-tetrahydrodipic | yes | no | 0.754 | 0.931 | 0.354 | 3e-41 | |
| C4L2D2 | 293 | 4-hydroxy-tetrahydrodipic | yes | no | 0.746 | 0.914 | 0.349 | 5e-41 |
| >sp|Q42948|DAPA_TOBAC 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum GN=DHPS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/345 (83%), Positives = 317/345 (91%), Gaps = 3/345 (0%)
Query: 18 SVSCTGKNRK---WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDG 74
S+ G R+ WR P+AA+IP++HLPMRS EVKNRT A+DIKALRLITAIKTPYLPDG
Sbjct: 15 SIEAAGTKRRTTRWRSPRAAVIPSFHLPMRSNEVKNRTFADDIKALRLITAIKTPYLPDG 74
Query: 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 134
RFDLEAYD LVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNT
Sbjct: 75 RFDLEAYDTLVNLQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNT 134
Query: 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRT 194
GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF+SVL MGPTIIYNVPSRT
Sbjct: 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFESVLPMGPTIIYNVPSRT 194
Query: 195 GQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGV 254
GQDIPPRVI TMA+SPNLAGVKECVGNDRVE YT +G+VVWSGNDD+CH +RW++GATGV
Sbjct: 195 GQDIPPRVIQTMAKSPNLAGVKECVGNDRVEQYTSDGVVVWSGNDDECHVSRWDYGATGV 254
Query: 255 ISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRL 314
ISVTSNLVPG+MRELMFGGKNP+LN+KL PL+EWLF EPNPI LNTALAQLGVVRPVFRL
Sbjct: 255 ISVTSNLVPGLMRELMFGGKNPALNSKLMPLMEWLFHEPNPIALNTALAQLGVVRPVFRL 314
Query: 315 PYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
PYVPL + KR EFV +V +IGRENF+GE+DVQ+LDD+DFILV RY
Sbjct: 315 PYVPLTKAKREEFVKIVKEIGRENFIGERDVQILDDNDFILVGRY 359
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Nicotiana tabacum (taxid: 4097) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|Q9FVC8|DAPA2_ARATH 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DHDPS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 590 bits (1522), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/346 (80%), Positives = 309/346 (89%)
Query: 14 CGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPD 73
C + S ++ KW P+AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLPD
Sbjct: 20 CPKLFNSYKRRSSKWVSPKAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPD 79
Query: 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133
GRFDLEAYDDLVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGN
Sbjct: 80 GRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGN 139
Query: 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR 193
TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP R
Sbjct: 140 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGR 199
Query: 194 TGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATG 253
TGQDIPPR I ++Q+PNLAGVKECVGN RVE YT NG+VVWSGNDD+CHD+RW++GATG
Sbjct: 200 TGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGATG 259
Query: 254 VISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFR 313
VISVTSNLVPG+MR+LMF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVFR
Sbjct: 260 VISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFR 319
Query: 314 LPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
LPYVPLP KR EFV LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct: 320 LPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 365
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Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Glycine max GN=DHPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 270/328 (82%), Positives = 299/328 (91%)
Query: 32 QAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVN 91
AA+ PN+HLPMRSFE+KNRTS EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI
Sbjct: 5 SAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQ 64
Query: 92 GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151
GAEG+IVGGTTGEGQLMSW+EHI+LI HTVNCFG +KVIGNTGSNSTREAIHATEQGFA
Sbjct: 65 GAEGVIVGGTTGEGQLMSWEEHIILIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFA 124
Query: 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPN 211
VGMHAALHINPYYGKTSL+G+++HF SVLSMGPTIIYNVP+RTGQDIPP VI T+A+S N
Sbjct: 125 VGMHAALHINPYYGKTSLDGMVAHFRSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESVN 184
Query: 212 LAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF 271
LAGVKECVGNDR++ YT +GIVVWSGNDDQCHDARW +GATGV+SV SNLVPG+MRELMF
Sbjct: 185 LAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVVSVASNLVPGLMRELMF 244
Query: 272 GGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331
GG NP+LN+KL PLI+WLF PNPI LNTALAQLGV+RPVFRLP+VPLP +KR EF NLV
Sbjct: 245 GGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVIRPVFRLPFVPLPVDKRIEFANLV 304
Query: 332 NQIGRENFVGEKDVQVLDDDDFILVDRY 359
+IGRE+FVG K V+VLDDDDF LV RY
Sbjct: 305 KEIGREHFVGNKVVEVLDDDDFFLVSRY 332
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Glycine max (taxid: 3847) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q9LZX6|DAPA1_ARATH 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DHDPS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/340 (78%), Positives = 303/340 (89%)
Query: 20 SCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLE 79
S +N KW P AA++PN+HLPMRS E KNRT+ +DI++LR+ITAIKTPYLPDGRFDL+
Sbjct: 26 SYKRRNAKWVSPIAAVVPNFHLPMRSLEDKNRTNTDDIRSLRVITAIKTPYLPDGRFDLQ 85
Query: 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139
AYDDLVN QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG +KVIGNTGSNST
Sbjct: 86 AYDDLVNTQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGRIKVIGNTGSNST 145
Query: 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIP 199
REAIHATEQGFA+GMH ALHINPYYGKTS+EG+ +HF +VL MGPTIIYNVP RT QDIP
Sbjct: 146 REAIHATEQGFAMGMHGALHINPYYGKTSIEGMNAHFQTVLHMGPTIIYNVPGRTCQDIP 205
Query: 200 PRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTS 259
P+VI ++Q+PN+AGVKECVGN+RVE YT GIVVWSGNDDQCHD+RW+HGATGVISVTS
Sbjct: 206 PQVIFKLSQNPNMAGVKECVGNNRVEEYTEKGIVVWSGNDDQCHDSRWDHGATGVISVTS 265
Query: 260 NLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPL 319
NLVPG+MR+LMF G+N +LN KL PL++WLFQEPNPI +NTALAQLGV RPVFRLPYVPL
Sbjct: 266 NLVPGLMRKLMFEGRNSALNAKLLPLMDWLFQEPNPIGVNTALAQLGVARPVFRLPYVPL 325
Query: 320 PQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
P KR EFV LV +IGRE+FVG++DVQVLDDDDFIL+ RY
Sbjct: 326 PLSKRIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY 365
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Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P24847|DAPA2_WHEAT 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Triticum aestivum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/351 (73%), Positives = 294/351 (83%), Gaps = 3/351 (0%)
Query: 9 LNLSNCGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKT 68
L+ S P++ G+ + AAI + +LPMRS EVKNRTS + IK+LRLITA+KT
Sbjct: 30 LSRSAAAPLASHRVGRGKF---SAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAVKT 86
Query: 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV 128
PYLPDGRFDLEAYD L+N QI GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG ++
Sbjct: 87 PYLPDGRFDLEAYDSLINTQINGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTNI 146
Query: 129 KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIY 188
KVIGNTGSNSTREAIHA+EQGFAVGMHAALH+NPYYGKTS GLISHFD VL MGPTIIY
Sbjct: 147 KVIGNTGSNSTREAIHASEQGFAVGMHAALHVNPYYGKTSTAGLISHFDEVLPMGPTIIY 206
Query: 189 NVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWN 248
NVPSRTGQDIPP VI ++ PN+AGVKECVG++RV+ YT GI +WSGNDD+CHD+RW
Sbjct: 207 NVPSRTGQDIPPAVIEALSTYPNMAGVKECVGHERVKCYTDKGITIWSGNDDECHDSRWK 266
Query: 249 HGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVV 308
+GATGVISVTSNLVPG+MR LMF G+N +LN KL PL++WLF EPNPI LNTALAQLGVV
Sbjct: 267 YGATGVISVTSNLVPGLMRSLMFEGENAALNEKLLPLMKWLFSEPNPIGLNTALAQLGVV 326
Query: 309 RPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
RPVFR PY PL EKR EFV +V IGRENFVG+K+V+VLDDDDF+L+ RY
Sbjct: 327 RPVFRRPYAPLSLEKRTEFVRIVEAIGRENFVGQKEVRVLDDDDFVLISRY 377
|
Triticum aestivum (taxid: 4565) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P26259|DAPA_MAIZE 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Zea mays PE=1 SV=2 | Back alignment and function description |
|---|
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 250/327 (76%), Positives = 286/327 (87%)
Query: 33 AAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG 92
AAI + +LPMRS EVKNRTS +DI LRLITA+KTPYLPDGRFDLEAYD L+NMQI G
Sbjct: 54 AAITLDDYLPMRSTEVKNRTSTDDITRLRLITAVKTPYLPDGRFDLEAYDSLINMQIEGG 113
Query: 93 AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152
AEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG+ +KVIGNTGSNSTREA+HATEQGFAV
Sbjct: 114 AEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGSRIKVIGNTGSNSTREAVHATEQGFAV 173
Query: 153 GMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNL 212
GMHAALHINPYYGKTS EG+ISHF++VL MGPTIIYNVPSR+ QDIPP VI ++ N+
Sbjct: 174 GMHAALHINPYYGKTSAEGMISHFEAVLPMGPTIIYNVPSRSAQDIPPEVILAISGYTNM 233
Query: 213 AGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG 272
AGVKECVG++RV+HY GI +WSGNDD+CHD++W HGATGVISVTSNLVPG+M LM+
Sbjct: 234 AGVKECVGHERVKHYADKGITIWSGNDDECHDSKWKHGATGVISVTSNLVPGLMHSLMYK 293
Query: 273 GKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVN 332
G+N +LN KL PL++WLF +PNPI LNTALAQLGV RPVFRLPYVPLP EKRAEFV +V
Sbjct: 294 GENATLNEKLSPLMKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRAEFVRIVE 353
Query: 333 QIGRENFVGEKDVQVLDDDDFILVDRY 359
IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct: 354 SIGRENFVGQKEARVLDDDDFVLISRY 380
|
Zea mays (taxid: 4577) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q39535|DAPA_COILA 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Coix lachryma-jobi GN=DAPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/353 (71%), Positives = 293/353 (83%), Gaps = 5/353 (1%)
Query: 12 SNCGPVSVSCTGKNRK-----WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAI 66
+ P S S + R+ R +AI + +LPMRS EVKNRTS +DI +LRLITA+
Sbjct: 25 ATASPSSPSVAARPRRPSSGTGRGKVSAITLDDYLPMRSTEVKNRTSTDDITSLRLITAV 84
Query: 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA 126
KTPYLPDGRFDLEAYD L+NMQI GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG+
Sbjct: 85 KTPYLPDGRFDLEAYDSLINMQIEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGS 144
Query: 127 SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI 186
+KVIGNTGSNSTREA+HATEQGFAVGMHAALHINPYYGKTS EG+ISHF+SVL MGPTI
Sbjct: 145 RIKVIGNTGSNSTREAVHATEQGFAVGMHAALHINPYYGKTSTEGMISHFESVLPMGPTI 204
Query: 187 IYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDAR 246
IYNVPSR+ QDIPP VI ++ N+AGVKEC+G++R++HY GI +WSGNDD+CHD+R
Sbjct: 205 IYNVPSRSAQDIPPEVIVAISGYINMAGVKECIGHERIKHYADKGITIWSGNDDECHDSR 264
Query: 247 WNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLG 306
W +GATGVISVTSNLVPG+M LM+ G+N L KL PL++WLF +PNPI LNTALAQLG
Sbjct: 265 WKYGATGVISVTSNLVPGLMHSLMYKGENAVLKEKLLPLMKWLFCQPNPIALNTALAQLG 324
Query: 307 VVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
V RPVFRLPYVPLP EKRAEFV +V IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct: 325 VARPVFRLPYVPLPLEKRAEFVRIVEAIGRENFVGQKETRVLDDDDFVLISRY 377
|
Coix lachryma-jobi (taxid: 4505) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P24846|DAPA1_WHEAT 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Triticum aestivum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/344 (73%), Positives = 289/344 (84%)
Query: 16 PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGR 75
PVS + K + AA+ + +LPMRS EVKNRTS + IK+LRLITA+KTPYLPDGR
Sbjct: 45 PVSGHSASRVSKGKFAVAAVTLDDYLPMRSTEVKNRTSTDGIKSLRLITAVKTPYLPDGR 104
Query: 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135
FDLEAYD L+N QI GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFGA++KVIGNTG
Sbjct: 105 FDLEAYDSLINTQINGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGANIKVIGNTG 164
Query: 136 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTG 195
SNSTREA+HATEQGFAVGMHAALH+NPYYGKTS EGLISHF VL MGPTIIYNVPSRT
Sbjct: 165 SNSTREAVHATEQGFAVGMHAALHVNPYYGKTSTEGLISHFKEVLPMGPTIIYNVPSRTS 224
Query: 196 QDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVI 255
QDIPP VI ++ N+AGVKECVG++RV+ YT GI +WSGNDD+CHD+RW +GATGVI
Sbjct: 225 QDIPPPVIEALSSYSNMAGVKECVGHERVKCYTDKGISIWSGNDDECHDSRWKYGATGVI 284
Query: 256 SVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLP 315
SV SNLVPG+M LMF G+N +LN KL PL++WLF EPNPI LNTALAQLGVVRPVFRLP
Sbjct: 285 SVASNLVPGLMHSLMFEGENAALNEKLLPLMKWLFCEPNPIGLNTALAQLGVVRPVFRLP 344
Query: 316 YVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
Y PLP EKR EFV +V IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct: 345 YTPLPLEKRVEFVRIVEAIGRENFVGQKESRVLDDDDFVLISRY 388
|
Triticum aestivum (taxid: 4565) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dapA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 14/285 (4%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ AI TP+ G+ D +A++ L+ I G G++ GTTGE + ++EH +I TV
Sbjct: 6 MVAIVTPF-KKGKIDEKAFEKLIEWHIKEGTHGIVPCGTTGEASTLDYEEHYKVIEITVK 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182
+ VI TGSNST EAI T++ +G AAL + PYY K + EGL H+ +
Sbjct: 65 VVNKRIPVIAGTGSNSTDEAIMITKKAEKLGADAALLVTPYYNKPTQEGLYRHYKEIADK 124
Query: 183 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 236
P I+YNVP RT +I P+ + +A+ P + G+KE G+ + G+ I V S
Sbjct: 125 TGIPLILYNVPGRTSVNILPQTVARLAEHPRIVGIKEATGDMKQVSELIRLCGDKITVLS 184
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFPLIEWLF 290
G DD + G G ISVT+N+ P M EL + L+ KL PL + +F
Sbjct: 185 G-DDFTNLTLLALGGKGAISVTANICPKDMAELFNAWEKGDIEHARKLHYKLEPLNKAMF 243
Query: 291 QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
E NPIP+ TALA +G ++ FRLP + Q + + ++ G
Sbjct: 244 IETNPIPVKTALAMMGKIKEEFRLPLCEMSQTNKEKLAEVLRSAG 288
|
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|C4L2D2|DAPA_EXISA 4-hydroxy-tetrahydrodipicolinate synthase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dapA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 152/283 (53%), Gaps = 15/283 (5%)
Query: 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC 123
TA+ TP+ +G+ +LEA+ L+ QI G G+++GGTTGEG ++ DE L+ V
Sbjct: 7 TALATPFQENGQLNLEAWAALIEDQIKEGVTGLVIGGTTGEGMTITDDEFETLLVRAVEV 66
Query: 124 FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 183
+I TGSN+T +I T++ +G A+ + PYY K++ GLI+HF ++
Sbjct: 67 ANGRAVIIAGTGSNNTAVSIEKTKRAAELGAEMAMVVTPYYNKSTQAGLIAHFTAIADAS 126
Query: 184 PT--IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWSG 237
P ++YNVPSRTG + P + +A+ P + +KE G+ ++ + G V+ G
Sbjct: 127 PIPLMLYNVPSRTGVALAPETVGELAEHPRITALKEASGDISVMAQMMAHIPEGFTVYCG 186
Query: 238 NDDQCHD-ARWNHGATGVISVTSNLVPG---MMRELMFGGKNPSLNT---KLFPLIEWLF 290
NDDQ W GA GV+SV SN+ PG + E + G + T +L P+I+ LF
Sbjct: 187 NDDQILPYMAW--GAQGVVSVLSNVYPGATVALAEALLAGDLQTARTWQIRLLPVIDELF 244
Query: 291 QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333
E NPIP+ AL G RLP VP+ A+ ++ + Q
Sbjct: 245 AEVNPIPVKAALQARGFEVGAPRLPLVPMSATAEAKLLSAMEQ 287
|
Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) (taxid: 360911) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 255561405 | 367 | dihydrodipicolinate synthase, putative [ | 0.958 | 0.937 | 0.870 | 1e-177 | |
| 224063919 | 365 | predicted protein [Populus trichocarpa] | 0.958 | 0.942 | 0.861 | 1e-176 | |
| 224127414 | 363 | predicted protein [Populus trichocarpa] | 0.933 | 0.922 | 0.862 | 1e-174 | |
| 6014908 | 359 | RecName: Full=4-hydroxy-tetrahydrodipico | 0.952 | 0.952 | 0.834 | 1e-172 | |
| 8648949 | 380 | dihydrodipicolinate synthase [Populus tr | 0.933 | 0.881 | 0.853 | 1e-171 | |
| 449432235 | 367 | PREDICTED: dihydrodipicolinate synthase | 0.947 | 0.926 | 0.835 | 1e-170 | |
| 356532087 | 363 | PREDICTED: dihydrodipicolinate synthase, | 0.958 | 0.947 | 0.810 | 1e-167 | |
| 255647005 | 363 | unknown [Glycine max] | 0.958 | 0.947 | 0.810 | 1e-166 | |
| 15225477 | 365 | dihydrodipicolinate synthase [Arabidopsi | 0.963 | 0.947 | 0.800 | 1e-166 | |
| 225453935 | 365 | PREDICTED: dihydrodipicolinate synthase | 0.958 | 0.942 | 0.832 | 1e-166 |
| >gi|255561405|ref|XP_002521713.1| dihydrodipicolinate synthase, putative [Ricinus communis] gi|223539104|gb|EEF40700.1| dihydrodipicolinate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/347 (87%), Positives = 321/347 (92%), Gaps = 3/347 (0%)
Query: 16 PVSVSCTGKNR---KWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLP 72
P SVS R KWR PQAA+IPN+HLPMRSFEVKNRTS+EDIK+LRLITAIKTPYLP
Sbjct: 21 PHSVSTDFYKRRSGKWRSPQAAVIPNFHLPMRSFEVKNRTSSEDIKSLRLITAIKTPYLP 80
Query: 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG 132
DGRFDLEAYD L+NMQIVNGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIG
Sbjct: 81 DGRFDLEAYDALLNMQIVNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 140
Query: 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192
NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGL+SHFDSVL MGPTIIYNVPS
Sbjct: 141 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLVSHFDSVLPMGPTIIYNVPS 200
Query: 193 RTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGAT 252
RTGQDIPP VIHT+AQSPNLAGVKECVGNDRVE YT GIVVWSGNDDQCHD+RWNHGAT
Sbjct: 201 RTGQDIPPCVIHTIAQSPNLAGVKECVGNDRVEEYTEKGIVVWSGNDDQCHDSRWNHGAT 260
Query: 253 GVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVF 312
GVISVTSNLVPG+MR+L+F GKNP+LN+KL PLI+WLFQEPNPI LNTALAQLGVVRPVF
Sbjct: 261 GVISVTSNLVPGLMRQLVFEGKNPALNSKLLPLIDWLFQEPNPIGLNTALAQLGVVRPVF 320
Query: 313 RLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
RLPYVPLP +R EFVNLV IGRENFVGEKDV+VLDDDDFIL+ RY
Sbjct: 321 RLPYVPLPLAQRVEFVNLVKAIGRENFVGEKDVRVLDDDDFILIGRY 367
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063919|ref|XP_002301301.1| predicted protein [Populus trichocarpa] gi|222843027|gb|EEE80574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/347 (86%), Positives = 318/347 (91%), Gaps = 3/347 (0%)
Query: 13 NCGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLP 72
NCG + + KWR PQAA IP+ HLPMRSFEVKNRTSAEDIK+LRLITAIKTPYLP
Sbjct: 22 NCGD---NYKRRGGKWRSPQAAAIPDLHLPMRSFEVKNRTSAEDIKSLRLITAIKTPYLP 78
Query: 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG 132
DGRFDLEAYD LVNMQIVNGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG+SVKVIG
Sbjct: 79 DGRFDLEAYDALVNMQIVNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGSSVKVIG 138
Query: 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192
NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EG++SHFD VL MGPTIIYNVPS
Sbjct: 139 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSVEGMVSHFDCVLPMGPTIIYNVPS 198
Query: 193 RTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGAT 252
RTGQDIPPRVIHT+AQSPNLAGVKECVGNDRVE YT GIVVWSGNDDQCHDARWNHGAT
Sbjct: 199 RTGQDIPPRVIHTIAQSPNLAGVKECVGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGAT 258
Query: 253 GVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVF 312
GVISVTSNL+PG+MR+LMF GKN LN+KL PLI+WLFQEPNPI LNTALAQLGVVRPVF
Sbjct: 259 GVISVTSNLLPGLMRKLMFEGKNSELNSKLLPLIDWLFQEPNPIALNTALAQLGVVRPVF 318
Query: 313 RLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
RLPY+PLP KR EFVNLV +IGRENFVGE +VQVLDDDDFIL+ RY
Sbjct: 319 RLPYMPLPLAKRIEFVNLVKKIGRENFVGENNVQVLDDDDFILISRY 365
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127414|ref|XP_002320068.1| predicted protein [Populus trichocarpa] gi|222860841|gb|EEE98383.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/335 (86%), Positives = 310/335 (92%)
Query: 24 KNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDD 83
++ KWRPPQAA PN HLPMRSFEVKN TSAED+K+LRLITAIKTPYLPDGRFDLEAYD
Sbjct: 27 RSGKWRPPQAAAKPNLHLPMRSFEVKNMTSAEDMKSLRLITAIKTPYLPDGRFDLEAYDA 86
Query: 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAI 143
LVNMQI NGAEG++VGGTTGEGQLMSWDEHIMLIGHTVNCFG+S+KVIGNTGSNSTREAI
Sbjct: 87 LVNMQIANGAEGVVVGGTTGEGQLMSWDEHIMLIGHTVNCFGSSIKVIGNTGSNSTREAI 146
Query: 144 HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203
HATEQGFAVGMHAALHINPYYGKTS+EG++SHFDSVL MGPTIIYNVP RTGQDIPPRVI
Sbjct: 147 HATEQGFAVGMHAALHINPYYGKTSVEGMVSHFDSVLPMGPTIIYNVPGRTGQDIPPRVI 206
Query: 204 HTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVP 263
HT+AQSPNLAGVKEC GNDRVE YT GIVVWSGNDDQCHDARWNHGATGV+SVTSNLVP
Sbjct: 207 HTIAQSPNLAGVKECAGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVVSVTSNLVP 266
Query: 264 GMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEK 323
G+MR LMF GKN LN+KL PLI+WLFQEPNPI LNTALAQLGV RPVFRLPYVPLP +
Sbjct: 267 GLMRRLMFEGKNAELNSKLLPLIDWLFQEPNPIALNTALAQLGVARPVFRLPYVPLPSAQ 326
Query: 324 RAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDR 358
R EFVNLV +IGRENFVGE+DVQVL+DDDFIL+ R
Sbjct: 327 RVEFVNLVKKIGRENFVGEEDVQVLEDDDFILIAR 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6014908|sp|Q42948.1|DAPA_TOBAC RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; Short=HTPA synthase; Flags: Precursor gi|1213069|emb|CAA56123.1| dihydrodipicolinate synthase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/345 (83%), Positives = 317/345 (91%), Gaps = 3/345 (0%)
Query: 18 SVSCTGKNRK---WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDG 74
S+ G R+ WR P+AA+IP++HLPMRS EVKNRT A+DIKALRLITAIKTPYLPDG
Sbjct: 15 SIEAAGTKRRTTRWRSPRAAVIPSFHLPMRSNEVKNRTFADDIKALRLITAIKTPYLPDG 74
Query: 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 134
RFDLEAYD LVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNT
Sbjct: 75 RFDLEAYDTLVNLQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNT 134
Query: 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRT 194
GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF+SVL MGPTIIYNVPSRT
Sbjct: 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFESVLPMGPTIIYNVPSRT 194
Query: 195 GQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGV 254
GQDIPPRVI TMA+SPNLAGVKECVGNDRVE YT +G+VVWSGNDD+CH +RW++GATGV
Sbjct: 195 GQDIPPRVIQTMAKSPNLAGVKECVGNDRVEQYTSDGVVVWSGNDDECHVSRWDYGATGV 254
Query: 255 ISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRL 314
ISVTSNLVPG+MRELMFGGKNP+LN+KL PL+EWLF EPNPI LNTALAQLGVVRPVFRL
Sbjct: 255 ISVTSNLVPGLMRELMFGGKNPALNSKLMPLMEWLFHEPNPIALNTALAQLGVVRPVFRL 314
Query: 315 PYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
PYVPL + KR EFV +V +IGRENF+GE+DVQ+LDD+DFILV RY
Sbjct: 315 PYVPLTKAKREEFVKIVKEIGRENFIGERDVQILDDNDFILVGRY 359
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8648949|emb|CAA51273.2| dihydrodipicolinate synthase [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/335 (85%), Positives = 309/335 (92%)
Query: 24 KNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDD 83
++ KWRPPQAA+ PN HLPMRSFEVKN TSAED+K+LRLITAIKTPYLPDGRFDLEAYD
Sbjct: 44 RSGKWRPPQAAVKPNLHLPMRSFEVKNMTSAEDMKSLRLITAIKTPYLPDGRFDLEAYDA 103
Query: 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAI 143
LVNMQI NGAEG++VGGTTGEGQLMS DEHIMLIGHTVNCFG+S+KVIGNTGSNSTREAI
Sbjct: 104 LVNMQIANGAEGVVVGGTTGEGQLMSRDEHIMLIGHTVNCFGSSIKVIGNTGSNSTREAI 163
Query: 144 HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203
HATEQGFAVGMHAALHINPYYGKTS+EG++SHFDSVL MGPTIIYNVP RTGQDIPPRVI
Sbjct: 164 HATEQGFAVGMHAALHINPYYGKTSVEGMVSHFDSVLPMGPTIIYNVPGRTGQDIPPRVI 223
Query: 204 HTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVP 263
HT+AQSPNLAGVKEC GNDRVE YT GIVVWSGNDDQCHDARWNHGATGV+SVTSNLVP
Sbjct: 224 HTIAQSPNLAGVKECAGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVVSVTSNLVP 283
Query: 264 GMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEK 323
G+MR LMF G N LN+KL PLI+WLFQ+ NPI LNTALAQLGVVRPVFRLPYVPLP +
Sbjct: 284 GLMRRLMFEGNNTELNSKLLPLIDWLFQDRNPIALNTALAQLGVVRPVFRLPYVPLPSAQ 343
Query: 324 RAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDR 358
R EFVNLV +IGRENFVGE+DVQVL+DDDFIL+ R
Sbjct: 344 RVEFVNLVKKIGRENFVGEEDVQVLEDDDFILIAR 378
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432235|ref|XP_004133905.1| PREDICTED: dihydrodipicolinate synthase 2, chloroplastic-like [Cucumis sativus] gi|449518437|ref|XP_004166248.1| PREDICTED: dihydrodipicolinate synthase 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 289/346 (83%), Positives = 310/346 (89%), Gaps = 6/346 (1%)
Query: 20 SCTGKNRK------WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPD 73
SC K ++ WR PQAAI+PN HLPMRS EVKNRT A+DIK+LRL+TAIKTPYLPD
Sbjct: 22 SCNAKRQRTKRTVGWRSPQAAILPNLHLPMRSLEVKNRTIADDIKSLRLVTAIKTPYLPD 81
Query: 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133
GRFDLEAYD LVN QI NGA+G+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGN
Sbjct: 82 GRFDLEAYDALVNRQIENGADGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGN 141
Query: 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR 193
TGSNSTREAIHA+EQGFAVGMHAALHINPYYGKTS+EGLISHF+ VLSMGPTIIYNVP R
Sbjct: 142 TGSNSTREAIHASEQGFAVGMHAALHINPYYGKTSIEGLISHFNCVLSMGPTIIYNVPGR 201
Query: 194 TGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATG 253
TGQDIPP VI T+A+S NLAGVKECVGNDR+E YT GIV+WSGNDDQCHDARWNHGATG
Sbjct: 202 TGQDIPPYVIQTVAESANLAGVKECVGNDRIEQYTKQGIVIWSGNDDQCHDARWNHGATG 261
Query: 254 VISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFR 313
VISVTSNLVPG+MRELMF GKNPSLN KL PL++WLF EPNPI LNTALAQLGVVRPVFR
Sbjct: 262 VISVTSNLVPGLMRELMFEGKNPSLNAKLLPLMDWLFCEPNPIGLNTALAQLGVVRPVFR 321
Query: 314 LPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
LPYVPLP+ KR EFV LV QIGRE+FVG KDVQVLDDDDFILV RY
Sbjct: 322 LPYVPLPKTKREEFVKLVEQIGREHFVGVKDVQVLDDDDFILVSRY 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532087|ref|XP_003534605.1| PREDICTED: dihydrodipicolinate synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 309/349 (88%), Gaps = 5/349 (1%)
Query: 16 PVSVSCTGKNRK-----WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPY 70
PV S NR WRP QAA+ PN+HLPMRSFE+KNRTS EDIKALRLITAIKTPY
Sbjct: 15 PVCPSNVTNNRNSRSSYWRPAQAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPY 74
Query: 71 LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV 130
LPDGRFDLEAYDDLVNMQI GAEG+IVGGTTGEGQLMSW+EHIMLI HTVNCFG +KV
Sbjct: 75 LPDGRFDLEAYDDLVNMQIGQGAEGIIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKV 134
Query: 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNV 190
IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL+G+++HF SVLSMGPTIIYNV
Sbjct: 135 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMLAHFQSVLSMGPTIIYNV 194
Query: 191 PSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHG 250
P+RTGQDIPP VI T+A+S NLAGVKECVGNDR++ YT +GIVVWSGNDDQCHDARW +G
Sbjct: 195 PARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYG 254
Query: 251 ATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRP 310
ATGVISV SNLVPG+MRELMFGG NP+LN+KL PLI+WLF PNPI LNTALAQLGVVRP
Sbjct: 255 ATGVISVVSNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRP 314
Query: 311 VFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
VFRLP+VPLP +KR EF NLV +IGRE+FVG KDV+VLDDDDF LV RY
Sbjct: 315 VFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY 363
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647005|gb|ACU23971.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 308/349 (88%), Gaps = 5/349 (1%)
Query: 16 PVSVSCTGKNRK-----WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPY 70
PV S NR WRP QAA+ PN+HLPMRSFE+KNRTS EDIKALRLITAIKTPY
Sbjct: 15 PVCPSNVTNNRNSRSSYWRPAQAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPY 74
Query: 71 LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV 130
LPDGRFDLEAYDDLVNMQI GAEG+IVGGTTGEGQLMSW+EHIMLI HTVNCFG +KV
Sbjct: 75 LPDGRFDLEAYDDLVNMQIGQGAEGIIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKV 134
Query: 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNV 190
IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL+G+++HF SVLSMGPTIIYNV
Sbjct: 135 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMLAHFQSVLSMGPTIIYNV 194
Query: 191 PSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHG 250
P+RTGQDIPP VI T+A+S NLAGVKECVGNDR++ YT +GIVVWSGNDDQCHDARW +G
Sbjct: 195 PARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYG 254
Query: 251 ATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRP 310
ATGVISV SNLVPG+MRELMFGG NP+LN KL PLI+WLF PNPI LNTALAQLGVVRP
Sbjct: 255 ATGVISVVSNLVPGLMRELMFGGVNPTLNFKLLPLIDWLFHMPNPIGLNTALAQLGVVRP 314
Query: 311 VFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
VFRLP+VPLP +KR EF NLV +IGRE+FVG KDV+VLDDDDF LV RY
Sbjct: 315 VFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY 363
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225477|ref|NP_182068.1| dihydrodipicolinate synthase [Arabidopsis thaliana] gi|14547964|sp|Q9FVC8.2|DAPA2_ARATH RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic; Short=HTPA synthase 2; Flags: Precursor gi|2583111|gb|AAB82620.1| putative dihydrodipicolinate synthase [Arabidopsis thaliana] gi|28466961|gb|AAO44089.1| At2g45440 [Arabidopsis thaliana] gi|110735769|dbj|BAE99862.1| putative dihydrodipicolinate synthase [Arabidopsis thaliana] gi|330255460|gb|AEC10554.1| dihydrodipicolinate synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/346 (80%), Positives = 309/346 (89%)
Query: 14 CGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPD 73
C + S ++ KW P+AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLPD
Sbjct: 20 CPKLFNSYKRRSSKWVSPKAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPD 79
Query: 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133
GRFDLEAYDDLVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGN
Sbjct: 80 GRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGN 139
Query: 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR 193
TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP R
Sbjct: 140 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGR 199
Query: 194 TGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATG 253
TGQDIPPR I ++Q+PNLAGVKECVGN RVE YT NG+VVWSGNDD+CHD+RW++GATG
Sbjct: 200 TGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGATG 259
Query: 254 VISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFR 313
VISVTSNLVPG+MR+LMF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVFR
Sbjct: 260 VISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFR 319
Query: 314 LPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
LPYVPLP KR EFV LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct: 320 LPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453935|ref|XP_002279840.1| PREDICTED: dihydrodipicolinate synthase 2, chloroplastic [Vitis vinifera] gi|296089164|emb|CBI38867.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/347 (83%), Positives = 319/347 (91%), Gaps = 3/347 (0%)
Query: 13 NCGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLP 72
NCG ++ +N KW+ QAA+IPN+HLPMRSFEVKNRTS +DIK+LRLITAIKTPYLP
Sbjct: 22 NCGDINKR---RNAKWKSAQAAVIPNFHLPMRSFEVKNRTSVDDIKSLRLITAIKTPYLP 78
Query: 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG 132
DGRFDLEAYD LVNMQIV+GAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIG
Sbjct: 79 DGRFDLEAYDALVNMQIVDGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 138
Query: 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192
NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGL+SHF+SVL MGPT+IYNVPS
Sbjct: 139 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPS 198
Query: 193 RTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGAT 252
RTGQDIPP VIHT+AQS NLAGVKECVGNDR++ YT N IVVWSGNDDQCHDA+W++GAT
Sbjct: 199 RTGQDIPPGVIHTVAQSANLAGVKECVGNDRIKQYTDNRIVVWSGNDDQCHDAKWDYGAT 258
Query: 253 GVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVF 312
GVISVTSNL+PG+MR+L+F GKNPSLN K+ PL+ WLF+EPNPI LNTALAQLGVVRPVF
Sbjct: 259 GVISVTSNLIPGLMRQLLFKGKNPSLNAKIMPLVNWLFEEPNPIGLNTALAQLGVVRPVF 318
Query: 313 RLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
RLPYVPLP KR EFVN+V +IGRENFVGEKDV+VLDDDDFILV RY
Sbjct: 319 RLPYVPLPLAKRVEFVNIVKEIGRENFVGEKDVKVLDDDDFILVGRY 365
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2050936 | 365 | DHDPS2 "dihydrodipicolinate sy | 0.963 | 0.947 | 0.800 | 4e-154 | |
| TAIR|locus:2101921 | 365 | DHDPS1 "dihydrodipicolinate sy | 0.935 | 0.920 | 0.788 | 1.8e-149 | |
| TIGR_CMR|CPS_3680 | 306 | CPS_3680 "dihydrodipicolinate | 0.824 | 0.967 | 0.53 | 2.8e-82 | |
| TIGR_CMR|CHY_1156 | 293 | CHY_1156 "dihydrodipicolinate | 0.743 | 0.911 | 0.35 | 1.1e-37 | |
| TIGR_CMR|CBU_1222 | 289 | CBU_1222 "dihydrodipicolinate | 0.757 | 0.941 | 0.333 | 6.3e-37 | |
| TIGR_CMR|DET_0973 | 297 | DET_0973 "dihydrodipicolinate | 0.740 | 0.895 | 0.371 | 8e-37 | |
| TIGR_CMR|GSU_0159 | 290 | GSU_0159 "dihydrodipicolinate | 0.749 | 0.927 | 0.332 | 8.3e-35 | |
| UNIPROTKB|P0A6L2 | 292 | dapA [Escherichia coli K-12 (t | 0.727 | 0.893 | 0.341 | 2.2e-34 | |
| TIGR_CMR|SO_1879 | 294 | SO_1879 "dihydrodipicolinate s | 0.721 | 0.880 | 0.329 | 2.2e-34 | |
| UNIPROTKB|Q97R25 | 311 | dapA "4-hydroxy-tetrahydrodipi | 0.771 | 0.890 | 0.315 | 9.5e-34 |
| TAIR|locus:2050936 DHDPS2 "dihydrodipicolinate synthase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
Identities = 277/346 (80%), Positives = 309/346 (89%)
Query: 14 CGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPD 73
C + S ++ KW P+AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLPD
Sbjct: 20 CPKLFNSYKRRSSKWVSPKAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPD 79
Query: 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133
GRFDLEAYDDLVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGN
Sbjct: 80 GRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGN 139
Query: 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR 193
TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP R
Sbjct: 140 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGR 199
Query: 194 TGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATG 253
TGQDIPPR I ++Q+PNLAGVKECVGN RVE YT NG+VVWSGNDD+CHD+RW++GATG
Sbjct: 200 TGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGATG 259
Query: 254 VISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFR 313
VISVTSNLVPG+MR+LMF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVFR
Sbjct: 260 VISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFR 319
Query: 314 LPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
LPYVPLP KR EFV LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct: 320 LPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 365
|
|
| TAIR|locus:2101921 DHDPS1 "dihydrodipicolinate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 265/336 (78%), Positives = 302/336 (89%)
Query: 24 KNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDD 83
+N KW P AA++PN+HLPMRS E KNRT+ +DI++LR+ITAIKTPYLPDGRFDL+AYDD
Sbjct: 30 RNAKWVSPIAAVVPNFHLPMRSLEDKNRTNTDDIRSLRVITAIKTPYLPDGRFDLQAYDD 89
Query: 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAI 143
LVN QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG +KVIGNTGSNSTREAI
Sbjct: 90 LVNTQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGRIKVIGNTGSNSTREAI 149
Query: 144 HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203
HATEQGFA+GMH ALHINPYYGKTS+EG+ +HF +VL MGPTIIYNVP RT QDIPP+VI
Sbjct: 150 HATEQGFAMGMHGALHINPYYGKTSIEGMNAHFQTVLHMGPTIIYNVPGRTCQDIPPQVI 209
Query: 204 HTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVP 263
++Q+PN+AGVKECVGN+RVE YT GIVVWSGNDDQCHD+RW+HGATGVISVTSNLVP
Sbjct: 210 FKLSQNPNMAGVKECVGNNRVEEYTEKGIVVWSGNDDQCHDSRWDHGATGVISVTSNLVP 269
Query: 264 GMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEK 323
G+MR+LMF G+N +LN KL PL++WLFQEPNPI +NTALAQLGV RPVFRLPYVPLP K
Sbjct: 270 GLMRKLMFEGRNSALNAKLLPLMDWLFQEPNPIGVNTALAQLGVARPVFRLPYVPLPLSK 329
Query: 324 RAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
R EFV LV +IGRE+FVG++DVQVLDDDDFIL+ RY
Sbjct: 330 RIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY 365
|
|
| TIGR_CMR|CPS_3680 CPS_3680 "dihydrodipicolinate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 159/300 (53%), Positives = 206/300 (68%)
Query: 57 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIML 116
+KA L+TAIKTPY G L+ YD L+ QI G +G+IVGGTTGEG L+SW+EH+ML
Sbjct: 4 LKAASLMTAIKTPYTDKGEVCLKTYDFLIEQQISAGVDGIIVGGTTGEGHLLSWEEHLML 63
Query: 117 IGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF 176
I H VN FG + ++GNTGSN+TREAI ATE GFA+GM AAL INPYYG+TS+ G+ HF
Sbjct: 64 IAHCVNNFGDKLIIVGNTGSNNTREAIKATENGFAMGMDAALQINPYYGRTSIRGVSEHF 123
Query: 177 DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWS 236
VL +GP IYNVP RTGQD+ P +I ++ N GVKEC GNDR+ +Y GI WS
Sbjct: 124 KRVLDIGPAFIYNVPGRTGQDLTPEIIEPLSTHKNFIGVKECSGNDRIAYYEKRGISCWS 183
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG---KNPSLNTKLFPLIEWLFQEP 293
GNDD+C+ R HG+ GVISV SN++PG MR+LM ++ LN KL L++WLF EP
Sbjct: 184 GNDDECYVGRHVHGSHGVISVASNIIPGFMRQLMDKDNVEESAKLNDKLQGLMKWLFCEP 243
Query: 294 NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDF 353
NPI +NTA+ V FRLPY+ L +E+R + L+ I ++ VG+ + +L+D DF
Sbjct: 244 NPIAINTAMIMTDAVPNNFRLPYIALTKEQREVGLELLKAIETKDLVGDS-LSLLEDSDF 302
|
|
| TIGR_CMR|CHY_1156 CHY_1156 "dihydrodipicolinate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 98/280 (35%), Positives = 154/280 (55%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
RL+TA+ TP+ DG+ +LE L + + NG++G++V GTTGE +S++E + L
Sbjct: 6 RLLTAMVTPFDRDGKVNLEQAQKLASFLVENGSDGIVVAGTTGESPTLSFEEKVDLFKAV 65
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
V G VI TGSN+T +I T+ VG+ + + PYY K S +GL+ HF ++
Sbjct: 66 VEAVGGKAAVIAGTGSNATEASIKLTKAAEKVGVDGVMLVAPYYNKPSQKGLVEHFQAIA 125
Query: 181 SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHYTG---NGIVV 234
P +IYN+P RTG +I P+ + +A+ N+ +KE G+ D+ + V
Sbjct: 126 RATSLPVMIYNIPGRTGVNILPKTMAKIAELENVVAIKEAAGSVDQATELIRILPERVKV 185
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL----MFGGKNPS--LNTKLFPLIEW 288
+SG DD G GV+SV S+LV ++E+ + G + L+ +L+PLI+
Sbjct: 186 FSG-DDSLTLPILAVGGYGVVSVASHLVGLKIKEMIDQFLLGNVAVAARLHQELYPLIKA 244
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFV 328
LF NP+P+ TAL +G FRLP V + +E++ E V
Sbjct: 245 LFITTNPVPVKTALNLMGHKVGGFRLPLVDMTEEEKEELV 284
|
|
| TIGR_CMR|CBU_1222 CBU_1222 "dihydrodipicolinate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 94/282 (33%), Positives = 145/282 (51%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ A+ TP +G D +LV + N +G+++ GTTGE ++ +E +I V+
Sbjct: 6 LVALVTPMQENGEIDYSNLKELVEWHLENDTDGLVILGTTGESPTITAEERHKIIRQVVD 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182
+ +I TG+NST I T+Q +G AAL + PYY K + EGL +F ++
Sbjct: 66 QVNKKIPIIVGTGANSTVHTIEMTQQAMELGADAALIVTPYYNKPTQEGLFQYFKTIAEA 125
Query: 183 GPT--IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHYTGNGIVVWSGND 239
P I+YNVPSRT D+ P + +A+ N+ G+KE G+ RV+ + + SG+D
Sbjct: 126 VPIAQILYNVPSRTACDLLPETVIRIAKCSNVVGLKEATGDIQRVKQLKAEDLDLLSGDD 185
Query: 240 DQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSL------NTKLFPLIEWLFQEP 293
D G GVISV +N+VP + ++ N +L PL + LF E
Sbjct: 186 KTAMDFMLA-GGKGVISVVANVVPKPYHAFCITAVSGNVELAKKENDQLSPLYDSLFVES 244
Query: 294 NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
NPIP+ AL+Q+GV+ RLP PL + A+ + Q+G
Sbjct: 245 NPIPVKWALSQMGVIPKGIRLPLTPLSERYHAKVRESLQQVG 286
|
|
| TIGR_CMR|DET_0973 DET_0973 "dihydrodipicolinate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 104/280 (37%), Positives = 144/280 (51%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
RLITA+ TP+ DG D L + +G++G++V GTTGE ++W+E L
Sbjct: 6 RLITAMVTPFKKDGTVDYAQAQKLALGLLDSGSDGLVVVGTTGESPTVTWEEEHALFAAV 65
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
+ G KVI TG+NST+EA+ T + +G+ A L + PYY K + EGL HF ++
Sbjct: 66 KSAVGNRGKVIAGTGANSTQEALENTLKAEKIGVDACLLVVPYYNKPTQEGLYLHFKTIA 125
Query: 181 SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHYTGN---GIVV 234
P I+YNVPSRT + P + ++Q PN+ GVKE G D + N V
Sbjct: 126 EATKLPCILYNVPSRTITHMSPETVIRLSQIPNIVGVKEASGKLDDIAQIINNVRPDFTV 185
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM--FGGKNP----SLNTKLFPLIEW 288
WSGND GA GVISV S++V ++E++ F N +++ L PLI
Sbjct: 186 WSGNDSDTLPML-AMGAYGVISVASHIVGKQIKEMITSFVSGNTDNAAAIHRHLTPLIRS 244
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFV 328
LF NPIP+ AL LG RLP EK A +
Sbjct: 245 LFVVSNPIPIKYALNYLGFEVGGLRLPMTEA-DEKTAALI 283
|
|
| TIGR_CMR|GSU_0159 GSU_0159 "dihydrodipicolinate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 94/283 (33%), Positives = 142/283 (50%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I AI TP+ +G D E +LV QI NG + ++ GTTGE + +DEH+ ++ +
Sbjct: 6 IVAIVTPFT-NGAVDQEKLRELVEFQITNGTDAIVPCGTTGESSTLDYDEHMDVVKIVIE 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182
V VI TGSNST EAI + + G L + PYY K + EGL+ H+ ++
Sbjct: 65 QVNKRVPVIAGTGSNSTAEAIELSRKAKEAGADGVLLVTPYYNKPTQEGLVRHYTAIADA 124
Query: 183 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 236
P I+YNVP RTG ++ P + +A N+ +KE G+ + G+ I V S
Sbjct: 125 VAIPQILYNVPGRTGVNMLPETVARLAPHKNIVAIKEATGSLQQASEILALCGDQIDVLS 184
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNPS---LNTKLFPLIEWLF 290
G DD GA GVISV +N++P + +L F G + L+ + +F
Sbjct: 185 G-DDFITFPMMACGAKGVISVLANIMPKAVADLTDAFFAGDLETARRLHLNTLKISNAMF 243
Query: 291 QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333
E NPIP+ TAL +G RLP P+ + +A+ ++ +
Sbjct: 244 IESNPIPVKTALGLMGKCSDEVRLPLCPMSEGNKAKLTAIMKE 286
|
|
| UNIPROTKB|P0A6L2 dapA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 94/275 (34%), Positives = 140/275 (50%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 183 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 236
P I+YNVPSRTG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGGKNPS---LNTKLFPLIEWLF 290
G+D D G GVISVT+N+ M +L G +N +L PL LF
Sbjct: 186 GDDASALDFM-QLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 291 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 324
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
|
|
| TIGR_CMR|SO_1879 SO_1879 "dihydrodipicolinate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/273 (32%), Positives = 140/273 (51%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I A+ TP DG D + + LV I G + ++ GTTGE + +EH+ ++ TV
Sbjct: 6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMNEHVTVVAQTVK 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182
+ VIG G+N+T EAI T+ VG+ A L + PYY K + +GL++H+ +V +
Sbjct: 66 FAAGRIPVIGGNGANATAEAIELTKSLSKVGVAAMLGVTPYYNKPTPKGLVAHYKAVAAS 125
Query: 183 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 236
P I+YNVP RT D+ P + + N+ GVKE G+ R+ GN +++S
Sbjct: 126 TDIPQILYNVPGRTAVDMKPETVAELVSVSNIIGVKEATGDVSRVKRLRELCGNDFMLYS 185
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMREL----MFGGKN--PSLNTKLFPLIEWLF 290
G+D + G GVISV +N+VP + + + G S++ L L LF
Sbjct: 186 GDDATASEFLLL-GGNGVISVANNIVPKAFKAMCDAALAGNAELAASIDEPLRGLYSTLF 244
Query: 291 QEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQE 322
E NPIP+ A ++G++ RLP L ++
Sbjct: 245 CEANPIPVKWAAHRMGLIECGHIRLPLTELSEQ 277
|
|
| UNIPROTKB|Q97R25 dapA "4-hydroxy-tetrahydrodipicolinate synthase" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 92/292 (31%), Positives = 141/292 (48%)
Query: 53 SAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE 112
S +D+K ++ITA TP+ DG + +A L+ + + +G+++ GTT E ++ DE
Sbjct: 2 SYQDLKKCKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDE 61
Query: 113 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA-LHINPYYGKTSLEG 171
+ L V +I G+N TR++I ++ G AA L I PYY K S EG
Sbjct: 62 ELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEG 121
Query: 172 LISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC--VGNDR--VE 225
+ HF ++ P IIYN+P R ++ P + +A PN+ GVKEC + N +E
Sbjct: 122 MYQHFKTIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIE 181
Query: 226 HYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLN 279
H ++++G D A N GA GVISV S+ M E+ K ++
Sbjct: 182 HKPEE-FLIYTGEDGDAFHAM-NLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQ 239
Query: 280 TKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331
K P + LF P+P P+ L +G RLP VP P+E + +V
Sbjct: 240 RKFIPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDAKRIIKVV 291
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q39535 | DAPA_COILA | 4, ., 2, ., 1, ., 5, 2 | 0.7138 | 0.9693 | 0.9230 | N/A | no |
| Q9LZX6 | DAPA1_ARATH | 4, ., 2, ., 1, ., 5, 2 | 0.7823 | 0.9470 | 0.9315 | no | no |
| P26259 | DAPA_MAIZE | 4, ., 2, ., 1, ., 5, 2 | 0.7645 | 0.9108 | 0.8605 | N/A | no |
| Q42800 | DAPA_SOYBN | 4, ., 2, ., 1, ., 5, 2 | 0.8231 | 0.9136 | 0.9879 | yes | no |
| P24847 | DAPA2_WHEAT | 4, ., 2, ., 1, ., 5, 2 | 0.7321 | 0.9693 | 0.9230 | N/A | no |
| P24846 | DAPA1_WHEAT | 4, ., 2, ., 1, ., 5, 2 | 0.7383 | 0.9582 | 0.8865 | N/A | no |
| Q42948 | DAPA_TOBAC | 4, ., 2, ., 1, ., 5, 2 | 0.8347 | 0.9526 | 0.9526 | N/A | no |
| Q9FVC8 | DAPA2_ARATH | 4, ., 2, ., 1, ., 5, 2 | 0.8005 | 0.9637 | 0.9479 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | 0.983 |
| 4th Layer | 4.2.1.52 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| PLN02417 | 280 | PLN02417, PLN02417, dihydrodipicolinate synthase | 0.0 | |
| pfam00701 | 289 | pfam00701, DHDPS, Dihydrodipicolinate synthetase f | 1e-125 | |
| cd00950 | 284 | cd00950, DHDPS, Dihydrodipicolinate synthase (DHDP | 1e-113 | |
| PRK03170 | 292 | PRK03170, PRK03170, dihydrodipicolinate synthase; | 4e-85 | |
| cd00408 | 281 | cd00408, DHDPS-like, Dihydrodipicolinate synthase | 6e-84 | |
| TIGR00674 | 285 | TIGR00674, dapA, dihydrodipicolinate synthase | 1e-70 | |
| COG0329 | 299 | COG0329, DapA, Dihydrodipicolinate synthase/N-acet | 2e-66 | |
| TIGR02313 | 294 | TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene- | 5e-36 | |
| cd00954 | 288 | cd00954, NAL, N-Acetylneuraminic acid aldolase, al | 3e-22 | |
| PRK04147 | 293 | PRK04147, PRK04147, N-acetylneuraminate lyase; Pro | 1e-18 | |
| cd00953 | 279 | cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconat | 1e-15 | |
| TIGR00683 | 290 | TIGR00683, nanA, N-acetylneuraminate lyase | 2e-13 | |
| cd00951 | 289 | cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydra | 3e-10 | |
| cd00952 | 309 | cd00952, CHBPH_aldolase, Trans-o-hydroxybenzyliden | 1e-07 | |
| TIGR03249 | 296 | TIGR03249, KdgD, 5-dehydro-4-deoxyglucarate dehydr | 3e-07 | |
| PRK03620 | 303 | PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate deh | 6e-07 |
| >gnl|CDD|178038 PLN02417, PLN02417, dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Score = 561 bits (1447), Expect = 0.0
Identities = 230/280 (82%), Positives = 247/280 (88%)
Query: 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI 117
K LRLITAIKTPYLPDGRFDLEAYD LVNMQI NGAEG+IVGGTTGEGQLMSWDEHIMLI
Sbjct: 1 KKLRLITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI 60
Query: 118 GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFD 177
GHTVNCFG +KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS EGLI HF+
Sbjct: 61 GHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFE 120
Query: 178 SVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSG 237
+VL MGPTIIYNVP RTGQDIPP VI +AQ PN AGVKEC GNDRV+ YT GI++WSG
Sbjct: 121 TVLDMGPTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKECTGNDRVKQYTEKGILLWSG 180
Query: 238 NDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIP 297
NDD+CHDARW++GA GVISVTSNLVPG+M +LMF GKN LN KL PL++WLF EPNPI
Sbjct: 181 NDDECHDARWDYGADGVISVTSNLVPGLMHKLMFAGKNKELNDKLLPLMDWLFCEPNPIG 240
Query: 298 LNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
LNTALAQLG++RPVFRLPYVPL KRAEFV LV IGRE
Sbjct: 241 LNTALAQLGLIRPVFRLPYVPLDLAKRAEFVALVKAIGRE 280
|
Length = 280 |
| >gnl|CDD|201403 pfam00701, DHDPS, Dihydrodipicolinate synthetase family | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-125
Identities = 128/288 (44%), Positives = 167/288 (57%), Gaps = 13/288 (4%)
Query: 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGH 119
LITA+ TP+ DGR D EA L+ I GA+G+ VGGTTGE +S +EH LI
Sbjct: 3 EGLITALVTPFDTDGRLDEEALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQLIEI 62
Query: 120 TVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV 179
TV+ + VI TGSNSTREAIH + A G L + PYY K S EGL HF ++
Sbjct: 63 TVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHFKAI 122
Query: 180 LSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIV 233
+ P I+YNVPSRTGQD+ P I +A+ PN+ GVK+ VG+ + + G
Sbjct: 123 AAATDLPVILYNVPSRTGQDLTPETIERLAECPNVVGVKDAVGDLERMENIRKRAGPDFT 182
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP------SLNTKLFPLIE 287
+ SG DD+ + + GA GVISVTSN+ P +MR++ KN LN KL PL++
Sbjct: 183 ILSG-DDETALSYLSLGADGVISVTSNIAPKLMRDIYRALKNGDFATAALLNEKLLPLMK 241
Query: 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
LF EPNPIP+ TAL LG+ RLP PL +E+R E L+ +G
Sbjct: 242 ILFAEPNPIPVKTALQLLGLDVGPCRLPLTPLSEEEREELDALLKALG 289
|
This family has a TIM barrel structure. Length = 289 |
| >gnl|CDD|188637 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS) | Back alignment and domain information |
|---|
Score = 330 bits (850), Expect = e-113
Identities = 115/283 (40%), Positives = 157/283 (55%), Gaps = 13/283 (4%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
ITA+ TP+ DG D +A + L+ QI NG +G++V GTTGE +S +EH +I
Sbjct: 3 GSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAV 62
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
V V VI TGSN+T EAI T++ G AAL + PYY K S EGL +HF ++
Sbjct: 63 VEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIA 122
Query: 181 --SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY---TGNGIVV 234
+ P I+YNVP RTG +I P + +A+ PN+ G+KE G+ DRV + V
Sbjct: 123 EATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSELIALCPDDFAV 182
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP------SLNTKLFPLIEW 288
SG+D G GVISV +N+ P +M E++ L+ KL PLI+
Sbjct: 183 LSGDDALTLPF-LALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLIKA 241
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331
LF EPNPIP+ ALA LG++ RLP VPL +E RA+ +
Sbjct: 242 LFAEPNPIPVKAALALLGLISGELRLPLVPLSEELRAKLRAAL 284
|
Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. Length = 284 |
| >gnl|CDD|235107 PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 4e-85
Identities = 109/277 (39%), Positives = 147/277 (53%), Gaps = 13/277 (4%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
ITA+ TP+ DG D A LV+ I NG +G++V GTTGE ++ +EH LI
Sbjct: 4 GSITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAV 63
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
V V VI TGSNST EAI T+ G AL + PYY K + EGL HF ++
Sbjct: 64 VEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIA 123
Query: 181 SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY---TGNGIVV 234
P I+YNVP RTG DI P + +A+ PN+ G+KE G+ +RV + V
Sbjct: 124 EATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERVSELIELVPDDFAV 183
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
+SG+D G GVISV +N+ P M E+ G ++ +L PL +
Sbjct: 184 YSGDDALALPFL-ALGGVGVISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLHKA 242
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRA 325
LF EPNPIP+ AL LG++ RLP VPL +E++
Sbjct: 243 LFIEPNPIPVKAALNLLGLIEGELRLPLVPLSEEEKE 279
|
Length = 292 |
| >gnl|CDD|188630 cd00408, DHDPS-like, Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Score = 255 bits (655), Expect = 6e-84
Identities = 107/282 (37%), Positives = 148/282 (52%), Gaps = 13/282 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+I A+ TP+ DG DL+A LV I G +G++V GTTGE ++ +E +I V
Sbjct: 1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVV 60
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL- 180
V VI G+NSTREAI G L + PYY K S EG+++HF +V
Sbjct: 61 EAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVAD 120
Query: 181 -SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGND----RVEHYTGNGIVVW 235
S P I+YN+P RTG D+ P I +A+ PN+ G+K+ G+ R+ G V
Sbjct: 121 ASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVL 180
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP------SLNTKLFPLIEWL 289
SG+DD A GA G IS +N+ P + L + +L +L PLIE L
Sbjct: 181 SGDDDLLLPA-LALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL 239
Query: 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331
F+E NP P+ ALA LG+ RLP VPL +E+RA+ L+
Sbjct: 240 FKEGNPAPVKAALALLGLDAGPVRLPLVPLSEEERAKLEALL 281
|
Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. Length = 281 |
| >gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 1e-70
Identities = 107/278 (38%), Positives = 150/278 (53%), Gaps = 19/278 (6%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+ITA+ TP+ DG D A + L++ QI NG + ++V GTTGE +S +EH +I V
Sbjct: 2 VITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVV 61
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181
+ V VI TGSN+T EAI T+ VG L + PYY K + EGL HF ++
Sbjct: 62 DLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAE 121
Query: 182 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVW 235
P I+YNVPSRTG + P + +A+ PN+ +KE GN ++ + VV
Sbjct: 122 EVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVL 181
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP---------SLNTKLFPLI 286
SG+D G GVISVT+N+ P +M+E++ N ++ KL PL
Sbjct: 182 SGDDALTLPMM-ALGGKGVISVTANVAPKLMKEMV---NNALEGDFAEAREIHQKLMPLH 237
Query: 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKR 324
+ LF E NPIP+ TALA LG++ RLP L +E R
Sbjct: 238 KALFIETNPIPVKTALALLGLIEGELRLPLTELSEEHR 275
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment [Amino acid biosynthesis, Aspartate family]. Length = 285 |
| >gnl|CDD|223406 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-66
Identities = 110/281 (39%), Positives = 150/281 (53%), Gaps = 15/281 (5%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+I A+ TP+ DG D EA LV I G +G++V GTTGE ++ +E ++ V
Sbjct: 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVV 67
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181
G V VI GSNST EAI + +G L + PYY K S EGL +HF ++
Sbjct: 68 EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE 127
Query: 182 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHYT----GNGIVV 234
P I+YN+PSRTG D+ P I +A+ PN+ GVK+ G+ DR+E +V
Sbjct: 128 AVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIAALGDRDFIV 187
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFPLIEW 288
SG+D+ A GA GVISVT+N+ P + EL K L +L PLI
Sbjct: 188 LSGDDELALPAL-LLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLPLIRL 246
Query: 289 LFQEPNPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFV 328
LF+E NPIP+ AL LG+ RLP VPL +E+R + +
Sbjct: 247 LFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVL 287
|
Length = 299 |
| >gnl|CDD|131366 TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Score = 132 bits (332), Expect = 5e-36
Identities = 81/291 (27%), Positives = 131/291 (45%), Gaps = 21/291 (7%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I + TP+ +G D EA +L+ QI G+ + VGGT+GE ++ +E I + ++
Sbjct: 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAID 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ TG+ + E + T+ G AA+ I PYY K + E L HF D+
Sbjct: 65 QIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADA 124
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEHYT------GNG 231
V P IIYN+P R Q+I P+ + + + PN+ G KE N EH G
Sbjct: 125 VPDF-PIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKE--SNKDFEHLNHLFLEAGRD 181
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPL 285
+++ G + C GA G I+ T+N+ P + E G L+ +L
Sbjct: 182 FLLFCGIELLCL-PMLAIGAAGSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLEA 240
Query: 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336
+ +F++ NP PL AL +G++ R P E ++ + G+
Sbjct: 241 NDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKYGK 291
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. Length = 294 |
| >gnl|CDD|188641 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL) | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-22
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
LI A+ TP+ +G + + +V+ I G +G+ V G+TGEG L+S +E +
Sbjct: 4 LIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIV 63
Query: 121 VNCFGASVKVIGNTGSNSTREAI----HATEQGFAVGMHAALHINPYYGKTSLEGLISHF 176
V +I + GS + +E+ HA E G+ A I P+Y K S E + ++
Sbjct: 64 AEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY----DAISAITPFYYKFSFEEIKDYY 119
Query: 177 DSVL---SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTG 229
++ + P IIY++P+ TG ++ + + PN+ GVK + +R+ +
Sbjct: 120 REIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDLYDLERIRAASP 179
Query: 230 NGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM 270
+V +G D+ A GA G I T N+ R++
Sbjct: 180 EDKLVLNGFDEMLLSAL-ALGADGAIGSTYNVNGKRYRKIF 219
|
N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. Length = 288 |
| >gnl|CDD|179749 PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-18
Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 30/297 (10%)
Query: 58 KALRLI-TAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDE--H 113
K L+ + A+ TP+ DG+ D + LV I G +G+ VGG+TGE L+S +E
Sbjct: 2 KNLKGVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQ 61
Query: 114 IMLIGHTVNCFGASVKVIGNTGSNSTREAI----HATEQGFAVGMHAALHINPYYGKTSL 169
++ I VK+I GS +T EA +ATE G+ A + P+Y S
Sbjct: 62 VLEIVAEEA--KGKVKLIAQVGSVNTAEAQELAKYATELGY----DAISAVTPFYYPFSF 115
Query: 170 EGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DR 223
E + ++ ++ + P I+YN+P+ TG ++ + + P + GVK+ G+ +R
Sbjct: 116 EEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLYQLER 175
Query: 224 VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGM----MRELMFGGKNP--- 276
+ + ++++G D+ GA G I T N V G + E G
Sbjct: 176 IRKAFPD-KLIYNGFDEMFASG-LLAGADGAIGSTYN-VNGWRARQIFEAAKAGDIQEAQ 232
Query: 277 SLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333
L + +I+ L + L L +GV + R P+ P+ ++ L +
Sbjct: 233 ELQHECNDVIDLLIKNGVYPGLKEILHYMGVDAGLCRKPFKPVDEKYLPALKALAAK 289
|
Length = 293 |
| >gnl|CDD|188640 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
IT + TP+ + D E + I G + + V GTTG G +S+ E + L+
Sbjct: 5 ITPVITPF-TGNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKA--- 60
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLS 181
+ KVI GS + E+I + G++A + PYY E LI +F + S
Sbjct: 61 YSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS 120
Query: 182 MGPTIIYNVPSRTGQDIPPRVIHTMAQSP-NLAGVKECVGNDRVEH-----YTGNGIVVW 235
PT IYN P TG DI R+ + ++ ++ GVK+ + + H V+
Sbjct: 121 PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNED--ISHMLEYKRLVPDFKVY 178
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMREL 269
SG D A + G G ++ SN +P + ++
Sbjct: 179 SGPDSLIFSALRS-GLDGSVAAASNYLPEVFVKI 211
|
KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. Length = 279 |
| >gnl|CDD|188072 TIGR00683, nanA, N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 45/208 (21%), Positives = 96/208 (46%), Gaps = 10/208 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGA-EGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ +A+ + DG + + ++ I +G+ VGG+TGE ++S +E +
Sbjct: 4 IFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIA 63
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
+ + +I GS + +EA+ + +G + P+Y K S + ++D+++
Sbjct: 64 KDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTII 123
Query: 181 SMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIV 233
+ I+Y++P TG ++ + ++P + GVK G+ +R++ N +
Sbjct: 124 AETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPN-HL 182
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNL 261
+W+G D+ A + G G I T N+
Sbjct: 183 IWAGFDEMMLPAA-SLGVDGAIGSTFNV 209
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 290 |
| >gnl|CDD|188638 cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
Query: 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS 127
T + DG FD +AY V + GA + G TGE ++ DE+ ++ V
Sbjct: 10 THFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGR 69
Query: 128 VKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PT 185
V V+ G T AI + G L + PY + EGL +H ++V
Sbjct: 70 VPVLAGAGYG-TATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGV 128
Query: 186 IIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN 221
I+YN R + + +A+ PNL G K+ VG+
Sbjct: 129 IVYN---RANAVLTADSLARLAERCPNLVGFKDGVGD 162
|
5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. Length = 289 |
| >gnl|CDD|188639 cd00952, CHBPH_aldolase, Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 12/171 (7%)
Query: 56 DIKALRLITAIKTPYLPDGR-------FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM 108
DIK + I + TP PD DL+ LV I G +G++ GT GE +
Sbjct: 1 DIKGVWAI--VPTPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMGTFGECATL 58
Query: 109 SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS 168
+W+E + V V V + +TR+ I T +G + P +
Sbjct: 59 TWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLD 118
Query: 169 LEGLISHFDSVLSMGPT---IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216
++ + + V P IY P D P +AQ P + K
Sbjct: 119 VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAK 169
|
Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. Length = 309 |
| >gnl|CDD|132293 TIGR03249, KdgD, 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 36/293 (12%)
Query: 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS 127
TP+ DG FD AY + + + G E + G TGE ++ E+ ++ V+
Sbjct: 15 TPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGK 74
Query: 128 VKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV---LSMGP 184
V V G N T +AI G L + PY EGL +H ++V +G
Sbjct: 75 VPVYTGVGGN-TSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLG- 132
Query: 185 TIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEHYT------GNGIVVWSG 237
I+Y R + + +A PNL G K+ +G+ +E G+ + G
Sbjct: 133 VIVYQ---RDNAVLNADTLERLADRCPNLVGFKDGIGD--MEQMIEITQRLGDRLGYLGG 187
Query: 238 --NDDQCHDARWNHGATGVISVTSNLVPGMMR---ELMFGGKNPSLNTKL----FPLIEW 288
+ A G T S N +P + R E + G + ++ P+ E
Sbjct: 188 MPTAEVTAPAYLPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKEFILPINEI 247
Query: 289 LFQEPN-PIPLNTALAQL-----GVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
++ + + A ++ G VRP P L +E+ A+ ++ + G
Sbjct: 248 RNRKKGYAVSIIKAGMEIVGLPAGPVRP----PLTDLTKEEYAQLEVILKKAG 296
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. Length = 296 |
| >gnl|CDD|235141 PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS 127
TP+ DG FD AY + + GA + G TGE ++ DE+ ++ V
Sbjct: 17 TPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGR 76
Query: 128 VKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL-SMG-PT 185
V VI G T +AI + G L + PY + EGL +H ++V S
Sbjct: 77 VPVIAGAGGG-TAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGV 135
Query: 186 IIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN 221
I+YN R + + +A+ PNL G K+ VG+
Sbjct: 136 IVYN---RDNAVLTADTLARLAERCPNLVGFKDGVGD 169
|
Length = 303 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 100.0 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 100.0 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 100.0 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 100.0 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 100.0 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 100.0 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 100.0 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 100.0 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 100.0 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 100.0 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 100.0 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 100.0 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 100.0 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 100.0 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 100.0 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 100.0 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 99.92 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 99.87 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 99.64 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 99.6 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 99.43 | |
| PF06187 | 382 | DUF993: Protein of unknown function (DUF993); Inte | 98.34 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 97.73 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 97.69 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.47 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 97.27 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 97.2 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.14 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 97.12 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.98 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 96.31 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 96.3 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.11 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.09 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.01 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 95.93 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 95.84 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 95.8 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 95.78 | |
| CHL00040 | 475 | rbcL ribulose-1,5-bisphosphate carboxylase/oxygena | 95.68 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.67 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 95.56 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 95.52 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 95.5 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 95.43 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 95.41 | |
| cd08206 | 414 | RuBisCO_large_I_II_III Ribulose bisphosphate carbo | 95.31 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 95.31 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 95.19 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.17 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 95.08 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.03 | |
| cd08208 | 424 | RLP_Photo Ribulose bisphosphate carboxylase like p | 95.01 | |
| cd08213 | 412 | RuBisCO_large_III Ribulose bisphosphate carboxylas | 95.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 94.96 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 94.95 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 94.84 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 94.79 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 94.71 | |
| PRK04208 | 468 | rbcL ribulose bisophosphate carboxylase; Reviewed | 94.7 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.65 | |
| cd08148 | 366 | RuBisCO_large Ribulose bisphosphate carboxylase la | 94.61 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 94.6 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 94.51 | |
| PRK06852 | 304 | aldolase; Validated | 94.4 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 94.38 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 94.3 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 94.27 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 94.27 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 94.25 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 94.25 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 94.16 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 94.13 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 94.11 | |
| PF00016 | 309 | RuBisCO_large: Ribulose bisphosphate carboxylase l | 94.09 | |
| PLN02428 | 349 | lipoic acid synthase | 93.97 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 93.9 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 93.88 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 93.84 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 93.83 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 93.79 | |
| cd08212 | 450 | RuBisCO_large_I Ribulose bisphosphate carboxylase | 93.75 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 93.67 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.67 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.63 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 93.58 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 93.57 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 93.57 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 93.49 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 93.46 | |
| PRK09549 | 407 | mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno | 93.46 | |
| PLN02535 | 364 | glycolate oxidase | 93.44 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.42 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 93.39 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 93.39 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 93.32 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 93.25 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 93.18 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 93.11 | |
| cd08211 | 439 | RuBisCO_large_II Ribulose bisphosphate carboxylase | 93.1 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 93.08 | |
| TIGR03332 | 407 | salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp | 93.07 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.03 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 93.02 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 93.01 | |
| PLN02591 | 250 | tryptophan synthase | 93.0 | |
| PRK01008 | 372 | queuine tRNA-ribosyltransferase; Provisional | 92.97 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 92.95 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 92.93 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 92.85 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 92.83 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.82 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 92.77 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 92.74 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 92.73 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 92.73 | |
| PLN02979 | 366 | glycolate oxidase | 92.7 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 92.67 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 92.63 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 92.56 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 92.56 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 92.5 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 92.49 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 92.48 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 92.45 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 92.43 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 92.4 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 92.39 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 92.37 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 92.29 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 92.26 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 92.22 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 92.12 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 91.82 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 91.8 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 91.78 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 91.68 | |
| PF01702 | 238 | TGT: Queuine tRNA-ribosyltransferase; InterPro: IP | 91.63 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 91.6 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 91.58 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 91.49 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 91.49 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 91.47 | |
| PLN02591 | 250 | tryptophan synthase | 91.35 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 91.34 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 91.31 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 91.26 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 91.09 | |
| PRK09432 | 296 | metF 5,10-methylenetetrahydrofolate reductase; Pro | 91.01 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.01 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 91.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 90.89 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 90.81 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 90.81 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 90.75 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 90.73 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 90.71 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 90.67 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 90.65 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 90.63 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 90.61 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 90.49 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 90.43 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 90.4 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 90.39 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 90.39 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 90.34 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 90.29 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 90.22 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 90.11 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 90.09 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 90.06 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 90.06 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 90.03 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 90.01 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 89.97 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 89.92 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 89.9 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 89.86 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 89.82 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 89.81 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 89.8 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 89.76 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 89.75 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 89.48 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 89.46 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 89.46 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 89.45 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 89.43 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 89.41 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 89.4 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 89.27 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 89.24 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 89.24 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 89.19 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 89.18 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 89.17 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 89.13 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 89.04 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 89.03 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 89.03 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 88.98 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 88.94 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 88.91 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 88.89 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 88.87 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 88.76 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 88.7 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 88.53 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 88.51 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 88.46 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 88.39 | |
| KOG2368 | 316 | consensus Hydroxymethylglutaryl-CoA lyase [Energy | 88.38 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 88.35 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 88.35 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 88.34 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 88.33 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 88.29 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 88.2 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 88.19 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 88.18 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 88.17 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 88.13 | |
| PRK00112 | 366 | tgt queuine tRNA-ribosyltransferase; Provisional | 88.11 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 88.1 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 87.98 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 87.97 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 87.92 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 87.91 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 87.86 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 87.82 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 87.79 | |
| COG1850 | 429 | RbcL Ribulose 1,5-bisphosphate carboxylase, large | 87.77 | |
| COG1609 | 333 | PurR Transcriptional regulators [Transcription] | 87.73 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 87.7 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 87.66 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 87.65 | |
| PRK08645 | 612 | bifunctional homocysteine S-methyltransferase/5,10 | 87.61 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 87.6 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 87.59 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 87.47 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 87.46 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 87.45 | |
| PRK07094 | 323 | biotin synthase; Provisional | 87.45 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 87.43 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 87.24 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 87.17 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 87.12 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 87.03 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 86.99 | |
| PLN02489 | 335 | homocysteine S-methyltransferase | 86.99 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 86.93 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 86.88 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 86.81 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 86.62 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 86.59 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 86.5 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 86.49 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 86.45 | |
| PF07302 | 221 | AroM: AroM protein; InterPro: IPR010843 This famil | 86.44 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 86.43 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 86.42 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 86.35 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 86.33 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 86.03 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 86.02 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 85.93 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 85.87 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 85.83 | |
| PLN02979 | 366 | glycolate oxidase | 85.77 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 85.77 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 85.76 | |
| TIGR00587 | 274 | nfo apurinic endonuclease (APN1). All proteins in | 85.64 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 85.6 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 85.55 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 85.55 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 85.53 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 85.36 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 85.33 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 85.23 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 85.07 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 85.02 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 85.01 | |
| cd01575 | 268 | PBP1_GntR Ligand-binding domain of DNA transcripti | 84.96 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 84.91 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 84.84 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 84.77 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 84.72 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 84.6 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 84.54 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 84.49 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 84.48 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 84.3 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 84.14 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 84.14 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 84.08 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 83.99 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 83.97 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 83.95 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 83.94 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 83.86 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 83.83 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 83.62 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 83.62 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 83.6 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 83.58 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 83.51 | |
| PF13407 | 257 | Peripla_BP_4: Periplasmic binding protein domain; | 83.46 | |
| cd06267 | 264 | PBP1_LacI_sugar_binding_like Ligand binding domain | 83.41 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 83.31 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.25 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 83.19 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 83.05 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 83.02 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 83.02 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 82.97 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 82.95 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 82.95 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 82.92 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 82.9 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 82.87 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 82.86 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 82.83 | |
| PLN02535 | 364 | glycolate oxidase | 82.8 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 82.77 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 82.67 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 82.62 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 82.62 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 82.58 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 82.53 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 82.36 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 82.33 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 82.32 | |
| TIGR00430 | 368 | Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin | 82.2 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 82.19 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 82.06 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 82.03 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 82.02 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 82.0 | |
| PRK12677 | 384 | xylose isomerase; Provisional | 81.73 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 81.65 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 81.52 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 81.34 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 81.33 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 81.26 | |
| TIGR00449 | 367 | tgt_general tRNA-guanine transglycosylases, variou | 81.06 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 81.04 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 81.03 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.9 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 80.85 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 80.84 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 80.83 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 80.75 | |
| PRK10528 | 191 | multifunctional acyl-CoA thioesterase I and protea | 80.73 | |
| TIGR02082 | 1178 | metH 5-methyltetrahydrofolate--homocysteine methyl | 80.69 | |
| PRK13475 | 443 | ribulose bisphosphate carboxylase; Provisional | 80.68 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 80.65 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 80.58 | |
| TIGR02637 | 302 | RhaS rhamnose ABC transporter, rhamnose-binding pr | 80.54 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 80.45 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 80.07 |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=505.02 Aligned_cols=278 Identities=40% Similarity=0.664 Sum_probs=259.7
Q ss_pred ccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 57 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 57 ~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++.|++++++|||++||+||+++++++++||++.|++||+++|||||+++||.+||+++++.++++++||+|||+|+|+
T Consensus 3 ~~~~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 3 AKFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred cccCcceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|+|++|++||||++++|+++++||++|+++ +|+|+||+|.+||++++++++.+|+++|||+|
T Consensus 83 ~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivg 162 (299)
T COG0329 83 NSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVG 162 (299)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-hHh---hhhCC-ceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHH
Q 018253 215 VKECVGND-RVE---HYTGN-GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLF 283 (359)
Q Consensus 215 iK~ss~d~-~l~---~~~~~-~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~ 283 (359)
+||+++|. ++. +...+ +|.+|+|.|+++++. +.+|++|+||+++|++|++++++|+ +|+ ++++|+++.
T Consensus 163 iKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~-~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~ 241 (299)
T COG0329 163 VKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALPA-LLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLL 241 (299)
T ss_pred EEeCCcCHHHHHHHHHhcCccCeeEEeCchHHHHHH-HhCCCCeEEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999994 333 33445 799999999999876 7799999999999999999999996 464 789999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHH-HHHHHHHcC
Q 018253 284 PLIEWLFQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKRAE-FVNLVNQIG 335 (359)
Q Consensus 284 ~l~~~l~~~~~~~~~K~al~~~G~~~g-~~R~Pl~~l~~e~~~~-i~~~l~~lg 335 (359)
|++++++..+++..+|++|+++|+..+ .+|+|+.++++++++. ++++++..+
T Consensus 242 ~l~~~~~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~~l~~~~~~~~~~~~~~~~~ 295 (299)
T COG0329 242 PLIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVLEAALAALG 295 (299)
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765 5999999999998888 777777654
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=500.52 Aligned_cols=279 Identities=82% Similarity=1.343 Sum_probs=264.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
|.+|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++++++|+|||+|++++
T Consensus 1 ~~~Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 1 KKLRLITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CCCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEec
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ 217 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++.|+++||+|++||++++++++++|+++|||+|||+
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKd 160 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKE 160 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999998669999999999999999999999999999999999
Q ss_pred cCchhhHhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCChHH
Q 018253 218 CVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIP 297 (359)
Q Consensus 218 ss~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~~l~~~~~~~~ 297 (359)
+++|.++.+...++|.||+|.|+.++...+.+|++|++|+++|++|+.++++|+++++.++|+++.+++++++..+++.+
T Consensus 161 ss~~~~~~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~a~~~~~l~~~l~~l~~~~~~~~~~~~ 240 (280)
T PLN02417 161 CTGNDRVKQYTEKGILLWSGNDDECHDARWDYGADGVISVTSNLVPGLMHKLMFAGKNKELNDKLLPLMDWLFCEPNPIG 240 (280)
T ss_pred CCCcHHHHHHhcCCeEEEEcccHHhhHHHHhCCCCEEEecHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 99985555555679999999999988754788999999999999999999999988778999999999998877777778
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 298 LNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 298 ~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+|++|+++|++.+.+|+|+.+++++++++|+++++++++
T Consensus 241 ~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 279 (280)
T PLN02417 241 LNTALAQLGLIRPVFRLPYVPLDLAKRAEFVALVKAIGR 279 (280)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999988888999999999999999999999875
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-66 Score=495.32 Aligned_cols=277 Identities=28% Similarity=0.480 Sum_probs=259.5
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.++||+|||+||++++
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~ 80 (294)
T TIGR02313 1 FRGSIAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALN 80 (294)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 214 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivG 214 (359)
|+++++++|+|+++|||++|++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|+ ++|||+|
T Consensus 81 t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~g 160 (294)
T TIGR02313 81 HDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVG 160 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999985 6999999999999999999999999 6999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
+|++++|. + +.+..+++|.+|+|.|+.+++. +.+|++|++|+++|++|++++++|+ +|+ ++++|.++.+
T Consensus 161 iK~ss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~ 239 (294)
T TIGR02313 161 AKESNKDFEHLNHLFLEAGRDFLLFCGIELLCLPM-LAIGAAGSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLE 239 (294)
T ss_pred EEeCCCCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHCCCCEEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999984 3 3333467999999999988875 8999999999999999999999997 465 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+++.++..+++..+|++|+++|+..+.+|+|+.+++++++++|+++++++++
T Consensus 240 ~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 291 (294)
T TIGR02313 240 ANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKYGK 291 (294)
T ss_pred HHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9997777777778999999999988889999999999999999999999875
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=486.64 Aligned_cols=277 Identities=25% Similarity=0.383 Sum_probs=258.8
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++||+++++|||++||+||+++++++++++++ .|++||+++|||||+++||.+||+++++.+++++++|+|||+|+++
T Consensus 3 ~~~Gv~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 3 NLKGVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCCceeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 478999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|||+++++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|+++|||+|
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvg 162 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIG 162 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 215 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 215 iK~ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
||++++|. ++.++ ..++|.+|+|.|+.++.. +..|++|++|+++|++|+.++++|+ +|+ ++++|+++.++
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~ 241 (293)
T PRK04147 163 VKQTAGDLYQLERIRKAFPDKLIYNGFDEMFASG-LLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDV 241 (293)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEEeehHHHHHH-HHcCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33222 235789999999998765 8999999999999999999999996 464 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
++.++..+++..+|++|+++|+..+.+|+|+.+++++++++|++++++++
T Consensus 242 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 291 (293)
T PRK04147 242 IDLLIKNGVYPGLKEILHYMGVDAGLCRKPFKPVDEKYLPALKALAAKYL 291 (293)
T ss_pred HHHHhhcCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99877777778899999999998889999999999999999999999875
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=488.21 Aligned_cols=277 Identities=33% Similarity=0.524 Sum_probs=252.6
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++||+++++|||++||+||++++++++++++++|++|++++|||||+++||.+||+++++.+++++++|+|||+||++.
T Consensus 1 ~~~Gi~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 1 MLKGIFPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp GGSEEEEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred CCCCeeeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
||+++++++++|+++|||++|++||||+++|++++++||++|+++ .||++||+|.+||.++|++++.+|+++|||+|+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~gi 160 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGI 160 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEE
Confidence 999999999999999999999999999999999999999999987 699999999999999999999999999999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|.+++. .+..|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 K~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~-~l~~G~~G~is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~ 239 (289)
T PF00701_consen 161 KDSSGDLERLIQLLRAVGPDFSVFCGDDELLLP-ALAAGADGFISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPL 239 (289)
T ss_dssp EESSSBHHHHHHHHHHSSTTSEEEESSGGGHHH-HHHTTSSEEEESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EcCchhHHHHHHHhhhcccCeeeeccccccccc-cccccCCEEEEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHH
Confidence 9999984 3 334457899999999888775 58999999999999999999999996 475 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
++.+...+++.++|++|+++|+..+.+|+|+.+++++++++|+++|+++|
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 289 (289)
T PF00701_consen 240 REALFSGGNIAAIKYALELRGLIAGPVRPPLLPLSDEEKEELKEILKEAG 289 (289)
T ss_dssp HHHHTSSSTTHHHHHHHHHTTSSSSB--TTS-SS-HHHHHHHHHHHHHTT
T ss_pred HHHHHccCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 99998888899999999999999888999999999999999999999986
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=481.20 Aligned_cols=273 Identities=40% Similarity=0.656 Sum_probs=256.0
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
||+++++|||++||+||+++++++++|+++.||+|++++|||||+++||.+||+++++.+++.+++|+||++|+++.|++
T Consensus 1 Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~ 80 (285)
T TIGR00674 1 GVITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATE 80 (285)
T ss_pred CccCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s 218 (359)
++++++++|+++|+|++|++||+|++++++++++||++|+++ +||++||+|.+||++++++++++|+++|||+|+|++
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s 160 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEA 160 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeC
Confidence 999999999999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred Cchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHH
Q 018253 219 VGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEW 288 (359)
Q Consensus 219 s~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~ 288 (359)
++|. + +.+..+++|.+|+|.|++++.. +.+|++|++++++|++|++++++|+ +|+ +.++|+++.+++++
T Consensus 161 ~~d~~~~~~l~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~ 239 (285)
T TIGR00674 161 TGNLERISEIKAIAPDDFVVLSGDDALTLPM-MALGGKGVISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKA 239 (285)
T ss_pred CCCHHHHHHHHHhcCCCeEEEECchHHHHHH-HHcCCCEEEehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9984 3 3334456899999999888865 8999999999999999999999996 465 67899999999998
Q ss_pred HhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 289 l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
++..+++..+|++|+.+|++.|.+|+|+.+++++++++|+++++++
T Consensus 240 ~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~l~~~ 285 (285)
T TIGR00674 240 LFIETNPIPVKTALALLGLIEGELRLPLTELSEEHRNKLRDVLKDL 285 (285)
T ss_pred HhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 7777777789999999999888999999999999999999999864
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=478.71 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=255.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+.||+++++|||++||+||+++++++++|+++.| ++||+++|||||+++||.+||+++++.+++.+++|+|||+|+++.
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 80 (290)
T TIGR00683 1 LKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 80 (290)
T ss_pred CCCeEeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4799999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++|+|+++|||++|++||||++++++++++||++|+++ +|+++||+|++||++++++++.+|+++|||+|
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~g 160 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLG 160 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999874 69999999999999999999999999999999
Q ss_pred EeccCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 215 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 215 iK~ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
||++++|. ++.++ ..++|.||+|.|+.++.. +.+|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~ 239 (290)
T TIGR00683 161 VKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDL 239 (290)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEECchHHHHHH-HHCCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33322 135799999999998875 8899999999999999999999996 465 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCC-CCHHHHHHHHHHHHHc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVP-LPQEKRAEFVNLVNQI 334 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~-l~~e~~~~i~~~l~~l 334 (359)
++.++..+++..+|++|+++|+..+.+|+|+.+ +++|+++.+++.++++
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~~~~~~~~~~~~~~~~~~ 289 (290)
T TIGR00683 240 IEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATPEQKAKAKDLKAKF 289 (290)
T ss_pred HHHHhhcCCCHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhc
Confidence 998877777778999999999988899999997 9999999999999874
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=477.88 Aligned_cols=274 Identities=24% Similarity=0.358 Sum_probs=256.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
++||+++++|||++||+||+++++++++|+++. |++|++++|||||+++||.+||+++++.+++++++++|||+|+++.
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 1 LKGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CCCeeeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++++|+++|||++|++||+|++++++++++||++|+++ +||++||+|.+||++++++++.+|+++|||+|
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivg 160 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIG 160 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999986 49999999999999999999999999999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+..+++|.+|+|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.+
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~ 239 (288)
T cd00954 161 VKFTATDLYDLERIRAASPEDKLVLNGFDEMLLSA-LALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVIND 239 (288)
T ss_pred EEeCCCCHHHHHHHHHhCCCCcEEEEechHHHHHH-HHcCCCEEEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999984 2 3333355899999999988765 8899999999999999999999996 465 5789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~ 333 (359)
+++.+...+++..+|++|+++|+..|.+|+|+.+++++++++|++++++
T Consensus 240 ~~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~~~~ 288 (288)
T cd00954 240 VITVLIKNGLYPTLKAILRLMGLDAGPCRLPLRKVTEKALAKAKELAAK 288 (288)
T ss_pred HHHHHhccCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHhhC
Confidence 9998777777888999999999988899999999999999999998874
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=477.27 Aligned_cols=278 Identities=39% Similarity=0.633 Sum_probs=260.1
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++|+||++|+++.+
T Consensus 2 ~~Gv~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 2 FGGSITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++|+|+++|+|++|++||+|++++++++++||++|+++ +|+++||+|..+|+.+|++++++|+++|||+|+|
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|.|.|+.++.. +.+|++|++|+++|++|++++++|+ +|+ ++++|+++.+++
T Consensus 162 ~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~ 240 (292)
T PRK03170 162 EATGDLERVSELIELVPDDFAVYSGDDALALPF-LALGGVGVISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLH 240 (292)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEECChHhHHHH-HHcCCCEEEEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3333456899999999988764 8899999999999999999999996 465 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++++.
T Consensus 241 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~l~~~~~~ 291 (292)
T PRK03170 241 KALFIEPNPIPVKAALNLLGLIEGELRLPLVPLSEEEKEKLRAALKEAGLL 291 (292)
T ss_pred HHHhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 987777777889999999999878899999999999999999999998864
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=468.65 Aligned_cols=273 Identities=22% Similarity=0.319 Sum_probs=248.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.++||+++++|||++||+||+++++++++++++.||+|++++|||||+++||.+||+++++.+++++++|+|||+||++
T Consensus 5 ~~~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~- 83 (296)
T TIGR03249 5 AGSGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG- 83 (296)
T ss_pred ccCceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++|| ++|++++++++.+|++ +|||+|
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~~l~~~~~~~La~~~~nvvg 160 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNAVLNADTLERLADRCPNLVG 160 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCCCCCHHHHHHHHhhCCCEEE
Confidence 799999999999999999999999999999999999999999997 6999999 6799999999999995 999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecC---CchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHH-
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT- 280 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~- 280 (359)
||++++|. + +.+..+++|.||+|. |..++. .+.+|++|++++++|++|++++++|+ +|+ ++++|+
T Consensus 161 iKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~-~~~~Ga~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l~~~ 239 (296)
T TIGR03249 161 FKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPA-YLPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKE 239 (296)
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHH-HHhCCCCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999984 3 333346789999997 555555 48899999999999999999999986 465 567766
Q ss_pred HHHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 281 KLFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 281 ~l~~l~~~l~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
.+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|+++++++|
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 296 (296)
T TIGR03249 240 FILPINEIRNRKKGYAVSIIKAGMEIVGLPAGPVRPPLTDLTKEEYAQLEVILKKAG 296 (296)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 5899998765 323 356799999999998889999999999999999999999875
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=464.16 Aligned_cols=272 Identities=42% Similarity=0.671 Sum_probs=254.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++||++|+++.|
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCeeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
++++++++++|+++|+|++|++||+|++++++++++||++|+++ +||++||+|.++|+.+|++++++|+++|||+|+|
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999996 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|+|.|+.++.. +..|++|++++++|++|++++++|+ +|+ +.++|+++.+++
T Consensus 161 ~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~ 239 (284)
T cd00950 161 EATGDLDRVSELIALCPDDFAVLSGDDALTLPF-LALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239 (284)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEeCChHhHHHH-HHCCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999883 3 3344467999999999887764 8899999999999999999999996 464 578999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l 331 (359)
++++..+++..+|++|+++|+..+.+|+|+.+++++++++|++.|
T Consensus 240 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~~ 284 (284)
T cd00950 240 KALFAEPNPIPVKAALALLGLISGELRLPLVPLSEELRAKLRAAL 284 (284)
T ss_pred HHHhcCCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHhC
Confidence 988777777889999999999888999999999999999999764
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=461.28 Aligned_cols=269 Identities=40% Similarity=0.650 Sum_probs=251.9
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++|||+|+++.++++
T Consensus 1 i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ 80 (281)
T cd00408 1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE 80 (281)
T ss_pred CCCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV 219 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss 219 (359)
+++++++|+++|+|++|++||+|++++++++++||++|+++ .|+++||+|.+||+.++++++.+|+++|||+|+|+++
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~ 160 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS 160 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999996 7999999999999999999999999999999999999
Q ss_pred chh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHHH
Q 018253 220 GND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEWL 289 (359)
Q Consensus 220 ~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~l 289 (359)
+|. + +.+..+++|.+|+|.|.+++.. +..|++|++++++|++|++++++|+ +|+ ++++|+++.++++.+
T Consensus 161 ~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (281)
T cd00408 161 GDLDRLTRLIALLGPDFAVLSGDDDLLLPA-LALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL 239 (281)
T ss_pred CCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHcCCCEEEehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 883 3 3344467999999999888764 8999999999999999999999996 454 678999999999988
Q ss_pred hcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018253 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331 (359)
Q Consensus 290 ~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l 331 (359)
...+++..+|++|+++|+..+.+|+|+.+++++++++|++++
T Consensus 240 ~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~~ 281 (281)
T cd00408 240 FKEGNPAPVKAALALLGLDAGPVRLPLVPLSEEERAKLEALL 281 (281)
T ss_pred hcCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHhC
Confidence 877788889999999999889999999999999999998763
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-61 Score=461.75 Aligned_cols=274 Identities=24% Similarity=0.321 Sum_probs=246.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++||+++++|||++||+||+++++++++|++++||+||+++|||||+++||.+||+++++.+++.+++|+|||+|+++
T Consensus 7 ~~~Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~- 85 (303)
T PRK03620 7 LGSGLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG- 85 (303)
T ss_pred CcCceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||.| |++++++++.+|+ ++|||+|
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~---g~~l~~~~l~~L~~~~pni~g 162 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD---NAVLTADTLARLAERCPNLVG 162 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC---CCCCCHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999999999999999999999997 799999954 7899999999999 8999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCC--chhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHH-H
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGND--DQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT-K 281 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d--~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~-~ 281 (359)
||++++|. + +.+..+++|.||+|.| +..+...+.+|++|++++++|++|++++++|+ +|+ ++++++ .
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 242 (303)
T PRK03620 163 FKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDF 242 (303)
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999984 3 3334467999999984 33433457899999999999999999999996 465 456754 5
Q ss_pred HHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 282 LFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 282 l~~l~~~l~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|++++++++
T Consensus 243 ~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 298 (303)
T PRK03620 243 FLPYVALRNRKKGYAVSIVKAGARLVGLDAGPVRAPLTDLTPEELAELAALIAKGG 298 (303)
T ss_pred HHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 789988654 223 367799999999998889999999999999999999999876
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=461.14 Aligned_cols=273 Identities=20% Similarity=0.215 Sum_probs=247.2
Q ss_pred CCceEEeeecCCCCC-------CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEE
Q 018253 59 ALRLITAIKTPYLPD-------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 59 ~~Gi~~al~TPF~~d-------g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVi 131 (359)
++||+++++|||++| |+||++++++++++++++||+||+++|||||+++||.+||+++++.+++.+++|+|||
T Consensus 2 ~~Gv~~~~~TPf~~~~~~~~~~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi 81 (309)
T cd00952 2 IKGVWAIVPTPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVF 81 (309)
T ss_pred CCceEeeeccCccCCccccccCCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 689999999999985 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+|+++++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|++
T Consensus 82 ~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 82 VGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred EEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred CCCeEEEeccCchh-hH---hhhhCCceEEEecCCchhhhhhhhcCC---ceeecccccccHHHHHHHHH---cCC---c
Q 018253 209 SPNLAGVKECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGA---TGVISVTSNLVPGMMRELMF---GGK---N 275 (359)
Q Consensus 209 ~pnivGiK~ss~d~-~l---~~~~~~~~~v~~G~d~~~~~~~l~~Ga---~G~is~~an~~P~l~~~l~~---ag~---a 275 (359)
+|||+|||+++ |. ++ .+..+++|.||+|.|++ +.. +..|+ +|++++++|++|++++++|+ +|+ +
T Consensus 162 ~pnivgiKdss-d~~~~~~~i~~~~~~~~v~~g~d~~-l~~-~~~~~~~~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A 238 (309)
T cd00952 162 IPQVVAAKYLG-DIGALLSDLAAVKGRMRLLPLEDDY-YAA-ARLFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDA 238 (309)
T ss_pred CCCEEEEEecC-ChHHHHHHHHHcCCCeEEeecchhH-HHH-HHhcCccCccEEEeccccCcHHHHHHHHHHHcCCHHHH
Confidence 99999999999 73 33 33345799999999985 444 44554 59999999999999999997 465 6
Q ss_pred HHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 276 PSLNTKLFPLIEWLFQEP--------NPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 276 ~~l~~~l~~l~~~l~~~~--------~~~~~K~al~~~G~-~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
+++|+++.++++.++..+ ++..+|++|+++|+ ..+.+|+|+.++++++++++|+--+++
T Consensus 239 ~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~~~~~~~~~~~~~~~~~ 306 (309)
T cd00952 239 RALTDRMRWAAEPLFPRGDFSEFSKYNIALEKARFDAAGYMRAGPARPPYNTAPEAYLEGARESGRRW 306 (309)
T ss_pred HHHHHHHHHHHHHHhccCccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence 789999999998776442 24568999999997 678899999999999999999887764
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=455.34 Aligned_cols=269 Identities=25% Similarity=0.321 Sum_probs=246.7
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
.|+++|++|||++ |+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.++ + ||+||++.+|
T Consensus 2 ~~v~~a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~ 77 (279)
T cd00953 2 PDKITPVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNL 77 (279)
T ss_pred CCcccceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCH
Confidence 5899999999998 9999999999999999999999999999999999999999999999999874 4 8999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEec
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE 217 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ 217 (359)
+++++++|+|+++|||++|++||||++ ++++++++||++|++.+|+++||+|.+||++++++++.+|++ +|||+|||+
T Consensus 78 ~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~ 157 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKD 157 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEe
Confidence 999999999999999999999999988 589999999999999779999999999999999999999995 799999999
Q ss_pred cCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhc
Q 018253 218 CVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG---KNPSLNTKLFPLIEWLFQ 291 (359)
Q Consensus 218 ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag---~a~~l~~~l~~l~~~l~~ 291 (359)
+++|. ++.++ ..++|.||+|.|+.+++. +..|++|++++++|++|++++++|++. +++++|+++.++++.+..
T Consensus 158 s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~i~~~~n~~P~~~~~l~~a~~~~~a~~~q~~~~~l~~~~~~ 236 (279)
T cd00953 158 TNEDISHMLEYKRLVPDFKVYSGPDSLIFSA-LRSGLDGSVAAASNYLPEVFVKIKDHVAIEDAFKLQFLINEVLDASRK 236 (279)
T ss_pred CccCHHHHHHHHHhCCCeEEEEccHHHHHHH-HHcCCCeEEechhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99984 33332 235899999999988865 899999999999999999999999864 577899999999997766
Q ss_pred CCChHHHHHHHH-HcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018253 292 EPNPIPLNTALA-QLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333 (359)
Q Consensus 292 ~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~ 333 (359)
.+++..+|++++ ++|+..|.+|+|+.+++++++++|++++++
T Consensus 237 ~~~~~~~k~~~~~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 279 (279)
T cd00953 237 YGSWSANYSLVKIFQGYDAGEPRPPFYPLDEEEEEKLRKEVNE 279 (279)
T ss_pred cCCcHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhhC
Confidence 667777999997 699988899999999999999999998864
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-60 Score=452.29 Aligned_cols=268 Identities=23% Similarity=0.308 Sum_probs=242.8
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+||+++++|||++||+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.+++|+|||+|++. +|
T Consensus 2 ~Gi~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t 80 (289)
T cd00951 2 SGLLSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GT 80 (289)
T ss_pred CCeEEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
+++++++++|+++|+|++|++||||++++++++++||++|+++ +||++||. +|++++++++.+|++ +|||+|+|
T Consensus 81 ~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiK 157 (289)
T cd00951 81 ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFK 157 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999999999999999999999997 79999994 688999999999997 99999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecC---CchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHH-HHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL-NTKL 282 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l-~~~l 282 (359)
++++|. + +.+..+++|.||+|. |.+++. .+.+|++|++++++|++|++++++|+ +|+ +.++ ++++
T Consensus 158 ds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~-~l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~ 236 (289)
T cd00951 158 DGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALA-YLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFF 236 (289)
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHH-HHHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999983 3 333345689999997 555665 48999999999999999999999986 465 4566 5568
Q ss_pred HHHHHHHhc-CC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018253 283 FPLIEWLFQ-EP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVN 332 (359)
Q Consensus 283 ~~l~~~l~~-~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~ 332 (359)
.++++.+.. .. ++..+|++|+++|+..|.+|+|+.+++++++++|+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~ 288 (289)
T cd00951 237 LPYVDIRNRRKGYAVSIVKAGARLVGRDAGPVRPPLTDLTEEELAQLTALIK 288 (289)
T ss_pred HHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 899887632 23 467799999999998889999999999999999999875
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=192.54 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=147.3
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCC---
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNS--- 138 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~s--- 138 (359)
+.++.+|+. |++.++++++++++.|++|++++| ++++.+++..++ ++||++|+++.+
T Consensus 2 ~~~~~~~~~-----d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~ 62 (201)
T cd00945 2 DLTLLHPDA-----TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLT 62 (201)
T ss_pred cccccCCCC-----CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCC
Confidence 456667765 999999999999999999999998 888889998888 999999999999
Q ss_pred -HHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--HHHHHHHHHHHHhc----CCeEEEeCCCCCCCCCCHHHHHHH---hc
Q 018253 139 -TREAIHATEQGFAVGMHAALHINPYYGKTS--LEGLISHFDSVLSM----GPTIIYNVPSRTGQDIPPRVIHTM---AQ 208 (359)
Q Consensus 139 -t~~ai~la~~a~~~Gadav~v~pP~y~~~s--~~~l~~yf~~Ia~a----~PiiiYn~P~~tg~~ls~e~l~~L---a~ 208 (359)
++++++++++|+++|||++++.+|+|+.++ ++++.+||++++++ .|+++||+|..+ ++++.+.++ ++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---~~~~~~~~~~~~~~ 139 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIAA 139 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---CCHHHHHHHHHHHH
Confidence 999999999999999999999999998887 89999999999975 699999999877 678877776 45
Q ss_pred CCCeEEEeccCc------hh-h---HhhhhC--CceEEEecCC--chhhhhhhhcCCceeecc
Q 018253 209 SPNLAGVKECVG------ND-R---VEHYTG--NGIVVWSGND--DQCHDARWNHGATGVISV 257 (359)
Q Consensus 209 ~pnivGiK~ss~------d~-~---l~~~~~--~~~~v~~G~d--~~~~~~~l~~Ga~G~is~ 257 (359)
.+++.++|++++ +. + +.+..+ -+|.++.|.+ +.+.. .+..|++|++.+
T Consensus 140 ~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~-~~~~Ga~g~~~g 201 (201)
T cd00945 140 EAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALA-AIEAGADGIGTS 201 (201)
T ss_pred HhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHH-HHHhccceeecC
Confidence 899999999988 62 2 333332 2677788888 66665 588999999864
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=195.94 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=160.6
Q ss_pred cCCcccc-cCCceE--EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--
Q 018253 51 RTSAEDI-KALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-- 125 (359)
Q Consensus 51 ~~~~~~~-~~~Gi~--~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-- 125 (359)
++..+.+ ++.|+. |.+.|||++++.+|.+.+.++++++++.|+|+|...|++||+.+|+.+||.++++.+++.++
T Consensus 115 ~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~ 194 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEE 194 (367)
T ss_pred CCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHh
Confidence 3444443 244543 68999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCcE-EEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHH--------HHHHH-----------------
Q 018253 126 -ASVK-VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI--------SHFDS----------------- 178 (359)
Q Consensus 126 -grvp-Viagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~--------~yf~~----------------- 178 (359)
|+.+ ++++++ .+++|+++++++|+++|+|++|+.+|+|+..+.+.+. .|+..
T Consensus 195 TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~ 273 (367)
T cd08205 195 TGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLL 273 (367)
T ss_pred hCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEccCcccccccCCCCcCCHHHH
Confidence 5544 455555 5679999999999999999999999999865544444 44444
Q ss_pred --HHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEecc----Cc--hh----hHhhhhCCceEEEecCCchh
Q 018253 179 --VLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--ND----RVEHYTGNGIVVWSGNDDQC 242 (359)
Q Consensus 179 --Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~s----s~--d~----~l~~~~~~~~~v~~G~d~~~ 242 (359)
+++. .|+++||+|. .++.++++.+.++++ .+++.++|.+ ++ +. ++.+..++++.++.|.+-+-
T Consensus 274 ~kl~RlaGad~~~~~~~~-gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~g 352 (367)
T cd08205 274 GKLMRLAGADAVIFPGPG-GRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHPGRVPELYRDYGPDVILLAGGGILG 352 (367)
T ss_pred HHHHHHcCCCccccCCCc-cCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCHHHHHHHHHHhCCcEEEEcCchhcC
Confidence 5664 6999999996 489999999999996 7999999997 42 21 34455678999999987666
Q ss_pred hhhhhhcCCc
Q 018253 243 HDARWNHGAT 252 (359)
Q Consensus 243 ~~~~l~~Ga~ 252 (359)
++.....|+.
T Consensus 353 Hp~g~~ag~~ 362 (367)
T cd08205 353 HPDGAAAGVR 362 (367)
T ss_pred CCCChHHHHH
Confidence 6654555543
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=141.17 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=128.0
Q ss_pred cCCcccc--cCCceEEeeecCCCCCCCC---CHHHHHHHHHHHHHCCCCEEEE--------ccCccCcCCCCHHHHHHHH
Q 018253 51 RTSAEDI--KALRLITAIKTPYLPDGRF---DLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLI 117 (359)
Q Consensus 51 ~~~~~~~--~~~Gi~~al~TPF~~dg~I---D~~~l~~li~~li~~Gv~Gl~v--------~GstGE~~~LT~~Er~~li 117 (359)
..++++| ..++|..+..+|+..|.+. |.+.+.+.++++++.|++|+.+ +|++||...+|.+|+.+.+
T Consensus 51 ~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki 130 (243)
T cd00377 51 LLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKI 130 (243)
T ss_pred cCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHH
Confidence 3455554 3677999999999999888 9999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhCC--CcEEEEe-----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 118 GHTVNCFGA--SVKVIGN-----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 118 ~~~v~~~~g--rvpViag-----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
+.+++...+ +++|+++ ++..+++++|++++.++++|||++++.+|. +. +++++++++ .|+++|
T Consensus 131 ~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~----~~----~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 131 KAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK----DP----EEIRAFAEAPDVPLNVN 202 (243)
T ss_pred HHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC----CH----HHHHHHHhcCCCCEEEE
Confidence 999999887 8999999 665789999999999999999999998887 33 677777776 799999
Q ss_pred eCCCCCCCCCCHHHHHHH
Q 018253 189 NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 189 n~P~~tg~~ls~e~l~~L 206 (359)
+.|... .++++.+.+|
T Consensus 203 ~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 203 MTPGGN--LLTVAELAEL 218 (243)
T ss_pred ecCCCC--CCCHHHHHHC
Confidence 988532 5888888887
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=145.01 Aligned_cols=186 Identities=10% Similarity=0.135 Sum_probs=152.8
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC----CCcEEEEecC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG----ASVKVIGNTG 135 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~----grvpViagvg 135 (359)
+.++..++=| . -+|.+.+.+++.++...|+|+|-..+++||..+++.+||.+.+..+++.+. ++++++++++
T Consensus 126 rPl~~tiiKP---~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit 201 (364)
T cd08210 126 RPLLCSALKP---Q-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT 201 (364)
T ss_pred CceEEEEecc---c-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC
Confidence 3366666655 3 499999999999999999999999999999999999999999999998776 7899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----CCCHHHH----HHH-------------------HHHHHhc--CCe
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTSLEGL----ISH-------------------FDSVLSM--GPT 185 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~-----~~s~~~l----~~y-------------------f~~Ia~a--~Pi 185 (359)
+. +.|.+++++.|+++|++++|+.++.|+ ..+.+.. ..| |.++++. .|+
T Consensus 202 a~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~ 280 (364)
T cd08210 202 GP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADA 280 (364)
T ss_pred CC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCE
Confidence 86 669999999999999999999999886 3444444 445 7888875 699
Q ss_pred EEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEecc----Cc--h----hhHhhhhCCceEEEecCCchhhhhhhhcCC
Q 018253 186 IIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--N----DRVEHYTGNGIVVWSGNDDQCHDARWNHGA 251 (359)
Q Consensus 186 iiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~s----s~--d----~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga 251 (359)
++||+|. .++.++++.+.++++ .+++.++|.+ |+ + .++.+..++++.++.|.+-+-++.....|+
T Consensus 281 ~~~~~~~-g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~ 357 (364)
T cd08210 281 VIFPNYG-GRFGFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENT 357 (364)
T ss_pred EEeCCCc-CCccCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHH
Confidence 9999995 589999999999996 6889999997 42 2 134455678899999987666655444544
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=121.71 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=121.7
Q ss_pred CCcccc--cCCceEEeeecC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE-----------ccCccCcCCCCHHHHHHH
Q 018253 52 TSAEDI--KALRLITAIKTP--YLPDGRFDLEAYDDLVNMQIVNGAEGMIV-----------GGTTGEGQLMSWDEHIML 116 (359)
Q Consensus 52 ~~~~~~--~~~Gi~~al~TP--F~~dg~ID~~~l~~li~~li~~Gv~Gl~v-----------~GstGE~~~LT~~Er~~l 116 (359)
.+++++ ..++|..++.+| +|.|+-.|...+.+.++++++.|+.|+.+ +|+.||...+|.+|+.+.
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 444443 478899999999 77664499999999999999999999999 889999999999999999
Q ss_pred HHHHHHh-hCCCcEEEEe----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh---cCCeEEE
Q 018253 117 IGHTVNC-FGASVKVIGN----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS---MGPTIIY 188 (359)
Q Consensus 117 i~~~v~~-~~grvpViag----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~---a~PiiiY 188 (359)
++.+++. .+++++|++. +...+++++|++++.++++|||++++. +...+.+++.++++++.. ..|+++
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~~~~~~~~~p~~pl~~- 216 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH---SRKKDPDEILEFARRFRNHYPRTPLVI- 216 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHHHHHhhhhCCCCCEEE-
Confidence 9999987 5678999999 445679999999999999999999996 334689999999999875 358764
Q ss_pred eCCCCCCCCCCHHHHHHH
Q 018253 189 NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 189 n~P~~tg~~ls~e~l~~L 206 (359)
+ |..++ .++.+.+.+|
T Consensus 217 ~-~~~~~-~~~~~eL~~l 232 (285)
T TIGR02320 217 V-PTSYY-TTPTDEFRDA 232 (285)
T ss_pred e-cCCCC-CCCHHHHHHc
Confidence 2 43222 3566666665
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=76.85 Aligned_cols=260 Identities=17% Similarity=0.207 Sum_probs=152.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCC--------CHHHHH-
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN--------STREAI- 143 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~--------st~~ai- 143 (359)
-.||+++.-++-++|-+.|..--=..-|.--+.-|.+..-++|++...++++. .-.|.+|+|.. +.++.+
T Consensus 53 aaiDWd~TlafR~~Lw~~GLgVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~~~~~sld~V~~ 132 (382)
T PF06187_consen 53 AAIDWDATLAFRRHLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSAAEARAVGARIACGAGTDQLDPAPAASLDDVIA 132 (382)
T ss_dssp --B-HHHHHHHHHHHHHTT-EEEET-GGGTBTTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS---TT--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHccchHHHHhhhhhhcCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCCCCCCCHHHHHH
Confidence 46999999999999999996544445566667789999999999999887652 23577787722 334333
Q ss_pred ---HHHHHHHhCCCCEEEEcCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeC-----CCCCCCC----C--CHHHHHH
Q 018253 144 ---HATEQGFAVGMHAALHINPYYG--KTSLEGLISHFDSVLSM--GPTIIYNV-----PSRTGQD----I--PPRVIHT 205 (359)
Q Consensus 144 ---~la~~a~~~Gadav~v~pP~y~--~~s~~~l~~yf~~Ia~a--~PiiiYn~-----P~~tg~~----l--s~e~l~~ 205 (359)
|+....++.|+..|+...-... ..++++..+-|.+|.+. .|||++=. |...|+- + ..+++.+
T Consensus 133 AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~ 212 (382)
T PF06187_consen 133 AYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVLE 212 (382)
T ss_dssp HHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHHH
Confidence 4666778899876665433222 25789999999999875 69998753 6666662 2 2467777
Q ss_pred Hh-cC-CCeEEEeccCchh----hHhhhhCCceEEEecCCchhhhhhhhcC-----CceeecccccccHHHHHHHH--Hc
Q 018253 206 MA-QS-PNLAGVKECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHG-----ATGVISVTSNLVPGMMRELM--FG 272 (359)
Q Consensus 206 La-~~-pnivGiK~ss~d~----~l~~~~~~~~~v~~G~d~~~~~~~l~~G-----a~G~is~~an~~P~l~~~l~--~a 272 (359)
|. ++ +.|-|||.|.-|. .+++....++++|+|+|- -++. |..| .+...+...-+.|.....+- .+
T Consensus 213 lI~~~~~kVdGIKiSLLD~~~Ei~lRrrLP~gVr~YTGDDF-nYpe-LI~GD~~g~S~ALLGIFdaiAPaAsaAl~~Ld~ 290 (382)
T PF06187_consen 213 LIAAHADKVDGIKISLLDAEKEIALRRRLPEGVRMYTGDDF-NYPE-LIAGDGQGHSHALLGIFDAIAPAASAALAALDA 290 (382)
T ss_dssp HHHHTGGGEEEEEEES--HHHHHHHHTS--TT-EEEE--TT-THHH-HHH--SS---EEEESHHHHTHHHHHHHHHHHHT
T ss_pred HHHhChhhcCeeEecccCcHHHHHHHHhCCccceeecCCCc-CcHH-HhcCCCCCccHHHhhcchhhchHHHHHHHHHhC
Confidence 76 44 6899999999883 456666889999999864 4455 7788 67677766778888877765 47
Q ss_pred CCcH---HHHHHHHHHHHHHhcCCChHHHHH----HHHHcCCCCCCCCCCC---CCCCHHHHHHHHHHHHHcCcc
Q 018253 273 GKNP---SLNTKLFPLIEWLFQEPNPIPLNT----ALAQLGVVRPVFRLPY---VPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 273 g~a~---~l~~~l~~l~~~l~~~~~~~~~K~----al~~~G~~~g~~R~Pl---~~l~~e~~~~i~~~l~~lgl~ 337 (359)
|+.. ++.+--.||-..+|..|.. .+|. ..++-|.-. ..+..- ..=+-....++-++..+.|+.
T Consensus 291 gd~~~f~~il~pTvpLsRhiF~aPT~-~YKtGvvFLAwLnGhQ~-hF~MvgG~qsaRs~~hla~~frLAD~agll 363 (382)
T PF06187_consen 291 GDTAGFRAILDPTVPLSRHIFRAPTR-YYKTGVVFLAWLNGHQD-HFTMVGGLQSARSLPHLAELFRLADQAGLL 363 (382)
T ss_dssp T-HHHHHHHHTTHHHHHHHHT-SSGG-GHHHHHHHHHHHTTSSS-----GGGGGGSS-HHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHhccchHhHHHhhcCCch-hhhhhHHHHHHHcCCCc-cceecCccccccchHHHHHHHHHHhhhCCC
Confidence 7643 5556666888888876532 2343 334445421 122211 111233456666666776654
|
; PDB: 4DNH_A. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=61.59 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC---ccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCC-----CCHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT---TGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS-----NSTREAIHATE 147 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs---tGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~-----~st~~ai~la~ 147 (359)
|.....+.++.+++.|+.|+.+=-. .+....++.+|..+=++.+++.... +.-|++=+-+ .+.+|+|++++
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~ 162 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAK 162 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHH
Confidence 4889999999999999999998433 3777788999999999999997653 4556665544 46899999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
.+.++|||++++..+ .+.+++.++-+++ ..|+.+--.| ..++.+.+.+|
T Consensus 163 aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~v~~~~----~~~~~~eL~~l 211 (238)
T PF13714_consen 163 AYAEAGADMIFIPGL----QSEEEIERIVKAV--DGPLNVNPGP----GTLSAEELAEL 211 (238)
T ss_dssp HHHHTT-SEEEETTS----SSHHHHHHHHHHH--SSEEEEETTS----SSS-HHHHHHT
T ss_pred HHHHcCCCEEEeCCC----CCHHHHHHHHHhc--CCCEEEEcCC----CCCCHHHHHHC
Confidence 999999999998655 5677777777777 3786665433 24888888877
|
... |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=61.83 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=92.1
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEE--------ccCccCcCCCCHHHHHHHHHHHHHhhCC-CcE
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVK 129 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v--------~GstGE~~~LT~~Er~~li~~~v~~~~g-rvp 129 (359)
|.-++-.|...| |==|.....+.++.+++.|+.|+.+ ||..+.-...+.+|..+-++.+++...+ +.-
T Consensus 73 I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~ 152 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFV 152 (292)
T ss_pred HHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeE
Confidence 333444455443 3238899999999999999999998 4544444567999999999999886543 233
Q ss_pred EEEecC---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE--EeCCCCCCCCCCHHHHH
Q 018253 130 VIGNTG---SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII--YNVPSRTGQDIPPRVIH 204 (359)
Q Consensus 130 Viagvg---~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii--Yn~P~~tg~~ls~e~l~ 204 (359)
|++=+- ....+|+|++++.++++|||.+++..| .+.+++.++-+.+ ..|++. ...+ .+ -.++.+.+.
T Consensus 153 IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~~n~~~~~-~~-p~~s~~~L~ 224 (292)
T PRK11320 153 IMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM----TELEMYRRFADAV--KVPILANITEFG-AT-PLFTTEELA 224 (292)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC----CCHHHHHHHHHhc--CCCEEEEeccCC-CC-CCCCHHHHH
Confidence 444332 235899999999999999999998643 3667766655544 268633 2222 11 135666666
Q ss_pred HH
Q 018253 205 TM 206 (359)
Q Consensus 205 ~L 206 (359)
+|
T Consensus 225 ~l 226 (292)
T PRK11320 225 SA 226 (292)
T ss_pred Hc
Confidence 65
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0059 Score=58.80 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=87.3
Q ss_pred ecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEc--------cCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEec
Q 018253 67 KTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVG--------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNT 134 (359)
Q Consensus 67 ~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~--------GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagv 134 (359)
-.|...| |==+.....+.++.+++.|+.|+.+= |..+--...+.+|..+-++.+++...+ +.-|++=+
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 3455433 43457888899999999999999984 443333456999999999999886653 23333433
Q ss_pred C---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE--EeCCCCCCCCCCHHHHHHH
Q 018253 135 G---SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII--YNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 135 g---~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii--Yn~P~~tg~~ls~e~l~~L 206 (359)
- ....+++|++++.+.++|||.+++.. ..+.+++.++-+++- .|+++ ...+ .+ -.++.+.+.+|
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g----~~~~e~i~~~~~~i~--~Pl~~n~~~~~-~~-p~~s~~eL~~l 221 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEA----LTSLEEFRQFAKAVK--VPLLANMTEFG-KT-PLFTADELREA 221 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCC----CCCHHHHHHHHHhcC--CCEEEEeccCC-CC-CCCCHHHHHHc
Confidence 2 23589999999999999999999853 236677665555442 57632 2111 11 13566666665
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=56.71 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=89.6
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEcc--------CccCcCCCCHHHHHHHHHHHHHhhCC-CcE
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGG--------TTGEGQLMSWDEHIMLIGHTVNCFGA-SVK 129 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~G--------stGE~~~LT~~Er~~li~~~v~~~~g-rvp 129 (359)
|.-++-.|...| |==+.....+.++.+++.|+.||.+=- ..+--...+.+|..+-++.+++.... ..-
T Consensus 72 I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 72 IVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 444445566544 323444478999999999999999844 33433467999999999998886543 233
Q ss_pred EEEec---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCC-CCCHHHHHH
Q 018253 130 VIGNT---GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQ-DIPPRVIHT 205 (359)
Q Consensus 130 Viagv---g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~-~ls~e~l~~ 205 (359)
|++=+ .....+++|++++.+.++|||++++-- ..+.+++.++-+.+. .|++ .|.=..++. .++.+.+.+
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~----~~~~~ei~~~~~~~~--~P~~-~nv~~~~~~p~~s~~eL~~ 224 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEA----MLDVEEMKRVRDEID--APLL-ANMVEGGKTPWLTTKELES 224 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC----CCCHHHHHHHHHhcC--CCee-EEEEecCCCCCCCHHHHHH
Confidence 44432 234689999999999999999999843 356777766665542 5762 222111122 356666666
Q ss_pred H
Q 018253 206 M 206 (359)
Q Consensus 206 L 206 (359)
|
T Consensus 225 l 225 (294)
T TIGR02319 225 I 225 (294)
T ss_pred c
Confidence 5
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0079 Score=60.59 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEE---------ccCccCcCCCCHHHHHHHHHHHHHhhC---CCcEEEEecCC---------
Q 018253 78 LEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKVIGNTGS--------- 136 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v---------~GstGE~~~LT~~Er~~li~~~v~~~~---grvpViagvg~--------- 136 (359)
.....++++.++++|+.||-+ ||..|--...+.+|..+-+.+++.... ...-||+=+-+
T Consensus 160 ~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~ 239 (428)
T PRK15063 160 VLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSD 239 (428)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccc
Confidence 344889999999999999988 666665557899998888888877543 22334444444
Q ss_pred ----------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEEeC-C
Q 018253 137 ----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TIIYNV-P 191 (359)
Q Consensus 137 ----------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P--iiiYn~-P 191 (359)
..++++|++++.+.+ |||.+.+-.. .++.+++.++-+.|....| ++.||. |
T Consensus 240 ~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~---~~d~ee~~~fa~~v~~~~P~~~layn~sP 315 (428)
T PRK15063 240 VDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETS---TPDLEEARRFAEAIHAKFPGKLLAYNCSP 315 (428)
T ss_pred ccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCC---CCCHHHHHHHHHhhcccCccceeecCCCC
Confidence 358999999999999 9999977532 2678888888888865568 889984 5
Q ss_pred CCC-CCCCCHHHHHHHh
Q 018253 192 SRT-GQDIPPRVIHTMA 207 (359)
Q Consensus 192 ~~t-g~~ls~e~l~~La 207 (359)
+.+ ...++++++++..
T Consensus 316 sfnW~~~~~~~~~~~f~ 332 (428)
T PRK15063 316 SFNWKKNLDDATIAKFQ 332 (428)
T ss_pred CcccccccCHHHHHHHH
Confidence 533 2347777766553
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=57.01 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE---cCCCCCC---CCH-HHHHHHHHHHH
Q 018253 108 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH---INPYYGK---TSL-EGLISHFDSVL 180 (359)
Q Consensus 108 LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v---~pP~y~~---~s~-~~l~~yf~~Ia 180 (359)
...+++.+.++.+.+.. ++||+++++..+.++..+.++.++++|+|++.+ .||.... .+. +.+.+..++|.
T Consensus 84 ~g~d~~~~~i~~~~~~~--~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV--DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVK 161 (334)
T ss_pred cCHHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHH
Confidence 55788998888776655 479999999999999999999999999999988 5564321 111 23455556666
Q ss_pred hc--CCeEEEeCCC
Q 018253 181 SM--GPTIIYNVPS 192 (359)
Q Consensus 181 ~a--~PiiiYn~P~ 192 (359)
+. .||++.-.|.
T Consensus 162 ~~~~iPV~vKl~p~ 175 (334)
T PRK07565 162 SAVSIPVAVKLSPY 175 (334)
T ss_pred hccCCcEEEEeCCC
Confidence 65 6999997763
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.022 Score=55.06 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=93.4
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCc--------cCc--CCCCHHHHHHHHHHHHHhhCC-C
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTT--------GEG--QLMSWDEHIMLIGHTVNCFGA-S 127 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~Gst--------GE~--~~LT~~Er~~li~~~v~~~~g-r 127 (359)
|.-++--|...| |-=|.....+.|+.+++.|+.|+.+=-.+ .++ ...+.+|..+-++.+++...+ +
T Consensus 70 I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d 149 (290)
T TIGR02321 70 IASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRD 149 (290)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCC
Confidence 344444566544 33344468999999999999999984432 133 356899999999888876432 2
Q ss_pred cEEEEecC----CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018253 128 VKVIGNTG----SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 128 vpViagvg----~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l 203 (359)
.-|++=+- ..+.+|+|++++.+.++|||++++-.|. .+.+++.+.-+.+.--+|+++- |. .+-.++.+.+
T Consensus 150 ~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~~~~ei~~~~~~~~~p~pv~~~--~~-~~p~~~~~~l 223 (290)
T TIGR02321 150 FVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---KTPDEILAFVKSWPGKVPLVLV--PT-AYPQLTEADI 223 (290)
T ss_pred EEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---CCHHHHHHHHHhcCCCCCeEEe--cC-CCCCCCHHHH
Confidence 33344332 2357999999999999999999985322 4678888877776433687643 32 2334677777
Q ss_pred HHHhc
Q 018253 204 HTMAQ 208 (359)
Q Consensus 204 ~~La~ 208 (359)
.+|.+
T Consensus 224 ~~lg~ 228 (290)
T TIGR02321 224 AALSK 228 (290)
T ss_pred HHhcC
Confidence 77643
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=54.97 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC------------------CC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS------------------NS 138 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~------------------~s 138 (359)
+.+...+.+..+++.|++|+-+=+.. |..+.++.+++. .++|++.++. .+
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 44778889999999999999998853 555556665543 3899999886 34
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCC-CCCCCCCCHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVP-SRTGQDIPPRVIHTM 206 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P-~~tg~~ls~e~l~~L 206 (359)
.+++|+.++.++++|||++++--+ +.+++.+..+.+ ..|++..=.| ...|+-+....+.-+
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~-----~~e~~~~i~~~~--~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV-----PVELAKQITEAL--AIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC-----CHHHHHHHHHhC--CCCEEEEecCcCCCceEEeHHhhhcc
Confidence 779999999999999999998533 445544433332 2687654343 334555554444433
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.7 Score=42.41 Aligned_cols=183 Identities=12% Similarity=0.039 Sum_probs=98.8
Q ss_pred CceEEeeecCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC-C-
Q 018253 60 LRLITAIKTPYLPDGRFDL-EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG-S- 136 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~-~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg-~- 136 (359)
+|++...-+- +++-|+. +...+++..+.+.|+.|+-+.+ .+.++.+.+.+ .+|++.=+. .
T Consensus 5 ~~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~--~~Pil~~~~~d~ 67 (221)
T PRK01130 5 GGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVV--DVPIIGIIKRDY 67 (221)
T ss_pred CCEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhC--CCCEEEEEecCC
Confidence 5666655543 4555655 4568889989999999988631 34555555544 578762111 0
Q ss_pred ----CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh-c-CCeEEEeCCCCCCCCCCHHHHHHHhcC-
Q 018253 137 ----NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS-M-GPTIIYNVPSRTGQDIPPRVIHTMAQS- 209 (359)
Q Consensus 137 ----~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~-a-~PiiiYn~P~~tg~~ls~e~l~~La~~- 209 (359)
.-.....+.++.+.++|||.+++..|.-..++.+++.++++.+.+ . .|++.- ..+.+.+.++.+.
T Consensus 68 ~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~--------v~t~ee~~~a~~~G 139 (221)
T PRK01130 68 PDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD--------CSTLEEGLAAQKLG 139 (221)
T ss_pred CCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe--------CCCHHHHHHHHHcC
Confidence 000012356789999999988877665433322344445555544 3 565532 1255666665543
Q ss_pred CCeEEEe----------ccCchh----hHhhhhCCceEEEecCC-chhhhhhhhcCCceeecccccccHHHHH
Q 018253 210 PNLAGVK----------ECVGND----RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSNLVPGMMR 267 (359)
Q Consensus 210 pnivGiK----------~ss~d~----~l~~~~~~~~~v~~G~d-~~~~~~~l~~Ga~G~is~~an~~P~l~~ 267 (359)
..++++- ....+. +++...+-.+..-.|-. ..-+...+..|++|++.|.+-+-|....
T Consensus 140 ~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~ 212 (221)
T PRK01130 140 FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEIT 212 (221)
T ss_pred CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHH
Confidence 2333331 111111 22222222233333442 2223445789999999887765555433
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.18 Score=47.82 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC-------HHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS-------TREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s-------t~~ai~la~~a 149 (359)
+++-.+..++.+.+.|++++... .-+++....-.+.++|+|+..++.+ -+..+-..+.|
T Consensus 41 gl~d~e~~v~~v~~~g~dav~~~--------------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAMT--------------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred cccCHHHHHHHHHhcCCCEEEec--------------HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHH
Confidence 66677888999999999998742 3345555555666899999887651 33455567788
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh-c----CCeEEEeCCCCCCC----CCCHHHHH---HHh-cC-CCeEEE
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLS-M----GPTIIYNVPSRTGQ----DIPPRVIH---TMA-QS-PNLAGV 215 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~-a----~PiiiYn~P~~tg~----~ls~e~l~---~La-~~-pnivGi 215 (359)
.++|||||.+.-. ++..++.+.++-+.++.+ + +|++++=.|.-.++ ..+++.+. ||+ ++ -.|+=.
T Consensus 107 i~lgadAV~~~Vy-~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~ 185 (265)
T COG1830 107 IRLGADAVGATVY-VGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT 185 (265)
T ss_pred HhCCCcEEEEEEe-cCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee
Confidence 8999999988743 344455666666666654 2 69998888865555 57777655 666 55 468778
Q ss_pred eccCchhhHh---hhhCCceEEEecCCc-----hh---hhhhhhcCCceeecc
Q 018253 216 KECVGNDRVE---HYTGNGIVVWSGNDD-----QC---HDARWNHGATGVISV 257 (359)
Q Consensus 216 K~ss~d~~l~---~~~~~~~~v~~G~d~-----~~---~~~~l~~Ga~G~is~ 257 (359)
|++.....++ ..++-.+ |.+|... .+ ....+..|+.|.+.|
T Consensus 186 ~ytg~~e~F~~vv~~~~vpV-viaGG~k~~~~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 186 KYTGDPESFRRVVAACGVPV-VIAGGPKTETEREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred cCCCChHHHHHHHHhCCCCE-EEeCCCCCCChHHHHHHHHHHHHccCcchhhh
Confidence 8876554443 3444333 3344322 12 123467788888765
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=51.32 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-C-------HHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-S-------TREAIHATEQ 148 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-s-------t~~ai~la~~ 148 (359)
+.+..+.+++..++.|++++... +-+++.......+++|+|+.+.+. + .+...--.+.
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~--------------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVed 154 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST--------------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVED 154 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC--------------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHH
Confidence 56677889999999999999865 556666444455689999987653 1 2333444788
Q ss_pred HHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC--------CHHHHH---HHh-cC-C
Q 018253 149 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI--------PPRVIH---TMA-QS-P 210 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~l--------s~e~l~---~La-~~-p 210 (359)
|.++|||||.+.- |.....+.+.++-+.+++++ +|++++-.|. |..+ +++.++ +++ ++ .
T Consensus 155 AlrLGAdAV~~tv-y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR--G~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 155 ALRLGAVAVGATI-YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLR--NSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHCCCCEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc--CcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 9999999998872 22334456677777777653 6999877774 3222 245444 555 55 5
Q ss_pred CeEEEeccCc
Q 018253 211 NLAGVKECVG 220 (359)
Q Consensus 211 nivGiK~ss~ 220 (359)
.|+=+|++..
T Consensus 232 DIVKv~yp~~ 241 (348)
T PRK09250 232 DIIKQKLPTN 241 (348)
T ss_pred CEEEecCCCC
Confidence 7888998753
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.3 Score=41.92 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=102.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----------------cCCCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----------------~~~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|.-|++...+.++.+.+.|+|-|=++--.+. -.-+|.+.-.++++.+.+. .-++|++
T Consensus 14 ~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~-~~~~plv- 91 (256)
T TIGR00262 14 PFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK-HPNIPIG- 91 (256)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEE-
Confidence 344467789999999999999999998776553322 1123555555666665543 1257866
Q ss_pred ecCCCCH--H-HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNST--R-EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st--~-~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
..+-.+. + -.-++.+.++++|+|++++.. . ..++..++++.+-+. +..++-=.|. -+.+.+.++++
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD--l---p~ee~~~~~~~~~~~gl~~i~lv~P~-----T~~eri~~i~~ 161 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD--L---PLEESGDLVEAAKKHGVKPIFLVAPN-----ADDERLKQIAE 161 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC--C---ChHHHHHHHHHHHHCCCcEEEEECCC-----CCHHHHHHHHH
Confidence 3332233 1 235678999999999988852 2 236677777777665 4444444452 35677777774
Q ss_pred -CCCeEEE---------eccCch---h---hHhhhhCCceEEEecCC---chhhhhhhhcCCceeecccc
Q 018253 209 -SPNLAGV---------KECVGN---D---RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pnivGi---------K~ss~d---~---~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+ |....+ . +++++.+. .++.|.. ..-.......|+||++.|++
T Consensus 162 ~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 162 KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3433322 211111 1 23333333 3444432 12233446789999999865
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.01 E-value=1 Score=43.18 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE--cCCCCCC------CCHHHHHHHHHHHHhc--CCeEEE
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH--INPYYGK------TSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v--~pP~y~~------~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
.+.|+++++...+.++-.+.++.++++|+|++-+ ..|.... .+.+.+.+.++++.+. .||++=
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 3579999999999999999999999999999966 3344322 3556677777777765 587765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.3 Score=42.60 Aligned_cols=107 Identities=17% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCC----------------------CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQL----------------------MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~----------------------LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
..++.+.+.|...+++.+-|-|-.. ...++..+-+....+. -++|++++++..+.+
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~--~~~p~i~si~g~~~~ 104 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEE--FDTPIIANVAGSTEE 104 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhc--cCCcEEEEeccCCHH
Confidence 4555566788766655544444322 2233444333332222 258999999999999
Q ss_pred HHHHHHHHHHhCC-CCEEEE---c--CCC---CCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 141 EAIHATEQGFAVG-MHAALH---I--NPY---YGKTSLEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 141 ~ai~la~~a~~~G-adav~v---~--pP~---y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
+-.+.++.++++| +|++-+ . .+. ....+.+.+.+..++|.++ .||++==.|
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999999 999966 1 122 1223567777777777765 577764333
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.24 Score=48.12 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCc---------------CCCCHHHH----HHHHHHHHHhhCCCcEEEEecCC-----
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEG---------------QLMSWDEH----IMLIGHTVNCFGASVKVIGNTGS----- 136 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~---------------~~LT~~Er----~~li~~~v~~~~grvpViagvg~----- 136 (359)
+.+-.+...++|.|||=+.+..|-. +-=|.+.| .++++.+.+.++.++||.+=++.
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3334445567999999998875531 01134566 45566666666667787764432
Q ss_pred --CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCC---------HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH
Q 018253 137 --NSTREAIHATEQGFAVGMHAALHINPYYGKTS---------LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 137 --~st~~ai~la~~a~~~Gadav~v~pP~y~~~s---------~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l 203 (359)
.+.++++++++.+++.|+|.+-+....+..+. +..-..+.+.+.+. .||+.- |---+++.+
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~------Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV------GGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe------CCCCCHHHH
Confidence 46899999999999999999988776553211 12234455555554 465532 323357777
Q ss_pred HHHhc
Q 018253 204 HTMAQ 208 (359)
Q Consensus 204 ~~La~ 208 (359)
.++.+
T Consensus 297 ~~~l~ 301 (327)
T cd02803 297 EEILA 301 (327)
T ss_pred HHHHH
Confidence 77653
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=48.11 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~Ga 154 (359)
+.+.+.+.++...+.|+|-|.+..++ . .+.++.+++.. ++||++ |++..+.+++++.++.+.+.||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~------~----~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga 208 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTG------D----AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGA 208 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCC------C----HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCC
Confidence 34556666666777888888775332 1 33455555543 466655 4555789999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHH
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia 180 (359)
+++.+..-.+...++++..+-++++.
T Consensus 209 ~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 209 AGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred cEEEechhhhcCCCHHHHHHHHHHHh
Confidence 99999999898888888888887763
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.38 Score=44.79 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...+.++.+.+.|.|+|+++||+|= |.++-.++++...+ .-.+|||.=.|+.+- ..-+||+++
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~--~~~lPvilfP~~~~~----------is~~aDavf 91 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE--RTDLPVILFPGSPSG----------ISPYADAVF 91 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh--hcCCCEEEecCChhc----------cCccCCeEE
Confidence 44566777888999999999999996 78888888888776 347999987775321 112789988
Q ss_pred EcC------CCCCCCCHHHHHHHHHHHHhc-CC--eEEEeCCCCC-----C---CCCCHHHH---HHHhc-C--CCeEEE
Q 018253 159 HIN------PYYGKTSLEGLISHFDSVLSM-GP--TIIYNVPSRT-----G---QDIPPRVI---HTMAQ-S--PNLAGV 215 (359)
Q Consensus 159 v~p------P~y~~~s~~~l~~yf~~Ia~a-~P--iiiYn~P~~t-----g---~~ls~e~l---~~La~-~--pnivGi 215 (359)
++. |||.-..|-+-..-+..+-.+ .| -++.| |..+ + +++..+.+ .+|++ + =.++.+
T Consensus 92 f~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~-p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Yl 170 (240)
T COG1646 92 FPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVN-PDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYL 170 (240)
T ss_pred EEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEEC-CCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEE
Confidence 764 677544443333333333333 44 24444 3322 2 33443333 34553 2 247778
Q ss_pred eccCch--h----hHhhhhCCceEEEecCC----chhhhhhhhcCCceeeccc
Q 018253 216 KECVGN--D----RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVT 258 (359)
Q Consensus 216 K~ss~d--~----~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~ 258 (359)
-.+|+- + .+++.... ..+|.|.. ++.. ....+|+|-++.|.
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~-~~LivGGGIrs~E~A~-~~a~agAD~IVtG~ 221 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSD-TPLIVGGGIRSPEQAR-EMAEAGADTIVTGT 221 (240)
T ss_pred EecCCCCCCcCHHHHHHhhcc-ceEEEcCCcCCHHHHH-HHHHcCCCEEEECc
Confidence 888764 1 23333222 24555432 2333 33456999887663
|
|
| >CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.31 Score=50.18 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=76.9
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC---CCcEE-EEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~---grvpV-iagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+. |+.++ .+++++.+++
T Consensus 169 LigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~ 248 (475)
T CHL00040 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCE 248 (475)
T ss_pred eEEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHH
Confidence 3445556654589999999999999999884321113456677789999988877777543 44444 7789878999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~ 167 (359)
+.++.++.+++.|+.++|+-+-.+.-.
T Consensus 249 em~~ra~~a~e~G~~~~mv~~~~~G~~ 275 (475)
T CHL00040 249 EMYKRAVFARELGVPIVMHDYLTGGFT 275 (475)
T ss_pred HHHHHHHHHHHcCCceEEEeccccccc
Confidence 999999999999999998876555433
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=1 Score=41.54 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=108.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.-.++++.+-. .|.+...++++.+++.|++-+=+. |+..+-.+.++...+..+ + +++|+|.-
T Consensus 13 ~~~~~iaV~r~-------~~~~~a~~i~~al~~~Gi~~iEit--------l~~~~~~~~I~~l~~~~p-~--~~IGAGTV 74 (212)
T PRK05718 13 RAGPVVPVIVI-------NKLEDAVPLAKALVAGGLPVLEVT--------LRTPAALEAIRLIAKEVP-E--ALIGAGTV 74 (212)
T ss_pred HHCCEEEEEEc-------CCHHHHHHHHHHHHHcCCCEEEEe--------cCCccHHHHHHHHHHHCC-C--CEEEEeec
Confidence 34667776543 577899999999999999987554 666788889988887765 4 56676655
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-CCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~-pnivGiK 216 (359)
.+. +.++.|.++||+-++. |.+ + .++.++.++ |++|...|. ++|..+.+..+. -.++-+-
T Consensus 75 l~~---~~a~~a~~aGA~Fivs--P~~---~-~~vi~~a~~---------~~i~~iPG~-~TptEi~~a~~~Ga~~vKlF 135 (212)
T PRK05718 75 LNP---EQLAQAIEAGAQFIVS--PGL---T-PPLLKAAQE---------GPIPLIPGV-STPSELMLGMELGLRTFKFF 135 (212)
T ss_pred cCH---HHHHHHHHcCCCEEEC--CCC---C-HHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCCCEEEEc
Confidence 444 7788999999986554 555 3 377777766 666655564 566556665544 3454444
Q ss_pred ccC--chh-hHhhhhC--C--ceEEEecCCchhhhhhhhcCCceeecccccccHH
Q 018253 217 ECV--GND-RVEHYTG--N--GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPG 264 (359)
Q Consensus 217 ~ss--~d~-~l~~~~~--~--~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~ 264 (359)
..+ +.. .++.+.. + +|..-.|-+..-+..++..|+..++. .++++|+
T Consensus 136 Pa~~~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vg-gs~L~~~ 189 (212)
T PRK05718 136 PAEASGGVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIG-GSWMVPK 189 (212)
T ss_pred cchhccCHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEE-ChHhCCc
Confidence 332 122 2333321 2 44444476655666777888555544 5666664
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=46.11 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCH-HHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NST-REAIH 144 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~st-~~ai~ 144 (359)
|.+.+.+..+.+.+.|++||=+++.. |-...-..+.-.++++.+.+.++ +||.+.+.. .+. +++++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCchHHHH
Confidence 67889999999989999999887654 11111133444556666655543 577776532 122 48999
Q ss_pred HHHHHHhCCCCEEEEcCC
Q 018253 145 ATEQGFAVGMHAALHINP 162 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP 162 (359)
+++...+.|+|.+.+...
T Consensus 143 ~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 143 LAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHhCCCEEEECCC
Confidence 999999999999987653
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.12 Score=49.90 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEcc-----Cc-cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNG-AEGMIVGG-----TT-GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~G-v~Gl~v~G-----st-GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
|.+.+.+.++.+.+.| +|+|=++. .. |+....+.+.-.++++.+.+.+ ++||++=++. +.++.+++++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~-~~~~~~~~a~~l 178 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP-NVTDIVEIAKAA 178 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC-CchhHHHHHHHH
Confidence 6789999999999998 99997743 22 5666667788888888888776 6899998874 567999999999
Q ss_pred HhCCCCEEEEcCC
Q 018253 150 FAVGMHAALHINP 162 (359)
Q Consensus 150 ~~~Gadav~v~pP 162 (359)
++.|+|++.++.-
T Consensus 179 ~~~G~d~i~~~nt 191 (301)
T PRK07259 179 EEAGADGLSLINT 191 (301)
T ss_pred HHcCCCEEEEEcc
Confidence 9999999987643
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.4 Score=40.41 Aligned_cols=176 Identities=11% Similarity=0.112 Sum_probs=102.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|.-|++.+.+.++.+++.|+|-|=++=-.+. ++ -+|.+.-.++++.+.+. -++|++.
T Consensus 19 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~~~p~vl 96 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE--IKAPIVI 96 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC--CCCCEEE
Confidence 444467789999999999999999997755433322 11 12333444444444322 3678665
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
=+..|..-. .-++.+.++++|+|++++. .. ..++..+|++.+.+. + +|.+. .|. -+.+-++++++
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviip--DL---P~ee~~~~~~~~~~~gi~~I~lv-~Pt-----T~~eri~~i~~ 165 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIP--DL---PYEESDYLISVCNLYNIELILLI-APT-----SSKSRIQKIAR 165 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEec--CC---CHHHHHHHHHHHHHcCCCEEEEE-CCC-----CCHHHHHHHHH
Confidence 455443322 3457889999999999884 22 237777888877765 4 45554 342 35778888874
Q ss_pred -CCCeE---------EEeccCch--h----hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeecccc
Q 018253 209 -SPNLA---------GVKECVGN--D----RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pniv---------GiK~ss~d--~----~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~a 259 (359)
...++ |.|....+ . ++++.++. .+..|..- .-.......|+||+|.|++
T Consensus 166 ~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~--Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 166 AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNK--PIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCC--CEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 33343 33322111 0 23333333 34444431 1223335689999999865
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.079 Score=51.25 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+.+.|+++|.+.|+.|....-... -.+++..+.+.+.+++|||+.=|=.+..++++.. .+|||+|++..|+.
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal----~lGAd~V~ig~~~l 260 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGAPA-TIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL----ALGADAVLIGRPFL 260 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCCcC-HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH----HcCCCEEEEcHHHH
Confidence 556778999999998887753221111 2344555556666679998754444555555444 49999999999977
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.++++.+.+.
T Consensus 261 ~~~~~~g~~~v~~~i~~l~~e 281 (299)
T cd02809 261 YGLAAGGEAGVAHVLEILRDE 281 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 54 3567888888777654
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.63 Score=44.39 Aligned_cols=159 Identities=13% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-------CHHHHHHHHHHHHhC
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-------STREAIHATEQGFAV 152 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-------st~~ai~la~~a~~~ 152 (359)
.+...++.+.+ |++++++. +-+++...... .++|+|+.+++. ..+..+--.++|.++
T Consensus 43 ~~~~~~~~i~~-~~da~~~~--------------~G~~~~~~~~~-~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrl 106 (264)
T PRK08227 43 RIDINIAPLFP-YADVLMCT--------------RGILRSVVPPA-TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRL 106 (264)
T ss_pred ChHHHHHHHhh-cCCEEEeC--------------hhHHHhccccc-CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHC
Confidence 34666777777 89998865 44555533333 468999987752 234444457889999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHH---HHHHh-cC-CCeEEEeccCch-
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRV---IHTMA-QS-PNLAGVKECVGN- 221 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~---l~~La-~~-pnivGiK~ss~d- 221 (359)
|||||.+.-. .....+.+.++.+.+|++. +|++.. .|......=+++. ..|++ ++ ..|+=++++...
T Consensus 107 GAdAV~~~v~-~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~-~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f 184 (264)
T PRK08227 107 NACAVAAQVF-IGSEYEHQSIKNIIQLVDAGLRYGMPVMAV-TAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGF 184 (264)
T ss_pred CCCEEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-ecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHH
Confidence 9999988732 2344566777778887764 698872 2532222223443 34665 55 478888887511
Q ss_pred hhHhhhhCCceEEEecCCc----hh---hhhhhhcCCceeecc
Q 018253 222 DRVEHYTGNGIVVWSGNDD----QC---HDARWNHGATGVISV 257 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~----~~---~~~~l~~Ga~G~is~ 257 (359)
.++.+..+-.+ ++.|... .+ ...++..|+.|+..|
T Consensus 185 ~~vv~a~~vPV-viaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 185 ERITAGCPVPI-VIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHHcCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 23333333233 3444322 11 123477899998766
|
|
| >cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.45 Score=48.22 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTR 140 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~ 140 (359)
+-|-+++.--+.-+.+.+++..+...|+|=|= -- .-........+||...+-.+++. ++.++--.+++++.+++
T Consensus 135 ~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IK-DDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~ 213 (414)
T cd08206 135 LGTIVKPKLGLSPKEYARVVYEALRGGLDFVK-DDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPE 213 (414)
T ss_pred EEEecccccCCCHHHHHHHHHHHHhcCCcccc-cCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHH
Confidence 44555565458899999999999999998332 22 24456777899998888766665 33444456688877799
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|+.++|+-+-.+.
T Consensus 214 em~~ra~~~~~~G~~~~mv~~~~~G 238 (414)
T cd08206 214 EMIKRAEFAKELGSVIVMVDGVTAG 238 (414)
T ss_pred HHHHHHHHHHHhCCcEEEEeeeccc
Confidence 9999999999999999999865554
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. |
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.65 Score=47.08 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=75.9
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNST 139 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st 139 (359)
|-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+-.+++. ++.++-..+++++ ++
T Consensus 145 PL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~-~~ 223 (412)
T TIGR03326 145 PLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITA-PV 223 (412)
T ss_pred ceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecC-CH
Confidence 334566666655899999999999999999843322234556678899999888777754 4444445678886 49
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++.++.++.+++.|++++|+-+-.+.
T Consensus 224 ~em~~ra~~~~~~G~~~~mv~~~~~G 249 (412)
T TIGR03326 224 REMERRAELVADLGGQYVMVDVVVCG 249 (412)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 99999999999999999999855553
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=95.19 E-value=2 Score=40.01 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=93.9
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.+.++.+.+.|.|+|+++||+|. |.+.-.++++.+.+. .+||+.=.|+.+. ..-+||++++..
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~---~lPvilfp~~~~~----------i~~~aDa~l~~s 79 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY---GLPIILFPSNPTN----------VSRDADALFFPS 79 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc---CCCEEEeCCCccc----------cCcCCCEEEEEE
Confidence 34777888999999999999997 777666677776652 2899986654321 125699998874
Q ss_pred ------CCCCCCCHHHHHHHHHHHHhc-CC--eEEEeCCCCCC-------CCCCHHHH---HHHh-c-CC-CeEEEeccC
Q 018253 162 ------PYYGKTSLEGLISHFDSVLSM-GP--TIIYNVPSRTG-------QDIPPRVI---HTMA-Q-SP-NLAGVKECV 219 (359)
Q Consensus 162 ------P~y~~~s~~~l~~yf~~Ia~a-~P--iiiYn~P~~tg-------~~ls~e~l---~~La-~-~p-nivGiK~ss 219 (359)
|+|.-..+-+-..-|..+... .| -++-|.-...+ .+.+.+.+ .+|+ + .. .++.+-.+|
T Consensus 80 vlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs 159 (223)
T TIGR01768 80 VLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGS 159 (223)
T ss_pred eecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 666444443333333444333 56 23334322111 11333322 3455 3 22 577777776
Q ss_pred ch-----h----hHhhhhCCceEEEecCC---chhhhhhhhcCCceeeccccccc-HHHHHH
Q 018253 220 GN-----D----RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTSNLV-PGMMRE 268 (359)
Q Consensus 220 ~d-----~----~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~~an~~-P~l~~~ 268 (359)
+- . ++++..+ +..++.|.. ..-....+.+|+++++.|+.-+- |+.+.+
T Consensus 160 ~~g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~ 220 (223)
T TIGR01768 160 GAPEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALE 220 (223)
T ss_pred CCCCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHH
Confidence 53 1 1233321 344544442 12223445679999998765442 444443
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.19 Score=48.26 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+|+|-++-++ |..+.-+.+.-.++++.+.+.+ ++||++-++. +.++..++++.++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~~-~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLTP-NVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeCC-CchhHHHHHHHHH
Confidence 57889999999999999999886553 4445556666778888887766 6899998864 5568999999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
++|+|++.+..-.+
T Consensus 177 ~~G~d~i~~~nt~~ 190 (296)
T cd04740 177 EAGADGLTLINTLK 190 (296)
T ss_pred HcCCCEEEEECCCc
Confidence 99999998865443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.68 Score=46.86 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=75.2
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNST 139 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st 139 (359)
|-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+ +.++-..+++++. +
T Consensus 144 PLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~ 222 (406)
T cd08207 144 PLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-I 222 (406)
T ss_pred ceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-H
Confidence 3445556665558999999999999999998432111345666788999988777766654 3344456688864 9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++.++.++.++++|++++|+-+-.+.
T Consensus 223 ~em~~ra~~~~~~G~~~~mv~~~~~G 248 (406)
T cd08207 223 DEMRRNHDLVVEAGGTCVMVSLNSVG 248 (406)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccc
Confidence 99999999999999999999865553
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.25 Score=47.15 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+++|-++.++--.. ....+.-.++++.+.+.+ ++||++.++. .+.++..++++.++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 668889999999999999999886542211 223455567787777766 6899998774 45668999999999
Q ss_pred hCCCCEEEEcCC
Q 018253 151 AVGMHAALHINP 162 (359)
Q Consensus 151 ~~Gadav~v~pP 162 (359)
++|+|++.+..-
T Consensus 187 ~~Gad~i~~~~~ 198 (289)
T cd02810 187 RAGADGLTAINT 198 (289)
T ss_pred HcCCCEEEEEcc
Confidence 999999998754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.94 Score=46.05 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=72.9
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++ ++++
T Consensus 163 ~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~e 241 (424)
T cd08208 163 FFGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDR 241 (424)
T ss_pred eeeeecccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHH
Confidence 44455665458999999999999999988332111345666778899998776666643 344444568887 7999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
.+++++.++++|++++|+-+-.+.
T Consensus 242 m~~ra~~a~~~G~~~vmv~~~~~G 265 (424)
T cd08208 242 LMELHDVAVRNGANALLINAMPVG 265 (424)
T ss_pred HHHHHHHHHHhCCCEEEEeeeccc
Confidence 999999999999999999855553
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.77 Score=46.55 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=74.0
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++. ++
T Consensus 133 L~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~ 211 (412)
T cd08213 133 LLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VR 211 (412)
T ss_pred eEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HH
Confidence 344556666558999999999999999998332111334566778999998887776643 3444456688865 99
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|++++|+-+-.+.
T Consensus 212 em~~ra~~a~e~G~~~~mv~~~~~G 236 (412)
T cd08213 212 EMERRAELVADLGGKYVMIDVVVAG 236 (412)
T ss_pred HHHHHHHHHHHhCCCeEEeeccccC
Confidence 9999999999999999998755553
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.17 Score=50.21 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+.+.|+++|++.++-|....-...- .+.+..+.+.+++++|||+.=|=.+-.+.++.. .+|||+|++-.|
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~-~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaL----alGA~~V~iGr~ 307 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPAS-FDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKAL----ASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchH-HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH----HcCCCEEEECHH
Confidence 445677889999999987766542222222 234455566677789999855544555555443 389999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++..+++.+.+.
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~E 330 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKE 330 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH
Confidence 8764 3678888888887664
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=43.53 Aligned_cols=86 Identities=10% Similarity=-0.036 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAI 143 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpViag--vg~~st~~ai 143 (359)
-|.+.+.+-+..+.+.|.++|=++... |....-..+.=.++++.+++.++.++||.+= +|-.+.++++
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 567888888888888999998887543 2233344555566777777766556888775 4444556799
Q ss_pred HHHHHHHhCCCCEEEEcC
Q 018253 144 HATEQGFAVGMHAALHIN 161 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~p 161 (359)
++++.+++.|+|++.+.+
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 152 EIADAVQQAGATELVVHG 169 (312)
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 999999999999998875
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=50.88 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=66.3
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+++.|++||.|.+..|....-...... .+..+++.+++++|||+.=|=.+-.+.+ + |.++|||++++.-|
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~-~L~ei~~av~~~i~vi~dGGIr~g~Dv~---K-aLalGAd~V~igR~ 314 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFD-SLQEVAEAVDKRVPIVFDSGVRRGQHVF---K-ALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCCCCcHHH-HHHHHHHHhCCCCcEEeeCCcCCHHHHH---H-HHHcCCCEEEEcHH
Confidence 34456778999999999999876544443333 4445566677889999855433444443 2 33399999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++...++.+.+.
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKE 337 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 7653 4788888888877654
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.21 Score=48.27 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHC--CCCEEEEccCccCc------------------CCCC----HHHHHHHHHHHHHhhCCCcEEEE
Q 018253 77 DLEAYDDLVNMQIVN--GAEGMIVGGTTGEG------------------QLMS----WDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 77 D~~~l~~li~~li~~--Gv~Gl~v~GstGE~------------------~~LT----~~Er~~li~~~v~~~~grvpVia 132 (359)
|.+.+.++++.+.+. |++||.+.-|++-. --+| ...-.+.+..+.+.+++++|||+
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig 248 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIG 248 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEE
Confidence 667788899988888 99999976555321 1122 22234556666677766799987
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KT 167 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~-~~ 167 (359)
.=|=.+.++++++.+ +|||+|++..-.++ .+
T Consensus 249 ~GGI~s~~da~e~l~----aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 249 VGGVLDGRGAFRMRL----AGASAVQVGTALGKEGP 280 (294)
T ss_pred eCCCCCHHHHHHHHH----cCCCceeEchhhhhcCc
Confidence 656667888888885 79999999988764 44
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=42.44 Aligned_cols=142 Identities=22% Similarity=0.169 Sum_probs=89.7
Q ss_pred CCceEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCccC--------cCCCCHHHHHHHHHHHHHhhCCC
Q 018253 59 ALRLITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE--------GQLMSWDEHIMLIGHTVNCFGAS 127 (359)
Q Consensus 59 ~~Gi~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE--------~~~LT~~Er~~li~~~v~~~~gr 127 (359)
.+.|..+.-.|..-| |==+.....+.|..+++.|+.|+-+=-..+- -...+.+|..+=++.+++.....
T Consensus 70 vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~ 149 (289)
T COG2513 70 ARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDP 149 (289)
T ss_pred HHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCC
Confidence 445666666666544 2223677889999999999999988666653 45678999999999999876542
Q ss_pred cEEEEe----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018253 128 VKVIGN----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 128 vpViag----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l 203 (359)
-=||+. .....++++|++++.+.++|||++.. |-. .+.+++.++-+++.--+|+-+=-++. | -.+|.+.+
T Consensus 150 ~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al--~~~e~i~~f~~av~~pl~~N~t~~g~-t-p~~~~~~L 223 (289)
T COG2513 150 DFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EAL--TDLEEIRAFAEAVPVPLPANITEFGK-T-PLLTVAEL 223 (289)
T ss_pred CeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccC--CCHHHHHHHHHhcCCCeeeEeeccCC-C-CCcCHHHH
Confidence 223321 12334899999999999999998754 333 34555555544444112333332221 1 13555555
Q ss_pred HHH
Q 018253 204 HTM 206 (359)
Q Consensus 204 ~~L 206 (359)
+++
T Consensus 224 ~~~ 226 (289)
T COG2513 224 AEL 226 (289)
T ss_pred Hhc
Confidence 554
|
|
| >PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=45.54 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=74.0
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++. ++.+.-..+++++.++++
T Consensus 163 ~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~e 242 (468)
T PRK04208 163 LGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEE 242 (468)
T ss_pred EEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHH
Confidence 4444566545899999999999999998844322234556677889999877666654 334444577999877999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++.++.+.+.|++++|+-+-.+
T Consensus 243 m~~ra~~~~e~G~~~~mv~~~~~ 265 (468)
T PRK04208 243 MYKRAEFAKELGSPIVMIDVVTA 265 (468)
T ss_pred HHHHHHHHHHhCCCEEEEecccc
Confidence 99999999999999999875444
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.78 Score=44.16 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEccCc------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVN--GAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 76 ID~~~l~~li~~li~~--Gv~Gl~v~Gst------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
-|.+.+.+.++.+.+. ++++|-+|-+. |....-+.+...++++.+.+.+ ++||++=++ .+.++.+++++
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~-~~~~~~~~~a~ 176 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLS-PNVTDITEIAK 176 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECC-CChhhHHHHHH
Confidence 4578888999988765 49999997663 5666667788888898888766 579998876 36789999999
Q ss_pred HHHhCCCCEEEEcCCC
Q 018253 148 QGFAVGMHAALHINPY 163 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~ 163 (359)
.++++|+|++.+..-.
T Consensus 177 ~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 177 AAEEAGADGLTLINTL 192 (300)
T ss_pred HHHHcCCCEEEEEccC
Confidence 9999999999887543
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.9 Score=45.36 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=72.2
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+-.+++. ++.++--.+++++ +++
T Consensus 129 l~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~ 207 (366)
T cd08148 129 LVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTA-GTF 207 (366)
T ss_pred eeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHH
Confidence 34555666644889999999999999998833211134556677889996666555554 4444445668885 569
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
|.++.++.++++|++++|+-+-.+.
T Consensus 208 em~~ra~~~~~~G~~~~mv~~~~~G 232 (366)
T cd08148 208 EIIERAERALELGANMLMVDVLTAG 232 (366)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccc
Confidence 9999999999999999999855553
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.2 Score=38.75 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=86.7
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTR 140 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~ 140 (359)
+......-| +.|.-..+.....++..++.|++.+-+.-..|-..+=..++-.+-+..+++.+.+ -++||...+..+.+
T Consensus 53 ~~v~~~~~f-p~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~ 131 (203)
T cd00959 53 VKVCTVIGF-PLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE 131 (203)
T ss_pred cEEEEEEec-CCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH
Confidence 444444434 2344566777777999999999999888877743332335455555566666553 24457788888888
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 141 EAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
+-...+|.+.++|||.+=..+=|. ...+.+.+..+-+.+....||.+- -|.. +.+...++.
T Consensus 132 ~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a-----GGik-t~~~~l~~~ 193 (203)
T cd00959 132 EIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA-----GGIR-TLEDALAMI 193 (203)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe-----CCCC-CHHHHHHHH
Confidence 889999999999999777664444 234555544443433323566554 2334 555555554
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.7 Score=39.55 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEE--EEec--CCCCHHHHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKV--IGNT--GSNSTREAIHATEQGF 150 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpV--iagv--g~~st~~ai~la~~a~ 150 (359)
.-.+.++++++..++.|++++++. ...++.+.+...+. +.+ .+|. +...++.-+.-+++|.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~--------------p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVN--------------PCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--------------HHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999876 33444455544432 222 2221 2345666777799999
Q ss_pred hCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 151 AVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 151 ~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a---~Pii-iYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
+.|||++-++.++- . ....+.+.+...++.+. .|+. ++..+. ++++.+.+.++ .-..-.||-++|
T Consensus 80 ~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----l~~~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 80 ADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 99999998887753 2 34557788888888875 4653 455432 35676666553 345666888754
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=3 Score=40.64 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC----------CHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN----------STREAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~----------st~~ai~la 146 (359)
+.+-.+.+++..++.|+++++.. +-+++...... .++|+|+.+++. .....+--.
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~~--------------~G~l~~~~~~~-~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sV 121 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFATQ--------------LGLIARYGMDY-PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDV 121 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEeC--------------HHHHHhhcccc-CCCcEEEEECCCCCcCCcccCCccccceecH
Confidence 55567788999999999999865 45555543333 478999987652 111233346
Q ss_pred HHHHhCC------CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCC--CCCCHHHHH---HHh-cC
Q 018253 147 EQGFAVG------MHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTG--QDIPPRVIH---TMA-QS 209 (359)
Q Consensus 147 ~~a~~~G------adav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg--~~ls~e~l~---~La-~~ 209 (359)
+.|.++| ||||.+.- |.....+.+.++...+|++. +|+++.=+|.--. ..-.+++++ |++ ++
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v-~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTI-YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHhcCCccCCCceEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 7788888 88998862 22334456677777777753 6998766663211 123445544 555 55
Q ss_pred -CCeEEEeccC----ch-hhH---hhhhCCceEEEecCCch----hh---hhhhh-cCCceeecc
Q 018253 210 -PNLAGVKECV----GN-DRV---EHYTGNGIVVWSGNDDQ----CH---DARWN-HGATGVISV 257 (359)
Q Consensus 210 -pnivGiK~ss----~d-~~l---~~~~~~~~~v~~G~d~~----~~---~~~l~-~Ga~G~is~ 257 (359)
..|+=+|++. ++ ..+ .+.+++--.++.|.... ++ ...+. .|+.|++.|
T Consensus 201 GADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 201 GADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred cCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 4788888873 33 233 33332322456665431 21 22356 788888766
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.21 Score=46.40 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecC--CCCHHHH-----HHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTG--SNSTREA-----IHATEQ 148 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg--~~st~~a-----i~la~~ 148 (359)
+.++++++..++.|++++++.-... ..+.+...+ +++++++.. ...++.- +.-+++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~~--------------~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~ 84 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGYV--------------KPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEE 84 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGGH--------------HHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHHH--------------HHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHH
Confidence 4789999999999999999876543 344455555 788999874 4466666 799999
Q ss_pred HHhCCCCEEEEcCCCC--CCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC----CHHHHHHHhc---CCCeEE
Q 018253 149 GFAVGMHAALHINPYY--GKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI----PPRVIHTMAQ---SPNLAG 214 (359)
Q Consensus 149 a~~~Gadav~v~pP~y--~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~l----s~e~l~~La~---~pnivG 214 (359)
|.+.|||++-++.++- .....+...+-.+++.+. +|+|+--.| ++..+ .++.+.+.++ .-..--
T Consensus 85 A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l--~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 85 AIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL--RGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE--CHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec--CchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 9999999998886652 233456677777777654 588877433 22221 4445554432 345555
Q ss_pred EeccCc
Q 018253 215 VKECVG 220 (359)
Q Consensus 215 iK~ss~ 220 (359)
+|-+.+
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 888777
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.7 Score=37.78 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc------cCccCcCC----------CCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVG------GTTGEGQL----------MSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~------GstGE~~~----------LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|--|++.+.+.++.+.+.|++.+=+. =.-|.+-- .|.+.-.++++.+.+.. ++|++.
T Consensus 4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~l 81 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL 81 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 4445677899999999999999999999877 34444322 22334455555555443 678655
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
=+.-+..-. .-++.+.++++|+|++.+.. . ..|++.++.+.+.+. + ++++.+ |. -+.+.++.+.+
T Consensus 82 m~y~n~~~~~G~~~fi~~~~~aG~~giiipD--l---~~ee~~~~~~~~~~~g~~~i~~i~-P~-----T~~~~i~~i~~ 150 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPD--L---PPEEAEEFREAAKEYGLDLIFLVA-PT-----TPDERIKKIAE 150 (242)
T ss_pred EEecCHHHHhCHHHHHHHHHHCCCcEEEECC--C---CHHHHHHHHHHHHHcCCcEEEEeC-CC-----CCHHHHHHHHh
Confidence 334333222 25678888999999888842 1 136777777777776 4 555554 42 35677888875
Q ss_pred -CCCe
Q 018253 209 -SPNL 212 (359)
Q Consensus 209 -~pni 212 (359)
...+
T Consensus 151 ~~~~~ 155 (242)
T cd04724 151 LASGF 155 (242)
T ss_pred hCCCC
Confidence 4443
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.18 Score=48.68 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcC--------------------CCCH-HH---HHHHHHHHHHhhCCCcEE
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ--------------------LMSW-DE---HIMLIGHTVNCFGASVKV 130 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~--------------------~LT~-~E---r~~li~~~v~~~~grvpV 130 (359)
+.|.+.+..+++.+.+.|++||.+.-|+..-. -+|- .. -.+.+..+.+.+++++||
T Consensus 176 ~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 176 TPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 34556788889989999999998655553311 1111 11 156677777777778999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
|+.=|=.+.+++++... +|||+|++..-.++
T Consensus 256 ig~GGI~~~~da~~~l~----aGA~~V~i~ta~~~ 286 (299)
T cd02940 256 SGIGGIESWEDAAEFLL----LGASVVQVCTAVMN 286 (299)
T ss_pred EEECCCCCHHHHHHHHH----cCCChheEceeecc
Confidence 98666667888888763 99999999887665
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.8 Score=43.68 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=74.5
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+..+++.+ +.++--.+++++ +++
T Consensus 126 L~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-~~~ 204 (391)
T cd08209 126 LLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-PVF 204 (391)
T ss_pred eEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHH
Confidence 344556665458999999999999999998332111345667778999988877777653 344445678886 589
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|++++|+-+-.+.
T Consensus 205 em~~ra~~~~~~G~~~~mv~~~~~G 229 (391)
T cd08209 205 TLKEKARRLVEAGANALLFNVFAYG 229 (391)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccc
Confidence 9999999999999999999865553
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.3 Score=41.31 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+.+.++++.+.+.|++.+.+.-|+| .+++++-.++++.+.+..+. +++-++. +++..-++..+..|.++||
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~li~~l~~~~~~-~~~~~H~-Hn~~gla~an~laA~~aG~ 216 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDTVG---LATPEEVAELVKALREALPD-VPLGLHT-HNTLGLAVANSLAALEAGA 216 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechhcC---CcCHHHHHHHHHHHHHhCCC-CeEEEEe-CCCCChHHHHHHHHHHcCC
Confidence 57899999999999999999999999988 49999999999999987754 6666554 5788889999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 155 HAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 155 dav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+.+=..-.-.. ..+-|++..+++.
T Consensus 217 ~~id~s~~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 217 DRVDGSVNGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred CEEEeccccccccccCccHHHHHHHHHh
Confidence 99866655443 3456777777765
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.14 Score=50.59 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCc------------CCCCH-HH---HHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG------------QLMSW-DE---HIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~------------~~LT~-~E---r~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+..+++.+.+.|++||.+.+++-.. .-+|- .. -.+.+..+.+.+.+++|||+.=|=.+.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ 301 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSA 301 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 555668889999999999999999987321 12332 21 334566666667778998864444466
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDS 178 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~ 178 (359)
++++++.+ +|||+|++....+.. |. ...+.+.+++
T Consensus 302 eda~e~l~----aGAd~V~v~~~~~~~gP~~~~~i~~~L~~ 338 (344)
T PRK05286 302 EDAYEKIR----AGASLVQIYSGLIYEGPGLVKEIVRGLAR 338 (344)
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77776664 899999999887542 43 2334444433
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.5 Score=37.12 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=94.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHH
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 148 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~ 148 (359)
=+|+|-. +.+.+++..+.+.|+|+|+++||+|= |.++-.++++.+.+.. ++||+.=.|+.+.
T Consensus 4 ~iDP~k~---e~~~~ia~~v~~~gtDaI~VGGS~gv----t~~~~~~~v~~ik~~~--~lPvilfp~~~~~--------- 65 (205)
T TIGR01769 4 LIDPEKS---DEIEKIAKNAKDAGTDAIMVGGSLGI----VESNLDQTVKKIKKIT--NLPVILFPGNVNG--------- 65 (205)
T ss_pred ccCCCcH---HHHHHHHHHHHhcCCCEEEEcCcCCC----CHHHHHHHHHHHHhhc--CCCEEEECCCccc---------
Confidence 3444444 66777888999999999999999765 7788788888877753 7899986654321
Q ss_pred HHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCCC-----C----CCCCHHHHHHHh---
Q 018253 149 GFAVGMHAALHIN------PYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSRT-----G----QDIPPRVIHTMA--- 207 (359)
Q Consensus 149 a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia~a-~Pi--iiYn~P~~t-----g----~~ls~e~l~~La--- 207 (359)
..-+||++++.. |+|.-..|-+...-.++.... .|. ++-| |..+ + -++++|.....+
T Consensus 66 -i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~-~~~~v~~v~~a~~ip~~~~e~~~~~a~aa 143 (205)
T TIGR01769 66 -LSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVG-PGGAVGYVGKAREIPYNKPEIAAAYCLAA 143 (205)
T ss_pred -cCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEEC-CCCceeeecCcccCCCCCHHHHHHHHHHH
Confidence 125699998864 666433222222111222222 452 2333 2222 1 236777766654
Q ss_pred c-C-CCeEEEeccCch-----h----hHhhhhCCceEEEecCC---chhhhhhhhcCCceeecc
Q 018253 208 Q-S-PNLAGVKECVGN-----D----RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISV 257 (359)
Q Consensus 208 ~-~-pnivGiK~ss~d-----~----~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~ 257 (359)
+ + =.++-+.+.++- . ++++..+ ..++.|.. ..-....+..|+|+++.|
T Consensus 144 ~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~--~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 144 KYFGMKWVYLEAGSGASYPVNPETISLVKKASG--IPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3 2 245566664442 1 2334333 33444432 122233346799998754
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.14 Score=47.48 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=57.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHH------------------------HHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLV------------------------NMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li------------------------~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
..||+--. +++||+||.+.+++++ +++++.|+.-|+.-|.. .|..|..
T Consensus 87 ~~GVV~G~---lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-----~sa~eg~ 158 (241)
T COG3142 87 VQGVVLGA---LTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-----ASALEGL 158 (241)
T ss_pred CCcEEEee---ecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-----CchhhhH
Confidence 55555444 4569999999998875 67899999999977766 7899999
Q ss_pred HHHHHHHHhhCCCcEEEEecC
Q 018253 115 MLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg 135 (359)
..++..++.+++|+.|++|.|
T Consensus 159 ~~l~~li~~a~gri~Im~GaG 179 (241)
T COG3142 159 DLLKRLIEQAKGRIIIMAGAG 179 (241)
T ss_pred HHHHHHHHHhcCCEEEEeCCC
Confidence 999999999999999999766
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.7 Score=38.27 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC--CC-CHHHHHHHHHHHHhC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG--SN-STREAIHATEQGFAV 152 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg--~~-st~~ai~la~~a~~~ 152 (359)
...+...+++++..+.|++++.+....+-..+-+.++-.+.++.+++.+...+|+++-.. .. +.++..++++.+++.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA 141 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999987665422222367777888788776634689887442 22 577888888888999
Q ss_pred CCCEEEEcCCCC
Q 018253 153 GMHAALHINPYY 164 (359)
Q Consensus 153 Gadav~v~pP~y 164 (359)
|+|++=..++++
T Consensus 142 g~~~iK~~~~~~ 153 (201)
T cd00945 142 GADFIKTSTGFG 153 (201)
T ss_pred CCCEEEeCCCCC
Confidence 999998776654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.69 Score=45.13 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=70.0
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+..+.+.+++..+...|+|=|====.-........+||...+..+++. ++.++-..+++++.+.++
T Consensus 17 ~~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~e 96 (309)
T PF00016_consen 17 LGTIIKPKLGLSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDE 96 (309)
T ss_dssp EEEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHH
T ss_pred EccccCcceeecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecccccccHHH
Confidence 3444556544899999999999999999854322223456677899999888777764 344445577898878999
Q ss_pred HHHHHHHHHhCCCCEEEEcC
Q 018253 142 AIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~p 161 (359)
.+++++.++++|++++|+-+
T Consensus 97 m~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 97 MIERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp HHHHHHHHHHHTGSEEEEEH
T ss_pred HHHhhhhhhhhccchhhccc
Confidence 99999999999999999963
|
It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B .... |
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.3 Score=44.03 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=61.6
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc-------CCCCHHHHHHHHHHHHHhhCC---CcEE
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGA---SVKV 130 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~-------~~LT~~Er~~li~~~v~~~~g---rvpV 130 (359)
++.....|| |...| ..+++.+.++|++.+-.+--|.+- ...+.+++.++++.+.+..+| +.-+
T Consensus 181 ~i~Ie~L~p---df~~d----~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~ 253 (349)
T PLN02428 181 EILVEALVP---DFRGD----LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSI 253 (349)
T ss_pred CcEEEEeCc---cccCC----HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Confidence 455555566 33334 556677778888886655433332 346788888888888776433 3457
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
|+|.| .+.+|.++.++...++|+|-+.+
T Consensus 254 MvGLG-ET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 254 MLGLG-ETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred EEecC-CCHHHHHHHHHHHHHcCCCEEee
Confidence 88885 68888888888888888887655
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.2 Score=40.65 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC-----CCHHHHHHHHHHH
Q 018253 107 LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI--NPYYGK-----TSLEGLISHFDSV 179 (359)
Q Consensus 107 ~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~--pP~y~~-----~s~~~l~~yf~~I 179 (359)
....++..+-++...+. ..+.|+++++...+.++..+.++.+++.|+|++-+- .|.... .+.+.+.+..++|
T Consensus 79 ~~g~~~~~~~i~~~~~~-~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 79 NLGLDVWLQDIAKAKKE-FPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAV 157 (289)
T ss_pred CcCHHHHHHHHHHHHhc-cCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHH
Confidence 33455555555444332 136799999999999999999999999999999763 344321 2345666666666
Q ss_pred Hhc--CCeEEE
Q 018253 180 LSM--GPTIIY 188 (359)
Q Consensus 180 a~a--~PiiiY 188 (359)
.+. .||++=
T Consensus 158 r~~~~~pv~vK 168 (289)
T cd02810 158 KAAVDIPLLVK 168 (289)
T ss_pred HHccCCCEEEE
Confidence 665 466654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.88 E-value=2 Score=40.94 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=88.3
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|+.+. +.+.+.. +.+.+.+.++++.+.+.|++.|.+.=|.| .|++++-.++++.+.+..+..+|+=++. ++
T Consensus 119 k~~G~~v~-~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~-Hn 192 (266)
T cd07944 119 KEKGYEVF-FNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHA-HN 192 (266)
T ss_pred HHCCCeEE-EEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEe-CC
Confidence 44564322 3333322 37899999999999999999999999999 7999999999999988776557776654 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGK----TSLEGLISHFDSV 179 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~----~s~~~l~~yf~~I 179 (359)
+..-++..+..|.++|++.+=..---+.. .+-|+++.+++..
T Consensus 193 ~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 193 NLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHh
Confidence 89999999999999999988666544432 4456777776543
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.38 Score=48.71 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC---------------------cCCCCHHHH---HHHHHHHHHhhC-CCcEEE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE---------------------GQLMSWDEH---IMLIGHTVNCFG-ASVKVI 131 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE---------------------~~~LT~~Er---~~li~~~v~~~~-grvpVi 131 (359)
|...+..+++.+.++|++||.+.-|+.. +..=...++ .+.+..+.+.++ +++|||
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEE
Confidence 3344677888888999999995433332 222234443 344445555443 378998
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.=|=.+.++++++.+ +|||+|++..-.++
T Consensus 258 g~GGI~s~~da~e~i~----aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRDAAEFIL----LGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHHHHHHHH----hCCChheeeeeecc
Confidence 7555567888988874 99999999988665
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.7 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
+++.|.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ .+|+-++. +++.--++..+-.|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hn~~Gla~AN~laA~~a 223 (287)
T PRK05692 149 EGEVPPEAVADVAERLFALGCYEISLGDTIGV---GTPGQVRAVLEAVLAEFP-AERLAGHF-HDTYGQALANIYASLEE 223 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeccccCc---cCHHHHHHHHHHHHHhCC-CCeEEEEe-cCCCCcHHHHHHHHHHh
Confidence 56899999999999999999999999999995 689999999999888764 46776655 57888899999999999
Q ss_pred CCCEEEEcCCC----------CCCCCHHHHHHHHH
Q 018253 153 GMHAALHINPY----------YGKTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP~----------y~~~s~~~l~~yf~ 177 (359)
|++.+=..--- .....-|+++.+++
T Consensus 224 G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~ 258 (287)
T PRK05692 224 GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLH 258 (287)
T ss_pred CCCEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence 99988555432 22345577777765
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.79 Score=44.03 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=62.9
Q ss_pred HHHHHHHCCCCEEEEccCccCcCC-----CCHHHHHHHHHHHHHhhCC-CcEEEEecC------CCCHHHHHHHHHHHHh
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQL-----MSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 151 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~-----LT~~Er~~li~~~v~~~~g-rvpViagvg------~~st~~ai~la~~a~~ 151 (359)
-++..++.|++.+-+..+++|.+. .|.+|-.+.+..+++.+.. ...|.+++. ..+.+..+++++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 466677778888888887777655 5667776666666665432 244555544 2357777777777777
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+|+|.+.+. =.....++.++.++++.+.+.
T Consensus 159 ~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 159 LPIKRIMLP-DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred cCCCEEEec-CCCCCCCHHHHHHHHHHHHhh
Confidence 777765544 233445667777777777654
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.4 Score=43.50 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC---CCcE-EEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVK-VIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~---grvp-Viagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+. |+.+ ..+++++.+++
T Consensus 147 L~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~ 226 (450)
T cd08212 147 LLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTME 226 (450)
T ss_pred eEEEeccCccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHH
Confidence 3455556654589999999999999999883321113455667789999988877777542 3434 45589888999
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 018253 141 EAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~ 160 (359)
+.++.++.+.+.|++++|+-
T Consensus 227 em~~ra~~a~~~G~~~~mv~ 246 (450)
T cd08212 227 EMYKRAEFAKELGSPIIMHD 246 (450)
T ss_pred HHHHHHHHHHHhCCCeEeee
Confidence 99999999999999999987
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.1 Score=42.01 Aligned_cols=128 Identities=8% Similarity=0.044 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccC----c-----------CCCCHHHHHHHH----HHHHHhhCCCc
Q 018253 75 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----G-----------QLMSWDEHIMLI----GHTVNCFGASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~-------~li~~Gv~Gl~v~GstGE----~-----------~~LT~~Er~~li----~~~v~~~~grv 128 (359)
.++.+.++++++ +..++|.|||=+.+..|- | +--|.+.|.+++ +.+.+.++.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 355666655554 455799999988875442 1 122455665544 44444555566
Q ss_pred EEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 129 KVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGK-----TSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 129 pViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~-----~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
||.+=++ +.+.++++++++..++.|+|.+-+....+.. ........+.+.|.+. .||+. .
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~------~ 296 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA------V 296 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE------e
Confidence 7765332 4568999999999999999999876432211 0111123555666655 57654 2
Q ss_pred CCCCCHHHHHHHhc
Q 018253 195 GQDIPPRVIHTMAQ 208 (359)
Q Consensus 195 g~~ls~e~l~~La~ 208 (359)
|.-.+++..+++.+
T Consensus 297 G~i~t~~~a~~~l~ 310 (336)
T cd02932 297 GLITDPEQAEAILE 310 (336)
T ss_pred CCCCCHHHHHHHHH
Confidence 44457887777763
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.6 Score=41.77 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC--------HHH--HHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS--------TRE--AIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s--------t~~--ai~la 146 (359)
.++.+++++...+..+++||++-..-|--.. .. ...+..+|+++.... ..+ ..--.
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-------------~~-~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sv 112 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-------------KV-RDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSV 112 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-------------cc-cCCCCCeEEEecccccccCCCCCCccccccccH
Confidence 3677889999999999999998754443211 11 113456777763111 111 11226
Q ss_pred HHHHhCCCCEEEEcCCCCCCCC-----HHHHHHHHHHHHhc-----CCeEE----EeCCCCCCCC-----CCHHHHHHHh
Q 018253 147 EQGFAVGMHAALHINPYYGKTS-----LEGLISHFDSVLSM-----GPTII----YNVPSRTGQD-----IPPRVIHTMA 207 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s-----~~~l~~yf~~Ia~a-----~Piii----Yn~P~~tg~~-----ls~e~l~~La 207 (359)
+++.++|||+|-+.- |+.++ .++..++.++|.+. +|+++ |..+...... ..|+.+...+
T Consensus 113 e~a~~~GAdAVk~lv--~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~ 190 (340)
T PRK12858 113 RRIKEAGADAVKLLL--YYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTM 190 (340)
T ss_pred HHHHHcCCCEEEEEE--EeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHH
Confidence 889999999998873 33333 35677888888764 69766 5432211112 4566666544
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.63 E-value=5.6 Score=36.36 Aligned_cols=183 Identities=12% Similarity=0.036 Sum_probs=98.1
Q ss_pred CCceEEeeecCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE----e
Q 018253 59 ALRLITAIKTPYLPDGRFD-LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG----N 133 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID-~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia----g 133 (359)
.+|++...-|- +.|-++ .....++.+.+.+.|+.++-+ ++ . +.++.+.+. ..+|++. +
T Consensus 8 ~~~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~-~~--------~----~~~~~i~~~--~~iPil~~~~~~ 70 (219)
T cd04729 8 KGGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA-NG--------V----EDIRAIRAR--VDLPIIGLIKRD 70 (219)
T ss_pred cCCeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc-CC--------H----HHHHHHHHh--CCCCEEEEEecC
Confidence 56777776665 455554 457899999999999998653 11 1 233333332 3578763 2
Q ss_pred cCC--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 134 TGS--NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 134 vg~--~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
.-. .-.....+.++.+.++|||.+++..+....+..+.+.++++.+.+. .|++. . ..+++...++.+.
T Consensus 71 ~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~ 142 (219)
T cd04729 71 YPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKL 142 (219)
T ss_pred CCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHc
Confidence 210 0011235688999999999888876544333323455555555543 45554 2 1355555555542
Q ss_pred -CCeEEEec---------cC-chh----hHhhhhCCceEEEecC-CchhhhhhhhcCCceeecccccccHHHH
Q 018253 210 -PNLAGVKE---------CV-GND----RVEHYTGNGIVVWSGN-DDQCHDARWNHGATGVISVTSNLVPGMM 266 (359)
Q Consensus 210 -pnivGiK~---------ss-~d~----~l~~~~~~~~~v~~G~-d~~~~~~~l~~Ga~G~is~~an~~P~l~ 266 (359)
..++++.. .. .+. ++++..+-.+-.-.|- +..-+..++..|++|++.+.+-+-++..
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~ 215 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHI 215 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhH
Confidence 23333221 00 111 1222222223333344 2223344578899999988775555443
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=93.58 E-value=1 Score=42.46 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~G 153 (359)
.|.+.+.+.++...+.|+|-|.+... .. .+.++.+++.. ++||++ |+...+.+++.+.++.+.++|
T Consensus 153 ~~~~~~~~~~~~a~~~GADyikt~~~------~~----~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aG 220 (258)
T TIGR01949 153 RDPELVAHAARLGAELGADIVKTPYT------GD----IDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAG 220 (258)
T ss_pred ccHHHHHHHHHHHHHHCCCEEeccCC------CC----HHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666667789988775311 11 34444544433 577755 555557899999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
|+++.+..-.|...++.+..+-++.+..
T Consensus 221 a~Gia~g~~i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 221 AAGVAVGRNIFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred CcEEehhhHhhcCCCHHHHHHHHHHHHh
Confidence 9999999888887888777777777654
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.79 Score=43.14 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|++.+.++| ..|.+..++..|..+ .+++. .++|||++-|=.+.+++. .|.++|+|++++-.-.
T Consensus 137 ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~---~I~e~--~~vpVI~egGI~tpeda~----~AmelGAdgVlV~SAI 207 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR---IIIER--ADVPVIVDAGIGTPSDAA----QAMELGADAVLLNTAI 207 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH---HHHHh--CCCcEEEeCCCCCHHHHH----HHHHcCCCEEEEChHh
Confidence 4556667999987755 345556676655444 55554 369999987766666654 5566999999999888
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018253 164 YGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a 182 (359)
....++..+.+.|..-.++
T Consensus 208 t~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 208 AKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 7667788888888877654
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.6 Score=42.98 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCHHHHHHHHH-------HHHHCCCCEEEEccCcc----CcCC-----C------CHHHHHHHHHHHHHhhCCCc---EE
Q 018253 76 FDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----EGQL-----M------SWDEHIMLIGHTVNCFGASV---KV 130 (359)
Q Consensus 76 ID~~~l~~li~-------~li~~Gv~Gl~v~GstG----E~~~-----L------T~~Er~~li~~~v~~~~grv---pV 130 (359)
++.+.++++++ +..++|.|||-+.+..| +|.+ - |.+.|.+++..+++.+...+ +|
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v 221 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRV 221 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCce
Confidence 45555555554 45569999999987664 1111 1 34667776666666543222 45
Q ss_pred EEecC----------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC
Q 018253 131 IGNTG----------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI 198 (359)
Q Consensus 131 iagvg----------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l 198 (359)
.+=++ +.+.++++++++..++.|+|.+-+....+......-...+.+.|.+. .||+.-. + +
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G-----~--i 294 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAG-----G--Y 294 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEEC-----C--C
Confidence 44232 34789999999999999999998866654332222233344444443 5877642 2 3
Q ss_pred CHHHHHHHhcC
Q 018253 199 PPRVIHTMAQS 209 (359)
Q Consensus 199 s~e~l~~La~~ 209 (359)
+++..+++.+.
T Consensus 295 ~~~~a~~~l~~ 305 (338)
T cd02933 295 DAESAEAALAD 305 (338)
T ss_pred CHHHHHHHHHc
Confidence 38888887643
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.7 Score=45.79 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH---hhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN---CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~---~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
...+..+.+.|+++|.+.++-|-...-+..-- ..+..+.+ .+++++|||+.=|=.+-.++++ |..+|||++.
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~-~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~k----alaLGA~aV~ 298 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPI-EVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLK----ALCLGAKAVG 298 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHH-HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHH----HHHcCCCEEE
Confidence 34455778899999999887766532111111 12222233 3456899987444334445443 4558999999
Q ss_pred EcCCCCCCC---CHHHHHHHHHHHHhc
Q 018253 159 HINPYYGKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 159 v~pP~y~~~---s~~~l~~yf~~Ia~a 182 (359)
+-.|+.+.+ .++++..+++.+.+.
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~E 325 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDE 325 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999987643 678999999988765
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.85 Score=42.20 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCC--------CCHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGS--------NSTREAIHA 145 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViagvg~--------~st~~ai~l 145 (359)
.-+.+.....++..++.|++++.+--..|. ++.+|..+.++.+++.+. ..+|+|+-+.. .+. +.++.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~---~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i~~ 147 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGS---EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLIAY 147 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHHHH
Confidence 455677777788999999999866555553 346777777777776543 46899886532 223 55555
Q ss_pred -HHHHHhCCCCEEEE
Q 018253 146 -TEQGFAVGMHAALH 159 (359)
Q Consensus 146 -a~~a~~~Gadav~v 159 (359)
++.|.++|||.+-+
T Consensus 148 ~~~~a~~~GaD~Ik~ 162 (235)
T cd00958 148 AARIGAELGADIVKT 162 (235)
T ss_pred HHHHHHHHCCCEEEe
Confidence 89999999998887
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.5 Score=41.80 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=73.9
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++ ++.+
T Consensus 137 ~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~e 215 (407)
T PRK09549 137 LMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-RTFE 215 (407)
T ss_pred EEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-CHHH
Confidence 34556656559999999999999999998432222445677788999988877777654 344445668876 5789
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+++++.++++|+.++|+.+-.+
T Consensus 216 m~~ra~~a~~~G~~~~m~~~~~~ 238 (407)
T PRK09549 216 LKEKAKRAAEAGADALLFNVFAY 238 (407)
T ss_pred HHHHHHHHHHcCCCeEEEecccc
Confidence 99999999999999999986444
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.77 Score=45.82 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+++.|+++|.+.|+-|-..-.+..- ...+..+.+.+++++|||+-=|=.+-.+.+ .|-.+|||+|++-.|+.
T Consensus 237 A~~a~~~GvD~I~vsn~GGr~~d~~~~t-~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~----KALalGA~aV~vGr~~l 311 (364)
T PLN02535 237 AIKAVEVGVAGIIVSNHGARQLDYSPAT-ISVLEEVVQAVGGRVPVLLDGGVRRGTDVF----KALALGAQAVLVGRPVI 311 (364)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCCCChHH-HHHHHHHHHHHhcCCCEEeeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 4467789999999998887554444433 344445566666789999743333344443 45668999999999987
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.+.++.+.+.
T Consensus 312 ~~l~~~g~~gv~~~l~~l~~e 332 (364)
T PLN02535 312 YGLAAKGEDGVRKVIEMLKDE 332 (364)
T ss_pred hhhhhccHHHHHHHHHHHHHH
Confidence 64 3578888888777654
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.46 Score=45.36 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=69.6
Q ss_pred cCCCCCCCCCHHH-HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC----------
Q 018253 68 TPYLPDGRFDLEA-YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------- 136 (359)
Q Consensus 68 TPF~~dg~ID~~~-l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------- 136 (359)
+||. ..+.+.+. +++-++.+.+.|++|+-+=|. +|..+.++.+++ .++||+.++|=
T Consensus 83 ~pfg-~y~~~~~~av~~a~r~~~~aGa~aVkiEdg---------~~~~~~I~al~~---agIpV~gHiGL~pq~~~~~gg 149 (264)
T PRK00311 83 MPFG-SYQASPEQALRNAGRLMKEAGAHAVKLEGG---------EEVAETIKRLVE---RGIPVMGHLGLTPQSVNVLGG 149 (264)
T ss_pred CCCC-CccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHHH---CCCCEeeeecccceeecccCC
Confidence 4774 33356665 444454444499999999774 356666666654 47888754431
Q ss_pred --------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE-eCCCCCCCCCCHHHHHH
Q 018253 137 --------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY-NVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 137 --------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY-n~P~~tg~~ls~e~l~~ 205 (359)
.+.+++++.++..+++|||++++--+ ++ + + .+.|.++ .|+|=. -=|...|+-|=...+.-
T Consensus 150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~~-~-~---~~~i~~~l~iP~igiGaG~~~dgqvlv~~D~lG 220 (264)
T PRK00311 150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----PA-E-L---AKEITEALSIPTIGIGAGPDCDGQVLVWHDMLG 220 (264)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----CH-H-H---HHHHHHhCCCCEEEeccCCCCCceeeeHHhhcC
Confidence 22558899999999999999888543 22 2 2 2344444 465532 22445555544444443
Q ss_pred H
Q 018253 206 M 206 (359)
Q Consensus 206 L 206 (359)
+
T Consensus 221 ~ 221 (264)
T PRK00311 221 L 221 (264)
T ss_pred C
Confidence 3
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.9 Score=40.75 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
++.+.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+. +|+=++. +++..-++..+..|.++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~-~~l~~H~-Hn~~GlA~AN~laAi~aG 210 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDP-TPVGFHG-HNNLGLAVANSLAAVEAG 210 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCC-ceEEEEe-cCCcchHHHHHHHHHHhC
Confidence 568899999999999999999999999999 89999999999999887753 5665544 678888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 154 MHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 154 adav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
++.+=..---+. .++-|+++.+++.
T Consensus 211 a~~vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 211 ATRIDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred CCEEEeecccccCCcCCccHHHHHHHHHh
Confidence 998866544443 3556777777753
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.7 Score=41.24 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCHHHHHHHH-------HHHHHCCCCEEEEccCc----------------cCcCCCCHHHHHHHHHHHH----HhhCCC
Q 018253 75 RFDLEAYDDLV-------NMQIVNGAEGMIVGGTT----------------GEGQLMSWDEHIMLIGHTV----NCFGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li-------~~li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~li~~~v----~~~~gr 127 (359)
.++.+.+++++ ++..++|.|||=+.+.. .|+-- |.+.|.+++..++ +.++.+
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~avG~d 216 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAAVGPG 216 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHcCCC
Confidence 35555555554 45557999999887654 24322 5677877555444 445556
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.+|.+=++ +.+.++++++++..++.|+|.+-+..
T Consensus 217 ~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 217 FPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 77776443 46889999999999999999987654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.5 Score=43.55 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCEE-----EEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAA-----LHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 145 la~~a~~~Gadav-----~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+++|++.|..-. .+..|+..+.+.+.+.+.++++.+.
T Consensus 167 ~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 167 VALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM 209 (347)
T ss_pred HHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc
Confidence 4445555554331 1234555555555555555555554
|
|
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.6 Score=40.57 Aligned_cols=126 Identities=10% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc----C---cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC--------CHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG----E---GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------STR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG----E---~~~LT~~Er~~li~~~v~~~~grvpViagvg~~--------st~ 140 (359)
.+...++..+..+-+.||+.+++++.-- . ...-..+-=.+|++.+.+..+.. +-+|++.. +.+
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~--f~igva~~Pe~Hp~~~~~~ 148 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDY--FCIGVAGYPEGHPEAESVE 148 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCc--eEEEEEECCCCCCCCCCHH
Confidence 3567999999999999999987665321 1 11111122466777655543322 33444333 333
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeC-----------CCCCCCCCCHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNV-----------PSRTGQDIPPRVIHTM 206 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~-----------P~~tg~~ls~e~l~~L 206 (359)
.-++..+.=.++||| .+++-++| +.+.+.+|.+.+.++ .||+.==. ...+|+.++.+++++|
T Consensus 149 ~d~~~L~~Ki~aGA~-f~iTQ~~F---d~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l 224 (281)
T TIGR00677 149 LDLKYLKEKVDAGAD-FIITQLFY---DVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRL 224 (281)
T ss_pred HHHHHHHHHHHcCCC-Eeecccee---cHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHH
Confidence 334555544569999 55555677 567788888887764 46632111 2244666666666665
Q ss_pred h
Q 018253 207 A 207 (359)
Q Consensus 207 a 207 (359)
.
T Consensus 225 ~ 225 (281)
T TIGR00677 225 E 225 (281)
T ss_pred H
Confidence 4
|
This protein is an FAD-containing flavoprotein. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.18 E-value=7.5 Score=36.42 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=92.0
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
+|=+|+|-.++.+.+ +.+.+.|.|+|+++||+|= |.+.-.++++.+.+ . .+||+.=.|+.+
T Consensus 11 ~~liDP~k~~~~~~~----~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~-~--~lPvilfp~~~~-------- 71 (232)
T PRK04169 11 VTLLDPDKPLPDEAL----EAICESGTDAIIVGGSDGV----TEENVDELVKAIKE-Y--DLPVILFPGNIE-------- 71 (232)
T ss_pred EEEECCCCCCCHHHH----HHHHhcCCCEEEEcCCCcc----chHHHHHHHHHHhc-C--CCCEEEeCCCcc--------
Confidence 344566666666665 5677899999999999986 55566667766665 3 589988655421
Q ss_pred HHHHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHH-hcCC--eEEEeCCCCCCC-------CCCHHHHH---HHh
Q 018253 147 EQGFAVGMHAALHIN------PYYGKTSLEGLISHFDSVL-SMGP--TIIYNVPSRTGQ-------DIPPRVIH---TMA 207 (359)
Q Consensus 147 ~~a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia-~a~P--iiiYn~P~~tg~-------~ls~e~l~---~La 207 (359)
...-+||++++.. |+|.-..+-+-..-+...- +..| -++-|.-+.++. +++.+.+. .|+
T Consensus 72 --~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA 149 (232)
T PRK04169 72 --GISPGADAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALA 149 (232)
T ss_pred --ccCcCCCEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHH
Confidence 1224589988864 5664333322222222111 1245 234443332222 34433333 344
Q ss_pred -c-CC-CeEEEeccCch-----hh----HhhhhCCceEEEecCC--ch-hhhhhhhcCCceeeccccc
Q 018253 208 -Q-SP-NLAGVKECVGN-----DR----VEHYTGNGIVVWSGND--DQ-CHDARWNHGATGVISVTSN 260 (359)
Q Consensus 208 -~-~p-nivGiK~ss~d-----~~----l~~~~~~~~~v~~G~d--~~-~~~~~l~~Ga~G~is~~an 260 (359)
+ .. .++.+-.+++- .. +++..+. ..++.|.. +. -....+..|++|++.|++-
T Consensus 150 ~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~-~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai 216 (232)
T PRK04169 150 AEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDI-TPLIYGGGIRSPEQARELMAAGADTIVVGNII 216 (232)
T ss_pred HHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCC-CcEEEECCCCCHHHHHHHHHhCCCEEEEChHH
Confidence 2 22 46667766542 12 2232222 13344432 11 2233477899999988654
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=42.21 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|++.+..+| ..|.+..++..|. ++.+++.. ++|||++.|=.+.+++ ..|.++|+|++++-.=.
T Consensus 137 ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~---i~~i~e~~--~vpVIveaGI~tpeda----~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIGSGLGLLNPYN---LRIIIEQA--DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAI 207 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHH---HHHHHHhc--CCeEEEeCCCCCHHHH----HHHHHcCCCEEEEChHh
Confidence 4556667999987755 3455566766554 55556652 6899998776666665 45566999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018253 164 YGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a 182 (359)
....++..+.+.|..-.++
T Consensus 208 tka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 208 AVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 7657788888888877653
|
|
| >cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II | Back alignment and domain information |
|---|
Probab=93.10 E-value=2 Score=43.88 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=80.8
Q ss_pred cCCccccc-CCceE-----EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh-
Q 018253 51 RTSAEDIK-ALRLI-----TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC- 123 (359)
Q Consensus 51 ~~~~~~~~-~~Gi~-----~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~- 123 (359)
++..+.++ +.|+. |-+-|-+++.--+.-+.+.+++..+...| |-|====.-........+||...+-.+++.
T Consensus 139 ~fGi~G~R~~lgv~~~~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a 217 (439)
T cd08211 139 SVNISDMWKVLGRPEVDGGYIAGTIIKPKLGLRPKPFAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRA 217 (439)
T ss_pred CCchhHHHHHhCCCCcCCCceEEeecCCcccCCHHHHHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 45555543 67777 77778788875699999999999999999 743211134566677889999666665554
Q ss_pred ---hCCCcEEEEecCCCCHHHHHHHHHHHHhCCC-----CEEEEcCC
Q 018253 124 ---FGASVKVIGNTGSNSTREAIHATEQGFAVGM-----HAALHINP 162 (359)
Q Consensus 124 ---~~grvpViagvg~~st~~ai~la~~a~~~Ga-----dav~v~pP 162 (359)
++.++-..+++++.++++.++.++.+++.|+ .++|+-+-
T Consensus 218 ~~eTG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~~ 264 (439)
T cd08211 218 QDETGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDGY 264 (439)
T ss_pred HHhhCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECcc
Confidence 4444334569998889999999999998876 88888643
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=93.08 E-value=7 Score=35.86 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=107.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
..++++.+-.. |.+....+++.|++.|++.+=+.= +.++..+.++...+..+ + +++|+|+--
T Consensus 7 ~~~liaVlr~~-------~~e~a~~~~~al~~~Gi~~iEit~--------~t~~a~~~i~~l~~~~~-~--~~vGAGTVl 68 (204)
T TIGR01182 7 EAKIVPVIRID-------DVDDALPLAKALIEGGLRVLEVTL--------RTPVALDAIRLLRKEVP-D--ALIGAGTVL 68 (204)
T ss_pred hCCEEEEEecC-------CHHHHHHHHHHHHHcCCCEEEEeC--------CCccHHHHHHHHHHHCC-C--CEEEEEeCC
Confidence 35566665433 889999999999999999876543 44667778888877664 3 677777655
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s 218 (359)
+.+. ++.|.++||+.+ +.|.+ ..++.++-++ |+.|...|. ++|..+.+-.+.. .--+|.-
T Consensus 69 ~~~~---a~~a~~aGA~Fi--vsP~~----~~~v~~~~~~---------~~i~~iPG~-~TptEi~~A~~~G-a~~vKlF 128 (204)
T TIGR01182 69 NPEQ---LRQAVDAGAQFI--VSPGL----TPELAKHAQD---------HGIPIIPGV-ATPSEIMLALELG-ITALKLF 128 (204)
T ss_pred CHHH---HHHHHHcCCCEE--ECCCC----CHHHHHHHHH---------cCCcEECCC-CCHHHHHHHHHCC-CCEEEEC
Confidence 5544 677778999876 45666 3566666542 233334464 5554444433321 1225543
Q ss_pred Cch-----hhHhhhhC--CceEEE--ecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHH
Q 018253 219 VGN-----DRVEHYTG--NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFP 284 (359)
Q Consensus 219 s~d-----~~l~~~~~--~~~~v~--~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~ 284 (359)
-.+ ..++.+.+ +++.++ .|-+..-+..++.+|+.++..| ++++|+.. .++++..++.++...
T Consensus 129 PA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~G-s~L~~~~~---~~~~~~~~i~~~a~~ 199 (204)
T TIGR01182 129 PAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGG-SWLVPKDL---IAAGDWDEITRLARE 199 (204)
T ss_pred CchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEC-hhhcCchh---hccccHHHHHHHHHH
Confidence 222 22333322 344444 3665555667788999877655 45555322 233444444444333
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=93.07 E-value=3.4 Score=41.87 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=70.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHHHH
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREAI 143 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ai 143 (359)
|-+++.--++.+.+.+++..+...|+|=|====.-.....-..+||...+-.+++.+ +.++-..+++++ ++.+.+
T Consensus 144 tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~ 222 (407)
T TIGR03332 144 SIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTFDLK 222 (407)
T ss_pred eEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-CHHHHH
Confidence 334433348999999999999999988432112234455667899998887777754 344445668875 678899
Q ss_pred HHHHHHHhCCCCEEEEcCCCCC
Q 018253 144 HATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.+++.|++++|+-+-.+.
T Consensus 223 ~ra~~a~~~G~~~~mv~~~~~G 244 (407)
T TIGR03332 223 DKAKRAAELGADVLLFNVFAYG 244 (407)
T ss_pred HHHHHHHHhCCCEEEEeccccC
Confidence 9999999999999999866554
|
Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691). |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=6.6 Score=35.95 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
|.+.....++.+++.|+..+=+.= +..+..+.++...+..+ + +++|+|+--+.+ .++.|.++||+-
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~--------~tp~a~~~I~~l~~~~~-~--~~vGAGTVl~~e---~a~~ai~aGA~F 79 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITL--------RTPAALDAIRAVAAEVE-E--AIVGAGTILNAK---QFEDAAKAGSRF 79 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--------CCccHHHHHHHHHHHCC-C--CEEeeEeCcCHH---HHHHHHHcCCCE
Confidence 889999999999999999876543 44556777877777663 3 788888765554 567788899985
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCch-----hhHhhhhC--
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTG-- 229 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d-----~~l~~~~~-- 229 (359)
++ .|.+ .+++.++-++ |+.|...|. ++|..+.+-.+..- .-+|.--.+ ..++.+.+
T Consensus 80 iv--SP~~----~~~vi~~a~~---------~~i~~iPG~-~TptEi~~A~~~Ga-~~vK~FPa~~~GG~~yikal~~pl 142 (201)
T PRK06015 80 IV--SPGT----TQELLAAAND---------SDVPLLPGA-ATPSEVMALREEGY-TVLKFFPAEQAGGAAFLKALSSPL 142 (201)
T ss_pred EE--CCCC----CHHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCC-CEEEECCchhhCCHHHHHHHHhhC
Confidence 43 4655 3667776553 334434454 66655544333221 125643221 22333321
Q ss_pred CceEEE--ecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHH
Q 018253 230 NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKL 282 (359)
Q Consensus 230 ~~~~v~--~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l 282 (359)
+++.++ .|-+..-+..++.+|+..+++ .++++|+.. .++++..++.++.
T Consensus 143 p~~~l~ptGGV~~~n~~~~l~ag~~~~~g-gs~l~~~~~---~~~~~~~~i~~~a 193 (201)
T PRK06015 143 AGTFFCPTGGISLKNARDYLSLPNVVCVG-GSWVAPKEL---VAAGDWAGITKLA 193 (201)
T ss_pred CCCcEEecCCCCHHHHHHHHhCCCeEEEE-chhhCCchh---hhcccHHHHHHHH
Confidence 344444 366555566778888886666 556666432 3344444444433
|
|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.2 Score=40.43 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.++++.++++|++++.+.-+.|....+|.++.++.+ +.+++.+.. .|++.++.... .. +.....+.|+|.
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~cG~~-~~---~l~~~~~~g~d~ 247 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-CPTILHICGNT-TP---ILEYIAQCGFDG 247 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEECCCC-hh---HHHHHHHcCCCe
Confidence 3455666778999999999998888888999998776 455666655 67888754433 22 233444567776
Q ss_pred EEE
Q 018253 157 ALH 159 (359)
Q Consensus 157 v~v 159 (359)
+.+
T Consensus 248 ~~~ 250 (326)
T cd03307 248 ISV 250 (326)
T ss_pred ecc
Confidence 543
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.01 E-value=1 Score=43.90 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH--------------------HHHHHHHHHHHhhCCCcEEEEecC-
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD--------------------EHIMLIGHTVNCFGASVKVIGNTG- 135 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~--------------------Er~~li~~~v~~~~grvpViagvg- 135 (359)
|.+.+....+.+.+.|+|||.+.=|+........+ -=.+++..+.+.+++++|||. +|
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIG-vGG 249 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIG-VGG 249 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEE-ecC
Confidence 78889999999999999999988877744422111 235677777778888999884 54
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHHHHh
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDSVLS 181 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~Ia~ 181 (359)
=.|.++|+|... +||+++.+-.-.++. +. -++|.+...+..+
T Consensus 250 I~s~~DA~E~i~----aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 250 IETGEDALEFIL----AGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred cCcHHHHHHHHH----cCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 346788999887 899999998886654 43 3556666555544
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=93.00 E-value=8.3 Score=36.48 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=108.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEE
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpVi 131 (359)
-||---|.-|++...++++.+++.|+|-|=++=-.+. ++ -+|.+.-.++++.+.+. -++|++
T Consensus 5 i~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~--~~~p~i 82 (250)
T PLN02591 5 IPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ--LSCPIV 82 (250)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC--CCCCEE
Confidence 3555678899999999999999999997754433222 21 23444445555554432 357876
Q ss_pred EecCCCCHH--HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 132 GNTGSNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 132 agvg~~st~--~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
.=...|..- -.=++.+.++++|+|++++.. ...++..+|.+...+. +..+..=.| .-+.+-++++++
T Consensus 83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----LP~ee~~~~~~~~~~~gl~~I~lv~P-----tt~~~ri~~ia~ 152 (250)
T PLN02591 83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----LPLEETEALRAEAAKNGIELVLLTTP-----TTPTERMKAIAE 152 (250)
T ss_pred EEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHHHHHcCCeEEEEeCC-----CCCHHHHHHHHH
Confidence 555544322 234578899999999999862 2347778887777665 554444444 345677888874
Q ss_pred -CCCeEEE---eccCch-----h---h-Hhhhh-CCceEEEecCCch---hhhhhhhcCCceeecccc
Q 018253 209 -SPNLAGV---KECVGN-----D---R-VEHYT-GNGIVVWSGNDDQ---CHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pnivGi---K~ss~d-----~---~-l~~~~-~~~~~v~~G~d~~---~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+ .-.++. . . +.+.. ..+.-++.|..-. -....+..|+||+|.|++
T Consensus 153 ~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 153 ASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 4555544 212221 1 1 11111 1355666766422 223346789999998865
|
|
| >PRK01008 queuine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.88 Score=45.53 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEE-EEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpV-iagvg~~st~~ai~la~~a~~ 151 (359)
.|.+|.+-=++-++.+.+.+.+|+.++|+.|| +.+|..++++.+....+...|. +.|+|. ..+.++ +.+
T Consensus 205 QGG~~~dLR~~Sa~~l~~~~~~GyaIGG~vge----~~~~~~~il~~~~~~LP~~kPRyLmGvG~--P~di~~----~V~ 274 (372)
T PRK01008 205 HGGIDPDQRKIGCKFVEDLPFDGSAIGGSLGK----NLQEMVEVVGVTTSNLSKERPVHLLGIGD--LPSIWA----TVG 274 (372)
T ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC----CHHHHHHHHHHHHhhCCCCCCeEEecCCC--HHHHHH----HHH
Confidence 57788888888889999999999999999998 8899999999999999888886 669985 555554 667
Q ss_pred CCCCEEEEcCCC
Q 018253 152 VGMHAALHINPY 163 (359)
Q Consensus 152 ~Gadav~v~pP~ 163 (359)
.|+|-.=.+-|.
T Consensus 275 ~GvD~FDcv~Pt 286 (372)
T PRK01008 275 FGIDSFDSSYPT 286 (372)
T ss_pred hCCCeeeeccch
Confidence 999977666554
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.1 Score=43.49 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc----------cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CC-CCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~----------GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g~-~st~~a 142 (359)
=|.+.+.+-++.+.+.|+++|=+| +..|.+..-+.+.-.++++.+++.++ +||-+-+ +- .+.+++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHH
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHH
Confidence 477889999988777799998766 44788888888888999999998776 5665533 32 357889
Q ss_pred HHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCe-EEEeCCCCCCCCCCHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPT-IIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~Pi-iiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+++++..++.|++++.|-+=.- ...+...=.+++..|.+..+| +++| |--.+++.+.++.+
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~N-----GdI~s~~d~~~~~~ 203 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIAN-----GDIFSPEDAERMLE 203 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEE-----SS--SHHHHHHHCC
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEc-----CccCCHHHHHHHHH
Confidence 9999999999999998886321 111222235566666666554 4555 44466766666654
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.5 Score=44.83 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------------
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------------ 135 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg------------ 135 (359)
+||..-+.=..+.+++-++.+.+.|++|+-+=|+ +|..+.++.+++ .++||+.++|
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~---------~~~~~~I~al~~---agipV~gHiGL~pq~~~~~gg~ 147 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG---------AEVAETIRALVD---AGIPVMGHIGLTPQSVNQLGGY 147 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHHH---cCCCeeccccccceeeeccCCc
Confidence 4775333333444555555444499999999775 366666666554 4678773332
Q ss_pred ------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE-eCCCCCCCCCCHHHHHHH
Q 018253 136 ------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY-NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 136 ------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY-n~P~~tg~~ls~e~l~~L 206 (359)
....+++++.++.++++|||++.+--+ + .+. .++|.++ .|+|=. -=|...|+-+=...+.-+
T Consensus 148 ~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~-~~~----~~~i~~~v~iP~igiGaG~~~dgqvlv~~D~lG~ 218 (254)
T cd06557 148 KVQGKTEEEAERLLEDALALEEAGAFALVLECV----P-AEL----AKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL 218 (254)
T ss_pred eeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C-HHH----HHHHHHhCCCCEEEeccCCCCCceeehHHhhcCC
Confidence 222678999999999999999988644 2 232 3445554 476533 334445554444333333
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.54 Score=47.21 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=63.0
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
..+++.|++||.+-+..|-...-... -..++..+++.+++++|||+.=|=.+-.+.+ .|..+|||++++--|+.+
T Consensus 268 ~~a~~~G~d~I~vsnhGGr~~d~~~~-t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~----KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 268 RRAVEAGVDGVVVSNHGGRQVDGSIA-ALDALPEIVEAVGDRLTVLFDSGVRTGADIM----KALALGAKAVLIGRPYAY 342 (383)
T ss_pred HHHHHCCCCEEEEcCCCCcCCCCCcC-HHHHHHHHHHHhcCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHHHH
Confidence 35667999999999888754321222 2335556666677789999854433333332 345689999999999875
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018253 166 K---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 166 ~---~s~~~l~~yf~~Ia~a 182 (359)
. ..++++.++++.+.+.
T Consensus 343 ~l~~~G~~gv~~~l~~l~~E 362 (383)
T cd03332 343 GLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 4 4788898888887664
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.83 Score=44.79 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHH-HHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEH-IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er-~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
+.+.+.+.++.+.+.|+++|-++-+. ......+.+|+ .++++.+.+.+ ++||++=++. ...+..+.++.+++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p-~~~~~~~~a~~l~~ 186 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSP-FFSALAHMAKQLDA 186 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCC-CccCHHHHHHHHHH
Confidence 45778888888888899999887763 22234444444 46677766655 5899998764 35588999999999
Q ss_pred CCCCEEEEcCCCC
Q 018253 152 VGMHAALHINPYY 164 (359)
Q Consensus 152 ~Gadav~v~pP~y 164 (359)
+|+|++.+..-.+
T Consensus 187 ~Gadgi~~~nt~~ 199 (325)
T cd04739 187 AGADGLVLFNRFY 199 (325)
T ss_pred cCCCeEEEEcCcC
Confidence 9999999987654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=7.8 Score=35.71 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=102.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.-.++++.+-.. |.+....+++-|++.|+.-+=+.= +...-.+.++...+..+.+-.+++|+|+-
T Consensus 11 ~~~~vi~vir~~-------~~~~a~~~~~al~~~Gi~~iEit~--------~~~~a~~~i~~l~~~~~~~p~~~vGaGTV 75 (213)
T PRK06552 11 KANGVVAVVRGE-------SKEEALKISLAVIKGGIKAIEVTY--------TNPFASEVIKELVELYKDDPEVLIGAGTV 75 (213)
T ss_pred HHCCEEEEEECC-------CHHHHHHHHHHHHHCCCCEEEEEC--------CCccHHHHHHHHHHHcCCCCCeEEeeeeC
Confidence 346777776544 889999999999999999876543 33446677777777654321388899876
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
.+.+ .++.|.++||+.++ .|.+ .+++.+|-++. .+|+ ..|. .+++.+.+..+ -..++++=
T Consensus 76 ~~~~---~~~~a~~aGA~Fiv--sP~~----~~~v~~~~~~~--~i~~-------iPG~-~T~~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 76 LDAV---TARLAILAGAQFIV--SPSF----NRETAKICNLY--QIPY-------LPGC-MTVTEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCHH---HHHHHHHcCCCEEE--CCCC----CHHHHHHHHHc--CCCE-------ECCc-CCHHHHHHHHHcCCCEEEEC
Confidence 6655 55777889998766 5665 36777774421 1333 2354 46655555443 34555550
Q ss_pred --ccCchhhHhhhh---C-CceEEEecCCchhhhhhhhcCCceeecccc
Q 018253 217 --ECVGNDRVEHYT---G-NGIVVWSGNDDQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 217 --~ss~d~~l~~~~---~-~~~~v~~G~d~~~~~~~l~~Ga~G~is~~a 259 (359)
+..+-..++.+. + -.|....|-...-+..++..|++++..+.+
T Consensus 137 Pa~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 137 PGSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred CcccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchH
Confidence 111212233221 1 234445577656666778899998765543
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.77 E-value=4.2 Score=40.26 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCc----------------cCcCCCCHHHHHHHHHHH----HHhhCCCcEEEEec-----
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTT----------------GEGQLMSWDEHIMLIGHT----VNCFGASVKVIGNT----- 134 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~li~~~----v~~~~grvpViagv----- 134 (359)
.+.+-+.+..++|.|||=+.|.. .|+-- |.+.|.+++..+ .+.++.+.+|.+=+
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG-SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCC-CHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence 34444455567999999887732 22222 456666555444 44455566665322
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCEEEEcC-----CCCC--C-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH
Q 018253 135 --GSNSTREAIHATEQGFAVGMHAALHIN-----PYYG--K-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV 202 (359)
Q Consensus 135 --g~~st~~ai~la~~a~~~Gadav~v~p-----P~y~--~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~ 202 (359)
+..+.++++++++..+++|+|.+-+.. |... . ..+.....+.+.|.+. .||+. .|.-.+++.
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~ 290 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA------SNRINTPEV 290 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE------cCCCCCHHH
Confidence 235889999999999999999998842 2110 0 1111234455666665 46554 344557888
Q ss_pred HHHHhc
Q 018253 203 IHTMAQ 208 (359)
Q Consensus 203 l~~La~ 208 (359)
++++.+
T Consensus 291 a~~~i~ 296 (353)
T cd02930 291 AERLLA 296 (353)
T ss_pred HHHHHH
Confidence 888764
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.5 Score=40.14 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=72.6
Q ss_pred HHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~Gad 155 (359)
++...+.|++.+-+.-+++|. ...|.+|-.+.+..+++.+. ....|.+++ ...+.+...++++.+.++|+|
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN 156 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC
Confidence 666677899999998888874 45677886666666666543 235665553 445688999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
.+.+. =.....+++++.++++.+.+..
T Consensus 157 ~i~l~-Dt~G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 157 RVGIA-DTVGIATPRQVYELVRTLRGVV 183 (262)
T ss_pred EEEEC-CcCCCCCHHHHHHHHHHHHHhc
Confidence 76554 4455678899999999998773
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=92.73 E-value=5.7 Score=39.21 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCccC----------------cCCCCHHHHHHHHHHHHHh----hCCC
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNC----FGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstGE----------------~~~LT~~Er~~li~~~v~~----~~gr 127 (359)
++..+.+.++++. ..++|.|||-+.+.-|- +-- |.+.|.+++..+++. ++.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHHcCCC
Confidence 3566666665554 45699999999885442 211 567776666665554 4444
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCC-CCEEEEcCC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVG-MHAALHINP 162 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~G-adav~v~pP 162 (359)
.+|.+=++ +.+.+|++++++..+++| +|.+-+...
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 45443233 256899999999999998 899988543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.6 Score=40.22 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cCcc--C--cCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------CCCHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG-GTTG--E--GQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------SNSTREAIH 144 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~-GstG--E--~~~LT~~Er~~li~~~v~~~~grvpViagvg------~~st~~ai~ 144 (359)
.|...+...+..+.+.|++.++++ |-.. + ...-..+.=.+|++...+. .++..|-+... ..+.++-++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~-~~~f~ig~a~~Peghp~~~~~~~~~~ 148 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNE-FGDFDIGVAAYPEKHPEAPNLEEDIE 148 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCeeEEEEeCCCCCCCCCCHHHHHH
Confidence 589999999999999999998844 4221 1 1112222356677766554 34433222221 234556667
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P-----------~~tg~~ls~e~l~~La~ 208 (359)
..++=.++||| .+++-|.| +.+.+.+|.+.+.+. .||+.==.| ...|+.++.+++++|.+
T Consensus 149 ~L~~K~~aGA~-f~iTQ~~f---d~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~ 222 (272)
T TIGR00676 149 NLKRKVDAGAD-YAITQLFF---DNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEK 222 (272)
T ss_pred HHHHHHHcCCC-eEeecccc---CHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHh
Confidence 66666788999 55555777 567777777776554 465421111 14577777777777764
|
This protein is an FAD-containing flavoprotein. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.89 Score=45.29 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=65.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.+..+++.|++||.+.|.-|-...-...- ..++..+++.+++++|||+.=|=.+-.+.+ .|..+|||++++--|
T Consensus 235 ~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t-~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~----KALALGAdaV~iGrp 309 (366)
T PLN02979 235 EDARIAIQAGAAGIIVSNHGARQLDYVPAT-ISALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRP 309 (366)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCCCchhH-HHHHHHHHHHhCCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHH
Confidence 345678899999999999988653322221 445555556677889999844422233322 245689999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++.+.++.+.+.
T Consensus 310 ~L~~la~~G~~Gv~~~l~~l~~E 332 (366)
T PLN02979 310 VVFSLAAEGEAGVRKVLQMLRDE 332 (366)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 8753 4678888888877765
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.55 Score=47.15 Aligned_cols=92 Identities=12% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
..+++.|+++|.|.|..|-...-...- ...+..+++.+++++|||+.=|=.+-.+.+ .|..+|||+|++--|+.+
T Consensus 260 ~~a~~~Gvd~I~Vs~hGGr~~d~~~~t-~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~----KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 260 RDAVRFGADGIVVSNHGGRQLDGVLSS-ARALPAIADAVKGDITILADSGIRNGLDVV----RMIALGADTVLLGRAFVY 334 (381)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccH-HHHHHHHHHHhcCCCeEEeeCCcCcHHHHH----HHHHcCcCceeEhHHHHH
Confidence 367789999999999887643222221 234444455666789999844322333332 345689999999999876
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018253 166 K---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 166 ~---~s~~~l~~yf~~Ia~a 182 (359)
. ..++++.++++.+.+.
T Consensus 335 ~la~~G~~gv~~~l~~l~~E 354 (381)
T PRK11197 335 ALAAAGQAGVANLLDLIEKE 354 (381)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 4 4789999999888765
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=92.63 E-value=3.3 Score=38.78 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.++++.+.++|++|+++.. |..||..++++.+.+. .+..+.-+.-.++.+.++..... +.|.-.+|.+
T Consensus 93 ~~~fi~~~~~aG~~giiipD-------l~~ee~~~~~~~~~~~---g~~~i~~i~P~T~~~~i~~i~~~-~~~~vy~~s~ 161 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPD-------LPPEEAEEFREAAKEY---GLDLIFLVAPTTPDERIKKIAEL-ASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHHCCCcEEEECC-------CCHHHHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHhh-CCCCEEEEeC
Confidence 57788889999999998863 3456666666665542 23344444444444444433321 3455555666
Q ss_pred CCCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCC-HHHHHHHhcCC
Q 018253 161 NPYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIP-PRVIHTMAQSP 210 (359)
Q Consensus 161 pP~y~~~s--~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls-~e~l~~La~~p 210 (359)
.|.+...+ .+.+.++.+.+.+.. +.|-..|..++ ++.+.++.+..
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~~A 209 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAKYA 209 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHccC
Confidence 67664322 355667777776642 22222344566 55777776543
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.2 Score=42.06 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=87.4
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|+.+.. .+- ..++.|.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+ +|+=++. ++
T Consensus 120 ~~~G~~v~~-~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~--~~l~~H~-Hn 191 (259)
T cd07939 120 KDRGLFVSV-GAE-DASRADPDFLIEFAEVAQEAGADRLRFADTVG---ILDPFTTYELIRRLRAATD--LPLEFHA-HN 191 (259)
T ss_pred HHCCCeEEE-eec-cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEEe-cC
Confidence 345765443 332 35679999999999999999999999999999 7899999999999888764 6765544 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDSV 179 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~~I 179 (359)
+..-+...+..|.++|++.+=..---+. ...-|+++.+++..
T Consensus 192 ~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 192 DLGLATANTLAAVRAGATHVSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHHh
Confidence 8888999999999999998755543332 24567777777654
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.67 Score=43.39 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=+-.|.++..++.+ ..+.|+|++|+
T Consensus 147 ~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~i 221 (241)
T PRK14024 147 DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCART--DAPVVASGGVSSLDDLRALAE-LVPLGVEGAIV 221 (241)
T ss_pred cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhh-hccCCccEEEE
Confidence 4556677778999999999999988766443 466667777654 589999877778888776643 23579999999
Q ss_pred cCCCCC-CCCHHHHHHHHH
Q 018253 160 INPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~ 177 (359)
-.-.|. +.+.+++.++++
T Consensus 222 gra~~~g~~~~~~~~~~~~ 240 (241)
T PRK14024 222 GKALYAGAFTLPEALAVVR 240 (241)
T ss_pred eHHHHcCCCCHHHHHHHhc
Confidence 988774 467777766643
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=92.50 E-value=8.2 Score=35.15 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.+...++.+...+.|+++|-+.---+-+. =+. +.++.+.+.+ ++||+++-+-.+. +.++.+.++|||+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~-g~~----~~~~~i~~~v--~iPi~~~~~i~~~----~~v~~~~~~Gad~ 97 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQ-GSL----EDLRAVREAV--SLPVLRKDFIIDP----YQIYEARAAGADA 97 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccC-CCH----HHHHHHHHhc--CCCEEECCeecCH----HHHHHHHHcCCCE
Confidence 344566777778889999998863222111 011 2344444433 6899976432222 3688899999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCeEEEeccCc-----hh----hH
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVG-----ND----RV 224 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~~-pnivGiK~ss~-----d~----~l 224 (359)
+.+..+... .+.+.++++..... + +++..+ +.+.+.+..+. ..++|+=...+ +. ++
T Consensus 98 v~l~~~~~~---~~~~~~~~~~~~~~g~~~~v~v~---------~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l 165 (217)
T cd00331 98 VLLIVAALD---DEQLKELYELARELGMEVLVEVH---------DEEELERALALGAKIIGINNRDLKTFEVDLNTTERL 165 (217)
T ss_pred EEEeeccCC---HHHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHH
Confidence 999877652 35555555544332 2 222222 45556666653 45666542111 11 22
Q ss_pred hhhhCCceEEEe--cCC--chhhhhhhhcCCceeecccccc
Q 018253 225 EHYTGNGIVVWS--GND--DQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 225 ~~~~~~~~~v~~--G~d--~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.+....+..++. |-. +.+ ...+.+|++|++.+.+-+
T Consensus 166 ~~~~~~~~pvia~gGI~s~edi-~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 166 APLIPKDVILVSESGISTPEDV-KRLAEAGADAVLIGESLM 205 (217)
T ss_pred HHhCCCCCEEEEEcCCCCHHHH-HHHHHcCCCEEEECHHHc
Confidence 222212344443 332 233 344788999999887644
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=92.49 E-value=3.1 Score=40.49 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc------C--cC-CC-CHHHHHHHHHHHHHhhCCCcEEEEecC---CCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG------E--GQ-LM-SWDEHIMLIGHTVNCFGASVKVIGNTG---SNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG------E--~~-~L-T~~Er~~li~~~v~~~~grvpViagvg---~~st~~a 142 (359)
-|.+.+.+.++.+.+.|++||=++++.- + +. .+ ..+--.++++.+++.++ +||.+-+. ..+..+.
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~g~~~~~~~~ 149 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRIGWDDAHINA 149 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEcccCCCcchH
Confidence 3668888999988889999998865531 1 11 12 23444455666555543 78877542 1223467
Q ss_pred HHHHHHHHhCCCCEEEEcC
Q 018253 143 IHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~p 161 (359)
+++++.+++.|+|++.+..
T Consensus 150 ~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 8999999999999998753
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.2 Score=43.98 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+..+.+.+.++++.+.+.|++.|++.=|.| .|++++-.++++.+.+..++.+||=++. +++..-++..+..|.++|
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAG---ALLPEDVRDRVRALRAALKPDTQVGFHG-HNNLGLGVANSLAAVEAG 214 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEEEe-CCCcchHHHHHHHHHHhC
Confidence 568999999999999999999999999999 7899999999999998886677776554 678889999999999999
Q ss_pred CCEEEEcCC
Q 018253 154 MHAALHINP 162 (359)
Q Consensus 154 adav~v~pP 162 (359)
|+.+=..--
T Consensus 215 a~~iD~Sl~ 223 (337)
T PRK08195 215 ATRIDGSLA 223 (337)
T ss_pred CCEEEecCh
Confidence 997755533
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.73 Score=45.18 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC------------CCCH-HHH---HHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------LMSW-DEH---IMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~------------~LT~-~Er---~~li~~~v~~~~grvpViagvg~~st 139 (359)
.+.+.+..+++.+.++|++||.+.+++.+.. -+|- ..+ .+.+..+.+.+++++||++.=|=.+.
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~ 292 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSG 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCH
Confidence 3456788899999999999999887654221 1221 222 46666777777777898864334467
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++++++.. +|||+|++....+.
T Consensus 293 ~da~e~l~----aGAd~V~vg~~~~~ 314 (327)
T cd04738 293 EDAYEKIR----AGASLVQLYTGLVY 314 (327)
T ss_pred HHHHHHHH----cCCCHHhccHHHHh
Confidence 77777764 79999999988764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=92.43 E-value=6.6 Score=36.45 Aligned_cols=181 Identities=20% Similarity=0.212 Sum_probs=97.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
|=+|+|-.++.+.+.+. +.+.|.|+|+++||+|.. -+.++-.++++.. .. .+||+.=.++.+.-
T Consensus 4 ~~iDP~K~~~~~~~~~~---~~~~gtdai~vGGS~~v~--~~~~~~~~~ik~~---~~-~~Pvilfp~~~~~i------- 67 (219)
T cd02812 4 TKLDPDKELVDEEIAKL---AEESGTDAIMVGGSDGVS--STLDNVVRLIKRI---RR-PVPVILFPSNPEAV------- 67 (219)
T ss_pred eeeCCCCCCCHHHHHHH---HHhcCCCEEEECCccchh--hhHHHHHHHHHHh---cC-CCCEEEeCCCcccc-------
Confidence 33455555665554433 334999999999999986 4555555555543 22 58998766653211
Q ss_pred HHHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHH--hc-CC--eEEEeCCCC----C--CCCCCHHHHHHHh---
Q 018253 148 QGFAVGMHAALHIN------PYYGKTSLEGLISHFDSVL--SM-GP--TIIYNVPSR----T--GQDIPPRVIHTMA--- 207 (359)
Q Consensus 148 ~a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia--~a-~P--iiiYn~P~~----t--g~~ls~e~l~~La--- 207 (359)
.-|||++++.. |+|.-..+-+-...+..+. .. .| -++-|.-.. + ....+++.+..-+
T Consensus 68 ---~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aa 144 (219)
T cd02812 68 ---SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAA 144 (219)
T ss_pred ---CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHH
Confidence 46799998864 5664433333333333311 11 45 233333211 1 2247788777654
Q ss_pred c-C-CCeEEEeccCch--hh----HhhhhCCceEEEecCC----chhhhhhhhcCCceeeccccccc-HHHHHHH
Q 018253 208 Q-S-PNLAGVKECVGN--DR----VEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLV-PGMMREL 269 (359)
Q Consensus 208 ~-~-pnivGiK~ss~d--~~----l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~-P~l~~~l 269 (359)
+ . =.++.+-.|... .. +++... +..++.|.. +.. ...+.+|+++++.|++-+- |+.+.++
T Consensus 145 e~~g~~ivyLe~SG~~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a-~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 145 EYLGMPIVYLEYSGAYGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQA-KEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred HHcCCeEEEeCCCCCcCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHH-HHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 3 2 346655532222 22 233321 344555542 233 3446679999998876554 4554443
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.87 Score=46.17 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc-------------CcCCCCH----HHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG-------------EGQLMSW----DEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG-------------E~~~LT~----~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++.+.+..+++.+.+.|++||++.-||- |.--||= .-=.+++..+.+.+++++|||+-=|=.+
T Consensus 273 l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~s 352 (409)
T PLN02826 273 LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSS 352 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 4455788889999999999998876552 1111231 1125566777777888899886555557
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGK 166 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~ 166 (359)
-+++++..+ +||++|.+-..+++.
T Consensus 353 g~Da~e~i~----AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 353 GEDAYKKIR----AGASLVQLYTAFAYE 376 (409)
T ss_pred HHHHHHHHH----hCCCeeeecHHHHhc
Confidence 888888877 899999998876553
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.4 Score=39.54 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=59.9
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++..++.|++++...++. .++++...+ . +++++.|+. +. +.++.|.+.|+|.+.+. |
T Consensus 67 ~~~~~a~~~Ga~~i~~p~~~-----------~~~~~~~~~-~--~~~~i~gv~--t~----~e~~~A~~~Gad~i~~~-p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVSPGLD-----------PEVVKAANR-A--GIPLLPGVA--TP----TEIMQALELGADIVKLF-P 125 (190)
T ss_pred HHHHHHHHcCCCEEEcCCCC-----------HHHHHHHHH-c--CCcEECCcC--CH----HHHHHHHHCCCCEEEEc-C
Confidence 35667788999999865554 235544433 2 468898887 34 44566678999999973 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---CeEEEeCCCCCCCCCCHHHHHHHhcCC
Q 018253 163 YYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSP 210 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a~---PiiiYn~P~~tg~~ls~e~l~~La~~p 210 (359)
.+.. ..+|++.+.... |++. +| .++++.+.++.+.+
T Consensus 126 ----~~~~-g~~~~~~l~~~~~~~p~~a------~G-GI~~~n~~~~~~~G 164 (190)
T cd00452 126 ----AEAV-GPAYIKALKGPFPQVRFMP------TG-GVSLDNAAEWLAAG 164 (190)
T ss_pred ----Cccc-CHHHHHHHHhhCCCCeEEE------eC-CCCHHHHHHHHHCC
Confidence 1222 466777776543 3332 23 46788888887654
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.8 Score=41.97 Aligned_cols=104 Identities=10% Similarity=0.004 Sum_probs=73.1
Q ss_pred HHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEe---cCCCCHHHHHHHHHHHHhCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGN---TGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViag---vg~~st~~ai~la~~a~~~Ga 154 (359)
-++..+++|++.+-+..++++. ..+|.+|-.+.+..+++.+.. ...|.++ .+..+.+..+++++.+.++|+
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga 159 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGA 159 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCC
Confidence 3666778899998888888885 467778777766666665431 2345444 344578888999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
|.+.+.-- ....+++++.+.++.+.+. .|+-++
T Consensus 160 ~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 160 DRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred CEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 87666533 3566788888888888776 455443
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.2 Score=39.81 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecC-CCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTG-SNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg-~~st~~a 142 (359)
=|.+.+.+.++.+.+.|+++|=+|-+. |-...-..+.-.++++.+++.+ ++||.+ ..| ..+..++
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR~G~~~~~~~~ 151 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNC 151 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEEccccCCcchH
Confidence 366888888888788999998876652 3334445666778888887766 345544 233 2345689
Q ss_pred HHHHHHHHhCCCCEEEEcC
Q 018253 143 IHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~p 161 (359)
+++++.+++.|+|++.+.+
T Consensus 152 ~~~a~~le~~G~d~i~vh~ 170 (321)
T PRK10415 152 VEIAQLAEDCGIQALTIHG 170 (321)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 9999999999999998753
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.3 Score=40.59 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=68.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEecC------CCCHHHHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG------SNSTREAIHATEQGF 150 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagvg------~~st~~ai~la~~a~ 150 (359)
+-++..++.|++.+-+..++++. ...|.+|-.+.+...++.+. ....|.++.- ..+.+..+++++.+.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 44666788999999988888765 55676776666666666543 1235544211 235677788888888
Q ss_pred hCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 151 AVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
++|+|.+.+. =.+...+++++.++++.+.+..|
T Consensus 162 ~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 162 EAGADWLVLC-DTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred hCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhCC
Confidence 8898876543 44556678888888888877633
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.6 Score=42.11 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
-|.+.+.+.++.+.+.|+++|=++-+. |....-..+.-.++++.+.+.+ ++||++=+.. ...+..+++
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~Pv~vKl~~-~~~~~~~~a 186 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIPVIAKLTP-NITDIREIA 186 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCCeEEECCC-CchhHHHHH
Confidence 466888999988877899999886553 4444455666777887777655 5899998764 556889999
Q ss_pred HHHHhCCCCEEEEcCCCCC
Q 018253 147 EQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~ 165 (359)
+.+++.|+|++.+++-.+.
T Consensus 187 ~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 187 RAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHcCCCEEEEeccccc
Confidence 9999999999999887654
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.8 Score=38.85 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=88.6
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~ 137 (359)
-.|+-.. +++- ..++.|.+-+.++++.+.+.|++.|.+.=|+|- +++++-.++++.+.+..+. ++|+-++. ++
T Consensus 125 ~~G~~v~-~~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~l~~H~-Hn 198 (268)
T cd07940 125 SHGLDVE-FSAE-DATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPNIKVPISVHC-HN 198 (268)
T ss_pred HcCCeEE-Eeee-cCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCCCceeEEEEe-cC
Confidence 4564433 3443 355689999999999999999999999999996 8999999999998887753 36665554 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDSVL 180 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~~Ia 180 (359)
+..-++..+..|.++|++.+=..---. ....-|+++.+++...
T Consensus 199 ~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 199 DLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 888899999999999999885554333 3356688887776554
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.82 E-value=6 Score=37.81 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
.+..|.+.+.++++.+.+.|++.|.+.-|+|- +++.+-.++++.+.+..+ ++|+-++. +++.--++..+-.|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hnd~GlA~AN~laA~~a 217 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFP-DEKLALHF-HDTRGQALANILAALEA 217 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCC-CCeEEEEE-CCCCChHHHHHHHHHHh
Confidence 45789999999999999999999999999997 789999999999888764 47777765 56888899999999999
Q ss_pred CCCEEEEcCC------C----CCCCCHHHHHHHHH
Q 018253 153 GMHAALHINP------Y----YGKTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP------~----y~~~s~~~l~~yf~ 177 (359)
||+.+=..-- + -...+-|+++.+++
T Consensus 218 Ga~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~ 252 (274)
T cd07938 218 GVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLE 252 (274)
T ss_pred CCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHH
Confidence 9998865432 1 22345566666654
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.3 Score=44.25 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+..+++.|++||.+-|.-|-...-... =..++..+++.+.+++|||+.=|=-+-.+.+ .|..+|||++++.-|+
T Consensus 237 dA~~a~~~Gvd~I~VsnhGGrqld~~~~-t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~----KALALGA~aV~iGr~~ 311 (367)
T PLN02493 237 DARIAIQAGAAGIIVSNHGARQLDYVPA-TISALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPV 311 (367)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCchh-HHHHHHHHHHHhCCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHH
Confidence 3456788999999999998864322211 2455555666677899999843322222222 2456899999999998
Q ss_pred CCC---CCHHHHHHHHHHHHhc
Q 018253 164 YGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+. ..++++.++++.+.+.
T Consensus 312 l~~l~~~G~~gv~~~l~~l~~e 333 (367)
T PLN02493 312 VFSLAAEGEAGVRKVLQMLRDE 333 (367)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 754 4678888887777654
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.5 Score=40.77 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++.+.+.|++.+.+.+-+-++..--. ..++++.+.+.+ ++||++.=+-.+.+++.+..+. -|+|++++.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~--~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~---~g~dgv~vg 223 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGY--DLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEE---GGADAALAA 223 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHh---CCCCEEEEe
Confidence 456677788999999999765533221000 234455555544 6899986665667776655442 599999999
Q ss_pred CCCCC-CCCHHHHHHHHH
Q 018253 161 NPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 161 pP~y~-~~s~~~l~~yf~ 177 (359)
.+.|. ..+.+++.++.+
T Consensus 224 ~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 224 SIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHcCCCCHHHHHHHHh
Confidence 99875 467677666654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.8 Score=43.52 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
+.-+.+.+.++++.+.+.|+++|-++=|. |....-+.+.-.++++.+.+.+ ++||++=++- +..+..+
T Consensus 122 ~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKLsP-n~t~i~~ 198 (385)
T PLN02495 122 EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA--TVPVWAKMTP-NITDITQ 198 (385)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh--cCceEEEeCC-ChhhHHH
Confidence 34567889999999888999999986642 2223345555566666665544 6899999885 4556889
Q ss_pred HHHHHHhCCCCEEEEcCCCCC
Q 018253 145 ATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~ 165 (359)
.++.+.+.|||++.+++-.+.
T Consensus 199 ia~aa~~~Gadgi~liNT~~~ 219 (385)
T PLN02495 199 PARVALKSGCEGVAAINTIMS 219 (385)
T ss_pred HHHHHHHhCCCEEEEecccCc
Confidence 999999999999999987664
|
|
| >PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.1 Score=41.90 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
|..|.+.-.+.++.+.+.+++|+.+.| +.|| +.+|+.++++.+.+..+...|.++ .|..++.+.+.++ .+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~----~~~~~~~~l~~i~~~lp~~~pr~l-~G~~~P~~i~~~v----~~ 133 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGE----EKEERLEILEAIINNLPPDKPRYL-LGVGTPEEILEAV----YL 133 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSS----HHHHHHHHHHHHHHCS-TTS-EEE-TTB-SHHHHHHHH----HT
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCC----CHHHHHHHHHHHHhhCCcccceec-cCCCCHHHHHHHH----Hc
Confidence 777788778888888887899999998 7777 889999999999998888888876 4444677776664 59
Q ss_pred CCCEEEEc
Q 018253 153 GMHAALHI 160 (359)
Q Consensus 153 Gadav~v~ 160 (359)
|+|-+-..
T Consensus 134 GvD~fDs~ 141 (238)
T PF01702_consen 134 GVDLFDSS 141 (238)
T ss_dssp T--EEEES
T ss_pred CCcEEcch
Confidence 99965554
|
4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A .... |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.60 E-value=4 Score=38.52 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
...+.++.|++.|. .+.+..|+..+.+.+.+.+.++.+.+..+
T Consensus 111 ~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 153 (259)
T cd07939 111 QLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGA 153 (259)
T ss_pred HHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCC
Confidence 34455566666665 35555566666666666666666665533
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=91.58 E-value=5.9 Score=39.01 Aligned_cols=70 Identities=17% Similarity=0.058 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCC---CcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~g---rvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.++++.++++|++.+.+.-+++. .||.++..+.+ +.+++.++. .+|++.++.+.+ .+.....+.|+
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~-----~~~~~~~~~~~ 254 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG-----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH-----HHHHHHHhcCC
Confidence 44555667799999988887765 79999988766 344554432 468888765542 33455666788
Q ss_pred CEEE
Q 018253 155 HAAL 158 (359)
Q Consensus 155 dav~ 158 (359)
|++.
T Consensus 255 ~~i~ 258 (345)
T PLN02433 255 DVIG 258 (345)
T ss_pred CEEE
Confidence 8554
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.7 Score=42.89 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..+.+.+.++++.+.+.|++.|++.=|.| .|++++-.++++.+.+..+..+||=++. +++..-++..+..|.++||
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aGa 214 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAG---AMLPDDVRDRVRALKAVLKPETQVGFHA-HHNLSLAVANSIAAIEAGA 214 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEe-CCCCchHHHHHHHHHHhCC
Confidence 56788899999988889999999999988 6888888888888888776567765544 5778888888888889999
Q ss_pred CEEEEcCC
Q 018253 155 HAALHINP 162 (359)
Q Consensus 155 dav~v~pP 162 (359)
+.+=..--
T Consensus 215 ~~iD~Sl~ 222 (333)
T TIGR03217 215 TRIDASLR 222 (333)
T ss_pred CEEEeecc
Confidence 88755433
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.2 Score=39.75 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++..++++.+.++|+|.+.+. ......+++++.++++.+.+.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLK-DTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec-hhcCCcCHHHHHHHHHHHHHh
Confidence 455555555555555665544432 334444555555555555544
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.5 Score=43.27 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHH------------------------HHHHCCCCEEEEccCccCcCCCCHHHH
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVN------------------------MQIVNGAEGMIVGGTTGEGQLMSWDEH 113 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~------------------------~li~~Gv~Gl~v~GstGE~~~LT~~Er 113 (359)
+-.|.=..++=.+++||+||.+.++++++ .|++.|++.|+.-|.. -+..|-
T Consensus 82 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~-----~~a~~g 156 (201)
T PF03932_consen 82 RELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGA-----PTALEG 156 (201)
T ss_dssp HHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTS-----SSTTTC
T ss_pred HHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCC-----CCHHHH
Confidence 34455555566667799999999988765 5778999999987766 233344
Q ss_pred HHHHHHHHHhhCCCcEEEEec--CCCCHHHHHH
Q 018253 114 IMLIGHTVNCFGASVKVIGNT--GSNSTREAIH 144 (359)
Q Consensus 114 ~~li~~~v~~~~grvpViagv--g~~st~~ai~ 144 (359)
.+.++..++.+++++.|++|- ...+..+-++
T Consensus 157 ~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 157 IENLKELVEQAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHH
Confidence 555666677788999999974 4555544443
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=91.35 E-value=7.2 Score=36.91 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~ 122 (359)
++++.++.+.++|++|+++. -|..+|..++.+.+.+
T Consensus 94 G~~~F~~~~~~aGv~Gviip-------DLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP-------DLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC-------CCCHHHHHHHHHHHHH
Confidence 77888999999999999987 3555666666655443
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.34 E-value=3.9 Score=40.11 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....++.+++.|++.|.+..+.|-. +...++++...+..+ ++||++|.. .+.+.++.+.++|||++.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~-----~~~~~~i~~ik~~~p-~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS-----VYVIEMIKFIKKKYP-NVDVIAGNV-----VTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc-----HHHHHHHHHHHHHCC-CceEEECCC-----CCHHHHHHHHhcCCCEEEE
Confidence 4567888899999999887666532 456677777776554 688988543 2345566777899999987
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.2 Score=42.82 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=54.4
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC-------CCCHHHHHHHHHHHHHhhCCCc----EEEEecCCCCHHHHHHHHHHHHh
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ-------LMSWDEHIMLIGHTVNCFGASV----KVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~-------~LT~~Er~~li~~~v~~~~grv----pViagvg~~st~~ai~la~~a~~ 151 (359)
..++.+.++|++-+--|=-|.|-. .-|.+++.++++.+.+...+++ -+|+|.|. +.+|.++.++++.+
T Consensus 243 e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLre 321 (398)
T PTZ00413 243 KSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLRT 321 (398)
T ss_pred HHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHHH
Confidence 455667778888776665555532 2478888888888877533443 35888774 78888899999999
Q ss_pred CCCCEEEE
Q 018253 152 VGMHAALH 159 (359)
Q Consensus 152 ~Gadav~v 159 (359)
+|+|-+-+
T Consensus 322 lGVDivtI 329 (398)
T PTZ00413 322 AGVSAVTL 329 (398)
T ss_pred cCCcEEee
Confidence 99887766
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.5 Score=43.12 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCC--------C------------CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQL--------M------------SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~--------L------------T~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
...+..+.+.|+++|.+.|.-|=.+. . .... ...+..+.+... ++|||+.=|=.+-.+
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t-~~~l~~~~~~~~-~ipIiasGGIr~~~d 269 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT-AASLLEVRSALP-DLPLIASGGIRNGLD 269 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccH-HHHHHHHHHHcC-CCcEEEECCCCCHHH
Confidence 35666778899999999886441100 0 0000 122223333333 789988444344444
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 182 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a 182 (359)
+++. ..+|||+|++..|++.. ..++++..|++.+.+.
T Consensus 270 v~ka----l~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~e 308 (326)
T cd02811 270 IAKA----LALGADLVGMAGPFLKAALEGEEAVIETIEQIIEE 308 (326)
T ss_pred HHHH----HHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4443 34799999999997532 2788899999988765
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=8.3 Score=36.12 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++-+++...+.....- ..-.++++.+.+.+ ++||+++=|-.+.+++.++.. .|++++++-.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~--~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt 104 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR--DTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLR----AGADKVSINS 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC--cchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHH----cCCCEEEECh
Confidence 345555668999999999988632211 34566777776665 589999877766766665544 7999999987
Q ss_pred CCCCCC
Q 018253 162 PYYGKT 167 (359)
Q Consensus 162 P~y~~~ 167 (359)
..+..|
T Consensus 105 ~~l~~p 110 (253)
T PRK02083 105 AAVANP 110 (253)
T ss_pred hHhhCc
Confidence 776544
|
|
| >PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=13 Score=35.99 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-----cCCCCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----TGSNSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er~~li~~~v~~~~grvpViag-----vg~~st~~ai~la 146 (359)
.|...+...+..+.+.||+.+++++.= |+....... ++++...+.-.-++- +++ ..+.+.++-++..
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~---dLv~li~~~~~~~i~-va~yPeghp~~~~~~~dl~~L 169 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYAS---DLVTLLKSVADFDIS-VAAYPEVHPEAKSAQADLINL 169 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHH---HHHHHHHHhCCCccc-eeeCCCCCCCCCCHHHHHHHH
Confidence 499999999999999999998887632 333333333 444433332111221 111 1244566677777
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P-----------~~tg~~ls~e~l~~La~ 208 (359)
++=.++||| .+++-|+| +.+.+.+|.+.+.++ +||+.==.| ..+|+.++.+++++|.+
T Consensus 170 k~K~~aGA~-~~iTQ~~F---d~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~ 241 (296)
T PRK09432 170 KRKVDAGAN-RAITQFFF---DVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDG 241 (296)
T ss_pred HHHHHcCCC-eeeccccc---chHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHh
Confidence 777889998 56666777 667788888888765 576543222 23466666666666654
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.01 E-value=17 Score=35.66 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC------CCCCC-HHHHHHHHHHHHhc
Q 018253 110 WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY------YGKTS-LEGLISHFDSVLSM 182 (359)
Q Consensus 110 ~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~------y~~~s-~~~l~~yf~~Ia~a 182 (359)
.++..+.++.+.+.. ++||++++...+.++-.+.++.++++|+|++-+--.. ....+ ++.+.+..+++.++
T Consensus 84 ~~~~~~~i~~~~~~~--~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 84 PEEYLELIRRAKRAV--SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 455555555443322 5799999988899999999999999999999663211 11111 13345566666654
Q ss_pred --CCeEEEeCCC
Q 018253 183 --GPTIIYNVPS 192 (359)
Q Consensus 183 --~PiiiYn~P~ 192 (359)
.||++==.|.
T Consensus 162 ~~iPv~vKl~p~ 173 (325)
T cd04739 162 VTIPVAVKLSPF 173 (325)
T ss_pred cCCCEEEEcCCC
Confidence 5888775553
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.9 Score=39.60 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++|.+.|+..+..+|+ .|-+.-|...+-.+++. +. .++|||++.|=.+.+++ ..|.++|+|++++..-
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~---e~--~~vpVivdAGIgt~sDa----~~AmElGaDgVL~nSa 220 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII---EN--AKIPVIIDAGIGTPSEA----SQAMELGASGVLLNTA 220 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH---Hc--CCCcEEEeCCcCCHHHH----HHHHHcCCCEEeecce
Confidence 567788999999999995 67777787777666653 32 46999998876667665 4567799999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 018253 163 YYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~ 181 (359)
.....++.++.+-|+.-.+
T Consensus 221 IakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 221 VAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 7766777777777765544
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=90.89 E-value=7.1 Score=38.87 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=74.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
.+-++..+++|++.+-+.-++++.+ ..|.+|-.+.+..+++.+. ....|.++. +..+.+..++.++.+.++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC
Confidence 3447778889999999988888764 4577776666665555443 223454443 445788899999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
|+|.+.+..- ....+++++.+.++.+.+..|
T Consensus 154 g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~ 184 (363)
T TIGR02090 154 GADRINIADT-VGVLTPQKMEELIKKLKENVK 184 (363)
T ss_pred CCCEEEEeCC-CCccCHHHHHHHHHHHhcccC
Confidence 9998776643 466788999999999987744
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.2 Score=39.23 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCH-HHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~-~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
.++.+.+.|++++++.+....+...+. ....++++.+.+.. ++||+++=|=.+.+++.+.. +.|+|+|++...
T Consensus 114 ~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~ 187 (236)
T cd04730 114 EARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAAL----ALGADGVQMGTR 187 (236)
T ss_pred HHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHH----HcCCcEEEEchh
Confidence 345566789999887543211222111 12345566665554 57988754433334444333 489999999988
Q ss_pred CCCCC
Q 018253 163 YYGKT 167 (359)
Q Consensus 163 ~y~~~ 167 (359)
.....
T Consensus 188 l~~~~ 192 (236)
T cd04730 188 FLATE 192 (236)
T ss_pred hhcCc
Confidence 77554
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=4.3 Score=39.13 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=62.2
Q ss_pred HHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEec---------CCCCHHHHHHHHHHH
Q 018253 85 VNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---------GSNSTREAIHATEQG 149 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagv---------g~~st~~ai~la~~a 149 (359)
++.-++.|++.+-+.-+++|. ...|.+|-.+.++.+++.+.. ...|.+.+ +..+.+..+++++.+
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERL 164 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 355667899988888888874 456667766666666665432 23443221 133577788888888
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.++|+|.+.+.- .....++.++.+.++.+.+.
T Consensus 165 ~~~G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 165 FALGCYEISLGD-TIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHcCCcEEEecc-ccCccCHHHHHHHHHHHHHh
Confidence 888887655543 33445677777777777765
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.1 Score=41.96 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-----cCcCCCCHHH-HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT-----GEGQLMSWDE-HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst-----GE~~~LT~~E-r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+++|-++-+. +. ...+.++ ..++++.+.+.+ ++||++=.+. ...+..+.++.++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~-~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p-~~~~~~~~a~~l~ 187 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDI-SGAEVEQRYLDILRAVKSAV--SIPVAVKLSP-YFSNLANMAKRLD 187 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC-ccccHHHHHHHHHHHHHhcc--CCcEEEEeCC-CchhHHHHHHHHH
Confidence 45677788888888999999886442 22 2233433 346666666654 5899998764 3457889999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
+.|+|++.+..-.+
T Consensus 188 ~~G~dgI~~~n~~~ 201 (334)
T PRK07565 188 AAGADGLVLFNRFY 201 (334)
T ss_pred HcCCCeEEEECCcC
Confidence 99999998876543
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.7 Score=40.54 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
|.+.+.++++...+.|+++|.++...- +...++. +.++.+++.++ +||++..- .+ .+.++.+.++|+|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~----~~i~~l~~~~~--~pvivK~v-~s----~~~a~~a~~~G~d 195 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTW----DDLAWLRSQWK--GPLILKGI-LT----PEDALRAVDAGAD 195 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCH----HHHHHHHHhcC--CCEEEeec-CC----HHHHHHHHHCCCC
Confidence 678888899999999999988865433 3333323 45666666554 68887522 22 4558888999999
Q ss_pred EEEEcC
Q 018253 156 AALHIN 161 (359)
Q Consensus 156 av~v~p 161 (359)
++.+..
T Consensus 196 ~I~v~~ 201 (299)
T cd02809 196 GIVVSN 201 (299)
T ss_pred EEEEcC
Confidence 999874
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.71 E-value=13 Score=37.33 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHH-------HCCCCEEEEccCc-cC----cC-----------CCCHHHHHHHHHHHHHhhCC----
Q 018253 74 GRFDLEAYDDLVNMQI-------VNGAEGMIVGGTT-GE----GQ-----------LMSWDEHIMLIGHTVNCFGA---- 126 (359)
Q Consensus 74 g~ID~~~l~~li~~li-------~~Gv~Gl~v~Gst-GE----~~-----------~LT~~Er~~li~~~v~~~~g---- 126 (359)
..+..+.+..+++... ++|.|||=+.+.. |- |. -=|.+.|.+++..+++.+..
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 3467777777766555 7999999887644 43 11 11568888887777776543
Q ss_pred CcEEEEecC---------------------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----CCC---HHHH-HHHH
Q 018253 127 SVKVIGNTG---------------------SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTS---LEGL-ISHF 176 (359)
Q Consensus 127 rvpViagvg---------------------~~st~~ai~la~~a~~~Gadav~v~pP~y~-----~~s---~~~l-~~yf 176 (359)
+.||-+=++ +.+.++++++++..++.|+|.+-+....|. .+. .++. ..+-
T Consensus 218 ~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T cd02931 218 DFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYC 297 (382)
T ss_pred CceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHH
Confidence 345544222 346899999999999999999988754321 111 1111 2233
Q ss_pred HHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 177 DSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 177 ~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+.+.+. .||+. +|---+++...++.+
T Consensus 298 ~~ik~~~~~pvi~------~G~i~~~~~~~~~l~ 325 (382)
T cd02931 298 KALKEVVDVPVIM------AGRMEDPELASEAIN 325 (382)
T ss_pred HHHHHHCCCCEEE------eCCCCCHHHHHHHHH
Confidence 334443 57664 243347888777654
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=90.67 E-value=3.1 Score=39.47 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc-----C--cCCCCHHHHHHHHHHHHHhhCCCcE-EEEec--
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG-----E--GQLMSWDEHIMLIGHTVNCFGASVK-VIGNT-- 134 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG-----E--~~~LT~~Er~~li~~~v~~~~grvp-Viagv-- 134 (359)
.++|.+| ....+++ -++|++.+++..+.+ - .-.+|.+|-..-++.+++.+ ..| |++-.
T Consensus 15 ~~~~ayD-------~~sA~l~---e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~f 82 (254)
T cd06557 15 VMLTAYD-------YPTAKLA---DEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPF 82 (254)
T ss_pred EEEeCCC-------HHHHHHH---HHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCC
Confidence 5567765 2233333 357999999653433 1 23689999999888888765 357 77644
Q ss_pred C--CCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeE
Q 018253 135 G--SNSTREAIHATEQGFA-VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTI 186 (359)
Q Consensus 135 g--~~st~~ai~la~~a~~-~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~Pii 186 (359)
+ .+|.+++++.+.+..+ +||+++-+-- +++..+-.+.+.++ .|++
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~aVkiEd-------~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGADAVKLEG-------GAEVAETIRALVDAGIPVM 131 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEEcC-------cHHHHHHHHHHHHcCCCee
Confidence 3 3578999999777766 9999998863 46788888888887 6887
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=7.1 Score=37.57 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=75.2
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCcc-CcC-CCCHHH-HHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQ-LMSWDE-HIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstG-E~~-~LT~~E-r~~li~~~v~~~~grvpViagv 134 (359)
+.||+-..+=-|.+.|. .|.+...++++.+++.|++-|=++|-.+ -+. ..|.+| ..+++..+.......+| +.|
T Consensus 4 iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISI 81 (279)
T PRK13753 4 VFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSI 81 (279)
T ss_pred EEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEE
Confidence 45666555555877776 6999999999999999999999999444 332 345554 55454443333322344 355
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
-+...+ .++.|.++|||-+.=+.-. +.+++ ++.+++. .|+++-+..
T Consensus 82 DT~~~~----va~~al~aGadiINDVsg~----~d~~~---~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 82 DSFQPE----TQRYALKRGVGYLNDIQGF----PDPAL---YPDIAEADCRLVVMHSA 128 (279)
T ss_pred ECCCHH----HHHHHHHcCCCEEEeCCCC----CchHH---HHHHHHcCCCEEEEecC
Confidence 544443 3456678999976665322 22333 4455665 798887763
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=90.63 E-value=5.2 Score=38.92 Aligned_cols=84 Identities=11% Similarity=-0.062 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE--cCCCCC-----CCCHHHHHHHHHH
Q 018253 107 LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH--INPYYG-----KTSLEGLISHFDS 178 (359)
Q Consensus 107 ~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v--~pP~y~-----~~s~~~l~~yf~~ 178 (359)
....++..+.++...+.. .++|||+.+.+.+.++-.+.++..++.| ||++-+ .-|... ..+.+.+.+..+.
T Consensus 73 n~g~~~~~~~i~~~~~~~-~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~ 151 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKG-PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEE 151 (310)
T ss_pred CcCHHHHHHHHHHHHhhc-CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHH
Confidence 444566666655443322 2479999988889999999999999998 998864 334321 1245667777777
Q ss_pred HHhc--CCeEEEeCC
Q 018253 179 VLSM--GPTIIYNVP 191 (359)
Q Consensus 179 Ia~a--~PiiiYn~P 191 (359)
|.+. .|+++==.|
T Consensus 152 v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 152 VFTYFTKPLGVKLPP 166 (310)
T ss_pred HHHhcCCccEEecCC
Confidence 7665 587764434
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=90.61 E-value=5.4 Score=39.53 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccC----------------ccCcCCCCHHHHHHHHHHHHHhh----C--
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGT----------------TGEGQLMSWDEHIMLIGHTVNCF----G-- 125 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~Gs----------------tGE~~~LT~~Er~~li~~~v~~~----~-- 125 (359)
.++.+.++++++. ..++|.|||-+.+. |.|+-- |.+-|.+++..+++.+ +
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGG-SLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCC-cHHHHHHHHHHHHHHHHHHhccc
Confidence 3566666666654 44699999988763 333222 4567777666665544 3
Q ss_pred --CCcEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 126 --ASVKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 126 --grvpViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+.+|-+=++ +.+.+|++++++.+++.|+|.+-+....|
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 3444443222 34679999999999999999999887644
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.64 Score=45.82 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC------------CCC-HHHH---HHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------LMS-WDEH---IMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~------------~LT-~~Er---~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+..+++.+.+.|++||.+.-|+-... -|| ...+ .+.+..+.+..++++|+|+-=|=.+.
T Consensus 221 ~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~ 300 (335)
T TIGR01036 221 LTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSA 300 (335)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 3445788888888999999999877664211 122 1222 24555555566778998854344467
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++++++.. +|||+|.+..-.+.
T Consensus 301 ~da~e~l~----aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 301 QDALEKIR----AGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHH----cCCcHHHhhHHHHH
Confidence 77877766 79999998876554
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=90.43 E-value=7.7 Score=37.25 Aligned_cols=77 Identities=12% Similarity=-0.034 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC--CCEEEE--cCCCCCC------CCHHHHHHHHHH
Q 018253 109 SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG--MHAALH--INPYYGK------TSLEGLISHFDS 178 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G--adav~v--~pP~y~~------~s~~~l~~yf~~ 178 (359)
..++..+.++...+. -..|+++++.+.+.++..+.++..++++ +|++-+ .-|.... .+.+.+.+.+++
T Consensus 74 g~~~~~~~~~~~~~~--~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~ 151 (300)
T TIGR01037 74 GVEAFLEELKPVREE--FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKA 151 (300)
T ss_pred CHHHHHHHHHHHhcc--CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 455555555443322 2469999998889999999999999874 898876 3344321 345566666666
Q ss_pred HHhc--CCeEE
Q 018253 179 VLSM--GPTII 187 (359)
Q Consensus 179 Ia~a--~Piii 187 (359)
+.++ .||.+
T Consensus 152 vr~~~~~pv~v 162 (300)
T TIGR01037 152 VKDKTDVPVFA 162 (300)
T ss_pred HHHhcCCCEEE
Confidence 6554 35443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.40 E-value=4.3 Score=39.82 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEE----------EccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CCCCH-H
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMI----------VGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GSNST-R 140 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~----------v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g~~st-~ 140 (359)
+.-|.+.+.+-.....+.|+++|= ..+..|.....+.+--.++++++++.++ ++||-+=+ |-... .
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~ 152 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDI 152 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcccc
Confidence 345778899999999899988764 4577899999999999999999999887 78876633 22222 3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCC----CCCCCCHHHHHHHHHHHHhcCC-e-EEEeCCCCCCCCCCHHHHHHHhcCC
Q 018253 141 EAIHATEQGFAVGMHAALHINP----YYGKTSLEGLISHFDSVLSMGP-T-IIYNVPSRTGQDIPPRVIHTMAQSP 210 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP----~y~~~s~~~l~~yf~~Ia~a~P-i-iiYn~P~~tg~~ls~e~l~~La~~p 210 (359)
.+.+.++.+++.|++++.|-.= .|..+ .-.++..+|.+..| + ++-| |--.+++...+..+.-
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~~~~~ipvi~N-----GdI~s~~~a~~~l~~t 220 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKEAVPSIPVIAN-----GDIKSLEDAKEMLEYT 220 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHHhCCCCeEEeC-----CCcCCHHHHHHHHHhh
Confidence 5889999999999999988754 23222 33555566666544 3 3333 3345677777765543
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.39 E-value=2 Score=42.91 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=62.5
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+++.|++||.+.+..|-...=... -.+.+..+++.++ +|||+-=|=.+-.+.+ .|..+|||+|++--|+.
T Consensus 250 a~~a~~~G~d~I~VSnhGGrqld~~~~-~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~----KALaLGA~aV~iGr~~l 322 (361)
T cd04736 250 AKRCIELGADGVILSNHGGRQLDDAIA-PIEALAEIVAATY--KPVLIDSGIRRGSDIV----KALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHCCcCEEEECCCCcCCCcCCcc-HHHHHHHHHHHhC--CeEEEeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 445678999999999888854321111 2444445555553 8999854433444444 56679999999999987
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.++++.+.+.
T Consensus 323 ~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 323 YGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 53 5789999998888764
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=90.39 E-value=14 Score=35.11 Aligned_cols=178 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc----Cc------------CCCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG----EG------------QLMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG----E~------------~~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|--|.+.+.+.++.|.+.|+|-+=++=-.+ ++ .-+|.++-.++++...+. ..++|++.
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~-~~~~pivl 92 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK-EPDIPIVL 92 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-CTSSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc-CCCCCEEE
Confidence 34446778999999999999999999665432222 22 235666667777776632 35789988
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ- 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~- 208 (359)
=...+..-. .=++.+.++++|+|++++.-=. .|+-..|.....+. +.++..=.| .-+.+-++++++
T Consensus 93 m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-----~ee~~~~~~~~~~~gl~~I~lv~p-----~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 93 MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-----PEESEELREAAKKHGLDLIPLVAP-----TTPEERIKKIAKQ 162 (259)
T ss_dssp EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-----GGGHHHHHHHHHHTT-EEEEEEET-----TS-HHHHHHHHHH
T ss_pred EeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-----hHHHHHHHHHHHHcCCeEEEEECC-----CCCHHHHHHHHHh
Confidence 777655433 3458999999999999985311 24445555544444 555555445 356788999884
Q ss_pred CCCeEEEec---cCch-----h-------hHhhhhCCceEEEecCCch--hhhhhhhcCCceeecccc
Q 018253 209 SPNLAGVKE---CVGN-----D-------RVEHYTGNGIVVWSGNDDQ--CHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 ~pnivGiK~---ss~d-----~-------~l~~~~~~~~~v~~G~d~~--~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+=- .+|. . ++++++ +.-++.|..-. -....+..|+||+|-|++
T Consensus 163 a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 163 ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLAAGADGVIVGSA 228 (259)
T ss_dssp -SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHHTTSSEEEESHH
T ss_pred CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHHccCCEEEECHH
Confidence 566666531 1111 1 233333 55677766421 111235689999998854
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.6 Score=40.19 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
...|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ ++++=++. +++..-++..+-.|.++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~-~~~l~~H~-Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 146 YKANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLP-GVPLGIHA-HNDSGLAVANSLAAVEAG 220 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCC-CCeeEEEe-cCCCCcHHHHHHHHHHcC
Confidence 368999999999999999999999999999 7899999999999988774 46765544 678888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 154 MHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 154 adav~v~pP~y~----~~s~~~l~~yf 176 (359)
++.+=..---+. ..+-+++..++
T Consensus 221 a~~id~s~~GlGeraGn~~~e~~~~~L 247 (273)
T cd07941 221 ATQVQGTINGYGERCGNANLCSIIPNL 247 (273)
T ss_pred CCEEEEeccccccccccccHHHHHHHH
Confidence 998865544332 23445555555
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.2 Score=40.54 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=55.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEe-------c-CCCC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN-------T-GSNS 138 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViag-------v-g~~s 138 (359)
|+|.+++.= +.+...++..++.|++.+-+.--.|. +..++..+.++.+++.+. ..+|+++- + ...+
T Consensus 84 ~~~~~~~~~--~~~~~~ve~A~~~Gad~v~~~~~~g~---~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 84 TSLSPDPND--KVLVGTVEEAIKLGADAVSVHVNVGS---ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred CCCCCCCCc--ceeeecHHHHHHcCCCEEEEEEecCC---hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 677555432 55666788899999998777655442 235666666666666542 45787764 2 2234
Q ss_pred HHHHHHHHHHHHhCCCCEE
Q 018253 139 TREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav 157 (359)
.++..+.++.+.++|||.+
T Consensus 159 ~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 159 PEVVAHAARVAAELGADIV 177 (267)
T ss_pred HHHHHHHHHHHHHHCCCEE
Confidence 4555566788888999988
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.96 Score=45.24 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
...++++.++++|++-|.+-|+|- +.+.-+......+.+... .. ++|||+|-. .+.+ .++++.++|||+|+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik-~~--~ipVIaG~V-~t~e----~A~~l~~aGAD~V~ 213 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIY-EL--DVPVIVGGC-VTYT----TALHLMRTGAAGVL 213 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHH-HC--CCCEEEeCC-CCHH----HHHHHHHcCCCEEE
Confidence 356788888999999999988763 222222112233443333 23 589998442 2334 44555569999998
Q ss_pred Ec
Q 018253 159 HI 160 (359)
Q Consensus 159 v~ 160 (359)
+-
T Consensus 214 VG 215 (368)
T PRK08649 214 VG 215 (368)
T ss_pred EC
Confidence 85
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.11 E-value=6.4 Score=37.63 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEecC---------CCCHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG---------SNSTREAIHATE 147 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagvg---------~~st~~ai~la~ 147 (359)
+-++..++.|++.+-+.-+++|. ...|.+|-.+.+..+++.+.. ...|.+++. ..+.+..+++++
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 34667778888888888777773 334444544444444443321 122322111 224566666666
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++|+|.+-+.- .....+++++.+.++.+.+.
T Consensus 157 ~~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 157 RLLDLGCDEISLGD-TIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHcCCCEEEECC-CCCccCHHHHHHHHHHHHHH
Confidence 66666666544432 33344566666666666554
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=90.09 E-value=3.4 Score=39.43 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=84.2
Q ss_pred cCCceEEe--eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 58 KALRLITA--IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 58 ~~~Gi~~a--l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
|-.|..+. +.+. ..+..|.+-+.+.++.+.+.|++.|.+.=|.|- +++++-.++++.+.+.++ +|+=++.
T Consensus 128 k~~G~~v~~~i~~~--~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~--~~l~~H~- 199 (275)
T cd07937 128 KKAGKHVEGAICYT--GSPVHTLEYYVKLAKELEDMGADSICIKDMAGL---LTPYAAYELVKALKKEVG--LPIHLHT- 199 (275)
T ss_pred HHCCCeEEEEEEec--CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhCC--CeEEEEe-
Confidence 45564332 3333 347799999999999999999999999999996 678999999988888764 6665554
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
+++..-++..+..|.++|++.+=..---+. ..+-|++..+.+
T Consensus 200 Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 200 HDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 678888999999999999999876654443 234466666554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.9 Score=42.83 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=57.9
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHH--H-----------------HHHHHHHHHhhCCCcEEEEecCCCCHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--H-----------------IMLIGHTVNCFGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E--r-----------------~~li~~~v~~~~grvpViagvg~~st~~a 142 (359)
...+..+.+.|+++|.+.|..|=.+ ..-| | ...+..+.+.. .++|||+.=|=.+..++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~--~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv 276 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSW--AAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDI 276 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCc--cchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHH
Confidence 4666778889999999988654110 0000 0 11222223322 46898874444445554
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+. ..+|||++.+..|++.. ...+++.++++.+.+.
T Consensus 277 ~k~----l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~e 315 (352)
T PRK05437 277 AKA----LALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEE 315 (352)
T ss_pred HHH----HHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 443 34799999999998754 2467788888888765
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.9 Score=39.65 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=55.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++...+.++.... ...++++.+.+.. ++||+++=|-.+.++..++ .+.|||++++-.
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~----~~~Gadgv~ig~ 219 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG--PNFELTKELVKAV--NVPVIASGGVSSIDDLIAL----KKLGVYGVIVGK 219 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC--CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHH----HHCCCCEEEEeH
Confidence 4577777899999999988887776543 2366666766653 5899998877777776553 348999999975
Q ss_pred CCC
Q 018253 162 PYY 164 (359)
Q Consensus 162 P~y 164 (359)
-.|
T Consensus 220 a~~ 222 (230)
T TIGR00007 220 ALY 222 (230)
T ss_pred HHH
Confidence 544
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.3 Score=40.49 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------ 135 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg------ 135 (359)
+...-.||..-+ |.+..-+.+.++++ .|++++=+=|+ .|....++...+ ..+||+.++|
T Consensus 78 ~vv~DmPf~sy~--~~e~a~~na~rl~~eaGa~aVkiEgg---------~~~~~~i~~l~~---~gIpV~gHiGltPq~a 143 (263)
T TIGR00222 78 LIVTDLPFMSYA--TPEQALKNAARVMQETGANAVKLEGG---------EWLVETVQMLTE---RGVPVVGHLGLTPQSV 143 (263)
T ss_pred eEEeCCCcCCCC--CHHHHHHHHHHHHHHhCCeEEEEcCc---------HhHHHHHHHHHH---CCCCEEEecCCCceeE
Confidence 334557887544 35555555556666 99999999885 444455544443 4688883322
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 136 ------------SNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 136 ------------~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+.+++++.++..+++||+++++-
T Consensus 144 ~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 144 NILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE 180 (263)
T ss_pred eecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 1125578888999999999988774
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=4.9 Score=41.83 Aligned_cols=99 Identities=9% Similarity=0.128 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.-|.+-+.++++.+.+.|++.|.+.-|+|= |++++-.++++.+.+.++.++||=+++ +++.--++.-+-.|.++||
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl---l~P~~~~~LV~~Lk~~~~~~ipI~~H~-Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDMAAL---LKPQPAYDIVKGIKEACGEDTRINLHC-HSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCccC---CCHHHHHHHHHHHHHhCCCCCeEEEEe-CCCCCcHHHHHHHHHHcCC
Confidence 458999999999999999999999999994 899999999999998876578887766 4567778888889999999
Q ss_pred CEEEE-cCCCCCCC---CHHHHHHHHH
Q 018253 155 HAALH-INPYYGKT---SLEGLISHFD 177 (359)
Q Consensus 155 dav~v-~pP~y~~~---s~~~l~~yf~ 177 (359)
|.+=. +.+.-..+ +-++++..++
T Consensus 227 d~vDtai~Glg~~aGn~atE~vv~~L~ 253 (499)
T PRK12330 227 DVVDTAISSMSLGPGHNPTESLVEMLE 253 (499)
T ss_pred CEEEeecccccccccchhHHHHHHHHH
Confidence 98844 33433333 3355555444
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.79 Score=44.62 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
.+.+..+++.+.+.|++.|.|=|-|.+-.+-... .-+.+..+++.++ +|||++=+-.|.+++.+..+. .|+|+|
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a-~w~~i~~i~~~~~--ipvi~NGdI~s~~d~~~~~~~---tg~dgv 210 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKGPA-DWEAIAEIKEALP--IPVIANGDIFSPEDAERMLEQ---TGADGV 210 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHHHCHHC-T--SEEEEESS--SHHHHHHHCCC---H-SSEE
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCccc-chHHHHHHhhccc--ceeEEcCccCCHHHHHHHHHh---cCCcEE
Confidence 5678889999999999999999988877776633 3444456667665 999998777788888776553 499999
Q ss_pred EEcCCCCCCC
Q 018253 158 LHINPYYGKT 167 (359)
Q Consensus 158 ~v~pP~y~~~ 167 (359)
|+.--.+..|
T Consensus 211 MigRgal~nP 220 (309)
T PF01207_consen 211 MIGRGALGNP 220 (309)
T ss_dssp EESHHHCC-C
T ss_pred EEchhhhhcC
Confidence 9975544444
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=89.92 E-value=3.5 Score=40.70 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecCCC-CHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSN-STREAIHAT 146 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg~~-st~~ai~la 146 (359)
+=..+.+.+.++.+ ..++++|-++=+. |....-..+.-.++++.+++.++. ++||++=++.. +.++..+.+
T Consensus 153 ~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia 231 (344)
T PRK05286 153 EDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIA 231 (344)
T ss_pred ccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHH
Confidence 34567788888876 4479998886432 333333455566788888887753 58999988744 345799999
Q ss_pred HHHHhCCCCEEEEcCCCC
Q 018253 147 EQGFAVGMHAALHINPYY 164 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y 164 (359)
+.+++.|+|++.+.....
T Consensus 232 ~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 232 DLALEHGIDGVIATNTTL 249 (344)
T ss_pred HHHHHhCCcEEEEeCCcc
Confidence 999999999999998664
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=5.7 Score=39.20 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCcc----CcCCC-----------CHHHHHHHHHHHHHhhCCC--cEE
Q 018253 75 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----EGQLM-----------SWDEHIMLIGHTVNCFGAS--VKV 130 (359)
Q Consensus 75 ~ID~~~l~~li~-------~li~~Gv~Gl~v~GstG----E~~~L-----------T~~Er~~li~~~v~~~~gr--vpV 130 (359)
.+..+.++++++ +..++|.|||=+.+..| +|.+= |.+-|.+++..+++.+... .||
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 356666666655 45569999998887643 22111 5677888777777765443 355
Q ss_pred EEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 131 IGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 131 iagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+=++ +.+.+|++++++..++.|+|.+-+....|
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~ 251 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAV 251 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 54333 35789999999999999999998876544
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.8 Score=42.03 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+.+- +- +.++.|.+-+.++++...+.|++.|.++-|+| .+++++-.++++.+.+.. .+|+=++. +++
T Consensus 127 ~~G~~v~~~-~e-d~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~--~~~l~~H~-Hnd 198 (378)
T PRK11858 127 DHGLYVSFS-AE-DASRTDLDFLIEFAKAAEEAGADRVRFCDTVG---ILDPFTMYELVKELVEAV--DIPIEVHC-HND 198 (378)
T ss_pred HCCCeEEEE-ec-cCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhc--CCeEEEEe-cCC
Confidence 456554443 22 35679999999999999999999999999998 789999999999998876 46765554 678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
..-++..+-.|.++||+.+-..---.. ..+-++++.+.+
T Consensus 199 ~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 199 FGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHH
Confidence 888999999999999998866544332 244566665554
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=89.82 E-value=12 Score=34.31 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
..+..+...++++.|.+.|++-|=+. ++..+.+++..+-+ +.+.... .++.+ ......++.-...+.+.+.|
T Consensus 9 ~~~~~~~k~~i~~~L~~~Gv~~iEvg-----~~~~~~~~~~~v~~-~~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEAGVDYIEVG-----FPFASEDDFEQVRR-LREALPN-ARLQA-LCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp TT--HHHHHHHHHHHHHHTTSEEEEE-----HCTSSHHHHHHHHH-HHHHHHS-SEEEE-EEESCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHhCCCEEEEc-----ccccCHHHHHHhhh-hhhhhcc-cccce-eeeehHHHHHHHHHhhHhcc
Confidence 34778889999999999999998766 66677777766654 4444333 33332 33334444333366778899
Q ss_pred CCEEEEcCCCCC-------CCCHHHHHHHHHHHHh----cCCeEEEeCCCCCCCCCCHHHHHHHh----c-CCCeEEEec
Q 018253 154 MHAALHINPYYG-------KTSLEGLISHFDSVLS----MGPTIIYNVPSRTGQDIPPRVIHTMA----Q-SPNLAGVKE 217 (359)
Q Consensus 154 adav~v~pP~y~-------~~s~~~l~~yf~~Ia~----a~PiiiYn~P~~tg~~ls~e~l~~La----~-~pnivGiK~ 217 (359)
+|.+-+..|.-- ..+.++..+-..++.+ ...-+-++.+..+. .+++.+.+++ + -+..+.++|
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASR--TDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG--SSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc--ccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 999887655421 2233454544444443 24555666665543 4566555554 3 478899999
Q ss_pred cCch
Q 018253 218 CVGN 221 (359)
Q Consensus 218 ss~d 221 (359)
+.|-
T Consensus 159 t~G~ 162 (237)
T PF00682_consen 159 TVGI 162 (237)
T ss_dssp TTS-
T ss_pred ccCC
Confidence 9986
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.3 Score=40.35 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=71.6
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
++.+.+.+.|+|+|++-|....++.-.. --..++..+++.+ ++|||+.=|-.+-++ +..+.++|||+|++-..
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~-~~~~ll~~v~~~~--~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGEL-TTMALVPQVVDAV--SIPVIAAGGIADGRG----MAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCCCCC-cHHHHHHHHHHHh--CCCEEEECCCCCHHH----HHHHHHcCCCEeecchH
Confidence 3456777899999998655333332111 1255666666655 489887433333333 34444589999999987
Q ss_pred CCCCCCHHHHHHHHHHHH-hc--CCeEEEeCC-CCCCCCCCHHHHHHHhc
Q 018253 163 YYGKTSLEGLISHFDSVL-SM--GPTIIYNVP-SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia-~a--~PiiiYn~P-~~tg~~ls~e~l~~La~ 208 (359)
+.... +..+-..|++.. ++ ..+++...+ ++.+..+..++..++.+
T Consensus 193 f~~t~-Es~~~~~~k~~l~~~~~~dt~~t~~~~G~~~R~l~n~~~~~~~~ 241 (307)
T TIGR03151 193 FLCAK-ECNVHPNYKEKVLKAKDRDTVVTGASTGHPVRVLKNKLTRKYQE 241 (307)
T ss_pred Hhccc-ccCCCHHHHHHHHhCCCCCEEEEecCCCCceeeecCHHHHHHHh
Confidence 66432 234556666654 43 467766643 34556788888888754
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.9 Score=41.07 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li-~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
.||- ....+.+..-+.+.+++ +.|++++=+=|++ .++...++..+ ...+||+.++|
T Consensus 103 mPfg-SY~~s~e~av~nA~rl~~eaGa~aVKlEGg~--------~~~~~~I~~l~---~~GIPV~gHiG 159 (332)
T PLN02424 103 LPFG-SYESSTDQAVESAVRMLKEGGMDAVKLEGGS--------PSRVTAAKAIV---EAGIAVMGHVG 159 (332)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHHhCCcEEEECCCc--------HHHHHHHHHHH---HcCCCEEEeec
Confidence 3553 22334444445555553 4777777766654 34444444443 33567765554
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=89.76 E-value=3.9 Score=37.73 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+...+.++.+++.|.+. .+..+.....+.+.+.++++.+.+.
T Consensus 107 ~~~~~~~v~~ak~~g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV-AFGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE-EEEETTTGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCce-EeCccccccccHHHHHHHHHHHHHc
Confidence 334444455555555543 3333444445555555555555554
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=6.2 Score=37.44 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~Ga 154 (359)
|.+.+....+...+.|+|-+=.. .+| -.++++.+++. .++||++ |+...+.++++++++.+.++||
T Consensus 158 ~~~~i~~a~~~a~e~GAD~vKt~-~~~---------~~~~l~~~~~~--~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA 225 (267)
T PRK07226 158 DPEVVAHAARVAAELGADIVKTN-YTG---------DPESFREVVEG--CPVPVVIAGGPKTDTDREFLEMVRDAMEAGA 225 (267)
T ss_pred cHHHHHHHHHHHHHHCCCEEeeC-CCC---------CHHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 44445555565666777766332 111 12445555443 2567654 5655578999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+++.+..-.+...++++..+-++.+..
T Consensus 226 ~Gis~gr~i~~~~~p~~~~~~l~~~v~ 252 (267)
T PRK07226 226 AGVAVGRNVFQHEDPEAITRAISAVVH 252 (267)
T ss_pred cEEehhhhhhcCCCHHHHHHHHHHHHh
Confidence 999999888888888888877777764
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=18 Score=33.76 Aligned_cols=180 Identities=18% Similarity=0.186 Sum_probs=102.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH----HHH-------HHHHHHHHhhCCCcEEEEecCC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD----EHI-------MLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~----Er~-------~li~~~v~~~~grvpViagvg~ 136 (359)
-||---|.-|.+.+.+.++.+.+. ++.+=++=..+.-..=... -.+ ++++.+.+. -++|++.-+--
T Consensus 7 i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~--~~~Pl~lM~y~ 83 (244)
T PRK13125 7 VVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD--VSVPIILMTYL 83 (244)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc--CCCCEEEEEec
Confidence 344456888999999999988777 9987766555443221111 111 344444433 25787543322
Q ss_pred CC-HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHh-cCCCe
Q 018253 137 NS-TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMA-QSPNL 212 (359)
Q Consensus 137 ~s-t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La-~~pni 212 (359)
+. ..+-.++++.++++|+|++.+..=.+ .+.+++.++++.+.+. + +++.-| |. -+.+.++.++ ..+.+
T Consensus 84 n~~~~~~~~~i~~~~~~Gadgvii~dlp~--e~~~~~~~~~~~~~~~Gl~~~~~v~-p~-----T~~e~l~~~~~~~~~~ 155 (244)
T PRK13125 84 EDYVDSLDNFLNMARDVGADGVLFPDLLI--DYPDDLEKYVEIIKNKGLKPVFFTS-PK-----FPDLLIHRLSKLSPLF 155 (244)
T ss_pred chhhhCHHHHHHHHHHcCCCEEEECCCCC--CcHHHHHHHHHHHHHcCCCEEEEEC-CC-----CCHHHHHHHHHhCCCE
Confidence 22 34556678889999999999852111 1235677777777765 4 455444 42 3567888877 47777
Q ss_pred E--EEeccCch-------h---hHhhhhCCceEEEecC---CchhhhhhhhcCCceeecccc
Q 018253 213 A--GVKECVGN-------D---RVEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 213 v--GiK~ss~d-------~---~l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~a 259 (359)
+ ++.-..+. . +++++.. +..+..|. ...-.......|+||++.|++
T Consensus 156 l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 156 IYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 6 33322221 1 2233332 22234332 212233335799999999865
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=89.46 E-value=3.2 Score=41.33 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=84.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+. +++- +.++.|.+-+.++++...+.|++.|.+.-|+| .+++++-.++++.+.+.. .+|+=++. +++
T Consensus 124 ~~g~~v~-~~~e-d~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~--~v~l~~H~-HNd 195 (365)
T TIGR02660 124 DRGLFVS-VGGE-DASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAV--DLPLEMHA-HND 195 (365)
T ss_pred hCCCEEE-Eeec-CCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhc--CCeEEEEe-cCC
Confidence 4565544 3333 35679999999999999999999999999999 889999999999988876 36765544 678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf 176 (359)
..-++..+-.|.++||+.+-..---.. ..+-++++.+.
T Consensus 196 ~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 196 LGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred CChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 889999999999999998866543332 24556666655
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.8 Score=42.10 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++++.+.+.|++.|.+-|-+.... .+..-..+.++.+.+.+ ++|||+.=+-.+.+++.+..+ ..|+|+||+.
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~---~~gad~Vmig 222 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQG-YSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLE---TTGCDGVMIG 222 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEccccccc-CCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHH---hhCCCEEEEC
Confidence 55678888899999999977554322 22222345666666655 389887555556666655553 3699999999
Q ss_pred CCCCCCCC
Q 018253 161 NPYYGKTS 168 (359)
Q Consensus 161 pP~y~~~s 168 (359)
-+.+..|.
T Consensus 223 R~~l~~P~ 230 (319)
T TIGR00737 223 RGALGNPW 230 (319)
T ss_pred hhhhhCCh
Confidence 88886664
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=89.45 E-value=16 Score=34.36 Aligned_cols=137 Identities=7% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEe------cCCCC-------HHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIV-GGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGN------TGSNS-------TREA 142 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v-~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViag------vg~~s-------t~~a 142 (359)
..+.+.++...+.|.+++=+ .+...++. ..|.++..++.+.+.+. +.+.+.+. ..+.+ .+..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~ 87 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG--PSICLSVHAPYLINLASPDKEKREKSIERL 87 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc--CCCcEEEEcCceeccCCCCHHHHHHHHHHH
Confidence 56788889999999999743 23333333 23667766666665554 22233332 22222 3345
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCC-H---HHHHHHHHHHHhc-----CCeEEEeCCCCC-CCCCCHHHHHHHh-c---
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTS-L---EGLISHFDSVLSM-----GPTIIYNVPSRT-GQDIPPRVIHTMA-Q--- 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s-~---~~l~~yf~~Ia~a-----~PiiiYn~P~~t-g~~ls~e~l~~La-~--- 208 (359)
.+.++.|+++|++.+.+.+..+...+ + +.+.+-++.+++. +.+.+=|.+... ...-+++.+.+|. +
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~ 167 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKE 167 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 77788889999998877666553222 2 3455667777653 356666665432 1335567777776 3
Q ss_pred CCCeEEEec
Q 018253 209 SPNLAGVKE 217 (359)
Q Consensus 209 ~pnivGiK~ 217 (359)
.|++.-+=|
T Consensus 168 ~~~~g~~lD 176 (279)
T cd00019 168 KPRVGVCID 176 (279)
T ss_pred CCCeEEEEE
Confidence 456543333
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.8 Score=42.37 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHH-------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E-------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
+++.+..+++.+.+.|++.|.+=|-|.+..-++..+ .-+.+..+.+.+. ++|||++=+=.+.+++.+..
T Consensus 139 ~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l--- 214 (318)
T TIGR00742 139 SYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHL--- 214 (318)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHH---
Confidence 356677889999999999999999885333343322 2233444455442 69998754444666666644
Q ss_pred HhCCCCEEEEcCCCCCCCC
Q 018253 150 FAVGMHAALHINPYYGKTS 168 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s 168 (359)
+ |+|+||+.-..+..|.
T Consensus 215 -~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 215 -S-HVDGVMVGREAYENPY 231 (318)
T ss_pred -h-CCCEEEECHHHHhCCH
Confidence 2 8999999988777653
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=89.41 E-value=12 Score=34.50 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV--iagv--g~~st~~ai~la~~a 149 (359)
....+.++++++.-.+.|+.++.+... +. +.+.+..++ +++| ++|. |...++.-+..+++|
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~-----------~v---~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~A 79 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPS-----------YV---PLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEA 79 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHH-----------HH---HHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHH
Confidence 356788999999999999999987532 23 333333332 3444 4443 667788888999999
Q ss_pred HhCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 150 FAVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 150 ~~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a---~Pii-iYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
.+.|||.+-++.++- . ....+.+.+-.++|.++ .|+. |+. ++. ++.+.+.+.++ .-..-.+|-|+|
T Consensus 80 v~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 80 IKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred HHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 999999998887753 2 34667788888888875 4653 443 444 77676666553 356777898755
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=4.1 Score=38.18 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCEEEEcc----CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGG----TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~G----stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
....++.+.+.|++.+++.+ +|.+++. .++++.+.+.+ .+|||++=|-.+.++..++.+. .|+|+
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d------~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~---~G~~g 223 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGTKNGYD------LELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE---GGADA 223 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC------HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh---CCccE
Confidence 35556677789999998844 3455552 45666666655 5899997777778887765433 79999
Q ss_pred EEEcCCCCC-CCCHHHHHHHHHH
Q 018253 157 ALHINPYYG-KTSLEGLISHFDS 178 (359)
Q Consensus 157 v~v~pP~y~-~~s~~~l~~yf~~ 178 (359)
+++..=.|. ..+.+++.++.++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHH
Confidence 999877664 5677887777653
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.27 E-value=7.4 Score=38.55 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=82.4
Q ss_pred CCceEEeeec-CC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc--CcCCCCHHHHHHHHHHHHH-hhCCCcEEEE
Q 018253 59 ALRLITAIKT-PY--LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG--EGQLMSWDEHIMLIGHTVN-CFGASVKVIG 132 (359)
Q Consensus 59 ~~Gi~~al~T-PF--~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG--E~~~LT~~Er~~li~~~v~-~~~grvpVia 132 (359)
-.|+|..+-. =+ +..|+++......-+++.++.|++++-++---| +...+ .+++.+.++.+.+ +-.-.+|+++
T Consensus 83 ~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~-~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 83 NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAI-NDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHH-HHHHHHHHHHHHHHHHHcCCceEE
Confidence 4677777521 11 112345555566667888999999876665544 11112 2445544555554 4556799887
Q ss_pred ec--CC-------------CCHHHHHHHHHHHHh--CCCCEEEEcCCCCC-----------CCCHHHHHHHHHHHHhc--
Q 018253 133 NT--GS-------------NSTREAIHATEQGFA--VGMHAALHINPYYG-----------KTSLEGLISHFDSVLSM-- 182 (359)
Q Consensus 133 gv--g~-------------~st~~ai~la~~a~~--~Gadav~v~pP~y~-----------~~s~~~l~~yf~~Ia~a-- 182 (359)
-+ .. ...+-.++.+|.+.+ +|||-+=+-.|.-. -.++++..++|+++.++
T Consensus 162 E~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~ 241 (340)
T PRK12858 162 EPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD 241 (340)
T ss_pred EEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC
Confidence 41 11 245678888888885 99998888777432 13788899999999987
Q ss_pred CCeEEE
Q 018253 183 GPTIIY 188 (359)
Q Consensus 183 ~PiiiY 188 (359)
.|+++-
T Consensus 242 ~P~vvl 247 (340)
T PRK12858 242 LPFIFL 247 (340)
T ss_pred CCEEEE
Confidence 687775
|
|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=89.24 E-value=18 Score=35.66 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc-------CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM-------GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf----~~Ia~a-------~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
|+..+++++...++||+.+.+.-|.-.-.|+++..+|. ++|.+. .|++++. .|.. ..+..++
T Consensus 178 t~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~----cG~~---~~~~~~~ 250 (345)
T PLN02433 178 TDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYA----NGSG---GLLERLA 250 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe----CCCH---HHHHHHH
Confidence 44567777877889999998888865556776665444 566553 2556654 3432 5677777
Q ss_pred cCC-CeEEEeccCchh-hHhhhhCCceEE
Q 018253 208 QSP-NLAGVKECVGND-RVEHYTGNGIVV 234 (359)
Q Consensus 208 ~~p-nivGiK~ss~d~-~l~~~~~~~~~v 234 (359)
+.+ +++++=.. .|. ..++..+++..+
T Consensus 251 ~~~~~~i~~d~~-~dl~e~~~~~g~~~~l 278 (345)
T PLN02433 251 GTGVDVIGLDWT-VDMADARRRLGSDVAV 278 (345)
T ss_pred hcCCCEEEcCCC-CCHHHHHHHhCCCeEE
Confidence 654 67665332 342 334444444433
|
|
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=89.24 E-value=20 Score=33.93 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cCccCc------CCCCHHHHHHHHHHHHHhhCCCcEEEE------ecCCCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG-GTTGEG------QLMSWDEHIMLIGHTVNCFGASVKVIG------NTGSNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~-GstGE~------~~LT~~Er~~li~~~v~~~~grvpVia------gvg~~st~~a 142 (359)
.+...++..+..+.+.|++.+++. |-.-.. ..-....=.+|++.+.+...+...+-+ +..+.+.+.-
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~ 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHH
Confidence 466999999999999999999888 422111 112333345556555543222221111 1123346666
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCC-----------CCCCCCCHHHHHHHh
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPS-----------RTGQDIPPRVIHTMA 207 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~-----------~tg~~ls~e~l~~La 207 (359)
++..+.=.++||+.++.. |.| +.+.+.+|.+.+.+. .||+.==.|- ..|+.+|.+++++|.
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ-~~f---d~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~~~~~l~ 224 (274)
T cd00537 150 IKRLKRKVDAGADFIITQ-LFF---DNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDWLLERLE 224 (274)
T ss_pred HHHHHHHHHCCCCEEeec-ccc---cHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 666666677899865554 666 567888888888765 4765433332 225666666666654
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=89.19 E-value=12 Score=36.27 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CHHHHH----HHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEGLI----SHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~--s~~~l~----~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
++-.++.++...++|||++.+..|.-... |+++.. -|++.|.+. .|+++|.. |. +...+..+.+.
T Consensus 170 t~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c----G~--~~~~l~~~~~~ 243 (326)
T cd03307 170 TEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC----GN--TTPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC----CC--ChhHHHHHHHc
Confidence 55567888888889999998888865443 666655 455677765 37776643 22 23356666653
Q ss_pred C-CeEEEeccCchh-hHhhhhCCceEEEecCC
Q 018253 210 P-NLAGVKECVGND-RVEHYTGNGIVVWSGND 239 (359)
Q Consensus 210 p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~d 239 (359)
+ ++.++-. ..|. ..++..+++..++.|.|
T Consensus 244 g~d~~~~d~-~~dl~e~~~~~g~~~~i~Gnid 274 (326)
T cd03307 244 GFDGISVDE-KVDVKTAKEIVGGRAALIGNVS 274 (326)
T ss_pred CCCeecccc-cCCHHHHHHHcCCceEEEeCCC
Confidence 2 4443322 2232 33344455555554443
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.5 Score=41.34 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+....+++.+.+.|++.|.+-|-|.+...--.. ..++++.+.+.+ ++|||+.=+-.+.+++.+..+ ..|+|+||
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a-~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~---~~gadgVm 222 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEA-EYDSIRAVKQKV--SIPVIANGDITDPLKARAVLD---YTGADALM 222 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCc-ChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHh---ccCCCEEE
Confidence 346677777889999999998877543321111 235666666655 589887544446666665553 37999999
Q ss_pred EcCCCCCCCC
Q 018253 159 HINPYYGKTS 168 (359)
Q Consensus 159 v~pP~y~~~s 168 (359)
+.-..+..|.
T Consensus 223 iGR~~l~nP~ 232 (321)
T PRK10415 223 IGRAAQGRPW 232 (321)
T ss_pred EChHhhcCCh
Confidence 9977776553
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.6 Score=40.91 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=58.0
Q ss_pred HHHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
-+.++|.+.|+..+..+|+ .|-+.-+...+-.+ ..++.. ++|||+..|=.+..++ .+|.++|+|+|++-.
T Consensus 135 v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~---~i~~~~--~vPvIvDAGiG~pSda----a~AMElG~daVLvNT 205 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLR---IIIERA--DVPVIVDAGIGTPSDA----AQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHH---HHHHHG--SSSBEEES---SHHHH----HHHHHTT-SEEEESH
T ss_pred HHHHHHHHCCCCEEEecccccccCcCCCCHHHHH---HHHHhc--CCcEEEeCCCCCHHHH----HHHHHcCCceeehhh
Confidence 3567888999999999995 56666677665544 445666 7999996655556665 456779999999976
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 018253 162 PYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~Ia~ 181 (359)
-.....++-.+-+-|+.-.+
T Consensus 206 AiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 206 AIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHTSSSHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHH
Confidence 66555666666666654433
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=89.13 E-value=18 Score=33.29 Aligned_cols=113 Identities=17% Similarity=0.055 Sum_probs=78.0
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCCH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNST 139 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~st 139 (359)
++-.+.+.=| +.|.-..+.=...++..++.|++-+=+.-..|-..+=..++-.+-+..+++.+.+. ++||.-++..+-
T Consensus 53 ~v~v~tVigF-P~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~ 131 (211)
T TIGR00126 53 EVRICTVVGF-PLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTD 131 (211)
T ss_pred CCeEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCH
Confidence 3444445555 56777888888888999999999887777777554444555555666666665543 567777787777
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYY-GKTSLEGLIS 174 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~ 174 (359)
++-+..++.+.++|||.+=..+=|. ...+.+++..
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~ 167 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRL 167 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHH
Confidence 8888999999999999776664444 2234444333
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.04 E-value=2.8 Score=40.87 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.++++.++++|++++.+.-+.+....||.++..+++ +.+++.+..+ +++.++.+.. . .+.....+.|+|.
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~~-~---~~l~~~~~~g~d~ 256 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGDL-T---SILEEMADCGFDG 256 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCCc-h---HHHHHHHhcCCCe
Confidence 4556666788999999999998888889999988776 4555666555 5666665443 2 3345555688887
Q ss_pred EEE
Q 018253 157 ALH 159 (359)
Q Consensus 157 v~v 159 (359)
+.+
T Consensus 257 ~~~ 259 (339)
T PRK06252 257 ISI 259 (339)
T ss_pred ecc
Confidence 553
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.3 Score=39.11 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHH------------------------HHHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDL------------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~l------------------------i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
..|++--.+ ++||+||.+.++++ +++|++.|++.|+.-|... +..|=.
T Consensus 87 adGvV~G~L---~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~-----~a~~g~ 158 (248)
T PRK11572 87 FPGLVTGVL---DVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ-----DAEQGL 158 (248)
T ss_pred CCEEEEeeE---CCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC-----CHHHHH
Confidence 445554444 56999999998765 5678899999999776654 477888
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 115 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++..++.+++++ |++|-|= +.+..-++ . +.|+..+-..
T Consensus 159 ~~L~~lv~~a~~~~-Im~GgGV-~~~Nv~~l-~---~tG~~~~H~s 198 (248)
T PRK11572 159 SLIMELIAASDGPI-IMAGAGV-RLSNLHKF-L---DAGVREVHSS 198 (248)
T ss_pred HHHHHHHHhcCCCE-EEeCCCC-CHHHHHHH-H---HcCCCEEeeC
Confidence 88888888887766 8887663 44444444 2 4888877544
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=7.1 Score=40.33 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..+.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ +||=++. +++.--++.-+-.|.++||
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~---l~P~~v~~Lv~~lk~~~~--vpI~~H~-Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAGL---LTPKRAYELVKALKKKFG--VPVEVHS-HCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCC---cCHHHHHHHHHHHHHhcC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 668999999999999999999999999995 799999999999988774 7876655 5677788888889999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-++++..++
T Consensus 223 d~vD~sv~~~g~gagN~atE~lv~~L~ 249 (467)
T PRK14041 223 DMFDTAISPFSMGTSQPPFESMYYAFR 249 (467)
T ss_pred CEEEeeccccCCCCCChhHHHHHHHHH
Confidence 988444 344333 33355554443
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=88.98 E-value=4 Score=38.30 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--e------cCCCCHHHHHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--N------TGSNSTREAIHATEQGF 150 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--g------vg~~st~~ai~la~~a~ 150 (359)
..++++++++-+.|.+.+=+.-.+-+ |+.++|.++++.+.+. ...|+. | -...++.+-|+++++.-
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~---i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L 144 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME---ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTPDDRIKLINKDL 144 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC---CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCHHHHHHHHHHHH
Confidence 57888888999999999877666554 8999999999988763 112221 1 12356788999999999
Q ss_pred hCCCCEEEEcC
Q 018253 151 AVGMHAALHIN 161 (359)
Q Consensus 151 ~~Gadav~v~p 161 (359)
++||+.||+-.
T Consensus 145 eAGA~~ViiEa 155 (237)
T TIGR03849 145 EAGADYVIIEG 155 (237)
T ss_pred HCCCcEEEEee
Confidence 99999999864
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=88.94 E-value=6.2 Score=38.39 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.++++.+++.|++-+.+.+.. .. ++++...+. .++|++.+++ ++.++.++++|+|++.+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~-------p~---~~i~~lk~~---g~~v~~~v~s------~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGN-------PG---KYIPRLKEN---GVKVIPVVAS------VALAKRMEKAGADAVIAE 136 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-------cH---HHHHHHHHc---CCEEEEEcCC------HHHHHHHHHcCCCEEEEE
Confidence 3578888899999988764321 12 255544432 4788887754 456788889999999987
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhc--CCeEE
Q 018253 161 NPYYGKT-SLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 161 pP~y~~~-s~~~l~~yf~~Ia~a--~Piii 187 (359)
...-... ....-.....++.+. .||+.
T Consensus 137 g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 137 GMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6522211 111135566666665 57654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.9 Score=42.42 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHH--------------H---HHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------------I---MLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er--------------~---~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
.+.+..+.+.|+++|.+.|..|-.+.--...| . +.+..+.+ ...++|||+.=|=.+..++.+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAK 271 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHH
Confidence 56777888999999999886653211100000 0 11112222 234689887444334444443
Q ss_pred HHHHHHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~a 182 (359)
. ..+|||+|++.-|++.. .+++.+..|++.+.+.
T Consensus 272 a----LalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~e 308 (333)
T TIGR02151 272 A----IALGADAVGMARPFLKAALDEGEEAVIEEIELIIEE 308 (333)
T ss_pred H----HHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 33799999999997742 4778899999988775
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=88.89 E-value=4.2 Score=41.16 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC---------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGT---------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gs---------tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
|.-+.+.+.+++..+.+.|+++|=+|=+ .|....-..+.-.++++.+.+.+ ++||++=++. +..+..+
T Consensus 108 g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~Pv~vKl~p-~~~~~~~ 184 (420)
T PRK08318 108 VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLPVIVKLTP-NITDIRE 184 (420)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCcEEEEcCC-CcccHHH
Confidence 5556788889998888899999988644 23333455666777787777654 5899998875 4556889
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE-Ee-CCCCCCCCC---CHHHHHHHhcCCCeEEEeccC
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII-YN-VPSRTGQDI---PPRVIHTMAQSPNLAGVKECV 219 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii-Yn-~P~~tg~~l---s~e~l~~La~~pnivGiK~ss 219 (359)
+++.+++.|||++.+++-.+.+..- ++.. ....|.+- .+ .-+.+|..+ +.+.+.++.+.-+.
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~i-d~~~-----~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~------- 251 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGV-DLDR-----MIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPET------- 251 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccc-cccc-----cCCCceecCCCCcccccchhhhHHHHHHHHHHHhcccc-------
Confidence 9999999999999998776643210 0000 01134330 00 112334443 34455555431100
Q ss_pred chhhHhhhhCCceEEEecCCchhhhhhhhcCCceeeccccccc--HHHHHHHH
Q 018253 220 GNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLV--PGMMRELM 270 (359)
Q Consensus 220 ~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~--P~l~~~l~ 270 (359)
.+.-+.. .. .|+++.| ... .+.+|++++..+++.+. |..+.++.
T Consensus 252 ~~ipIig--~G--GI~s~~d--a~e-~i~aGA~~Vqi~ta~~~~gp~ii~~I~ 297 (420)
T PRK08318 252 RGLPISG--IG--GIETWRD--AAE-FILLGAGTVQVCTAAMQYGFRIVEDMI 297 (420)
T ss_pred CCCCEEe--ec--CcCCHHH--HHH-HHHhCCChheeeeeeccCCchhHHHHH
Confidence 0100100 01 1344443 333 46799999999999887 66666554
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.87 E-value=19 Score=35.29 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=90.6
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+++..+.+.|-=|++.. + ++.+|..+.++.+. ++..+.+.++. ..+..++++...+.|+|.+.+-.-
T Consensus 49 ~ma~ava~~GglGvi~~----~---~~~~~~~~~i~~vk----~~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~ 115 (325)
T cd00381 49 EMAIAMARLGGIGVIHR----N---MSIEEQAEEVRKVK----GRLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSA 115 (325)
T ss_pred HHHHHHHHCCCEEEEeC----C---CCHHHHHHHHHHhc----cCceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECC
Confidence 45556667886676532 2 36677766665543 44444444443 467788999999999998877542
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc--C------------chh---
Q 018253 163 YYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC--V------------GND--- 222 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s--s------------~d~--- 222 (359)
.- +.+...+..+.+.+. .||+. |...+++...++.+. .+-+||.. . +.+
T Consensus 116 ~G---~~~~~~~~i~~ik~~~p~v~Vi~-------G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 116 HG---HSVYVIEMIKFIKKKYPNVDVIA-------GNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred CC---CcHHHHHHHHHHHHHCCCceEEE-------CCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 21 224555666666554 35554 556788888888752 22233321 0 001
Q ss_pred ---hHhhhhC-CceEEEe--cCC--chhhhhhhhcCCceeecccccccHHHH
Q 018253 223 ---RVEHYTG-NGIVVWS--GND--DQCHDARWNHGATGVISVTSNLVPGMM 266 (359)
Q Consensus 223 ---~l~~~~~-~~~~v~~--G~d--~~~~~~~l~~Ga~G~is~~an~~P~l~ 266 (359)
.+.+... .++.|+. |-. .... .++.+|++|++.|+.....+.+
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~-kAla~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIV-KALAAGADAVMLGSLLAGTDES 235 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHH-HHHHcCCCEEEecchhcccccC
Confidence 1112221 2455665 332 2233 4588999999988776655443
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=4.1 Score=38.48 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=|-.+.++..++.+ +.|+|++++..
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~--d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~ 227 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGY--DLELLKSFRNAL--KIPLIALGGAGSLDDIVEAIL---NLGADAAAAGS 227 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcc
Confidence 55666677899999999876654443222 344555555553 589999877778888777653 46999999999
Q ss_pred CCCCC
Q 018253 162 PYYGK 166 (359)
Q Consensus 162 P~y~~ 166 (359)
.+|+.
T Consensus 228 a~~~~ 232 (258)
T PRK01033 228 LFVFK 232 (258)
T ss_pred eeeeC
Confidence 98875
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.7 Score=39.19 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=63.5
Q ss_pred HHHHHHhCCCCEEEEcCC----CCC-----CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH----HHHHhcC
Q 018253 145 ATEQGFAVGMHAALHINP----YYG-----KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV----IHTMAQS 209 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP----~y~-----~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~----l~~La~~ 209 (359)
.|+.++++|+|++++..- .+. ..+-++++.|-++|++. .|+++=|.|. +++. +++. ..+|.+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~sy~-~~e~a~~na~rl~~e 104 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-MSYA-TPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-CCCC-CHHHHHHHHHHHHHH
Confidence 467788899999998653 222 36789999999999986 6999999994 5675 4655 3455555
Q ss_pred CCeEEEeccCchh---hHhhhhCCceEEE
Q 018253 210 PNLAGVKECVGND---RVEHYTGNGIVVW 235 (359)
Q Consensus 210 pnivGiK~ss~d~---~l~~~~~~~~~v~ 235 (359)
-...|+|.+.+.. ++..+...++.|+
T Consensus 105 aGa~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 105 TGANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred hCCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 6899999998752 3444444445444
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.6 Score=39.96 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc--cCccCcCCCCH-HHHHHHHHHHHHhhCCCcEEEEecCCCCH--HHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNST--REAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~--GstGE~~~LT~-~Er~~li~~~v~~~~grvpViagvg~~st--~~ai~la~~a 149 (359)
.-+.+.+..-++++.+.|.+-|+++ |+ ..+...+. .=-.+.+....+.. .+||+++.++..- +-...+++.|
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AA 208 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGV-RGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIA 208 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCCccccccCHHHHHHHHHHh--CCCeEECCCCCCcccchHHHHHHHH
Confidence 4778899999999999999888887 55 44554422 22223344444434 5899998884321 2245778899
Q ss_pred HhCCCCEEEEc
Q 018253 150 FAVGMHAALHI 160 (359)
Q Consensus 150 ~~~Gadav~v~ 160 (359)
.++|||++++-
T Consensus 209 vA~GAdGl~IE 219 (250)
T PRK13397 209 KAVGANGIMME 219 (250)
T ss_pred HHhCCCEEEEE
Confidence 99999999875
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=88.51 E-value=2.3 Score=39.79 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....+.+.+.+.|+++|.+-+..+-. .. =..+.++.+.+.++ .+|||+.=+=.+.+++.++.+ .|||+||+
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~---~~-a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~----~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGK---PY-ADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLK----AGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCC---ch-hhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHH----hCCCeEEE
Confidence 34577777889999999885322110 00 12455666666653 489887555557788888776 49999999
Q ss_pred cCCCC
Q 018253 160 INPYY 164 (359)
Q Consensus 160 ~pP~y 164 (359)
.-..+
T Consensus 220 gR~~l 224 (231)
T TIGR00736 220 ARAIL 224 (231)
T ss_pred cHhhc
Confidence 86544
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=88.46 E-value=8.6 Score=38.27 Aligned_cols=99 Identities=6% Similarity=-0.082 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~G 153 (359)
+-++..+++|++.+-+..++++. ...|.+|-.+.+..+++.+. ....|.++. +..+.+..+++++.+.++|
T Consensus 76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG 155 (365)
T ss_pred HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC
Confidence 33556667788877777777763 34566665544444444432 123444443 2335667777777777777
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+|.+.+. =.....+++++.+.++.+.+.
T Consensus 156 a~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 156 ADRFRFA-DTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred cCEEEEc-ccCCCCCHHHHHHHHHHHHHh
Confidence 7765433 334455677777777777665
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=88.39 E-value=3.3 Score=41.25 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+. +++-+ -++.|.+-+.+.++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ +|+=++ ++++
T Consensus 123 ~~G~~v~-~~~ed-a~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~li~~l~~~~~--~~l~~H-~Hnd 194 (363)
T TIGR02090 123 EHGLIVE-FSAED-ATRTDIDFLIKVFKRAEEAGADRINIADTVG---VLTPQKMEELIKKLKENVK--LPISVH-CHND 194 (363)
T ss_pred HcCCEEE-EEEee-cCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHhcccC--ceEEEE-ecCC
Confidence 4564433 33332 3568999999999999999999999999999 7899999999998887653 555444 4678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~~ 178 (359)
..-++..+..|.++||+.+-..---. ...+-++++.+.+.
T Consensus 195 ~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 195 FGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred CChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHHH
Confidence 88899999999999999886654333 22445666666543
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.38 E-value=4.4 Score=37.81 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=75.6
Q ss_pred cCcCcc-cccccCCCCCCCCCCCcccccCCCCCCCccccccccCCcccc-cCCceEEeeecCCCCCCCCCHHHHHHHHHH
Q 018253 10 NLSNCG-PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDI-KALRLITAIKTPYLPDGRFDLEAYDDLVNM 87 (359)
Q Consensus 10 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gi~~al~TPF~~dg~ID~~~l~~li~~ 87 (359)
.||.|| ++....+.-+.+|-|..+-.. +| |+.+ ++.|+--|++||= +++|+ .
T Consensus 48 ~Lse~Gl~~vEtTSFVSpKWVPQl~D~~----------ev-----~k~i~~~~Gv~yPVLtPN-------lkGf~----~ 101 (316)
T KOG2368|consen 48 RLSECGLQVVETTSFVSPKWVPQLADHN----------EV-----MKGIRKFPGVSYPVLTPN-------LKGFE----A 101 (316)
T ss_pred HHHHcCCceeeeecccCccccccccchH----------HH-----HHhhhcCCCccccccCcc-------hhhHH----H
Confidence 378888 566677778889988765321 11 2222 5899999999993 34443 4
Q ss_pred HHHCCCCEEEEccCccCcCCCC-----HHHHHHHHHHHHHhhC-------CCcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 88 QIVNGAEGMIVGGTTGEGQLMS-----WDEHIMLIGHTVNCFG-------ASVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 88 li~~Gv~Gl~v~GstGE~~~LT-----~~Er~~li~~~v~~~~-------grvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
-+++|+.-+.++|..+|.++|. .||-..-++.+.+.+. |=+-..+|+ |+-......+-++...+.
T Consensus 102 AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~m 181 (316)
T KOG2368|consen 102 AVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEM 181 (316)
T ss_pred HHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhC
Confidence 5689999999999999999874 5554444444333321 222233333 334455555555555555
Q ss_pred CCCEEEE
Q 018253 153 GMHAALH 159 (359)
Q Consensus 153 Gadav~v 159 (359)
|.--+.+
T Consensus 182 GCyEiSL 188 (316)
T KOG2368|consen 182 GCYEISL 188 (316)
T ss_pred CcEEEec
Confidence 5544443
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.35 E-value=24 Score=33.71 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=111.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc----------------CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG----------------QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~----------------~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
--|.-|++...+.+..|++.|+|.|=++=-.+.- .-+|.+.-.++++.+.+. +.++|++.=+.
T Consensus 24 t~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~-~~~~Pivlm~Y 102 (265)
T COG0159 24 TAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK-GVKVPIVLMTY 102 (265)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCEEEEEe
Confidence 3566899999999999999999987655444332 246778888888877653 45789877665
Q ss_pred CCC-HHH-HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCC-
Q 018253 136 SNS-TRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSP- 210 (359)
Q Consensus 136 ~~s-t~~-ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~p- 210 (359)
.|- ..- .-++.+++++.|+|++++. -. ..|+-. .|...++. +-.+..=.| .-+.+.++++++..
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivp--DL---P~ee~~-~~~~~~~~~gi~~I~lvaP-----tt~~~rl~~i~~~a~ 171 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVP--DL---PPEESD-ELLKAAEKHGIDPIFLVAP-----TTPDERLKKIAEAAS 171 (265)
T ss_pred ccHHHHhhHHHHHHHHHHcCCCEEEeC--CC---ChHHHH-HHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHhCC
Confidence 554 333 3346999999999999985 22 122222 33334433 433333344 34578888888643
Q ss_pred ---------CeEEEeccCchh------hHhhhhCCceEEEecCC----chhhhhhhhcCCceeecccccccHHHHHHHHH
Q 018253 211 ---------NLAGVKECVGND------RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLVPGMMRELMF 271 (359)
Q Consensus 211 ---------nivGiK~ss~d~------~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ 271 (359)
.+.|.+....+. +++++. +.-+..|.. ++.- ..... +||+|.|++ ++++.+
T Consensus 172 GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~-~v~~~-ADGVIVGSA------iV~~i~ 241 (265)
T COG0159 172 GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAA-QVAEA-ADGVIVGSA------IVKIIE 241 (265)
T ss_pred CcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHH-HHHHh-CCeEEEcHH------HHHHHH
Confidence 344444442211 344443 445566553 2332 33566 999999964 666666
Q ss_pred cC
Q 018253 272 GG 273 (359)
Q Consensus 272 ag 273 (359)
++
T Consensus 242 ~~ 243 (265)
T COG0159 242 EG 243 (265)
T ss_pred hc
Confidence 55
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=88.35 E-value=24 Score=33.66 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhCCC
Q 018253 139 TREAIHATEQGFAVGM 154 (359)
Q Consensus 139 t~~ai~la~~a~~~Ga 154 (359)
.+...+.++.|++.|.
T Consensus 117 ~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 117 VRNLEVAIKAVKKAGK 132 (275)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4445555555555553
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.34 E-value=8.8 Score=36.34 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
+.+.+.++.|++.|.. +.+.+|+-...+.+.+.+.++++.+..+
T Consensus 114 ~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 157 (268)
T cd07940 114 ERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVEAAIEAGA 157 (268)
T ss_pred HHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHHHHHHcCC
Confidence 4444556666666653 4455555555566666666666655533
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=8.2 Score=39.68 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+.++ +||-++. +++.--++.-+-.|.++||
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~lv~alk~~~~--~pi~~H~-Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKDMAG---ILTPYVAYELVKRIKEAVT--VPLEVHT-HATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEEe-cCCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999999999999 5789999999999888773 7876655 5677788888899999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-++++..++
T Consensus 224 d~vD~sv~glg~gaGN~~tE~lv~~L~ 250 (448)
T PRK12331 224 DIIDTAISPFAGGTSQPATESMVAALQ 250 (448)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 988444 344333 33455555543
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.29 E-value=5 Score=38.62 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecC---------CCCHHHHHHHHHHH-
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTG---------SNSTREAIHATEQG- 149 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg---------~~st~~ai~la~~a- 149 (359)
.++..++.|++.+.+=+++ ++.+|..++.+.+++.+.. .++| +.++| +.++ ...+.++.+
T Consensus 89 ~i~~Al~~G~tsVm~d~s~-----~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~-t~~eea~~f~ 162 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSH-----LPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLL-TSTTEAKRFA 162 (281)
T ss_pred HHHHHHHcCCCEEEEcCCC-----CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccccee-CCHHHHHHHH
Confidence 5566788999999998875 6789999999998887643 3554 22333 1111 122333333
Q ss_pred HhCCCCEEEE--cCCCCCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 150 FAVGMHAALH--INPYYGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 150 ~~~Gadav~v--~pP~y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++.|+|.+-+ -+-+-..+ .+.-=++.+++|.+. .|+++.= |..++++.+.++.+
T Consensus 163 ~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG-----~SGI~~e~~~~~i~ 221 (281)
T PRK06806 163 EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHG-----GSGISPEDFKKCIQ 221 (281)
T ss_pred HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEEC-----CCCCCHHHHHHHHH
Confidence 3468888877 32221111 111123345555544 5766652 23466666666543
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.20 E-value=9.3 Score=41.89 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc----------------CcCCCCHHHHHHHHHHHHHhh----CCC
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIGHTVNCF----GAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~li~~~v~~~----~gr 127 (359)
+++.+.++++++. ..++|.|||=+.+..| |+-- |.+.|.+++..+++.+ +.+
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 4666666666554 4569999998877633 3222 5677877776666654 445
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.||.+=++ +.+.++++++++..++.|+|.+-+..+.+
T Consensus 619 ~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 619 KPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred CeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 56655333 34688999999999999999998875543
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=6.5 Score=35.99 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++.+.+.|++-+++.+...+.+ +.++-.++++.+.+. ..+++++++. +.++ ++.+.+.|+|.+.+..-
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p--~~~~~~~~i~~~~~~--~~i~vi~~v~--t~ee----~~~a~~~G~d~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRP--DGETLAELVKRIKEY--PGQLLMADCS--TLEE----GLAAQKLGFDFIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCC--CCCCHHHHHHHHHhC--CCCeEEEeCC--CHHH----HHHHHHcCCCEEEcCCc
Confidence 557888999999666655443311 114556777776664 5688888765 3444 46788999998865321
Q ss_pred CC-CC--CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 163 YY-GK--TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 163 ~y-~~--~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
-+ .. ........+.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~~~~iPvia-------~GGI~t~~~~~~~l~~ 194 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLKAVGCPVIA-------EGRINTPEQAKKALEL 194 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHHhCCCCEEE-------ECCCCCHHHHHHHHHC
Confidence 11 00 0111124566666654 46553 2346 57888887654
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=88.18 E-value=6 Score=37.20 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=65.4
Q ss_pred HCCCCEEEEccCccC-------cCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CC-CCHHHHHHHHHHHHhCCCCEEEE
Q 018253 90 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 90 ~~Gv~Gl~v~GstGE-------~~~LT~~Er~~li~~~v~~~~grvpViagv--g~-~st~~ai~la~~a~~~Gadav~v 159 (359)
++|++.+++.|+.+= ...+|.+|-...++.+.+.+. .+||++-. |. .+.+++++.++...++||+++-+
T Consensus 30 ~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 30 DAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEE
Confidence 469999999886542 135789998888888877653 57999954 32 25699999999999999999988
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc-CCeEE
Q 018253 160 INPYYGKTSLEGLISHFDSVLSM-GPTII 187 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a-~Piii 187 (359)
-- +.+..+-.+.+.++ .||+-
T Consensus 109 ED-------~~~~~~~i~ai~~a~i~Via 130 (240)
T cd06556 109 EG-------GEWHIETLQMLTAAAVPVIA 130 (240)
T ss_pred cC-------cHHHHHHHHHHHHcCCeEEE
Confidence 64 34555555666555 56553
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.2 Score=44.23 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=60.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+.+.|++||.|.|.-|-..--...--..|. .+++.+++++|||+-=|=-+-.|.+ .|..+|||+|.+.-|+.
T Consensus 239 a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~-~i~~~~~~~~~i~~dgGir~g~Dv~----kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 239 AKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALP-EIRAAVGDDIPIIADGGIRRGLDVA----KALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHH-HHHHHHTTSSEEEEESS--SHHHHH----HHHHTT-SEEEESHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCccccccccccH-HHHhhhcCCeeEEEeCCCCCHHHHH----HHHHcCCCeEEEccHHH
Confidence 345788999999999888875443333333333 4455567899999854433444433 35669999999999987
Q ss_pred CCC---CHHHHHHHHHHHHhc
Q 018253 165 GKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~~---s~~~l~~yf~~Ia~a 182 (359)
+.. .++++.++++.+.+.
T Consensus 314 ~~l~~~g~~gv~~~~~~l~~e 334 (356)
T PF01070_consen 314 YALAAGGEEGVERVLEILKEE 334 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 653 567787777766543
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.7 Score=40.79 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=54.5
Q ss_pred HHHHHHCCCCEEEEccC--ccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecC--CCCHHHHHHHHHHHHhCCCCEEE
Q 018253 85 VNMQIVNGAEGMIVGGT--TGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTG--SNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~Gs--tGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg--~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...++.|+|.|++++. ++-.. .+|.+|-.+.++.+-+. +.++-|.+++. ....+...+..+.+.+.|+|++.
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHc-CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE
Confidence 34567889999998876 33334 49999988888776552 33344444443 22344457889999999999999
Q ss_pred EcCCC
Q 018253 159 HINPY 163 (359)
Q Consensus 159 v~pP~ 163 (359)
+.-|.
T Consensus 98 v~Dpg 102 (347)
T COG0826 98 VADPG 102 (347)
T ss_pred EcCHH
Confidence 98875
|
|
| >PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=5 Score=40.09 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-EecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVi-agvg~~st~~ai~la~~a~ 150 (359)
.|..|.+-=++-++.+.+.|.+|+.+.| +.|| +.+|+.++++.+.+......|.. .|+| +..+.++. .
T Consensus 189 QGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~~v~~~~~~lp~~kPryl~Gvg--~P~~i~~~----v 258 (366)
T PRK00112 189 QGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGE----PKEEMYRILEHTAPLLPEDKPRYLMGVG--TPEDLVEG----V 258 (366)
T ss_pred eCCccHHHHHHHHHHHHhCCCceeEeccccCCC----CHHHHHHHHHHHHhhCCCcCCeEecCCC--CHHHHHHH----H
Confidence 6778888778888899999999999999 5788 88999999999999998877864 4766 46666544 4
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
.+|+|-+=.+-|..
T Consensus 259 ~~GvD~FD~~~p~r 272 (366)
T PRK00112 259 ARGVDMFDCVMPTR 272 (366)
T ss_pred HcCCCEEeeCCccc
Confidence 59999775555543
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.10 E-value=4.4 Score=39.57 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEccCc-----cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNG-AEGMIVGGTT-----GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~G-v~Gl~v~Gst-----GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
..+++..++..+.+.+ ++.+-+|=|. |...--..+.-.++++.+.+.. ++||++=++- +..+..+.|+.+.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~--~~Pv~vKl~P-~~~di~~iA~~~~ 183 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT--KVPVFVKLAP-NITDIDEIAKAAE 183 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc--cCceEEEeCC-CHHHHHHHHHHHH
Confidence 4567777777777777 8998887553 2222224456666666666654 4899998886 8999999999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
+.|+|++.+++-..
T Consensus 184 ~~g~Dgl~~~NT~~ 197 (310)
T COG0167 184 EAGADGLIAINTTK 197 (310)
T ss_pred HcCCcEEEEEeecc
Confidence 99999999997544
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=87.98 E-value=4 Score=39.00 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p---------P~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
++.=++.++.+. --|+.++++|+|++++.. |-....+.+++..|.+.|++. .|.++=|.|. .
T Consensus 14 g~~i~~~tayD~------~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf-g 86 (264)
T PRK00311 14 GEKIVMLTAYDY------PFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF-G 86 (264)
T ss_pred CCCEEEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC-C
Confidence 343345566553 346677788999998642 223346789999999999987 5778888883 4
Q ss_pred CCCCCHHH----HHHHhcCCCeEEEeccCchh---hHhhhhCCceEE
Q 018253 195 GQDIPPRV----IHTMAQSPNLAGVKECVGND---RVEHYTGNGIVV 234 (359)
Q Consensus 195 g~~ls~e~----l~~La~~pnivGiK~ss~d~---~l~~~~~~~~~v 234 (359)
++..+++. ..++.+.-.+.|+|.+.+.. +++...+.++.|
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV 133 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPV 133 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCE
Confidence 66677754 34455556899999988752 455544445444
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.97 E-value=21 Score=32.62 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=94.5
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
...++++.+-.. |.+...+.++.+++.|+.-+=+-=++ + .-.+.++...+..+. ++++|+|+-
T Consensus 8 ~~~~~~~v~r~~-------~~~~~~~~~~a~~~gGi~~iEvt~~~-~-------~~~~~i~~l~~~~~~--~~~iGaGTV 70 (206)
T PRK09140 8 TKLPLIAILRGI-------TPDEALAHVGALIEAGFRAIEIPLNS-P-------DPFDSIAALVKALGD--RALIGAGTV 70 (206)
T ss_pred HhCCEEEEEeCC-------CHHHHHHHHHHHHHCCCCEEEEeCCC-c-------cHHHHHHHHHHHcCC--CcEEeEEec
Confidence 345666665443 88999999999999999977554222 2 233356666665542 588899987
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
-+.+. ++.|.++|||.++. |.+ ..++.++.+.. ..|++ | | ..+++.+.+-.+ --.++++
T Consensus 71 ~~~~~---~~~a~~aGA~fivs--p~~----~~~v~~~~~~~--~~~~~----~---G-~~t~~E~~~A~~~Gad~vk~- 130 (206)
T PRK09140 71 LSPEQ---VDRLADAGGRLIVT--PNT----DPEVIRRAVAL--GMVVM----P---G-VATPTEAFAALRAGAQALKL- 130 (206)
T ss_pred CCHHH---HHHHHHcCCCEEEC--CCC----CHHHHHHHHHC--CCcEE----c---c-cCCHHHHHHHHHcCCCEEEE-
Confidence 77664 46677899998776 433 35566554421 12222 2 3 355555554443 2345544
Q ss_pred ccCch---hhHhh---hhC--CceEEEecCCchhhhhhhhcCCceeecc
Q 018253 217 ECVGN---DRVEH---YTG--NGIVVWSGNDDQCHDARWNHGATGVISV 257 (359)
Q Consensus 217 ~ss~d---~~l~~---~~~--~~~~v~~G~d~~~~~~~l~~Ga~G~is~ 257 (359)
..+.. ..+.. ... -.+-...|-...-+...+..|++|+..+
T Consensus 131 Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~ 179 (206)
T PRK09140 131 FPASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLG 179 (206)
T ss_pred CCCCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEe
Confidence 11111 12322 222 2344455776555566788999987644
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.6 Score=38.67 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++.+.+.|++.+++.+.+-++..-. .-.++++.+.+.+ ++||+++=|-.+.++..++. +.|+|++++.
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~----~~Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSG--PNFELYKELAAAT--GIPVIASGGVSSLDDIKALK----ELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCC--CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHH----HCCCCEEEEe
Confidence 34567777899999999987654444322 2245666666655 58999987777777655443 3599999998
Q ss_pred CCCCCC
Q 018253 161 NPYYGK 166 (359)
Q Consensus 161 pP~y~~ 166 (359)
.-.|..
T Consensus 220 ~~~~~~ 225 (234)
T cd04732 220 KALYEG 225 (234)
T ss_pred HHHHcC
Confidence 766543
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.4 Score=44.10 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCC-CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~-LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
....++++.++++|++-|++-|+|=+..+ -...+...+.+.. +.. ++|||+|-. .+.+++ +++.+.|||+|
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i-~~~--~IPVI~G~V-~t~e~A----~~~~~aGaDgV 213 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI-GEL--DVPVIAGGV-NDYTTA----LHLMRTGAAGV 213 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH-HHC--CCCEEEeCC-CCHHHH----HHHHHcCCCEE
Confidence 35667888889999999999988722111 1112234444433 333 689998332 234444 44555899999
Q ss_pred E
Q 018253 158 L 158 (359)
Q Consensus 158 ~ 158 (359)
+
T Consensus 214 ~ 214 (369)
T TIGR01304 214 I 214 (369)
T ss_pred E
Confidence 9
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.86 E-value=8.6 Score=36.93 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+.|.+-+.++++.+.+.|++.|.+.-|+|- +++.+-.++++.+.+... .+|+=++. +++..-++..+-.|.++|+
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~l~~~l~~~~~-~~~i~~H~-Hnd~Gla~AN~laA~~aGa 217 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIMLPDTLGI---LSPFETYTYISDMVKRYP-NLHFDFHA-HNDYDLAVANVLAAVKAGI 217 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999999999995 688888888888887653 56765554 6788899999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 155 HAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
+.+=..---.. ..+-|+++.+++
T Consensus 218 ~~vd~s~~GlGe~aGN~~~E~~v~~L~ 244 (280)
T cd07945 218 KGLHTTVNGLGERAGNAPLASVIAVLK 244 (280)
T ss_pred CEEEEecccccccccCccHHHHHHHHH
Confidence 98866543332 234566666653
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.82 E-value=25 Score=33.27 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v 121 (359)
++.++++.+.++|++|+++. -|..+|..++++.+.
T Consensus 103 G~e~f~~~~~~aGvdgviip-------Dlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA-------DLPLEESGDLVEAAK 137 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC-------CCChHHHHHHHHHHH
Confidence 45666666667777776654 234455555444443
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.9 Score=39.76 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHH------------------HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDL------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~l------------------i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~ 120 (359)
-.|+-..+.+++++ +++++-++.+ ...-++.|++||+|--..|-..--+..- ++.+..+
T Consensus 195 ~sg~~~~~~~~id~--Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAt-I~~L~Ev 271 (363)
T KOG0538|consen 195 DSGLAAYVSSQIDP--SLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPAT-IEALPEV 271 (363)
T ss_pred chhhhhhhhcCCCC--CCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccch-HHHHHHH
Confidence 45666666666643 4444443322 3445689999999998888877666654 5566677
Q ss_pred HHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 018253 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 121 v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~ 167 (359)
++++.+|+||+.-=|--+-.+. -.|-++||.+|.+--|+.+..
T Consensus 272 v~aV~~ri~V~lDGGVR~G~DV----lKALALGAk~VfiGRP~v~gL 314 (363)
T KOG0538|consen 272 VKAVEGRIPVFLDGGVRRGTDV----LKALALGAKGVFIGRPIVWGL 314 (363)
T ss_pred HHHhcCceEEEEecCcccchHH----HHHHhcccceEEecCchheee
Confidence 8899999999983332222222 235669999999999987653
|
|
| >COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.77 E-value=7.1 Score=39.20 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--++.+...+++--++..|||=+====.--+....-.+||...+-.+++ .++.++--.+++++. ++|
T Consensus 158 lgtivKPklGl~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~-~~E 236 (429)
T COG1850 158 LGTIVKPKLGLSPEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAP-CEE 236 (429)
T ss_pred cccccCcccCCCHHHHHHHHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEeeccCC-HHH
Confidence 344556666689999999999999999995422112223445567888766555555 345555557799987 999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC-------CCCCCCHHHHHHHh
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR-------TGQDIPPRVIHTMA 207 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~-------tg~~ls~e~l~~La 207 (359)
..+.++.|+++|++++|+= +.... =...+|+++. +..++.|+=.+.. -+..++.-+++++.
T Consensus 237 M~rrae~a~elG~~~~mid---i~~~G-~~a~q~lre~-~d~gl~ihaHramh~a~tr~p~~Gis~~vlaK~~ 304 (429)
T COG1850 237 MMRRAELAAELGANYVMID---IVVTG-FTALQYLRED-EDIGLAIHAHRAMHAAFTRSPNHGISFLVLAKLL 304 (429)
T ss_pred HHHHHHHHHHcCCCEEEEE---EEecc-cHHHHHHHhc-ccCCceEEechhhhhhhhcCCCCCccHHHHHHHH
Confidence 9999999999999999985 22211 2356677776 3333333322111 12345666666554
|
|
| >COG1609 PurR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.73 E-value=16 Score=35.71 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc-EEEEecCCCCHHHHHHHHHHHHhCC--
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFAVG-- 153 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv-pViagvg~~st~~ai~la~~a~~~G-- 153 (359)
|+++.+..+++|++.|.+-+.+.+..- ...+..+|.+-++.+.+..+-.. +..+..+..+.+...+.++.....+
T Consensus 159 n~~~~~~a~~~L~~~G~~~i~~i~~~~--~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~ 236 (333)
T COG1609 159 NFAGAYLATEHLIELGHRRIAFIGGPL--DSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEP 236 (333)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEeCCC--ccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCC
Confidence 678899999999999988766665544 66677999999988888776655 5666666668888888888888755
Q ss_pred -CCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC----eEEEeC
Q 018253 154 -MHAALHINPYYGKTSLEGLISHFDSVLSMGP----TIIYNV 190 (359)
Q Consensus 154 -adav~v~pP~y~~~s~~~l~~yf~~Ia~a~P----iiiYn~ 190 (359)
.+|++...-.. .-+++++.++..-..| |+=||.
T Consensus 237 ~ptAif~~nD~~----Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 237 RPTAIFCANDLM----ALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred CCcEEEEcCcHH----HHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 67888763222 2334444433332245 666765
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=87.70 E-value=6 Score=36.28 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...+.++.+.+.|+++|.+.+. + +. .+++.+.+ ..++++..+.. . +.++.+.+.|+|.+.
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~~~--~----~~----~~~~~~~~---~~i~~i~~v~~--~----~~~~~~~~~gad~i~ 127 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFSFG--P----PA----EVVERLKA---AGIKVIPTVTS--V----EEARKAEAAGADALV 127 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEcCC--C----CH----HHHHHHHH---cCCEEEEeCCC--H----HHHHHHHHcCCCEEE
Confidence 45667788888999999998654 2 22 23333332 25788776642 2 556677778999988
Q ss_pred EcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhc
Q 018253 159 HINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQ 208 (359)
Q Consensus 159 v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La~ 208 (359)
+.++.- .........++++++.+. .|+++= - .++ ++.+.++.+
T Consensus 128 ~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~-----G--GI~~~~~v~~~l~ 176 (236)
T cd04730 128 AQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAA-----G--GIADGRGIAAALA 176 (236)
T ss_pred EeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEE-----C--CCCCHHHHHHHHH
Confidence 865421 111111345667777664 576652 1 354 477777554
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=87.66 E-value=20 Score=32.01 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc---cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~---GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
..|++.+.+.++.+.+.|++-+=+. |..-....++. +.++.+.+.. +.|+.+++...... +.++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~----~~v~~i~~~~--~~~v~v~lm~~~~~---~~~~~~~~ 77 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGP----PVLEALRKYT--DLPIDVHLMVENPD---RYIEDFAE 77 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCH----HHHHHHHhcC--CCcEEEEeeeCCHH---HHHHHHHH
Confidence 4788999999999999999987664 12222222333 3444444332 45776777666554 56778889
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE--ecc--Cch-----
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV--KEC--VGN----- 221 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi--K~s--s~d----- 221 (359)
+|+|++.+.. ..+ ++..++.+.+-.. ..+++--.| .-+.+.++++.+....+++ .+. ++.
T Consensus 78 ~gadgv~vh~----~~~-~~~~~~~~~~~~~g~~~~~~~~~-----~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 78 AGADIITVHP----EAS-EHIHRLLQLIKDLGAKAGIVLNP-----ATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred cCCCEEEEcc----CCc-hhHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 9999988742 111 3344444444333 233332222 2236777777654443333 111 111
Q ss_pred --hh---HhhhhC---CceEE--EecCCchhhhhhhhcCCceeecccccc
Q 018253 222 --DR---VEHYTG---NGIVV--WSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 222 --~~---l~~~~~---~~~~v--~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.. ++++.+ +++.+ -.|-...-+...+..|++|++.+.+-+
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 12 222222 22333 334444444444678999999886544
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=22 Score=34.22 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=62.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEE----------------------------
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVI---------------------------- 131 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpVi---------------------------- 131 (359)
+...++.+++.|++.+.+= -..++.+|..++++...+.... ++++|
T Consensus 146 ~~~~~~~~l~~g~~~vqlR-----~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~ 220 (312)
T PRK08999 146 FLARLERALAAGIRLIQLR-----APQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAA 220 (312)
T ss_pred HHHHHHHHHHCCCcEEEEe-----CCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhh
Confidence 5556667778999887762 2346788888888777764322 34444
Q ss_pred --------EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCH---HH-HHHHHHHHHhc--CCeEEEeCCCCCCCC
Q 018253 132 --------GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL---EG-LISHFDSVLSM--GPTIIYNVPSRTGQD 197 (359)
Q Consensus 132 --------agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~---~~-l~~yf~~Ia~a--~PiiiYn~P~~tg~~ 197 (359)
+|++..+.++ ++.|.+.|+|.+.+.| .|...|. .. =.+.++.+++. .|++.- | .
T Consensus 221 r~~~~~~~ig~S~h~~~~----~~~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~Ai------G-G 288 (312)
T PRK08999 221 RPLPAGRWVAASCHDAEE----LARAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYAL------G-G 288 (312)
T ss_pred ccCCCCCEEEEecCCHHH----HHHHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE------C-C
Confidence 4444444443 3455667888777664 3322111 00 13445555554 466544 2 3
Q ss_pred CCHHHHHHHhc
Q 018253 198 IPPRVIHTMAQ 208 (359)
Q Consensus 198 ls~e~l~~La~ 208 (359)
|+++.+.++.+
T Consensus 289 I~~~~~~~~~~ 299 (312)
T PRK08999 289 LGPGDLEEARE 299 (312)
T ss_pred CCHHHHHHHHH
Confidence 67777777664
|
|
| >PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.61 E-value=22 Score=38.01 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----ccCcC------CCCHHHHHHHHHHHHHhh-------CCCcEEEEecCC-
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQ------LMSWDEHIMLIGHTVNCF-------GASVKVIGNTGS- 136 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~------~LT~~Er~~li~~~v~~~-------~grvpViagvg~- 136 (359)
.-|..+++..+..+.+.|+++|+++.. +|+.. .++-.+-.++++..-+.. .++..+.+|+..
T Consensus 392 d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~ 471 (612)
T PRK08645 392 DRNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFN 471 (612)
T ss_pred CcCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeC
Confidence 357788899888888999999977654 35443 134444444444321110 012234444433
Q ss_pred ---CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCC------------CCCCCCCH
Q 018253 137 ---NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPS------------RTGQDIPP 200 (359)
Q Consensus 137 ---~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~------------~tg~~ls~ 200 (359)
.+.+.-++..+.=.++|||.++.. |+| +.+.+.+|.+.+... .||+..=.|- ..|+.++.
T Consensus 472 P~~~~~~~d~~~L~~Ki~aGAdf~iTQ-~~f---d~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~vP~ 547 (612)
T PRK08645 472 PNVRNLDKEVKRLEKKIEAGADYFITQ-PVY---DEELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNEVPGITLPE 547 (612)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEec-ccC---CHHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhCCCCCCCCH
Confidence 356666666666678899976665 666 456666666665433 5776655542 23777777
Q ss_pred HHHHHHhcC
Q 018253 201 RVIHTMAQS 209 (359)
Q Consensus 201 e~l~~La~~ 209 (359)
+++++|.+.
T Consensus 548 ~l~~~l~~~ 556 (612)
T PRK08645 548 EIRERMRAV 556 (612)
T ss_pred HHHHHHHhc
Confidence 777777653
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.60 E-value=12 Score=35.28 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN---TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag---vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
+-++...++|++.+-+.-+..|. ++-.+.++.+.+. + ..|.++ ++..+.+..+++++.+.++|+|.+.+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~~-G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARKL-G--MDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHHC-C--CeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33555666777776665555543 2233333333321 1 223222 34456666777777777777775543
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc
Q 018253 160 INPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+=.+...+++++.+.++.+.+.
T Consensus 161 -~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 161 -TDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHh
Confidence 3344455666666666666655
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.4 Score=40.46 Aligned_cols=98 Identities=15% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHCCCCEEEEcc--CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe----------------cCCCCHHHHHHHHHH
Q 018253 87 MQIVNGAEGMIVGG--TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN----------------TGSNSTREAIHATEQ 148 (359)
Q Consensus 87 ~li~~Gv~Gl~v~G--stGE~~~LT~~Er~~li~~~v~~~~grvpViag----------------vg~~st~~ai~la~~ 148 (359)
.+.+.|+.|+-+.. ++|....++.++-.++++.+.+. ..||+++ +.+.|+.+++++++.
T Consensus 89 ~l~~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~---g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ 165 (337)
T cd01302 89 KLFDAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASR---GGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKF 165 (337)
T ss_pred HHHHcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhc---CCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHH
Confidence 34678999987664 34443367888888888776652 2344433 344567899999999
Q ss_pred HHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCC
Q 018253 149 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRT 194 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~t 194 (359)
|++.|.+.-.=+.|+|.-.+.+.+. ...+.+-.|-|-++
T Consensus 166 ak~~g~~vt~ev~ph~L~l~~~~~~-------~~~~~~k~~Pplr~ 204 (337)
T cd01302 166 AKNKGVKVTCEVCPHHLFLDESMLR-------LNGAWGKVNPPLRS 204 (337)
T ss_pred HHHCCCcEEEEcChhhheeCHHHhh-------CCCceEEEeCCCCC
Confidence 9988988777778888777766541 22455666766554
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=87.47 E-value=21 Score=35.13 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHH----HHHHHHhc----CC-e-EEEeCCCCCCCCCCHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS----HFDSVLSM----GP-T-IIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~----yf~~Ia~a----~P-i-iiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++..+++++...++|||.+++.-|...-.|++...+ |.++|.+. .| + ++|. ...+ ...+..+.+
T Consensus 185 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~-cg~~-----~~~~~~~~~ 258 (346)
T PRK00115 185 ADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILF-GKGA-----GELLEAMAE 258 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE-cCCc-----HHHHHHHHh
Confidence 444677788788899999998888555567666554 44666654 22 2 3343 2222 134666666
Q ss_pred CC-CeEEEeccCchh-hHhhhhCCceEEEecCC
Q 018253 209 SP-NLAGVKECVGND-RVEHYTGNGIVVWSGND 239 (359)
Q Consensus 209 ~p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~d 239 (359)
.+ +++++=.. .|. ..++..+++..+..+.|
T Consensus 259 ~~~~~is~d~~-~dl~~~k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 259 TGADVVGLDWT-VDLAEARRRVGDKKALQGNLD 290 (346)
T ss_pred cCCCEEeeCCC-CCHHHHHHHcCCCeEEEeCCC
Confidence 43 56655332 332 34444555565555554
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=87.46 E-value=2.8 Score=42.41 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhcCCe-EEEeCCCC--------CCCCCCHHHHHHHhcCCCeE
Q 018253 144 HATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSMGPT-IIYNVPSR--------TGQDIPPRVIHTMAQSPNLA 213 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a~Pi-iiYn~P~~--------tg~~ls~e~l~~La~~pniv 213 (359)
++++.|...|...++..|=-... .+.+++ +++.+.++..|+ +++..|.. .|..+..+.++++.+.|.|+
T Consensus 27 ~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~-~~~~~~a~~~p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vv 105 (422)
T cd01295 27 EFAKAVLPHGTTTVIADPHEIANVAGVDGI-EFMLEDAKKTPLDIFWMLPSCVPATPFETSGAELTAEDIKELLEHPEVV 105 (422)
T ss_pred HHHHHHHCCCcEEEEeCCCCCCcCCCHHHH-HHHHHHHhCCCceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCc
Confidence 46888999999888885422222 344544 555556666786 56677752 23456788899999889999
Q ss_pred EEecc
Q 018253 214 GVKEC 218 (359)
Q Consensus 214 GiK~s 218 (359)
|+|+.
T Consensus 106 glgE~ 110 (422)
T cd01295 106 GLGEV 110 (422)
T ss_pred EEEEe
Confidence 99986
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.8 Score=39.54 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...++++.+.+.|++.|.+-+.+.+..... .-..+.++.+.+. .++||++.=+-.+.+++.++.+. -|+|+|+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~~i~~~--~~ipvi~~Ggi~~~~d~~~~l~~---~gad~V~ 211 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSG-PADWDYIAEIKEA--VSIPVIANGDIFSLEDALRCLEQ---TGVDGVM 211 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCC-CCCHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHh---cCCCEEE
Confidence 5788888889999999999988776542111 1123444455543 36898875444466666555432 3899999
Q ss_pred EcCCCCCCC
Q 018253 159 HINPYYGKT 167 (359)
Q Consensus 159 v~pP~y~~~ 167 (359)
+.-+.+..|
T Consensus 212 igr~~l~~P 220 (231)
T cd02801 212 IGRGALGNP 220 (231)
T ss_pred EcHHhHhCC
Confidence 998888655
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=29 Score=33.60 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+++.+.+.+.++.+.+.|++.+++. .||-..+..+.-.++++.+.+. ..+.+-..++.. ++ +.++..+++|+
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~--gG~~~~~~~~~l~~l~~~i~~~--~~l~i~~~~g~~-~~---e~l~~Lk~aG~ 140 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQ--SGEDPYYTDEKIADIIKEIKKE--LDVAITLSLGER-SY---EEYKAWKEAGA 140 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCCCHHHHHHHHHHHHcc--CCceEEEecCCC-CH---HHHHHHHHcCC
Confidence 4677888888888888899988875 3444556667777777776654 245555555543 23 34455566898
Q ss_pred CEEEEcCCCC--------C-CCCHHHHHHHHHHHHhc-C---CeEEEeCCCC
Q 018253 155 HAALHINPYY--------G-KTSLEGLISHFDSVLSM-G---PTIIYNVPSR 193 (359)
Q Consensus 155 dav~v~pP~y--------~-~~s~~~l~~yf~~Ia~a-~---PiiiYn~P~~ 193 (359)
+.+.+-.=.. . +.+.++..+-.+.+.+. . .-+++..|..
T Consensus 141 ~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpge 192 (323)
T PRK07094 141 DRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQ 192 (323)
T ss_pred CEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCC
Confidence 8887633211 1 23556666666655554 2 4466766654
|
|
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=87.43 E-value=11 Score=33.07 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=79.0
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE---ecCC---------CC------HHHHHHHHH
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---NTGS---------NS------TREAIHATE 147 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia---gvg~---------~s------t~~ai~la~ 147 (359)
+.+.+.|.++|=+....+.....-.++..++.+.+.+ . .+.|.. .... .. .+...+.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-Y--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-T--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-c--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 5567788888887776665444333344444444333 3 344322 1111 11 667788888
Q ss_pred HHHhCCCCEEEEcCC---CCCCCCH----HHHHHHHHHHHhc-----CCeEEEeCCCCCCC-CCCHHHHHHHh-c--CCC
Q 018253 148 QGFAVGMHAALHINP---YYGKTSL----EGLISHFDSVLSM-----GPTIIYNVPSRTGQ-DIPPRVIHTMA-Q--SPN 211 (359)
Q Consensus 148 ~a~~~Gadav~v~pP---~y~~~s~----~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~-~ls~e~l~~La-~--~pn 211 (359)
.|+.+|++.+.+.++ .....+. +.+.+.++.+++. +-+.+.|.|..... ..+.+.+.++. + .||
T Consensus 79 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp HHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred HHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 899999999988877 3433332 4466677777653 47889998865432 23456777766 3 577
Q ss_pred eEEEeccCch
Q 018253 212 LAGVKECVGN 221 (359)
Q Consensus 212 ivGiK~ss~d 221 (359)
+|+-...++
T Consensus 159 -~~i~~D~~h 167 (213)
T PF01261_consen 159 -VGICFDTGH 167 (213)
T ss_dssp -EEEEEEHHH
T ss_pred -ceEEEehHH
Confidence 667665554
|
1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B .... |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=87.24 E-value=6.6 Score=37.02 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=58.4
Q ss_pred CceEEee--ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEe---
Q 018253 60 LRLITAI--KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN--- 133 (359)
Q Consensus 60 ~Gi~~al--~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViag--- 133 (359)
.+++..+ -+|+-.+. . .+.+...++..++.|++++-+--..|. .+..|..+.++.+.+.+. ..+|+++-
T Consensus 71 ~~~~~~~~~~~~~g~~~-~-~~~~~~~v~~al~~Ga~~v~~~~~~g~---~~~~~~~~~~~~i~~~~~~~g~~liv~~~~ 145 (258)
T TIGR01949 71 VGLIIHLSASTSLSPDP-N-DKRIVTTVEDAIRMGADAVSIHVNVGS---DTEWEQIRDLGMIAEICDDWGVPLLAMMYP 145 (258)
T ss_pred CcEEEEEcCCCCCCCCC-C-cceeeeeHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3355566 45553222 1 123445688899999998777665553 345666677777777553 45787763
Q ss_pred ----cCCCCHHHHHHH-HHHHHhCCCCEEEE
Q 018253 134 ----TGSNSTREAIHA-TEQGFAVGMHAALH 159 (359)
Q Consensus 134 ----vg~~st~~ai~l-a~~a~~~Gadav~v 159 (359)
++..+. +.++. ++.|.++|||.+-+
T Consensus 146 ~Gvh~~~~~~-~~~~~~~~~a~~~GADyikt 175 (258)
T TIGR01949 146 RGPHIDDRDP-ELVAHAARLGAELGADIVKT 175 (258)
T ss_pred cCcccccccH-HHHHHHHHHHHHHCCCEEec
Confidence 333333 44444 68889999998875
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=87.17 E-value=5.4 Score=39.33 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----ccCcCCCCHHHHHHHHHHHHHhhC-----CCcEEEEecCCCCH-HHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCFG-----ASVKVIGNTGSNST-REAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~~LT~~Er~~li~~~v~~~~-----grvpViagvg~~st-~~ai~la 146 (359)
..+.+.+.++.+-+ .+|++-++=| .|+-..-..+.-.++++.+.+.+. .++||++=++-+-+ ++..+++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 56788888887654 5899888543 244444456667778888877764 24899999986654 4888999
Q ss_pred HHHHhCCCCEEEEcCCCC
Q 018253 147 EQGFAVGMHAALHINPYY 164 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y 164 (359)
+.+.+.|+|++.+++-.+
T Consensus 231 ~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTV 248 (335)
T ss_pred HHHHHhCCcEEEEECCCC
Confidence 999999999999998664
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=9.4 Score=39.67 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=77.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
.+-++..+++|++.+-+..++++.+ .+|.+|-.+.+..+++.+.. ...|.++. +..+.+-.++.++.+.++
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 4447788889999999999999884 67888888877777776542 23444433 334577788999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~Piii 187 (359)
|+|.+.+ +=.....+++++.+.++.+.+. .|+-+
T Consensus 156 Ga~~i~l-~DTvG~~~P~~~~~lv~~l~~~~~v~l~~ 191 (488)
T PRK09389 156 GADRICF-CDTVGILTPEKTYELFKRLSELVKGPVSI 191 (488)
T ss_pred CCCEEEE-ecCCCCcCHHHHHHHHHHHHhhcCCeEEE
Confidence 9998655 3445566788999999998776 45544
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=87.03 E-value=4 Score=43.73 Aligned_cols=103 Identities=22% Similarity=0.123 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~ 151 (359)
.++.|.+-+.++++.+++.|++-|.++-|+|= ++++|-.++++.+.+.+++.-++.+++ .+++..-++.-+-.|.+
T Consensus 234 a~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~ 310 (632)
T PLN02321 234 AGRSDPEFLYRILGEVIKAGATTLNIPDTVGY---TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAH 310 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecccccC---CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 57799999999999999999999999999984 689999999999998876532343343 46788889999999999
Q ss_pred CCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 152 VGMHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 152 ~Gadav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+||+.+-..-==+. ..+-++++..++.
T Consensus 311 AGA~~Vd~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 311 AGARQVEVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred hCCCEEEEecccccccccCccHHHHHHHHHh
Confidence 99999866533222 2345565555543
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=86.99 E-value=13 Score=34.32 Aligned_cols=118 Identities=18% Similarity=0.025 Sum_probs=75.3
Q ss_pred EeeecCCCCCCCCCHHHH-----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecCCC
Q 018253 64 TAIKTPYLPDGRFDLEAY-----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSN 137 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l-----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg~~ 137 (359)
++++.=| +.|.-..+.- ..-++..++.|++.+-+.-..|-.-+=..++..+.++.+++.+ +..+|||+= +-.
T Consensus 57 ~~~vi~f-p~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l 134 (236)
T PF01791_consen 57 VGLVIGF-PFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYL 134 (236)
T ss_dssp EEEEEST-TTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECE
T ss_pred cceEEEe-CCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Eec
Confidence 3334444 2455555555 7888999999999987777663222222566666666666655 457899887 444
Q ss_pred CHHH---------HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC
Q 018253 138 STRE---------AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GP 184 (359)
Q Consensus 138 st~~---------ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~P 184 (359)
...+ ....+|.+.++|||.+=...|.. .....+-.+-|+++.+. .|
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSST
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCC
Confidence 4444 58888899999999999988855 44444445566666664 45
|
|
| >PLN02489 homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=86.99 E-value=23 Score=34.90 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=66.0
Q ss_pred CCHHHHHHH----HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC---------CCHHHH
Q 018253 76 FDLEAYDDL----VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------NSTREA 142 (359)
Q Consensus 76 ID~~~l~~l----i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------~st~~a 142 (359)
++.+.+... ++.+++.|||.|++ -| .-+.+|-+.+++.+.+ ...++|+++.+.- .+..++
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET-----~~~l~E~~a~~~~~~~-~~~~~p~~iS~t~~~~~~l~~G~~~~~~ 232 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAF-ET-----IPNKLEAQAYVELLEE-ENIKIPAWISFNSKDGVNVVSGDSLLEC 232 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----cCChHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCccCCCCcHHHH
Confidence 666665554 77777899998774 33 2357777777776654 3446898887632 345566
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
++.+.. ..+++++.+=- .+++.+..-.+.+... .|+++|-+.
T Consensus 233 ~~~~~~--~~~~~~iGiNC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 276 (335)
T PLN02489 233 ASIADS--CKKVVAVGINC-----TPPRFIHGLILSIRKVTSKPIVVYPNS 276 (335)
T ss_pred HHHHHh--cCCceEEEecC-----CCHHHHHHHHHHHHhhcCCcEEEECCC
Confidence 666532 23566666542 2456777777777664 699999774
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=86.93 E-value=5.8 Score=36.14 Aligned_cols=79 Identities=9% Similarity=0.044 Sum_probs=48.4
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
++...+.|++.+.+.+..+....... +.++.+.+....++||+++-|-.+.++..++ .++|||++++..-.|
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~----~~~~~l~~~~~~~~pvia~gGI~s~edi~~~----~~~Ga~gvivGsai~ 205 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDL----NTTERLAPLIPKDVILVSESGISTPEDVKRL----AEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCH----HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHH----HHcCCCEEEECHHHc
Confidence 34455667777766654443332222 4445555555456899987776555665544 446999999988777
Q ss_pred CCCCHHH
Q 018253 165 GKTSLEG 171 (359)
Q Consensus 165 ~~~s~~~ 171 (359)
...++.+
T Consensus 206 ~~~~p~~ 212 (217)
T cd00331 206 RAPDPGA 212 (217)
T ss_pred CCCCHHH
Confidence 6655433
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.88 E-value=29 Score=32.98 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEc---cCccCc---CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEG---QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~---GstGE~---~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
-.++.+...++++.|.+.||+-|=++ ++..|+ ..++.+| .++.+.+...++.++.+-+-... ..++..+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~ 89 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDE---FLRRLLGDSKGNTKIAVMVDYGN--DDIDLLE 89 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHH---HHHHHHhhhccCCEEEEEECCCC--CCHHHHH
Confidence 35888999999999999999988554 322222 2233322 33333343323456655443322 2355677
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh----cC-CCeEEEeccCch
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA----QS-PNLAGVKECVGN 221 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La----~~-pnivGiK~ss~d 221 (359)
.+.+.|+|.+-+..|. ...+.+.+..+.+-+. ..+. .+.-..++ .+++.+.+++ +. +..+.++|+.|-
T Consensus 90 ~a~~~gv~~iri~~~~---~~~~~~~~~i~~ak~~G~~v~-~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~ 163 (266)
T cd07944 90 PASGSVVDMIRVAFHK---HEFDEALPLIKAIKEKGYEVF-FNLMAISG--YSDEELLELLELVNEIKPDVFYIVDSFGS 163 (266)
T ss_pred HHhcCCcCEEEEeccc---ccHHHHHHHHHHHHHCCCeEE-EEEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 7888999988775433 2456666666666554 3333 33222223 5666666554 33 578889999986
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.4 Score=36.37 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=43.9
Q ss_pred CCCCEEEE----ccCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 91 NGAEGMIV----GGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 91 ~Gv~Gl~v----~GstGE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+++.+++ .|.||+.+ .++.. +.++.+.+.. +..+|++++= +-+. +.++.+.+.|+|++.+...+
T Consensus 125 ~~~d~i~~~~~~~g~tg~~~--~~~~~-~~i~~i~~~~~~~~~~~~i~v~G-GI~~----env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 125 PDVDLVLLMSVNPGFGGQKF--IPDTL-EKIREVRKMIDENGLSILIEVDG-GVND----DNARELAEAGADILVAGSAI 196 (210)
T ss_pred hhCCEEEEEEEcCCCCcccc--cHHHH-HHHHHHHHHHHhcCCCceEEEEC-CcCH----HHHHHHHHcCCCEEEEChHH
Confidence 46787766 47788633 33222 2333333333 2346775532 3343 33555567999999999998
Q ss_pred CCCCCHHHHHH
Q 018253 164 YGKTSLEGLIS 174 (359)
Q Consensus 164 y~~~s~~~l~~ 174 (359)
|...+.++..+
T Consensus 197 ~~~~d~~~~~~ 207 (210)
T TIGR01163 197 FGADDYKEVIR 207 (210)
T ss_pred hCCCCHHHHHH
Confidence 87666555443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=86.62 E-value=6.3 Score=39.12 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
+++.|.+-+.++++.+.+.|++-|.+.-|+|- +++.+-.++++.+.+.++ ..|+-++ .+++..-++..+-.|.++
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~---a~P~~v~~lv~~l~~~~~-~~~i~~H-~Hnd~GlA~AN~lAA~~a 265 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VDKLAVH-FHDTYGQALANILVSLQM 265 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC---cCHHHHHHHHHHHHHhCC-CCeEEEE-ECCCCChHHHHHHHHHHh
Confidence 57799999999999999999999999999996 578888899988887763 3455444 467888899999999999
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
||+.+=..-
T Consensus 266 Ga~~vd~sv 274 (347)
T PLN02746 266 GISTVDSSV 274 (347)
T ss_pred CCCEEEEec
Confidence 999886554
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=86.59 E-value=8.2 Score=33.31 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH-HHHHHHhCCCCEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH-ATEQGFAVGMHAA 157 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~-la~~a~~~Gadav 157 (359)
+...+.++.+.+.|++.+.+..............+ ++++...+.. .+|+++++..++..+.+. .++.+.++|+|++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK-EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc-cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 66778888888899988776655554443332221 2333434333 579999988776666554 3688899999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 158 LHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 158 ~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
.+.....+ ..+...++.+.+.+. .|+++.-.+
T Consensus 89 ~l~~~~~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 89 EIHGAVGY--LAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred EEeccCCc--HHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 87644321 145666777777664 466665443
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.1 Score=40.61 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccC-cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGE-GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE-~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...+++.+.+.|++.|.+-|-|.+ +++-... .-+.++.+.+.+ ++|||+.=+=.+.+++.++. +.-|+|+||+
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~-~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l---~~~g~DgVmi 223 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHI-NWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCM---AITGCDAVMI 223 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcc-cHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHH---hccCCCEEEE
Confidence 578888888999999999665543 3332211 124555556655 58987643334666666655 3469999999
Q ss_pred cCCCCCCC
Q 018253 160 INPYYGKT 167 (359)
Q Consensus 160 ~pP~y~~~ 167 (359)
.-..+..|
T Consensus 224 GRg~l~nP 231 (312)
T PRK10550 224 GRGALNIP 231 (312)
T ss_pred cHHhHhCc
Confidence 88777665
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=29 Score=32.60 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCc-cCc--CCCCHHHHHHHHHHHHHhhCCC---c----EEEEecCCCC-------HHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTT-GEG--QLMSWDEHIMLIGHTVNCFGAS---V----KVIGNTGSNS-------TREAI 143 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~Gst-GE~--~~LT~~Er~~li~~~v~~~~gr---v----pViagvg~~s-------t~~ai 143 (359)
+.+.+++..+.|.+|+=+.... .++ ..+|.++..++-+.. +..+=+ + |.....++.. .+...
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 6778899999999998444322 222 256777766655444 333222 1 2223333332 33466
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCC-CCHH----HHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh
Q 018253 144 HATEQGFAVGMHAALHINPYYGK-TSLE----GLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA 207 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~-~s~~----~l~~yf~~Ia~a---~PiiiYn~P~~t-g~~ls~e~l~~La 207 (359)
+.++.|.++|+..+.+.+..+.. ...+ .+.+.++.+.+. +.+.+=|.|... ...-+++.+.+|.
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 66777889999988887765532 2233 233344444332 467777776421 1223577777776
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.45 E-value=6.1 Score=37.54 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
-|.+.+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ +|+-++. +++..-++..+..|.++|++
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~~~~~~~~~~~--~~i~~H~-Hn~~Gla~an~~~a~~aG~~ 211 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVG---IATPRQVYELVRTLRGVVS--CDIEFHG-HNDTGCAIANAYAALEAGAT 211 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC---CCCHHHHHHHHHHHHHhcC--CeEEEEE-CCCCChHHHHHHHHHHhCCC
Confidence 4678899999999999999999999999 7899999999988887664 6765544 67788899999999999999
Q ss_pred EEEEcCCC----CCCCCHHHHHHHHH
Q 018253 156 AALHINPY----YGKTSLEGLISHFD 177 (359)
Q Consensus 156 av~v~pP~----y~~~s~~~l~~yf~ 177 (359)
.+=..-=- ....+-++++.+..
T Consensus 212 ~vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 212 HIDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EEEEeccccccccCCccHHHHHHHHH
Confidence 76554321 22344566665553
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins | Back alignment and domain information |
|---|
Probab=86.44 E-value=24 Score=32.80 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=89.8
Q ss_pred EeeecCCCCCCC---CCHHHHHH----HHHHHHHCCCCEEEEccCccCcCCCC----HHHHHHHHHHHHHhhCCCcEEEE
Q 018253 64 TAIKTPYLPDGR---FDLEAYDD----LVNMQIVNGAEGMIVGGTTGEGQLMS----WDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 64 ~al~TPF~~dg~---ID~~~l~~----li~~li~~Gv~Gl~v~GstGE~~~LT----~~Er~~li~~~v~~~~grvpVia 132 (359)
..++|=++ ||+ +..+.+.. .++.+-+.|++-++ +-.||||..|+ .=|=.+++..+++...+.- -+
T Consensus 53 ~vLvTrL~-DG~~V~ls~~~v~~~lq~~i~~le~~G~d~il-llCTG~F~~l~~~~~lleP~ril~~lV~al~~~~--~v 128 (221)
T PF07302_consen 53 YVLVTRLR-DGTQVVLSKKKVEPRLQACIAQLEAQGYDVIL-LLCTGEFPGLTARNPLLEPDRILPPLVAALVGGH--QV 128 (221)
T ss_pred ceeEEEeC-CCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE-EeccCCCCCCCCCcceeehHHhHHHHHHHhcCCC--eE
Confidence 45566554 553 56655554 44456679999766 55789999888 3355677777787765442 33
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCH-HHHHHHhcC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALH-INPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPP-RVIHTMAQS 209 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v-~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~-e~l~~La~~ 209 (359)
||-....++.-...+..+.++.+-... ..||. .+.+++.+--+++.+. ..+++-|. .|+.-.. +.+++....
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~--~~~~~l~~Aa~~L~~~gadlIvLDC---mGYt~~~r~~~~~~~g~ 203 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYE--GDEEELAAAARELAEQGADLIVLDC---MGYTQEMRDIVQRALGK 203 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCC--CCHHHHHHHHHHHHhcCCCEEEEEC---CCCCHHHHHHHHHHhCC
Confidence 555555666666888888888765544 44554 4678888888888876 67888884 4544332 234444444
Q ss_pred CCe
Q 018253 210 PNL 212 (359)
Q Consensus 210 pni 212 (359)
|-+
T Consensus 204 PVl 206 (221)
T PF07302_consen 204 PVL 206 (221)
T ss_pred CEE
Confidence 433
|
In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=86.43 E-value=28 Score=37.39 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC------CcEEEEecCCCCHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA------SVKVIGNTGSNSTRE 141 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g------rvpViagvg~~st~~ 141 (359)
.+..+.-.++++.|.+.|++-|=++ |+..|..|+.. ++.+.+.... -+++|++.+....++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvG-----fP~~Sp~D~e~-vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~d 170 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAG-----FPIASPDDLEA-VKTIAKEVGNEVDEDGYVPVICGLSRCNKKD 170 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-----CcCCCccHHHH-HHHHHHhcccCCCccccceeeeeehhccHHh
Confidence 4899999999999999999988653 33455555544 4444443322 135566555544433
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=86.42 E-value=4.4 Score=37.35 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+-+.+...-.. ..++++.+.+.+ .+||+++=|-.+.++..+.. ++.|||++++..
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~--~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l---~~~gadgV~vg~ 228 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGY--DLELIKTVSDAV--SIPVIALGGAGSLDDLVEVA---LEAGASAVAAAS 228 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCC--CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHH---HHcCCCEEEEeh
Confidence 46777788999999999985554332111 255666666655 58999876666666665533 446999999875
Q ss_pred CC
Q 018253 162 PY 163 (359)
Q Consensus 162 P~ 163 (359)
-+
T Consensus 229 a~ 230 (232)
T TIGR03572 229 LF 230 (232)
T ss_pred hh
Confidence 43
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=86.35 E-value=5.7 Score=36.61 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=55.5
Q ss_pred HHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC------------------CCHHHHHHHHHHH
Q 018253 88 QIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS------------------NSTREAIHATEQG 149 (359)
Q Consensus 88 li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~------------------~st~~ai~la~~a 149 (359)
+.+.|++++.++..+ + +..++++.+++..+.+. +++.+-. .+..+.+++++.+
T Consensus 92 ~~~~G~~~vilg~~~-----l---~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 92 LLSLGADKVSINTAA-----L---ENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred HHHcCCCEEEEChhH-----h---cCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 456799988665222 1 22345555566554431 3333221 1234568999999
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
++.|+|.+.+..-.-....+.--.++++++.+. .|++.- -|+ -+++.+.+
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~-----GGi-~s~~di~~ 214 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL-----GGA-GSLDDLVE 214 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE-----CCC-CCHHHHHH
Confidence 999999998886211100000125556666654 465433 232 36777777
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=15 Score=36.66 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHH-------HHCCCCEEEEccCccC----cCC-----------CCHHHHHHHHHHHHHhh----CCCc
Q 018253 75 RFDLEAYDDLVNMQ-------IVNGAEGMIVGGTTGE----GQL-----------MSWDEHIMLIGHTVNCF----GASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~~l-------i~~Gv~Gl~v~GstGE----~~~-----------LT~~Er~~li~~~v~~~----~grv 128 (359)
.++.+.++++++.. .++|.|||-+-|..|- |.+ =|.|-|.+++..+++.+ +.+
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~- 226 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD- 226 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-
Confidence 46667766666644 4699999999887753 222 25677887776666654 333
Q ss_pred EEEEec----------CCCCHHH-HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH-HHHHHHHHhc--CCeEEEeCCCCC
Q 018253 129 KVIGNT----------GSNSTRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGL-ISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 129 pViagv----------g~~st~~-ai~la~~a~~~Gadav~v~pP~y~~~s~~~l-~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
.|.+=+ ++.+.+| ++++++..++.|+|.+-+.-|.+... ... ..+.+.|-+. .||+.-
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~~~~~~~ik~~~~~pv~~~------ 298 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYSDAFREKVRARFHGVIIGA------ 298 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--ccccHHHHHHHHHHCCCCEEEe------
Confidence 233211 2357788 89999999999999998887644211 111 2233444444 355532
Q ss_pred CCCCCHHHHHHHhcC--CCeEEE
Q 018253 195 GQDIPPRVIHTMAQS--PNLAGV 215 (359)
Q Consensus 195 g~~ls~e~l~~La~~--pnivGi 215 (359)
|. ++++..+++.+. -.+|++
T Consensus 299 G~-~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 299 GA-YTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CC-CCHHHHHHHHHcCCCCEEEE
Confidence 33 578888887643 355555
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=9 Score=40.83 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=76.4
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|..+-..--|+-+-..+.+-+.++++.+.+.|++-|.+.-++| .|++++-.++++.+.+..+ +||=++. ++
T Consensus 133 k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG---~l~P~~v~~lv~alk~~~~--ipi~~H~-Hn 206 (596)
T PRK14042 133 KSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAG---LLTPTVTVELYAGLKQATG--LPVHLHS-HS 206 (596)
T ss_pred HHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccc---CCCHHHHHHHHHHHHhhcC--CEEEEEe-CC
Confidence 4455444443334445578999999999999999999999999999 4799999999999888763 7877665 45
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 138 STREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~p 161 (359)
+.--++..+-.|.++|||.+=..-
T Consensus 207 t~Gla~an~laAieaGad~iD~ai 230 (596)
T PRK14042 207 TSGLASICHYEAVLAGCNHIDTAI 230 (596)
T ss_pred CCCcHHHHHHHHHHhCCCEEEecc
Confidence 677788888889999999885443
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=86.02 E-value=6.2 Score=38.82 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHhCCCCEEEEcCCC---------CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH----HHHhcC
Q 018253 145 ATEQGFAVGMHAALHINPY---------YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI----HTMAQS 209 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~---------y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l----~~La~~ 209 (359)
.|+.+.++|+|.+++..-. -...+-++++.|.+.|.+. .|+++=|.|.. .+..+++.. .+|.+-
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~e 125 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLKE 125 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4677788999999987652 1235789999999999987 69999999953 356677664 455455
Q ss_pred CCeEEEeccCc
Q 018253 210 PNLAGVKECVG 220 (359)
Q Consensus 210 pnivGiK~ss~ 220 (359)
-...|||.+.+
T Consensus 126 aGa~aVKlEGg 136 (332)
T PLN02424 126 GGMDAVKLEGG 136 (332)
T ss_pred hCCcEEEECCC
Confidence 68999999988
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.93 E-value=5.2 Score=37.46 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=59.3
Q ss_pred HHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++|.+.|+..+..+|+ .|-+.-+...+-.+++ ++.+ ++|||+-.|=.+..++ -.|.++|+|+|++-..
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~ii---ie~a--~VPviVDAGiG~pSdA----a~aMElG~DaVL~NTA 213 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEII---IEEA--DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHHHHH---HHhC--CCCEEEeCCCCChhHH----HHHHhcccceeehhhH
Confidence 567888999999999884 5666666666655544 5555 8999985444445444 4567899999999877
Q ss_pred CCCCCCHHHHHHHHHH
Q 018253 163 YYGKTSLEGLISHFDS 178 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~ 178 (359)
.-...++-.+-+-|+.
T Consensus 214 iA~A~DPv~MA~Af~~ 229 (262)
T COG2022 214 IARAKDPVAMARAFAL 229 (262)
T ss_pred hhccCChHHHHHHHHH
Confidence 6655555555544443
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.87 E-value=12 Score=38.33 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC-
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN- 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p- 161 (359)
+.++.++++|++.|.+-.+.|.. +-..+.++...+.. .++||++|-.. +. +.++++.++|||++-+..
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~-----~~~~~~i~~i~~~~-~~~~vi~G~v~-t~----~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS-----IYVIDSIKEIKKTY-PDLDIIAGNVA-TA----EQAKALIDAGADGLRVGIG 295 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH-----hHHHHHHHHHHHhC-CCCCEEEEeCC-CH----HHHHHHHHhCCCEEEECCC
Confidence 44557899999999998887732 23445565555544 36899996553 33 445566679999997652
Q ss_pred CCCCCC---------CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCchh---hHh
Q 018253 162 PYYGKT---------SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RVE 225 (359)
Q Consensus 162 P~y~~~---------s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~d~---~l~ 225 (359)
|-+... .+-..+....+.++. .|||- --|+.-+-+..+.|+- .--.+|=-.+..++ .+.
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia-----dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~ 370 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA-----DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYE 370 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceE
Confidence 432111 233334444444443 46443 2466666777777773 22233333322221 111
Q ss_pred hhhCCceEEEecCC
Q 018253 226 HYTGNGIVVWSGND 239 (359)
Q Consensus 226 ~~~~~~~~v~~G~d 239 (359)
.+-+..+..|-|..
T Consensus 371 ~~~g~~~k~yrgm~ 384 (450)
T TIGR01302 371 IINGRRYKQYRGMG 384 (450)
T ss_pred EECCEEEEEEeccc
Confidence 12345667777764
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=85.83 E-value=8.2 Score=38.49 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc----CcC-----------CCCHHHHHHHHHHHHHh----hCCCc
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG----EGQ-----------LMSWDEHIMLIGHTVNC----FGASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG----E~~-----------~LT~~Er~~li~~~v~~----~~grv 128 (359)
.++.+.++.+++. ..++|.|||-+.+..| +|. -=|.+-|.+++..+++. ++.+.
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3556666555554 4568999998887764 111 11567777766666654 44456
Q ss_pred EEEEecC-----------CCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 129 KVIGNTG-----------SNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 129 pViagvg-----------~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
||.+=++ +.+.++++++++...+.|+|.+-+...
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 7765333 357789999999999999999877554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=85.77 E-value=32 Score=34.41 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc------------------------------c--C---------------cCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT------------------------------G--E---------------GQLM 108 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst------------------------------G--E---------------~~~L 108 (359)
=|.+..++++++-.++|+.+|++.--+ + + -..+
T Consensus 131 ~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (366)
T PLN02979 131 KNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTL 210 (366)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCC
Confidence 367888999999999999988871100 0 0 1245
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 109 SWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
|+++ ++...+.. ++|||+ ||.+ .+-++.+.++|+|++.+..-
T Consensus 211 tW~d----l~wlr~~~--~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 211 SWKD----VQWLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CHHH----HHHHHhcc--CCCEEeecCCC------HHHHHHHHhcCCCEEEECCC
Confidence 6655 23333333 579888 6742 55667888899999988753
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=85.77 E-value=8.1 Score=33.35 Aligned_cols=110 Identities=17% Similarity=0.059 Sum_probs=66.1
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
..++.+.|++++.+.++.+-. .++-.++++.+.+.+ ++.++++.+......+... +.+.|+|.+.+.+-..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~----~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----AREDLELIRELREAV-PDVKVVVKLSPTGELAAAA----AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhc-CCceEEEEECCCCccchhh----HHHcCCCEEEEcCCcC
Confidence 567888999999999888643 455566777777766 4678988886543322111 5778999998886544
Q ss_pred CCCCH---HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 165 GKTSL---EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 165 ~~~s~---~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
..... .........+... .|++. + .|+. +++.+.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~-~----GGi~-~~~~~~~~~~~ 191 (200)
T cd04722 148 GGGGRDAVPIADLLLILAKRGSKVPVIA-G----GGIN-DPEDAAEALAL 191 (200)
T ss_pred CCCCccCchhHHHHHHHHHhcCCCCEEE-E----CCCC-CHHHHHHHHHh
Confidence 32211 1112333334333 46544 2 2433 34777776643
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=4.2 Score=40.00 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH-------HHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~-------Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
..+.+..+++.+.+.|++.|.+-|.|+.....+.. -..+.++.+.+.+ .++|||++=+=.+.+++.++.+
T Consensus 149 t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-- 225 (333)
T PRK11815 149 SYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-- 225 (333)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh--
Confidence 35667888999999999999998877622112211 0123344444433 2689887544456777766653
Q ss_pred HhCCCCEEEEcCCCCCCC
Q 018253 150 FAVGMHAALHINPYYGKT 167 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~ 167 (359)
|+|+||+.-+.+..|
T Consensus 226 ---~aDgVmIGRa~l~nP 240 (333)
T PRK11815 226 ---HVDGVMIGRAAYHNP 240 (333)
T ss_pred ---cCCEEEEcHHHHhCC
Confidence 699999998888765
|
|
| >TIGR00587 nfo apurinic endonuclease (APN1) | Back alignment and domain information |
|---|
Probab=85.64 E-value=33 Score=32.49 Aligned_cols=127 Identities=10% Similarity=-0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCC---CHHHHHHHHHHHHHhhCC-------CcEEEEecCCCC-------HHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLM---SWDEHIMLIGHTVNCFGA-------SVKVIGNTGSNS-------TREA 142 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~L---T~~Er~~li~~~v~~~~g-------rvpViagvg~~s-------t~~a 142 (359)
.+.+-++++.+.|.+++=+.-..--++.- +.++..++-+. .+..+- ..|...+.++.+ .+..
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~ 90 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAA-LETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVL 90 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHH-HHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHH
Confidence 56778889999999998776666665543 34444444333 333321 123335555533 4446
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHH----HHHHHHHHHhc---CCeEEEeCCCCCC-CCCCHHHHHHHh
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEG----LISHFDSVLSM---GPTIIYNVPSRTG-QDIPPRVIHTMA 207 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~----l~~yf~~Ia~a---~PiiiYn~P~~tg-~~ls~e~l~~La 207 (359)
.+.++.|+.+||+.+.+.|.++...+.++ +.+.++.+.+. +++.+=|.|.... ..-+++.+.+|.
T Consensus 91 ~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll 163 (274)
T TIGR00587 91 DEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYII 163 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHH
Confidence 66677788999998888877764433333 33334444432 5788888775432 223688888887
|
All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.3 Score=42.06 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=64.1
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++...+.|++++.+.|.+.+ ..-.++++.+.+. .+++++|+.+ +...++.++.+.+.|+|.+.+. |.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~------~~~~~~i~~a~~~---G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADD------STIEDAVRAARKY---GVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCCh------HHHHHHHHHHHHc---CCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-ec
Confidence 777888999999998765432 1223455555442 3577776432 2224566788889999999765 54
Q ss_pred CCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 164 YGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 164 y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
|... ......++++++.+. .||+.- | .++++.+.++.+
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a~------G-GI~~~n~~~~l~ 181 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAVA------G-GLDAETAAKAVA 181 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEEE------C-CCCHHHHHHHHH
Confidence 4211 011234567777654 566552 1 457787777764
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=85.55 E-value=15 Score=38.47 Aligned_cols=103 Identities=13% Similarity=-0.028 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---CCCCHHHHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQG 149 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g~~st~~ai~la~~a 149 (359)
+.+++.++.+.+.|++.+.+..++++.+ ..|.+|-.+.+..+++.+.. ...|..+. +..+.+..++.++.+
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4455556666667777777777777665 55666666555555554431 23344443 234566677777777
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.++|||.+.+. =.....+++++.+.++.+.+.
T Consensus 159 ~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 159 IDAGATTINIP-DTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred HHcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHh
Confidence 77777754443 233344566677776666554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=14 Score=35.56 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEE--e-cCCC------CHHH----
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIG--N-TGSN------STRE---- 141 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpVia--g-vg~~------st~~---- 141 (359)
-|++. ++..++.|.+.+.+=|| .|+.+|-.++.+.+++.+.. .++|=+ | ++.. ...+
T Consensus 79 ~~~e~----i~~ai~~Gf~SVM~D~S-----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t 149 (283)
T PRK08185 79 ATIED----VMRAIRCGFTSVMIDGS-----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYT 149 (283)
T ss_pred CCHHH----HHHHHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCC
Confidence 35555 45567899999999887 47999999999999986543 344411 1 2210 0001
Q ss_pred HHHHHHHHHh-CCCCEEEE-----cCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 142 AIHATEQGFA-VGMHAALH-----INPYYG--KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 142 ai~la~~a~~-~Gadav~v-----~pP~y~--~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
..+.++.+.+ .|+|++.+ ...|-. ++.-+ ++..++|.+. .|++++ -|..++.+.+++..+.
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~--~e~l~~I~~~~~iPLVlH-----Ggsg~~~e~~~~ai~~ 220 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ--MDLLKEINERVDIPLVLH-----GGSANPDAEIAESVQL 220 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcC--HHHHHHHHHhhCCCEEEE-----CCCCCCHHHHHHHHHC
Confidence 2333444444 49998887 433433 23222 5566666655 688877 3556778888877654
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=85.53 E-value=18 Score=33.81 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC----------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREA 142 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gs----------tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-st~~a 142 (359)
+.-|.+.+.+.++.+ +.++++|=++-+ .|+...-..+.-.++++.+.+ ..+||.+=+... ...++
T Consensus 75 ~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~---~~~PVsvKiR~~~~~~~~ 150 (231)
T TIGR00736 75 RFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE---LNKPIFVKIRGNCIPLDE 150 (231)
T ss_pred ecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc---CCCcEEEEeCCCCCcchH
Confidence 456888899998876 558999988755 355555566656666666662 268998876643 34578
Q ss_pred HHHHHHHHhCCCCEEEEc
Q 018253 143 IHATEQGFAVGMHAALHI 160 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~ 160 (359)
+++++.+++.|+|++.+-
T Consensus 151 ~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVD 168 (231)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999773
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=85.36 E-value=11 Score=31.97 Aligned_cols=84 Identities=7% Similarity=-0.029 Sum_probs=56.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
-+..++...+.+++-+.+++..+. +.+.-.++++...+.-.++++|++|=.- ..++ .+..+++|+|++.-
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~----~~~l~~~Gvd~~~~- 111 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDKLGRPDILVVVGGVI-PPQD----FDELKEMGVAEIFG- 111 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHh----HHHHHHCCCCEEEC-
Confidence 446777888999999999988876 5666677777766644447888886211 2222 23477899998753
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 018253 161 NPYYGKTSLEGLISHFDS 178 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~ 178 (359)
...+..++.+++..
T Consensus 112 ----~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 112 ----PGTPIPESAIFLLK 125 (132)
T ss_pred ----CCCCHHHHHHHHHH
Confidence 23466777777765
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.33 E-value=24 Score=34.09 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=81.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHH----HHHHHHHHHhhCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCCEEEE
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEH----IMLIGHTVNCFGASVKVIGNTGSNSTR-EAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er----~~li~~~v~~~~grvpViagvg~~st~-~ai~la~~a~~~Gadav~v 159 (359)
++.+-+.|++..+.-+ .+|...+-...+ .++++.+.+ ...|.--.+.+--.+.+ .+.|+-|.+.+.|..++.+
T Consensus 55 ~~~~~~~~i~~~~~~~-~~~~~~~~d~~~~~~nd~~a~~~~~-~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSG-MGEVAIIPDLRRALANDDLAALAAE-YPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeec-cccccchHHHhhhhhhHHHHHHHhh-CCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe
Confidence 6666678888877776 445444444443 355555444 34453333333322324 4556666667789999999
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCC-----CHHHHHHHh-cCCCeEEEeccCc
Q 018253 160 INPYYG-KTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDI-----PPRVIHTMA-QSPNLAGVKECVG 220 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~l-----s~e~l~~La-~~pnivGiK~ss~ 220 (359)
.|..-. .++...+..-|+...+. +||+++.-+...+..+ .+-.+..++ ++|++.=|=--.|
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecC
Confidence 988654 56666677777777776 7999987554443322 345677777 6887554443333
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=85.23 E-value=2.4 Score=40.81 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHhhCCCcEEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCC
Q 018253 115 MLIGHTVNCFGASVKVI-GNTGSN-STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192 (359)
Q Consensus 115 ~li~~~v~~~~grvpVi-agvg~~-st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~ 192 (359)
++++.+.+. .++||+ +..|+- +.+++.. +.++|+|++++..=.+...+++...+.|.+.... ||.|
T Consensus 187 elLkei~~~--~~iPVV~fAiGGI~TPedAa~----~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~- 254 (287)
T TIGR00343 187 ELLLEVLKL--GKLPVVNFAAGGVATPADAAL----MMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNP- 254 (287)
T ss_pred HHHHHHHHh--CCCCEEEeccCCCCCHHHHHH----HHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCH-
Confidence 445555553 479998 567766 4444433 3458999999998877667777777766665544 7655
Q ss_pred CCCCCCCHHHHHHHhc-C-CCeEEEeccC
Q 018253 193 RTGQDIPPRVIHTMAQ-S-PNLAGVKECV 219 (359)
Q Consensus 193 ~tg~~ls~e~l~~La~-~-pnivGiK~ss 219 (359)
+.+++.++ + .-.+|+-.+.
T Consensus 255 --------~~~~e~s~~~~~~m~g~~~~~ 275 (287)
T TIGR00343 255 --------EKLAEVSKDLGEAMKGISISS 275 (287)
T ss_pred --------HHHHHHHccccccCCCCcccc
Confidence 46666663 3 3456665443
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=85.07 E-value=16 Score=38.41 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred HHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEecC------CCCHHHHHHHHHHHHh
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 151 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagvg------~~st~~ai~la~~a~~ 151 (359)
-++.++++|++.+-+.-++++. ..+|.+|-.+.++.+++.+.. ...|.++.- ..+.+-.+++++.+.+
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~ 169 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAE 169 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHh
Confidence 4566788999999999888864 457788888888877776542 234555333 2456778999999999
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
+|+|.+.+ +=.....+++++.+.++.+.+. .||-++
T Consensus 170 ~Gad~i~l-~DTvG~~~P~~v~~li~~l~~~~~v~i~~H 207 (524)
T PRK12344 170 AGADWVVL-CDTNGGTLPHEVAEIVAEVRAAPGVPLGIH 207 (524)
T ss_pred CCCCeEEE-ccCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99998764 3345566788888888888776 465544
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=14 Score=35.15 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
++++.++.+.++|++|+++. ....+|.-++.+.+++.|.+-+.+
T Consensus 105 G~e~f~~~~~~aGvdGviip------------------------------------DLp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP------------------------------------DLPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC------------------------------------CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 56666777777777777765 234566777777777777777777
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCeEEEe--CCCCCCC--CCC---HHHHHHHhc---CCCeEEEeccCc
Q 018253 160 INPYYGKTSLEGLISHFDSVLSMGPTIIYN--VPSRTGQ--DIP---PRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn--~P~~tg~--~ls---~e~l~~La~---~pnivGiK~ss~ 220 (359)
++|.. +++.+. .+++..+=+||- .-+.||. .++ .+.+.++.+ .|-++|.-.++.
T Consensus 149 vap~t---~~eri~----~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~ 212 (258)
T PRK13111 149 VAPTT---TDERLK----KIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTP 212 (258)
T ss_pred eCCCC---CHHHHH----HHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCH
Confidence 76665 333322 244333323332 2223444 222 234555543 466666666544
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=85.01 E-value=13 Score=39.15 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCCC-cEEEEec------CCCCHHHHHHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGAS-VKVIGNT------GSNSTREAIHATEQG 149 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~gr-vpViagv------g~~st~~ai~la~~a 149 (359)
.+.++.+++.|.+.+-+..++++.+ .+|.+|-.+.+..+++.+... ..|..+. +..+.+..++.++.+
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a 163 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATA 163 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHH
Confidence 3456677788999999999998654 568888888877777765422 3343322 246789999999999
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
.++|||.+.+. =.....+++++.+.++.+.+..|
T Consensus 164 ~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 164 QQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 99999987765 34445678889999999887643
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=84.96 E-value=25 Score=31.88 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-----------ecCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-----------NTGSNSTREAIHA 145 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-----------gvg~~st~~ai~l 145 (359)
|.+...+.++.+++.+++|+++.+... +.+.... ..+ .++||+. .++....+.+...
T Consensus 40 ~~~~~~~~~~~l~~~~vdgiii~~~~~-----~~~~~~~----~~~---~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~ 107 (268)
T cd01575 40 SPEREEELLRTLLSRRPAGLILTGLEH-----TERTRQL----LRA---AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAM 107 (268)
T ss_pred CchhHHHHHHHHHHcCCCEEEEeCCCC-----CHHHHHH----HHh---cCCCEEEEecCCCCCCCCeEEeCcHHHHHHH
Confidence 446677889999999999999987553 2222122 111 1355543 2344456667777
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC-eEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEEeccCc
Q 018253 146 TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GP-TIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECVG 220 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~P-iiiYn~P~~tg~~ls~e~l~~La-~~pnivGiK~ss~ 220 (359)
+++..+.|-.-+.++.+........+-.+-|++..+. .+ ..++..+......-.-+.+.++. ++|.+.||=-.+.
T Consensus 108 ~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (268)
T cd01575 108 ARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCSND 186 (268)
T ss_pred HHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 8888888877776654433212223344445555443 22 12222221111111235566765 5677666664443
|
This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=84.91 E-value=6.5 Score=38.11 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC-------HHHHHHHHHHHHHhhCCCcEEEEecCCCC-HHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-------WDEHIMLIGHTVNCFGASVKVIGNTGSNS-TREAIHA 145 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT-------~~Er~~li~~~v~~~~grvpViagvg~~s-t~~ai~l 145 (359)
+..+.+....+++.+.+.|++.|-+.+.+.+..... .....+.++.+.+.+ ++||+++ |... .++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~-Ggi~t~~~---- 295 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAV-GGIRDPEV---- 295 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEe-CCCCCHHH----
Confidence 447889999999999999999998888776654331 233456666666665 5888764 4444 433
Q ss_pred HHHHHhC-CCCEEEEcCCCCCCCC
Q 018253 146 TEQGFAV-GMHAALHINPYYGKTS 168 (359)
Q Consensus 146 a~~a~~~-Gadav~v~pP~y~~~s 168 (359)
++.+.+. |+|.|++.-|.+..|.
T Consensus 296 a~~~l~~g~aD~V~igR~~ladP~ 319 (327)
T cd02803 296 AEEILAEGKADLVALGRALLADPD 319 (327)
T ss_pred HHHHHHCCCCCeeeecHHHHhCcc
Confidence 3334445 7999999988876553
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=84.84 E-value=6.6 Score=37.37 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=53.6
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEE---EccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMI---VGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~---v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
...++||-+.+ +.++++.+. +.|- +| ..|+||+-..+. ++-.+.++.+.+.+ ++||++|.|=.+.
T Consensus 143 ~I~lv~p~t~~-----~Ri~~i~~~--a~gF--iY~vs~~GvTG~~~~~~-~~l~~~i~~ik~~~--~~Pv~vGFGI~~~ 210 (259)
T PF00290_consen 143 LIPLVAPTTPE-----ERIKKIAKQ--ASGF--IYLVSRMGVTGSRTELP-DELKEFIKRIKKHT--DLPVAVGFGISTP 210 (259)
T ss_dssp EEEEEETTS-H-----HHHHHHHHH---SSE--EEEESSSSSSSTTSSCH-HHHHHHHHHHHHTT--SS-EEEESSS-SH
T ss_pred EEEEECCCCCH-----HHHHHHHHh--CCcE--EEeeccCCCCCCcccch-HHHHHHHHHHHhhc--CcceEEecCCCCH
Confidence 45667776543 344444331 2332 33 378999998875 56778888888776 7899999996555
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+++-++ . .|||++++-.-.
T Consensus 211 e~~~~~----~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 211 EQAKKL----A-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHH----H-TTSSEEEESHHH
T ss_pred HHHHHH----H-ccCCEEEECHHH
Confidence 544333 3 789999997543
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=84.77 E-value=11 Score=34.30 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=64.6
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+++.|++.+++..+...-+. .++-.++++.+.+.. ++++++++. +.++ ++.+.++|+|.+.+.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g--~~~iiv~v~--t~~e----a~~a~~~G~d~i~~~~ 151 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEY--NCLLMADIS--TLEE----ALNAAKLGFDIIGTTL 151 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHh--CCeEEEECC--CHHH----HHHHHHcCCCEEEccC
Confidence 45788999999998877654432111 024456666666543 688888764 3444 4677889999875532
Q ss_pred CCCCCC---CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 162 PYYGKT---SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 162 P~y~~~---s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
--+... +...-.++.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 152 ~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-------~GGI~~~~~~~~~l~~ 198 (219)
T cd04729 152 SGYTEETAKTEDPDFELLKELRKALGIPVIA-------EGRINSPEQAAKALEL 198 (219)
T ss_pred ccccccccCCCCCCHHHHHHHHHhcCCCEEE-------eCCCCCHHHHHHHHHC
Confidence 111110 111124566666654 46553 2245 57788887653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.72 E-value=36 Score=32.19 Aligned_cols=159 Identities=16% Similarity=0.039 Sum_probs=85.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++...+.+.|+++|.++--.--| .=+ .+.++.+.+.+ ++||+. -..-+..- ++..+.++|||++.++
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f-~g~----~~~l~~v~~~v--~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFF-QGS----LEYLRAARAAV--SLPVLR--KDFIIDPY--QIYEARAAGADAILLI 140 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccC-CCC----HHHHHHHHHhc--CCCEEe--eeecCCHH--HHHHHHHcCCCEEEEE
Confidence 3466667778999999874322111 111 34455555544 689996 22222222 6888889999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEeccC-----chh----hHhhhhC
Q 018253 161 NPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECV-----GND----RVEHYTG 229 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ss-----~d~----~l~~~~~ 229 (359)
.-.. +.+.+.+.++...+. +.+++- . -+.+.+.+..+ -+.++|+-.-+ .|. ++.....
T Consensus 141 ~~~l---~~~~l~~li~~a~~lGl~~lve-v-------h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p 209 (260)
T PRK00278 141 VAAL---DDEQLKELLDYAHSLGLDVLVE-V-------HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIP 209 (260)
T ss_pred eccC---CHHHHHHHHHHHHHcCCeEEEE-e-------CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCC
Confidence 6664 345666666655544 333322 1 12334444444 46788874210 111 2222222
Q ss_pred CceEEE--ecCC-chhhhhhhhcCCceeecccccc
Q 018253 230 NGIVVW--SGND-DQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 230 ~~~~v~--~G~d-~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.+..++ +|-. ..-+...+.+|++|++-|.+-.
T Consensus 210 ~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 210 SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 222223 3432 1222334678999998776644
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.60 E-value=34 Score=32.92 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhC---CCCEEEE--cCCCCC-----CCCHHHHHHHHH
Q 018253 109 SWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAV---GMHAALH--INPYYG-----KTSLEGLISHFD 177 (359)
Q Consensus 109 T~~Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~---Gadav~v--~pP~y~-----~~s~~~l~~yf~ 177 (359)
..++..+.++...+.. ....||++++.+. .++-++.++..++. |+|++-+ .-|... ..+.+.+.+..+
T Consensus 72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~ 150 (294)
T cd04741 72 GLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLT 150 (294)
T ss_pred CHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHH
Confidence 3555555555433322 1357999999988 99999999998886 6998865 224321 124677888888
Q ss_pred HHHhc--CCeEEEeCC
Q 018253 178 SVLSM--GPTIIYNVP 191 (359)
Q Consensus 178 ~Ia~a--~PiiiYn~P 191 (359)
+|.++ .||++==-|
T Consensus 151 ~v~~~~~iPv~vKl~p 166 (294)
T cd04741 151 AVKAAYSIPVGVKTPP 166 (294)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 88775 688876555
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=84.54 E-value=27 Score=35.99 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCC----CC--HHHHHHHHHHHHHhhCCCcEEE--------EecCCCCHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL----MS--WDEHIMLIGHTVNCFGASVKVI--------GNTGSNSTR 140 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~----LT--~~Er~~li~~~v~~~~grvpVi--------agvg~~st~ 140 (359)
.+..+....+++.|.+.|++-|=+.|..+ |.. ++ ..|+.+.+ .+... ++++. .|.....-+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggat-f~~~~~f~~e~p~e~l~~l---~~~~~-~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGAT-FDACLRFLNEDPWERLRKI---RKAVK-KTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcc-chhhhccCCCCHHHHHHHH---HHhCC-CCEEEEEeccccccccccCchh
Confidence 46778888999999999999998865432 322 44 44444444 33332 45553 344333333
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHh----cC-CCeEE
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMA----QS-PNLAG 214 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~-PiiiYn~P~~tg~~ls~e~l~~La----~~-pnivG 214 (359)
-..+..+.|.+.|+|.+-+..+.-...+-++.+++.++..-.. ..+-|-.- -..+++.+.+++ +. ...+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~ 172 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSIC 172 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4556778889999998877655332222233333222211111 22334321 124555555444 43 57899
Q ss_pred EeccCch
Q 018253 215 VKECVGN 221 (359)
Q Consensus 215 iK~ss~d 221 (359)
+||+.|-
T Consensus 173 i~Dt~G~ 179 (448)
T PRK12331 173 IKDMAGI 179 (448)
T ss_pred EcCCCCC
Confidence 9999985
|
|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=84.49 E-value=29 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf----~~Ia~a 182 (359)
++..+++++...++|||++++..|.....|+++..+|+ ++|.+.
T Consensus 179 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~ 226 (338)
T TIGR01464 179 TDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEE 226 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence 44466777777789999998888855556766655444 566553
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=84.48 E-value=8 Score=35.83 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+...++++.+.|+..+++.--.-|+...-.+. ++++.+.+.+ ++|||++=|-.+.++-.++. +.|++++++-
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~--~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~----~~G~~gvivg 220 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTMQGPDL--ELLKQLAEAV--NIPVIASGGVRSLEDLRELK----KAGIDGVIVG 220 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTSSS--H--HHHHHHHHHH--SSEEEEESS--SHHHHHHHH----HTTECEEEES
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCcCCCCH--HHHHHHHHHc--CCCEEEecCCCCHHHHHHHH----HCCCcEEEEe
Confidence 45667778889999999999999988887775 6677877777 68999987776788776665 7999999886
Q ss_pred CC
Q 018253 161 NP 162 (359)
Q Consensus 161 pP 162 (359)
.=
T Consensus 221 ~a 222 (229)
T PF00977_consen 221 SA 222 (229)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Probab=84.30 E-value=34 Score=33.26 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHH----HHHHHhc----C-C-eEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISH----FDSVLSM----G-P-TIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~y----f~~Ia~a----~-P-iiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++..+++++...++|||++++.-|.....|++...+| +++|.+. . . .++|.. . |. ...+..+.+
T Consensus 176 t~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g--~~---~~~~~~~~~ 249 (335)
T cd00717 176 TDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-K--GA---GGLLEDLAQ 249 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-C--CC---HHHHHHHHh
Confidence 4556788888888999999988885555676665544 4666654 2 1 234432 2 22 256777777
Q ss_pred CC-CeEEEeccCchh-hHhhhhCCceEEEecC
Q 018253 209 SP-NLAGVKECVGND-RVEHYTGNGIVVWSGN 238 (359)
Q Consensus 209 ~p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~ 238 (359)
.+ ++.++=.. .|. ..++..+++..+..+.
T Consensus 250 ~~~~~~s~d~~-~dl~e~k~~~g~~~~i~Gni 280 (335)
T cd00717 250 LGADVVGLDWR-VDLDEARKRLGPKVALQGNL 280 (335)
T ss_pred cCCCEEEeCCC-CCHHHHHHHhCCCeEEEeCC
Confidence 54 55444322 232 3444444445444333
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=84.14 E-value=44 Score=32.64 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcE-EEEecC---CCCHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK-VIGNTG---SNSTREAIHATE 147 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvp-Viagvg---~~st~~ai~la~ 147 (359)
.+.++.+.+.+.++++.+. |+..+++.| ||-..++.+.-.++++.+.+. + .+. +=.++. .+...-+-++++
T Consensus 116 ~~~l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i-~-~v~~iri~Tr~~v~~p~rit~ell~ 191 (321)
T TIGR03822 116 LGVLSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI-D-HVKIVRFHTRVPVADPARVTPALIA 191 (321)
T ss_pred cCcCCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC-C-CccEEEEeCCCcccChhhcCHHHHH
Confidence 3567889999999998764 899888777 899999888888888887652 2 222 122321 122333446666
Q ss_pred HHHhCCCCEEEEcCCCC-CC-CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 148 QGFAVGMHAALHINPYY-GK-TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y-~~-~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
...+.|.. +.+..-.. .. .+ ++..+-.+.+.++ .++.... .-..|++-+.+.+.+|.
T Consensus 192 ~L~~~g~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~-vLl~gvNd~~~~l~~l~ 251 (321)
T TIGR03822 192 ALKTSGKT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQS-VLLRGVNDDPETLAALM 251 (321)
T ss_pred HHHHcCCc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEe-eEeCCCCCCHHHHHHHH
Confidence 77777743 32221111 11 12 4455555555555 3443332 22347777777777665
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=44 Score=34.92 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--C-----CcEEEEecCCCCHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--A-----SVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--g-----rvpViagvg~~st~~ai~la~ 147 (359)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|+..+ +.+.+... + -.+.+.+.+....+ -++.+.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEv-G----~Pa~s~~e~e~i-~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~-dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEV-G----FPGSSEEEFEAV-KTIAKTVGNEVDEETGYVPVICGIARCKKR-DIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-e----CCCCCHHHHHHH-HHHHHhcccccccccccceEEeeecccCHh-hHHHHH
Confidence 488899999999999999997665 3 377888887663 44444321 1 13666666654433 344444
Q ss_pred HH-HhCCCCEEEEcCCCC-------CCCCHHHHHHHHHHHHhc----C-CeEEEeCCCCCCCCCCHHHHHHHh----c-C
Q 018253 148 QG-FAVGMHAALHINPYY-------GKTSLEGLISHFDSVLSM----G-PTIIYNVPSRTGQDIPPRVIHTMA----Q-S 209 (359)
Q Consensus 148 ~a-~~~Gadav~v~pP~y-------~~~s~~~l~~yf~~Ia~a----~-PiiiYn~P~~tg~~ls~e~l~~La----~-~ 209 (359)
.+ ...|++.+.+..|.- .+.+.++.++-+.+..+. . ..+.+..+..+ .-+++.+.+++ + -
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~--Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG--RSDKEFLCKILGEAIKAG 252 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc--ccCHHHHHHHHHHHHhcC
Confidence 43 334777787766632 234566665555554432 2 23556555432 34566665554 3 3
Q ss_pred CCeEEEeccCch
Q 018253 210 PNLAGVKECVGN 221 (359)
Q Consensus 210 pnivGiK~ss~d 221 (359)
...+.++|+.|-
T Consensus 253 ad~I~l~DTvG~ 264 (503)
T PLN03228 253 ATSVGIADTVGI 264 (503)
T ss_pred CCEEEEecCCCC
Confidence 677889999885
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=20 Score=34.14 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIV 98 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v 98 (359)
++++.++.+.++|++|+++
T Consensus 107 G~e~F~~~~~~aGvdgvii 125 (263)
T CHL00200 107 GINKFIKKISQAGVKGLII 125 (263)
T ss_pred CHHHHHHHHHHcCCeEEEe
Confidence 4455555555666666553
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=83.99 E-value=9.1 Score=35.98 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v 159 (359)
...+++.+.+.|++.+.+.+-+.++..=.. ..++++.+.+.+ ++|||+.=|-.+.++..++.+ .| +|++++
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~--~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~----~g~~dgv~~ 228 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGY--DLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFT----KGKADAALA 228 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCcceeeE
Confidence 356777788999999999665554432111 134566666655 589998666666777665543 46 999988
Q ss_pred cCCCCC-CCCHHHHHHHHH
Q 018253 160 INPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~ 177 (359)
..=.|. ..+.+++.++.+
T Consensus 229 g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 229 ASVFHYREITIGEVKEYLA 247 (254)
T ss_pred hHHHhCCCCCHHHHHHHHH
Confidence 776664 567777766655
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=12 Score=35.47 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=85.9
Q ss_pred eeecCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 65 AIKTPYLPDG---RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 65 al~TPF~~dg---~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+++=|-..|. +-+++.+.+-++.+.+.|++||+++.-|-++ .+..+--++|++. + +..|+..+=.-..+.+
T Consensus 56 vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg-~vD~~~~~~Li~~----a-~~~~vTFHRAfD~~~d 129 (248)
T PRK11572 56 PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDG-HVDMPRMRKIMAA----A-GPLAVTFHRAFDMCAN 129 (248)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHH----h-cCCceEEechhhccCC
Confidence 4555543342 3566778888899999999999987777655 3555545555544 3 3578888755444556
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
..+..+...++|++.|+-. -..++..+-.+..+++.+. ...+| .| |-.+.++-+.+|.
T Consensus 130 ~~~al~~l~~lG~~rILTS---Gg~~~a~~g~~~L~~lv~~a~~~~I--m~---GgGV~~~Nv~~l~ 188 (248)
T PRK11572 130 PLNALKQLADLGVARILTS---GQQQDAEQGLSLIMELIAASDGPII--MA---GAGVRLSNLHKFL 188 (248)
T ss_pred HHHHHHHHHHcCCCEEECC---CCCCCHHHHHHHHHHHHHhcCCCEE--Ee---CCCCCHHHHHHHH
Confidence 6677777888999999875 4445566666777777664 22222 23 5568888888885
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=83.95 E-value=13 Score=33.83 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
+-.-..-+.++-+++.|++-+.+=+|.=+-+ .|.+| +++...+. + ..+|+-+++ +|-++.|.++|+|
T Consensus 48 V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~---li~~i~~~--~-~l~MADist------~ee~~~A~~~G~D 114 (192)
T PF04131_consen 48 VYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEE---LIREIKEK--Y-QLVMADIST------LEEAINAAELGFD 114 (192)
T ss_dssp --BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHH---HHHHHHHC--T-SEEEEE-SS------HHHHHHHHHTT-S
T ss_pred eEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHH---HHHHHHHh--C-cEEeeecCC------HHHHHHHHHcCCC
Confidence 3333446778889999999999999888877 55554 44444443 2 789998874 4556778889999
Q ss_pred EEEEcCCCCCCCCH--HHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc---CCCeEEEecc
Q 018253 156 AALHINPYYGKTSL--EGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKEC 218 (359)
Q Consensus 156 av~v~pP~y~~~s~--~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~---~pnivGiK~s 218 (359)
.+--+---|...+. .-=+++.+++.+. .|++.= |.--+|+...+..+ +--|||=..+
T Consensus 115 ~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaE------Gri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 115 IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAE------GRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEE------SS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeec------CCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 99888665644331 1124455555554 464432 44456666666543 3345554443
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=83.94 E-value=10 Score=35.90 Aligned_cols=119 Identities=12% Similarity=0.257 Sum_probs=65.3
Q ss_pred CceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccCc--CCCCHHHHHHHHHHHHHhhCC--CcEEEEec
Q 018253 60 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG--QLMSWDEHIMLIGHTVNCFGA--SVKVIGNT 134 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstGE~--~~LT~~Er~~li~~~v~~~~g--rvpViagv 134 (359)
.||+-..+=-|.+.|. +|++...+++..+++.|++-|=++|..... ...+.+|-.+-+..+++.... ++|| .+
T Consensus 4 mgIlN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SI 81 (257)
T cd00739 4 MGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SV 81 (257)
T ss_pred EEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EE
Confidence 4555544445766665 899999999999999999999988633321 233444433333333444433 4554 45
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
-+.+.+. ++.|.+.|++-+--+. ....+ +++ +.-+++. .|+++-+.
T Consensus 82 DT~~~~v----~e~al~~G~~iINdis--g~~~~-~~~---~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 82 DTFRAEV----ARAALEAGADIINDVS--GGSDD-PAM---LEVAAEYGAPLVLMHM 128 (257)
T ss_pred eCCCHHH----HHHHHHhCCCEEEeCC--CCCCC-hHH---HHHHHHcCCCEEEECC
Confidence 4444433 3333444777554332 11112 233 3444443 67776543
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.86 E-value=43 Score=32.38 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCHHHHHHHHHHHHhcCCe
Q 018253 108 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM--HAALHINPYYGKTSLEGLISHFDSVLSMGPT 185 (359)
Q Consensus 108 LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga--dav~v~pP~y~~~s~~~l~~yf~~Ia~a~Pi 185 (359)
+|..|++-+-..+..+..-.+||+++++.. + ...++.+.+++.|+ +.+++.-+-.. .+ .+|.+++++..=.
T Consensus 133 it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~-~g~e~l~il~e~Gvd~~rvvi~H~d~~-~d----~~~~~~l~~~G~~ 205 (292)
T PRK09875 133 ITPLEEKVFIAAALAHNQTGRPISTHTSFS-T-MGLEQLALLQAHGVDLSRVTVGHCDLK-DN----LDNILKMIDLGAY 205 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-c-chHHHHHHHHHcCcCcceEEEeCCCCC-CC----HHHHHHHHHcCCE
Confidence 666666444433333344456666665432 1 45555555666666 45555433311 22 3455556655444
Q ss_pred EEEeC
Q 018253 186 IIYNV 190 (359)
Q Consensus 186 iiYn~ 190 (359)
+=|+.
T Consensus 206 l~fD~ 210 (292)
T PRK09875 206 VQFDT 210 (292)
T ss_pred EEecc
Confidence 44543
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=83.83 E-value=21 Score=33.44 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=68.0
Q ss_pred HCCCCEEEEccCccC-------cCCCCHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 90 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 90 ~~Gv~Gl~v~GstGE-------~~~LT~~Er~~li~~~v~~~~grvpViag--vg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.|.+.+++.|+..= .-.+|.+|....++.+...+ .+||++- .|..+..++.+.+++..+.|++++.+-
T Consensus 27 ~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iE 104 (243)
T cd00377 27 RAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIE 104 (243)
T ss_pred HcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 469999999885432 34678899999998888766 6799884 344477899999999999999999992
Q ss_pred CCCC----------CCCCHHHHHHHHHHHHhc
Q 018253 161 NPYY----------GKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 161 pP~y----------~~~s~~~l~~yf~~Ia~a 182 (359)
--.+ ...+.++..+-.+.+.++
T Consensus 105 D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a 136 (243)
T cd00377 105 DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDA 136 (243)
T ss_pred cCCCCccccCCCCCeecCHHHHHHHHHHHHHH
Confidence 2111 224778888888877764
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=83.62 E-value=3.6 Score=40.33 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCC-CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~L-T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++....++.|+|+|++-|.-+=++.- +.+--..|+..+.+.++ +|||+ .|+-...+.+ .+|..+|||+|++-+
T Consensus 147 ~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPVia-AGGI~dg~~i---aaal~lGA~gV~~GT 220 (330)
T PF03060_consen 147 REARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIA-AGGIADGRGI---AAALALGADGVQMGT 220 (330)
T ss_dssp HHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEE-ESS--SHHHH---HHHHHCT-SEEEESH
T ss_pred HHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEE-ecCcCCHHHH---HHHHHcCCCEeecCC
Confidence 45667789999999998765444444 22246777777777764 89998 3333334333 366779999999998
Q ss_pred CCCCCCCHHHHHHHHHHH-Hhc--CCeEEEeCCC-CCCCCCCHHHHHHHhc
Q 018253 162 PYYGKTSLEGLISHFDSV-LSM--GPTIIYNVPS-RTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~I-a~a--~PiiiYn~P~-~tg~~ls~e~l~~La~ 208 (359)
.+.... +..+-+.|++. .++ ..+++...+. +....+..++..++.+
T Consensus 221 rFl~t~-Es~~~~~~K~~l~~a~~~dtv~t~~~~G~~~R~l~n~~~~~~~~ 270 (330)
T PF03060_consen 221 RFLATE-ESGASDAYKQALVDATEEDTVLTRSFSGRPARVLRNPFTEEWEE 270 (330)
T ss_dssp HHHTST-TS-S-HHHHHHHHHGGTT-EEEESTTTTS-EEEE-SHHHHHHHH
T ss_pred eEEecc-cccChHHHHHHHHhCCCCCEEEEeecccchhhhhCcHHHHHHHh
Confidence 776432 33344445544 344 4677666542 3334456666666653
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=83.62 E-value=45 Score=32.62 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--C--C-CCH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--G--S-NST 139 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gs----------tGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g--~-~st 139 (359)
.-|.+.+.+.++.+.+.|+++|=++.+ .|-...-..+.-.++++.+.+.++ +||.+=+ + . .+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~--~PVsvKiR~g~~~~~~~ 140 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVN--IPVTVKHRIGIDPLDSY 140 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC--CCeEEEEecCCCCcchH
Confidence 457788999998888889998866543 244444556666778888777663 5666533 2 2 245
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCC
Q 018253 140 REAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP 162 (359)
++++++++.+++.|+|++-+.+=
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 78999999999999999877654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.60 E-value=19 Score=35.91 Aligned_cols=100 Identities=8% Similarity=0.070 Sum_probs=67.5
Q ss_pred CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC--
Q 018253 91 NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-- 166 (359)
Q Consensus 91 ~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~-- 166 (359)
.+++-|+++| |+...|+.++-.++++.+.+..+- ...+-+-+.-.+ -+-+..+..+++|++.+.+-.-.+..
T Consensus 57 ~~v~ti~~GG--GtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~--l~~e~l~~Lk~~Gv~risiGvqS~~~~~ 132 (378)
T PRK05660 57 REVHSIFIGG--GTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGT--VEADRFVGYQRAGVNRISIGVQSFSEEK 132 (378)
T ss_pred CceeEEEeCC--CccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCc--CCHHHHHHHHHcCCCEEEeccCcCCHHH
Confidence 4688888877 678899999999999999886532 222322222112 23377777888999999988765532
Q ss_pred -------CCHHHHHHHHHHHHhc-C-Ce---EEEeCCCCC
Q 018253 167 -------TSLEGLISHFDSVLSM-G-PT---IIYNVPSRT 194 (359)
Q Consensus 167 -------~s~~~l~~yf~~Ia~a-~-Pi---iiYn~P~~t 194 (359)
.+.+++.+-++.+.++ . ++ ++|..|..|
T Consensus 133 L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 133 LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 4667777777777665 3 33 678888643
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=23 Score=37.75 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.+-+.++++.+.+.|++.|.+.-|.|= |++++-.++++.+.+.. ++||=+++ +++..-++..+-.|.++|||.
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lk~~~--~~pi~~H~-Hnt~GlA~An~laAieAGa~~ 226 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGL---LKPYAAYELVSRIKKRV--DVPLHLHC-HATTGLSTATLLKAIEAGIDG 226 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCchHHHHHHHHHHcCCCE
Confidence 6888999999999999999999999995 89999999999998877 47876665 567888999999999999998
Q ss_pred EEEcCC
Q 018253 157 ALHINP 162 (359)
Q Consensus 157 v~v~pP 162 (359)
+=..--
T Consensus 227 vD~ai~ 232 (593)
T PRK14040 227 VDTAIS 232 (593)
T ss_pred EEeccc
Confidence 865543
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=25 Score=34.64 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHH----CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 78 LEAYDDLVNMQIV----NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 78 ~~~l~~li~~li~----~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
.+++.+-++...+ .+++.|+++| |+...|+.++..++++.+.+.......+-+-+...+. +-+..+..+++|
T Consensus 33 ~~~L~~Ei~~~~~~~~~~~v~~iyfGG--GTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~G 108 (350)
T PRK08446 33 MQALCLDLKFELEQFTDEKIESVFIGG--GTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSA--TKAWLKGMKNLG 108 (350)
T ss_pred HHHHHHHHHHHHhhccCCceeEEEECC--CccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCC--CHHHHHHHHHcC
Confidence 3444444443332 2677777766 5577788888888888887764444444333322222 235666667778
Q ss_pred CCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC-e---EEEeCCCC
Q 018253 154 MHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP-T---IIYNVPSR 193 (359)
Q Consensus 154 adav~v~pP~y~--------~-~s~~~l~~yf~~Ia~a-~P-i---iiYn~P~~ 193 (359)
++.+.+-.-.+. + .+.+++.+-++.+.++ .+ | ++|..|.-
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 888877665442 2 4566777777666655 23 3 67777753
|
|
| >PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A | Back alignment and domain information |
|---|
Probab=83.46 E-value=6.4 Score=35.95 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 113 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 113 r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
-.+-++.+.+..+-.+-++ +-...+.++.++.++.+.+.|+|++++.|+.. +.+...++.+.++ .|++.+|.+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCceEEEEecc
Confidence 3344444455554443333 67778899999999999999999999886654 3344666777777 899999987
|
... |
| >cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=83.41 E-value=4.5 Score=36.39 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-----------cCCCCHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----------TGSNSTREAIH 144 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-----------vg~~st~~ai~ 144 (359)
-|.+.....++.++..|++|+++.+...+.. + ++.+. ..++||+.- ++.........
T Consensus 39 ~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~------~---~~~~~---~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~ 106 (264)
T cd06267 39 EDPEKEREALELLLSRRVDGIILAPSRLDDE------L---LEELA---ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYL 106 (264)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEecCCcchH------H---HHHHH---HcCCCEEEecccccCCCCCEEeeccHHHHHH
Confidence 4467888899999999999999988775421 1 22221 224565442 23334455555
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-Ce-EEEeCCCCCCCCCCHHHHHHHh-cCCCeEEEecc
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PT-IIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKEC 218 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-Pi-iiYn~P~~tg~~ls~e~l~~La-~~pnivGiK~s 218 (359)
.+++..+.|..-+.++.+.-.......-.+-|++..+. . ++ ..+..+......-....+.++. ++|++.++=-.
T Consensus 107 ~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 107 AVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc
Confidence 66888888887777765433322333334444444432 2 22 1111111112222234555555 67776666644
|
Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.31 E-value=8.2 Score=40.27 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~ 150 (359)
.++.|.+-+.++++...+.|++.|.+.-|.|= +++++-.++++.+.+.+++ ++||=++ ++++..-++.-+-.|.
T Consensus 233 a~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~---~tP~~v~~lV~~l~~~~~~~~~i~I~~H-~HND~GlAvANslaAi 308 (503)
T PLN03228 233 GGRSDKEFLCKILGEAIKAGATSVGIADTVGI---NMPHEFGELVTYVKANTPGIDDIVFSVH-CHNDLGLATANTIAGI 308 (503)
T ss_pred ccccCHHHHHHHHHHHHhcCCCEEEEecCCCC---CCHHHHHHHHHHHHHHhccccCceeEec-ccCCcChHHHHHHHHH
Confidence 46799999999999999999999999999994 7899999999988887653 3555444 4678888999999999
Q ss_pred hCCCCEEEEcCCCCC----CCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 151 AVGMHAALHINPYYG----KTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 151 ~~Gadav~v~pP~y~----~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
++||+.+-..---.. ..+-++++.+.+..- ..+++.. .++ +..+.+.++++ ...+.|+.
T Consensus 309 ~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~---~~~~~g~--~t~--iDl~~L~~ls~~V~~~~g~~ 372 (503)
T PLN03228 309 CAGARQVEVTINGIGERSGNASLEEVVMALKCRG---AYLMNGV--YTG--IDTRQIMATSKMVQEYTGMY 372 (503)
T ss_pred HhCCCEEEEeccccccccCCccHHHHHHHHHhcc---cccccCC--CCC--cCHHHHHHHHHHHHHHhCCC
Confidence 999999976533222 244566666554321 2222222 234 44556666553 33344443
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=6.2 Score=36.51 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.3
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+.+-++.. +. .-.++++.+++.+ .+||+++=|-.+.++..+ +.+.|++++++..
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g-~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~----~~~~Ga~gv~vgs 223 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EG-VNTEPVKELVDSV--DIPVIASGGVTTLDDLRA----LKEAGAAGVVVGS 223 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHH----HHHcCCCEEEEEH
Confidence 44555556899999999887544332 21 2344566666665 589998776666777654 3558999999987
Q ss_pred CCCCC-CCHHHHHHH
Q 018253 162 PYYGK-TSLEGLISH 175 (359)
Q Consensus 162 P~y~~-~s~~~l~~y 175 (359)
-.|.. .+-+++..+
T Consensus 224 a~~~~~~~~~~~~~~ 238 (241)
T PRK13585 224 ALYKGKFTLEEAIEA 238 (241)
T ss_pred HHhcCCcCHHHHHHH
Confidence 76644 344554443
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.19 E-value=7.4 Score=39.29 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=70.7
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
.|.+.-..+|. =+.+.+.++.+.|.+.|+|.|.+=-.+| .||+.+--++++...+..+ +||-+++-+. +
T Consensus 142 q~~i~YT~sPv-----Ht~e~yv~~akel~~~g~DSIciKDmaG---lltP~~ayelVk~iK~~~~--~pv~lHtH~T-s 210 (472)
T COG5016 142 QGTISYTTSPV-----HTLEYYVELAKELLEMGVDSICIKDMAG---LLTPYEAYELVKAIKKELP--VPVELHTHAT-S 210 (472)
T ss_pred EEEEEeccCCc-----ccHHHHHHHHHHHHHcCCCEEEeecccc---cCChHHHHHHHHHHHHhcC--CeeEEecccc-c
Confidence 44555556664 5788999999999999999999988888 5899999999999998885 8998887542 2
Q ss_pred HHHHHHHHHHHhCCCCEE-EEcCCCC
Q 018253 140 REAIHATEQGFAVGMHAA-LHINPYY 164 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav-~v~pP~y 164 (359)
--+..---.|.++|+|.+ ..+.|.-
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S 236 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLS 236 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhcccc
Confidence 333333445678999987 4444543
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=83.05 E-value=8.4 Score=40.08 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg~~st~~ai~la~~a~ 150 (359)
-++.|.+-+.++++...+.|++-|.++-|.|= +++++-.++++.+.+.++.. +++=++ .+++..-++.-+..|.
T Consensus 140 ~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H-~HND~GlAvANalaAv 215 (494)
T TIGR00973 140 AGRTEIPFLARIVEAAINAGATTINIPDTVGY---ALPAEYGNLIKGLRENVPNIDKAILSVH-CHNDLGLAVANSLAAV 215 (494)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhhccccCceEEEE-eCCCCChHHHHHHHHH
Confidence 45689999999999999999999999999995 78999999999998877653 444433 4678888999999999
Q ss_pred hCCCCEEEEcCCCC----CCCCHHHHHHHHHH
Q 018253 151 AVGMHAALHINPYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 151 ~~Gadav~v~pP~y----~~~s~~~l~~yf~~ 178 (359)
++||+.+-..-=-+ ...+-+++..+++.
T Consensus 216 ~aGa~~vd~tv~GlGERaGNa~le~vv~~L~~ 247 (494)
T TIGR00973 216 QNGARQVECTINGIGERAGNAALEEVVMALKV 247 (494)
T ss_pred HhCCCEEEEEeecccccccCccHHHHHHHHHH
Confidence 99999886654333 22455666666654
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=9.8 Score=39.53 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
..+-|.+-+.+.++...+.|++-|.++-|.| .+++.+-.++++.+.+..+ +|+=++ .+++..-++..+..|.++
T Consensus 137 ~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l~~~~~--v~l~~H-~HND~GlAvANalaAv~a 210 (488)
T PRK09389 137 ASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRLSELVK--GPVSIH-CHNDFGLAVANTLAALAA 210 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHHHhhcC--CeEEEE-ecCCccHHHHHHHHHHHc
Confidence 4678999999999999999999999999999 7899999999988877542 565444 467888999999999999
Q ss_pred CCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 153 GMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
||+.+-..---+. ..+-++++.+.+
T Consensus 211 Ga~~Vd~Ti~GiGERaGNa~lE~lv~~L~ 239 (488)
T PRK09389 211 GADQVHVTINGIGERAGNASLEEVVMALK 239 (488)
T ss_pred CCCEEEEEcccccccccCccHHHHHHHHH
Confidence 9999877654443 245677776664
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=83.02 E-value=21 Score=35.21 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++.+++++.+.+.|+|.+-+.- .+...+++++.++++.+.+.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3455555555555555555544332 23334455555555555543
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=10 Score=37.04 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc-EEEEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv-pViagvg~~st~~ai~la~~a~~ 151 (359)
...++.+.+.++++.+.+.|+..|.+.| ||- .| ..+-.++++.+.+. .+ + .+.+.+.+.... +.++...+
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~tG--GEP-ll-r~dl~~li~~i~~~-~~-l~~i~itTNG~ll~---~~~~~L~~ 112 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLTG--GEP-LV-RRGCDQLVARLGKL-PG-LEELSLTTNGSRLA---RFAAELAD 112 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEEC--cCC-Cc-cccHHHHHHHHHhC-CC-CceEEEEeChhHHH---HHHHHHHH
Confidence 4579999999999999999999999987 994 33 34556666665442 22 2 333334332232 56777888
Q ss_pred CCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPY-----YG----KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~-----y~----~~s~~~l~~yf~~Ia~a 182 (359)
+|.+.+-+.--. |. ..+-+.+.+-.+.+.+.
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~ 152 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA 152 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc
Confidence 999988665422 11 12345666666665554
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=82.95 E-value=7.5 Score=40.79 Aligned_cols=84 Identities=11% Similarity=-0.019 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
.+.|.+-+.+.++..++.|++-+.++-|.| .++++|-.++++.+.+.++ ..++=+ -.+++.--++..+-.|.++|
T Consensus 149 ~r~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~~l~~~~~-~~~i~v-H~HND~GlAvANslaAv~AG 223 (526)
T TIGR00977 149 YKANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITTKVKRSLK-QPQLGI-HAHNDSGTAVANSLLAVEAG 223 (526)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHHHHHHhCC-CCEEEE-EECCCCChHHHHHHHHHHhC
Confidence 378999999999999999999999999999 8899999999999988765 222333 35788899999999999999
Q ss_pred CCEEEEcCC
Q 018253 154 MHAALHINP 162 (359)
Q Consensus 154 adav~v~pP 162 (359)
|+.+-..-=
T Consensus 224 A~~Vd~Tin 232 (526)
T TIGR00977 224 ATMVQGTIN 232 (526)
T ss_pred CCEEEEecc
Confidence 999877643
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=82.95 E-value=7.2 Score=38.47 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
..+.+....++++|.+.|++-|-+ .|++.+.. ..-...+.+.+.+.+ ++||++ +|..+ .+.++.+.+.|
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~--~ipvi~-~G~i~----~~~a~~~l~~g 306 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAF--KGPLIA-AGGYD----AESAEAALADG 306 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cccchHHHHHHHHHc--CCCEEE-ECCCC----HHHHHHHHHcC
Confidence 467888899999999999999887 45444322 333455566666655 589876 56654 55566666655
Q ss_pred -CCEEEEcCCCCCCC
Q 018253 154 -MHAALHINPYYGKT 167 (359)
Q Consensus 154 -adav~v~pP~y~~~ 167 (359)
+|.|++.-|....|
T Consensus 307 ~~D~V~~gR~~ladP 321 (338)
T cd02933 307 KADLVAFGRPFIANP 321 (338)
T ss_pred CCCEEEeCHhhhhCc
Confidence 99999998877655
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=82.92 E-value=2 Score=41.25 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcC---------C-------CC----HHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQ---------L-------MS----WDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~---------~-------LT----~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
......+..+.+.|++||...-|++-.. . || ..--.+.+..+.+.+++++|||+.-|=.+
T Consensus 176 ~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s 255 (295)
T PF01180_consen 176 IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHS 255 (295)
T ss_dssp HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--S
T ss_pred hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCC
Confidence 3345555566689999999666554332 1 11 12345667777777877899998777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++++++.. +||++|.+..=.+
T Consensus 256 ~~da~e~l~----aGA~~Vqv~Sal~ 277 (295)
T PF01180_consen 256 GEDAIEFLM----AGASAVQVCSALI 277 (295)
T ss_dssp HHHHHHHHH----HTESEEEESHHHH
T ss_pred HHHHHHHHH----hCCCHheechhhh
Confidence 899988776 8999999986653
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=82.90 E-value=10 Score=35.14 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....+++++.+.|++.+++...++.... ...-.++++.+.+.+ ++||+++=|-.|.+++.++.+ .|+|++++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~----~G~~~v~i 99 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLR----AGADKVSI 99 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCceEEE
Confidence 3445667777889999999988875422 233456777777765 489998777667777655544 69999998
Q ss_pred cCCCCCC
Q 018253 160 INPYYGK 166 (359)
Q Consensus 160 ~pP~y~~ 166 (359)
-...+..
T Consensus 100 g~~~~~~ 106 (243)
T cd04731 100 NSAAVEN 106 (243)
T ss_pred CchhhhC
Confidence 8766643
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=82.87 E-value=6.7 Score=35.97 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v~ 160 (359)
..+++.+.+.|++.+++.+.+-+....-. -.++++.+.+.+ .+|||++=|-.+.++..++.+ .| +|++|+.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G~--d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~----~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSGP--NVEATRELAAAV--PIPVIASGGVSSLDDIKALKG----LGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCccEEEEE
Confidence 45667777889999999987765554432 245555666655 389999877777777655444 56 9999998
Q ss_pred CCCCC
Q 018253 161 NPYYG 165 (359)
Q Consensus 161 pP~y~ 165 (359)
.-.|.
T Consensus 221 ~a~~~ 225 (233)
T PRK00748 221 RALYE 225 (233)
T ss_pred HHHHc
Confidence 76553
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=82.86 E-value=55 Score=32.82 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-------------------------------c---------CcCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT-------------------------------G---------EGQLMSWDEHIML 116 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst-------------------------------G---------E~~~LT~~Er~~l 116 (359)
|.+..++++++-.++|..+|++.--+ + ....+|++.
T Consensus 144 dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---- 219 (367)
T TIGR02708 144 DDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRD---- 219 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHH----
Confidence 45677899999999999998873210 0 113466644
Q ss_pred HHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 117 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 117 i~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++.+++.+ ++||++ |++. .+-++.+.++|+|++.+..
T Consensus 220 i~~l~~~~--~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 220 IEEIAGYS--GLPVYVKGPQC------PEDADRALKAGASGIWVTN 257 (367)
T ss_pred HHHHHHhc--CCCEEEeCCCC------HHHHHHHHHcCcCEEEECC
Confidence 34444444 478888 5553 6677888899999998875
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=12 Score=37.12 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccC--ccCcCC-------------CCHHHHHHHHHHHHHhh-CCCcEEEE-ecCCCCHH
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGT--TGEGQL-------------MSWDEHIMLIGHTVNCF-GASVKVIG-NTGSNSTR 140 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~Gs--tGE~~~-------------LT~~Er~~li~~~v~~~-~grvpVia-gvg~~st~ 140 (359)
.+-+....+--.+.|+|=+=+.=+ .++|.. ++.+.-.+.++.+++.+ +|++||++ |=...+.+
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~ 295 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGED 295 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence 444555555555688886555433 334333 34445555666667754 78899766 44444788
Q ss_pred HHHHHHHHH---HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 141 EAIHATEQG---FAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 141 ~ai~la~~a---~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+.++.++.+ .+.|+.++.+--=.|..+++|. ++..++|.+
T Consensus 296 e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea-~~~~~~i~~ 338 (348)
T PRK09250 296 DLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEG-VKLLNAIQD 338 (348)
T ss_pred HHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHH-HHHHHHHHH
Confidence 999999999 9999999999877888776554 666676665
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=82.80 E-value=45 Score=33.40 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccC--------------------------------------------cCCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGE--------------------------------------------GQLMSWD 111 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE--------------------------------------------~~~LT~~ 111 (359)
=|.+-.++++++-.++|+++|++.--+-. -..+|++
T Consensus 134 ~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 134 KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 35677888888888889888887322200 1234554
Q ss_pred HHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 112 EHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 112 Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
. ++.+.+.. ++|||+ ||. +.++ ++.+.++|+|++.+..-
T Consensus 214 ~----i~~lr~~~--~~PvivKgV~--~~~d----A~~a~~~GvD~I~vsn~ 253 (364)
T PLN02535 214 D----IEWLRSIT--NLPILIKGVL--TRED----AIKAVEVGVAGIIVSNH 253 (364)
T ss_pred H----HHHHHhcc--CCCEEEecCC--CHHH----HHHHHhcCCCEEEEeCC
Confidence 3 23333333 578887 563 3444 67888899999988753
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.77 E-value=29 Score=31.91 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++.+.+.|++|+++.-+ | ..+..+|-.++++.+.+. .+.+|+.+++ . +.++.+.+.|.|.+-+.|
T Consensus 78 ~~~l~~~G~~~vii~~s--e-r~~~~~e~~~~v~~a~~~---Gl~~I~~v~~--~----~~~~~~~~~~~~~I~~~p 142 (223)
T PRK04302 78 PEAVKDAGAVGTLINHS--E-RRLTLADIEAVVERAKKL---GLESVVCVNN--P----ETSAAAAALGPDYVAVEP 142 (223)
T ss_pred HHHHHHcCCCEEEEecc--c-cccCHHHHHHHHHHHHHC---CCeEEEEcCC--H----HHHHHHhcCCCCEEEEeC
Confidence 55566677777665433 2 114555555555554442 2334444443 2 223334445555544444
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=82.67 E-value=21 Score=38.01 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+|- +++++-.++++.+.+..+ +||=+++ +++..-++.-+-.|.++||
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~---~~P~~~~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGL---LTPYAAYELVKALKEEVD--LPVQLHS-HCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCC---cCHHHHHHHHHHHHHhCC--CeEEEEE-cCCCCcHHHHHHHHHHhCC
Confidence 368999999999999999999999999996 789999999999988773 6776655 4677788888999999999
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|.+=..-
T Consensus 224 d~vD~ai 230 (592)
T PRK09282 224 DIIDTAI 230 (592)
T ss_pred CEEEeec
Confidence 9885443
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=82.62 E-value=52 Score=32.99 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC-----------------------------------------------cCCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE-----------------------------------------------GQLMS 109 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE-----------------------------------------------~~~LT 109 (359)
|.+..++++++-.++|+.+|++.--+-- -.++|
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 212 (367)
T PLN02493 133 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 212 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 6678888888888888888877211100 12455
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 110 WDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 110 ~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+++ ++...+.. ++|||+ ||.+ .+-++.|.++|+|+|.+..-
T Consensus 213 W~d----i~wlr~~~--~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 213 WKD----VQWLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred HHH----HHHHHhcc--CCCEEeecCCC------HHHHHHHHHcCCCEEEECCC
Confidence 544 22233333 579888 7752 56677888899999988753
|
|
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=40 Score=31.72 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC----CCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG----SNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg----~~st~~ai~la~~a 149 (359)
+.+.+...++++..++.| ++.+=+ |.. ...+...++++.+. .++++||+.-- ..+.++..+..+.+
T Consensus 91 ~~~~~~~~~ll~~~~~~~~~d~vDi-----El~-~~~~~~~~l~~~~~---~~~~kvI~S~H~f~~tP~~~~l~~~~~~~ 161 (253)
T PRK02412 91 ALSDEEYLALIKAVIKSGLPDYIDV-----ELF-SGKDVVKEMVAFAH---EHGVKVVLSYHDFEKTPPKEEIVERLRKM 161 (253)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEE-----ecc-CChHHHHHHHHHHH---HcCCEEEEeeCCCCCCcCHHHHHHHHHHH
Confidence 356666666666666666 555544 211 11222333333222 23456666432 23445666667777
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeC
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNV 190 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~ 190 (359)
++.|||-+=+....-...+-..+.....++.+. .|++.|+.
T Consensus 162 ~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~M 205 (253)
T PRK02412 162 ESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSM 205 (253)
T ss_pred HHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 777777664432222111222344444444321 46666664
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=82.58 E-value=27 Score=31.01 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=61.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..++.+.+.|++++.+-+.++ .++-.++++.+.+. .+++++- .+..+..+..+ +.+.|+|.+.+.|
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e~~~----~~~~~~d~v~~~~ 134 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKKY---GKEVQVDLIGVEDPEKRAK----LLKLGVDIVILHR 134 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHHc---CCeEEEEEeCCCCHHHHHH----HHHCCCCEEEEcC
Confidence 346788899999999887663 23344566555442 3555543 45555555543 6668999887743
Q ss_pred CCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 162 PYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 162 P~y~~~s--~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
.+...+ .....+..+.+.+. ++.|-.-.-.++++.+.++.+.
T Consensus 135 -~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~GGI~~~~i~~~~~~ 178 (202)
T cd04726 135 -GIDAQAAGGWWPEDDLKKVKKL-----LGVKVAVAGGITPDTLPEFKKA 178 (202)
T ss_pred -cccccccCCCCCHHHHHHHHhh-----cCCCEEEECCcCHHHHHHHHhc
Confidence 321111 12234555555542 2333222224678888888754
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=82.53 E-value=14 Score=35.02 Aligned_cols=117 Identities=13% Similarity=0.232 Sum_probs=67.4
Q ss_pred CceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccC-cCCCCHH-HHHHHHHHHHHhhCC--CcEEEEe
Q 018253 60 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGE-GQLMSWD-EHIMLIGHTVNCFGA--SVKVIGN 133 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE-~~~LT~~-Er~~li~~~v~~~~g--rvpViag 133 (359)
.||+-..+=-|.+.|. .+.+...++++.+++.|++-|=++| +|.- ....+.+ |..++. .+++.+.. ++||.+-
T Consensus 3 mgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~-~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 3 MGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVV-PVIKALRDQPDVPISVD 81 (257)
T ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEEe
Confidence 4555544445766666 6889999999999999999999975 3322 2234666 544444 34444432 5676554
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+. +.+. ++.|.+.|++-+--+. ... . + +.+..+++. .|+++-+.
T Consensus 82 T~--~~~v----i~~al~~G~~iINsis--~~~-~-~---~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 82 TY--RAEV----ARAALEAGADIINDVS--GGQ-D-P---AMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CC--CHHH----HHHHHHcCCCEEEECC--CCC-C-c---hhHHHHHHcCCcEEEEeC
Confidence 43 3332 3334445988666552 222 2 2 233335554 68777553
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=82.36 E-value=42 Score=32.62 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCHHHHH----HHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG--KTSLEGLI----SHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~--~~s~~~l~----~yf~~Ia~a 182 (359)
++..++.++...++|||.+.+.-|.-. -.|+++.. .|++.|.+.
T Consensus 179 ~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~ 228 (339)
T PRK06252 179 TDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDE 228 (339)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 334566677777778888777777542 23544433 444566554
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=16 Score=35.86 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|+..+.. ..-.|-+..++..|..+. .++. .++|||++.|=.+.+++ ..|.++|+|++++-.-.
T Consensus 211 a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~---~~e~--~~vpVivdAGIg~~sda----~~AmelGadgVL~nSaI 281 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRL---IVEG--ATVPVLVDAGVGTASDA----AVAMELGCDGVLMNTAI 281 (326)
T ss_pred HHHHHhcCCEEEeeccccccCCCCCCCHHHHHH---HHHc--CCCcEEEeCCCCCHHHH----HHHHHcCCCEEEEccee
Confidence 34455668877777 445666666775555444 4444 36999998886667665 56778999999998877
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 018253 164 YGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~ 181 (359)
....++-.+-+-|+.-.+
T Consensus 282 a~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 282 AEAKNPVLMARAMKLAVE 299 (326)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 666677776666665443
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=82.32 E-value=10 Score=40.29 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ +|+=+++ +++..-++.-+-.|.++||
T Consensus 145 ~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~---~~P~~v~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 145 VHTLETYLDLAEELLEMGVDSICIKDMAGI---LTPKAAYELVSALKKRFG--LPVHLHS-HATTGMAEMALLKAIEAGA 218 (582)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhCC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 378999999999999999999999999995 899999999999888774 6766555 5677788889999999999
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|.+=..-
T Consensus 219 ~~vd~ai 225 (582)
T TIGR01108 219 DGIDTAI 225 (582)
T ss_pred CEEEecc
Confidence 9885554
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming | Back alignment and domain information |
|---|
Probab=82.20 E-value=15 Score=36.80 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHh
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~ 151 (359)
|-.|.+-=++-++.+.+.+.+|+.++| +.|| +.+|..++++.+....+...|..+ |+| +..+.++. .+
T Consensus 186 Gg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~iv~~~~~~lp~~kPryl~Gvg--~P~~i~~~----v~ 255 (368)
T TIGR00430 186 GGTYEDLRSQSAEGLIELDFPGYAIGGLSVGE----PKEDMLRILEHTAPLLPKDKPRYLMGVG--TPEDLLNA----IR 255 (368)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeeEeCCccCCC----CHHHHHHHHHHHHhhCCcccceeecCCC--CHHHHHHH----HH
Confidence 455555555568888889999999999 7787 578899999999888887777644 776 45555544 45
Q ss_pred CCCCEEEEcCCCC
Q 018253 152 VGMHAALHINPYY 164 (359)
Q Consensus 152 ~Gadav~v~pP~y 164 (359)
.|+|-+=.+.|+.
T Consensus 256 ~GvD~FD~~~ptr 268 (368)
T TIGR00430 256 RGIDMFDCVMPTR 268 (368)
T ss_pred cCCCEEEecCccc
Confidence 8999775555543
|
This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.19 E-value=25 Score=32.84 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=97.1
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecCCCCH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGSNST 139 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg~~st 139 (359)
+-.+.++=| +.|.-..+.=....+..++.|++=|=+.=.-|..-+-.++.-.+-++.+++.++++ ++||.-++-.+.
T Consensus 61 ~~v~tVigF-P~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ 139 (228)
T COG0274 61 VRVCTVIGF-PLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTD 139 (228)
T ss_pred eEEEEecCC-CCCCChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH
Confidence 336777777 67877777767777788999988777777778888888888888888888888874 778999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEecc
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKEC 218 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~s 218 (359)
++-+...+.+.++|||.|=-..-++ +..=+++.+.-+.+ ...-+|||-|
T Consensus 140 ee~~~A~~i~~~aGAdFVKTSTGf~------------------------------~~gAT~edv~lM~~~vg~~vgvKaS 189 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTSTGFS------------------------------AGGATVEDVKLMKETVGGRVGVKAS 189 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCC------------------------------CCCCCHHHHHHHHHHhccCceeecc
Confidence 9999999999999999665443333 22344555555553 4667889988
Q ss_pred Cch
Q 018253 219 VGN 221 (359)
Q Consensus 219 s~d 221 (359)
+|=
T Consensus 190 GGI 192 (228)
T COG0274 190 GGI 192 (228)
T ss_pred CCc
Confidence 763
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=82.06 E-value=9.4 Score=37.72 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHCCCCEEEEc------cCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 85 VNMQIVNGAEGMIVG------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~------GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
++.|+++|+|++.|. .+|-+..---.. +...+..+++.+.+ ++|||+-=|-..--+.+ .|..+|||+|
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p-qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~----KALA~GAd~V 238 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYP-QLSAVIECADAAHGLKGHIISDGGCTCPGDVA----KAFGAGADFV 238 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcC-HHHHHHHHHHHhccCCCeEEEcCCcCchhHHH----HHHHcCCCEE
Confidence 456778999999877 455554444434 45555556666666 79999943322333322 3455999999
Q ss_pred EEc
Q 018253 158 LHI 160 (359)
Q Consensus 158 ~v~ 160 (359)
|+-
T Consensus 239 MlG 241 (343)
T TIGR01305 239 MLG 241 (343)
T ss_pred EEC
Confidence 998
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.03 E-value=19 Score=37.39 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE--
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL-- 158 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~-- 158 (359)
....++.|+++|++-|++=.+.|- + +-..++++.+.+.. .++|||+|-.. +. +-++++.++|||++-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~--~---~~~~~~i~~i~~~~-~~~~vi~g~~~-t~----~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGH--Q---VKMISAIKAVRALD-LGVPIVAGNVV-SA----EGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCC--c---HHHHHHHHHHHHHC-CCCeEEEeccC-CH----HHHHHHHHhCCCEEEEC
Confidence 457888899999999998777743 3 44555666665544 36899997443 22 334555579999997
Q ss_pred ------EcCCCCCC---CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc--CCC-----eEEEeccCch
Q 018253 159 ------HINPYYGK---TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPN-----LAGVKECVGN 221 (359)
Q Consensus 159 ------v~pP~y~~---~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~--~pn-----ivGiK~ss~d 221 (359)
.+...|.. ++...+.+-.+...+. .|||- --|+.-+-+..+.|+- .-- +.|-.++.++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 45555532 3334444444433333 56553 3577777788888873 222 3333333333
Q ss_pred hhHhhhhCCceEEEecCCc
Q 018253 222 DRVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~ 240 (359)
. +..+.+..+..|-|...
T Consensus 370 ~-~~~~~g~~~k~yrGmgs 387 (475)
T TIGR01303 370 L-MRDRDGRPYKESFGMAS 387 (475)
T ss_pred e-EEeECCEEEEEEecccC
Confidence 1 11133456677777643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=82.02 E-value=8.6 Score=37.42 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhC--CC---CEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeCCCCCCC----CCCHHHH
Q 018253 137 NSTREAIHATEQGFAV--GM---HAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNVPSRTGQ----DIPPRVI 203 (359)
Q Consensus 137 ~st~~ai~la~~a~~~--Ga---dav~v~pP~y~~~s~~~l~~yf~~Ia~a----~PiiiYn~P~~tg~----~ls~e~l 203 (359)
.+.++.++..+.+.++ |. .++|+- + .-|++++.+.++.|.+. ++|.=|--|+..+. -++|+.+
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVG---l-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f 263 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNLPTKSGIMVG---L-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEF 263 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecceEEEE---C-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHH
Confidence 3566666666666665 22 233332 2 45667777777777664 35555655644433 2567777
Q ss_pred HHHhcCCCeEEEec
Q 018253 204 HTMAQSPNLAGVKE 217 (359)
Q Consensus 204 ~~La~~pnivGiK~ 217 (359)
+.+.++..=.|+|.
T Consensus 264 ~~~~~~a~~~gf~~ 277 (302)
T TIGR00510 264 DYYRSVALEMGFLH 277 (302)
T ss_pred HHHHHHHHHcCChh
Confidence 77665444456654
|
The family shows strong sequence conservation. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.00 E-value=6.5 Score=41.00 Aligned_cols=112 Identities=16% Similarity=0.038 Sum_probs=68.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
....++.|+++|++-+.+- +.++++-.. .+.++...+..+++++|++|.-. +. +.++.+.++|||++.+-
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd--~a~g~~~~~---~~~i~~ir~~~~~~~~V~aGnV~-t~----e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 243 YAERVPALVEAGADVLCID--SSEGYSEWQ---KRTLDWIREKYGDSVKVGAGNVV-DR----EGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHHhCCCeEeec--CcccccHHH---HHHHHHHHHhCCCCceEEecccc-CH----HHHHHHHHcCCCEEEEC
Confidence 4566777999999998876 555544333 56677777777666778877553 23 34455557999999773
Q ss_pred CCCC-----------CCCCHHHHHHHHHHHH---hc----CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 161 NPYY-----------GKTSLEGLISHFDSVL---SM----GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 161 pP~y-----------~~~s~~~l~~yf~~Ia---~a----~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
...- ..+.-..+.+-.++.- ++ .|||. -.|+..+-+.++.|+
T Consensus 313 ~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~via-----dgGir~~gdi~KAla 372 (502)
T PRK07107 313 IGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICS-----DGGIVYDYHMTLALA 372 (502)
T ss_pred CCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEE-----cCCCCchhHHHHHHH
Confidence 3211 1122233333333321 11 46543 368888889999998
|
|
| >PRK12677 xylose isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=49 Score=33.25 Aligned_cols=141 Identities=12% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEE--------------ecCCC-------C
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIG--------------NTGSN-------S 138 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpVia--------------gvg~~-------s 138 (359)
+...++.+.+.|.+||-+....-.-+..+..||.+.++.+.+.+. ..+.|.+ +..+. +
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 557778888999999977543323334455565434444333331 2344332 11121 2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCC-----CCCCCHHHHHHH----HHHHHhc-------CCeEEEeCCCC--CCCC-CC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPY-----YGKTSLEGLISH----FDSVLSM-------GPTIIYNVPSR--TGQD-IP 199 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~-----y~~~s~~~l~~y----f~~Ia~a-------~PiiiYn~P~~--tg~~-ls 199 (359)
.+...+.++.|+++|++.+.+.+-+ ....+.++..++ ++.+++. +.+.|=+.|.. ..+- -+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~t 192 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLPT 192 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeCC
Confidence 3335566678888999998887542 122233333333 3355542 23556555542 1222 34
Q ss_pred HHHHHHHh-c--CCCeEEEeccCch
Q 018253 200 PRVIHTMA-Q--SPNLAGVKECVGN 221 (359)
Q Consensus 200 ~e~l~~La-~--~pnivGiK~ss~d 221 (359)
++...++. + .|+.+|+=...+.
T Consensus 193 ~~~al~li~~lg~~~~vGv~lD~gH 217 (384)
T PRK12677 193 VGHALAFIATLEHPEMVGLNPEVGH 217 (384)
T ss_pred HHHHHHHHHHhCCCccEEEeeechH
Confidence 55566655 3 4788886643443
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=81.65 E-value=11 Score=35.46 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++++.+.|++.+++....+... ....-.++++.+.+.+ .+||++|=|=.|.+++.++.. +|++.+++-
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~----~Ga~~vivg 103 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLR----AGADKVSIN 103 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHH----cCCCEEEEC
Confidence 34466666789999999998877532 3334566777777765 589999777667777666544 799999998
Q ss_pred CCCCCCCC-HHHHHHHH
Q 018253 161 NPYYGKTS-LEGLISHF 176 (359)
Q Consensus 161 pP~y~~~s-~~~l~~yf 176 (359)
...+..+. .+++.+.|
T Consensus 104 t~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 104 TAAVKNPELIYELADRF 120 (254)
T ss_pred hhHhhChHHHHHHHHHc
Confidence 77765432 23344444
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.52 E-value=44 Score=35.21 Aligned_cols=145 Identities=17% Similarity=0.088 Sum_probs=93.2
Q ss_pred eEEeeecCCCCC-------------------CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHH--------H
Q 018253 62 LITAIKTPYLPD-------------------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------I 114 (359)
Q Consensus 62 i~~al~TPF~~d-------------------g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er--------~ 114 (359)
++.+=+||-+-| |.++.+.+...++.|.. ++--|.|-.|.+|=.+-+ +
T Consensus 37 illaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~-----~lepG~t~qfN~ifldpylw~~qig~k 111 (717)
T COG4981 37 ILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVS-----LLEPGRTAQFNSIFLDPYLWKLQIGGK 111 (717)
T ss_pred eeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHh-----ccCCCccceeeEEEechHHhhhcCChH
Confidence 777778887644 78999999999998865 233444444444332222 3
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 115 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
+|+..++..-..--=|+++.|=.+.++|.|+++..-+.|...+. +||..-+.++-.-.||.+ .||+++=--
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~------fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVA------FKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEE------ecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 56766665322111256677778999999999987777765443 455433334455567876 589999777
Q ss_pred CCCCCCCCH--------HHHHHHhcCCCeEEEec
Q 018253 192 SRTGQDIPP--------RVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 192 ~~tg~~ls~--------e~l~~La~~pnivGiK~ 217 (359)
++.|-.=|- .+..+|-.++||+=+--
T Consensus 186 GraGGHHSweDld~llL~tYs~lR~~~NIvl~vG 219 (717)
T COG4981 186 GRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVG 219 (717)
T ss_pred CccCCccchhhcccHHHHHHHHHhcCCCEEEEec
Confidence 776654443 34556667999985543
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.34 E-value=23 Score=36.01 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+.++.|+++|+|-|++=.+.| ++.+ ..++++.+.+..+ +++||+|-.+ + .+.++++.++|||++.+-
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g--~~~~---~~~~v~~ik~~~p-~~~vi~g~V~-T----~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHG--HSTR---IIELVKKIKTKYP-NLDLIAGNIV-T----KEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CChh---HHHHHHHHHhhCC-CCcEEEEecC-C----HHHHHHHHHcCCCEEEEC
Confidence 45778889999999888755553 3333 3455555555554 5788875443 2 455666677999999865
Q ss_pred C-CCC---------CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh--cCCC-----eEEEeccCch
Q 018253 161 N-PYY---------GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA--QSPN-----LAGVKECVGN 221 (359)
Q Consensus 161 p-P~y---------~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La--~~pn-----ivGiK~ss~d 221 (359)
. |.- ....+-..+....++++. .|||. --|+.-+-+..+.|+ ..-- +.|-.++.++
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA-----dGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA-----DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCc
Confidence 2 321 011233344444556554 57653 356666667777776 2322 3344444333
Q ss_pred hhHhhhhCCceEEEecCCc
Q 018253 222 DRVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~ 240 (359)
.- ..-+..+..|-|...
T Consensus 298 ~~--~~~g~~~K~yrGmgS 314 (404)
T PRK06843 298 EI--IYNGKKFKSYVGMGS 314 (404)
T ss_pred EE--EECCEEEEEEeccch
Confidence 21 122455677777643
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=81.33 E-value=11 Score=39.41 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=85.1
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTG 135 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg 135 (359)
+-.|..+. +++- +.++-|.+-+.++++.+.+.|++-|.++-|.|= ++++|-.++++.+.+.++++ +|+=++ .
T Consensus 130 k~~g~~v~-f~~e-d~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H-~ 203 (513)
T PRK00915 130 RSYTDDVE-FSAE-DATRTDLDFLCRVVEAAIDAGATTINIPDTVGY---TTPEEFGELIKTLRERVPNIDKAIISVH-C 203 (513)
T ss_pred HHCCCeEE-EEeC-CCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCcccceEEEE-e
Confidence 34565543 3333 245689999999999999999999999999996 58999999999998877543 554444 4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+++..-++..+..|.++||+.+-..---+. ..+-++++..++.
T Consensus 204 HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~ 250 (513)
T PRK00915 204 HNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKT 250 (513)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHh
Confidence 678888999999999999998866643332 2345666555543
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=19 Score=37.25 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.-+.+-+.++++.+.+.|++.|.+.-|+|= |++++-.++++.+.+. .++||=++. +++..-++.-+-.|.++||
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~---l~P~~v~~Lv~alk~~--~~~pi~~H~-Hnt~GlA~An~laAieAGa 232 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSICIKDMAGI---LTPKAAKELVSGIKAM--TNLPLIVHT-HATSGISQMTYLAAVEAGA 232 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHhc--cCCeEEEEe-CCCCccHHHHHHHHHHcCC
Confidence 347788999999999999999999999994 7999999999888763 357776655 5677888899999999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-|+++.+++
T Consensus 233 d~vD~ai~g~g~gagN~~tE~lv~~L~ 259 (468)
T PRK12581 233 DRIDTALSPFSEGTSQPATESMYLALK 259 (468)
T ss_pred CEEEeeccccCCCcCChhHHHHHHHHH
Confidence 988443 344333 33455554444
|
|
| >TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities | Back alignment and domain information |
|---|
Probab=81.06 E-value=16 Score=36.57 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCCHHHHHH-HHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-EecCCCCHHHHHHHHHHHH
Q 018253 74 GRFDLEAYDD-LVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 74 g~ID~~~l~~-li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVi-agvg~~st~~ai~la~~a~ 150 (359)
|..+.+ +++ -++.+.+.+.+|+.++| +.|| +.+|..++++.+.+..+...|.. .|+| +..+.++. .
T Consensus 185 Gg~~~d-LR~~sa~~l~~~~~~GyaIGGl~~ge----~~~~~~~~l~~~~~~lP~~kPryl~Gvg--~P~~i~~~----v 253 (367)
T TIGR00449 185 GGTYPD-LRRQSAEGLAELDFDGYAIGGVSVGE----PKRDMLRILEHVAPLLPKDKPRYLMGVG--TPELLANA----V 253 (367)
T ss_pred CCCCHH-HHHHHHHHHhhCCCCeEEEeCcccCC----CHHHHHHHHHHHHhhCCcccceEecCCC--CHHHHHHH----H
Confidence 334444 443 48888888999999999 7788 44999999999998888766754 4777 46665544 4
Q ss_pred hCCCCEEEEcCCC
Q 018253 151 AVGMHAALHINPY 163 (359)
Q Consensus 151 ~~Gadav~v~pP~ 163 (359)
.+|+|-+=.+.|.
T Consensus 254 ~~GvD~FD~~~pt 266 (367)
T TIGR00449 254 SLGIDMFDCVAPT 266 (367)
T ss_pred HcCCCEEeeCCcc
Confidence 4899977555554
|
Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=81.04 E-value=31 Score=30.89 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++.+.+.|++-+.+-+.++. ..-.++++.+.+ -.+++++++.+..+ ..+.++.+.+.|+|.+.+.|.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~------~~~~~~i~~~~~---~g~~~~~~~~~~~t--~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD------ATIKGAVKAAKK---HGKEVQVDLINVKD--KVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH------HHHHHHHHHHHH---cCCEEEEEecCCCC--hHHHHHHHHHcCCCEEEEcCCc
Confidence 577788999999988776542 222455555444 24788887543322 5566666778899988775433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 164 YGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
-.......-.+..+++.+..|.+..- ..| .++++.+.++.+.
T Consensus 137 ~~~~~~~~~~~~i~~l~~~~~~~~i~---v~G-GI~~~n~~~~~~~ 178 (206)
T TIGR03128 137 DEQAKGQNPFEDLQTILKLVKEARVA---VAG-GINLDTIPDVIKL 178 (206)
T ss_pred CcccCCCCCHHHHHHHHHhcCCCcEE---EEC-CcCHHHHHHHHHc
Confidence 21110011123344444433311111 123 4588888888753
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=81.03 E-value=57 Score=32.03 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=74.5
Q ss_pred EEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 63 ITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 63 ~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+|-++.|++ .|+ .-.+-.++++.-..+.|+.-- .|+.+= .+...|..+-.+.+.+. ...+|+++.++.....+
T Consensus 54 ~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~--~Gs~~~--~~~~~~~~~~~~~vr~~-~~~~p~i~nl~~~~~~~ 127 (333)
T TIGR02151 54 APFYINAMT-GGSEEAGKINRNLARAARELGIPMG--VGSQRA--ALKDPETADTFEVVREE-APNGPLIANIGAPQLVE 127 (333)
T ss_pred CCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeE--EcCchh--hccChhhHhHHHHHHHh-CCCCcEEeecCchhhcc
Confidence 455566665 344 222235666666666776532 344221 23334444334555554 55789999988654432
Q ss_pred --HHHHHHHHHhCCCCEEEEcCCCCC-------CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 142 --AIHATEQGFAVGMHAALHINPYYG-------KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 142 --ai~la~~a~~~Gadav~v~pP~y~-------~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
.-+..+..+.++||++-+--+... ..+.+.+.+.++.|.+. .||++=-. |..++.++.++|.+
T Consensus 128 ~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g~g~~~~~a~~L~~ 201 (333)
T TIGR02151 128 GGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV----GFGISKEVAKLLAD 201 (333)
T ss_pred ccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec----CCCCCHHHHHHHHH
Confidence 222333334457777755432111 11234555777777775 69987643 44578888888865
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=80.90 E-value=16 Score=33.47 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHH-HHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEG-LISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~-l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
+..++++.+++.|++.++++.=.-. .+..+ =.+.++++.+. .|++. + |---+++.+.++.+..++-|+=
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~~~-g~~~G~d~~~i~~l~~~~~ipvia-~-----GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDISRD-GTLSGPNVEATRELAAAVPIPVIA-S-----GGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeecCc-CCcCCCCHHHHHHHHHhCCCCEEE-e-----CCCCCHHHHHHHHHcCCccEEE
Confidence 3466777777777776666521110 00011 13444555544 35333 1 2234566666666554444443
|
|
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=80.85 E-value=32 Score=29.32 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+++++...+.+++-+.+....+. +...-.++++...+.-..+++|++| .......+.-+.-+.++++|+|++.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGH----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccc----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 345566666777887777666663 4455566666666553445676664 33334445556666777788876632
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia 180 (359)
...+.+++.+|.+.-+
T Consensus 119 -----~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 119 -----PGTDPEEAIDDLKKDL 134 (137)
T ss_pred -----cCCCHHHHHHHHHHHh
Confidence 1235678888877654
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.84 E-value=9 Score=37.97 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCC-CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~L-T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.|.+....+.+.+.++|++=|.|=|-|-|--.+ +.--.-+-++.+++.... +|||++=+=.+.+|+-+..+ ..|+
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~---~tG~ 227 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCLK---YTGA 227 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHH---HhCC
Confidence 577788888889999999999999988775543 333334556666676765 99999766667777665544 4899
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|+||+.-
T Consensus 228 dGVM~ar 234 (358)
T KOG2335|consen 228 DGVMSAR 234 (358)
T ss_pred ceEEecc
Confidence 9999864
|
|
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Probab=80.83 E-value=55 Score=31.47 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CHHH----HHHHHHHHHhc-----CCeEEEeC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEG----LISHFDSVLSM-----GPTIIYNV 190 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~--s~~~----l~~yf~~Ia~a-----~PiiiYn~ 190 (359)
++-.+++++...++|+|.+.+.-|.-... |++. +..|++++.+. .|++++..
T Consensus 167 ~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 167 TEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC
Confidence 55566666766677777777777654332 5433 33444555543 25555543
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=13 Score=38.89 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=82.8
Q ss_pred cCCceEEeeecCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPD-GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~d-g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+-.|.-+..-.+.--| .+-|.+-+.++++.+.+.|++-+.+.-|+| .+++++-.++++.+.+.+ ++|+=++. +
T Consensus 136 k~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG---~~~P~~v~~li~~l~~~~--~v~i~~H~-H 209 (524)
T PRK12344 136 KAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNG---GTLPHEVAEIVAEVRAAP--GVPLGIHA-H 209 (524)
T ss_pred HHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCC---CcCHHHHHHHHHHHHHhc--CCeEEEEE-C
Confidence 3456544433331113 468999999999999999999999999998 589999999999988877 46666554 5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf 176 (359)
++.--++..+..|.++||+.+=..---.. ..+-++++.++
T Consensus 210 ND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 210 NDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHH
Confidence 78888999999999999999866543332 23445655444
|
|
| >PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=31 Score=30.63 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=43.3
Q ss_pred EEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH----------HHHHHHHHHHHhCCCCEEEEc---CC
Q 018253 96 MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST----------REAIHATEQGFAVGMHAALHI---NP 162 (359)
Q Consensus 96 l~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st----------~~ai~la~~a~~~Gadav~v~---pP 162 (359)
++-.|-+|+-.. +-.+-++..+...+.+ -|++.+|.|+. ++.-++.+.+++.|++-+++. ||
T Consensus 46 v~N~Gi~G~tt~----~~~~rl~~~l~~~~pd-~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~ 120 (191)
T PRK10528 46 VVNASISGDTSQ----QGLARLPALLKQHQPR-WVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPA 120 (191)
T ss_pred EEecCcCcccHH----HHHHHHHHHHHhcCCC-EEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 777777786432 2222222333332333 35555555553 334455666667788877763 34
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 018253 163 YYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a 182 (359)
.|.....+.+.+.+++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~a~~ 140 (191)
T PRK10528 121 NYGRRYNEAFSAIYPKLAKE 140 (191)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 44333335566667777765
|
|
| >TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=80.69 E-value=1.1e+02 Score=35.43 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=81.5
Q ss_pred CCCHHH----HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEe-cC---------CC
Q 018253 75 RFDLEA----YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGN-TG---------SN 137 (359)
Q Consensus 75 ~ID~~~----l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~---~grvpViag-vg---------~~ 137 (359)
.++++. +...++.|++.|||.|++= | ..+..|-+..+..+.+.. +.++||++. +. +.
T Consensus 140 ~~t~del~~~y~eq~~~L~~~GvD~iliE-T-----i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~ 213 (1178)
T TIGR02082 140 NVTYDELVDAYTEQAKGLLDGGVDLLLIE-T-----CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQ 213 (1178)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCC
Confidence 355554 5566888889999987752 2 235677777777766543 347899988 21 13
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC----CCCCCCHHHHHHHh----
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR----TGQDIPPRVIHTMA---- 207 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~----tg~~ls~e~l~~La---- 207 (359)
+.++++... +..|++++-+= =...++.+..+.+.+++. .|+++|-+-+. ..++.+|+.+.+..
T Consensus 214 ~~~~~~~~l---~~~~~~avGlN----Cs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~ 286 (1178)
T TIGR02082 214 TIEAFLTSL---EHAGIDMIGLN----CALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFA 286 (1178)
T ss_pred cHHHHHHHH---hcCCCCEEEeC----CCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHH
Confidence 444444443 45788876652 112478999999999875 69999966322 24667887665543
Q ss_pred cC--CCeEEE
Q 018253 208 QS--PNLAGV 215 (359)
Q Consensus 208 ~~--pnivGi 215 (359)
+. -||+|=
T Consensus 287 ~~ggv~IIGG 296 (1178)
T TIGR02082 287 AEGGLNIVGG 296 (1178)
T ss_pred HhCCCcEEEe
Confidence 32 466663
|
S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. |
| >PRK13475 ribulose bisphosphate carboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=33 Score=35.24 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=66.3
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhC---CCcEE-EEecCCCCH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNST 139 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~---grvpV-iagvg~~st 139 (359)
-+-|-+++.--+.-+.+.+++..+... +|=+ =-- .-........+||...+-.+++.+. |+.++ .+++++.++
T Consensus 160 L~gtiiKPklGLsp~~~a~~~ye~~~G-gD~I-KDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiTa~~~ 237 (443)
T PRK13475 160 IAGTIIKPKLGLRPEPFAEACYDFWLG-GDFI-KNDEPQGNQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANITADDH 237 (443)
T ss_pred eEEEecCccccCCHHHHHHHHHHHHhc-CCcc-cccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCCCCCH
Confidence 345556666558899999998877664 4521 111 2345667889999888777776542 44454 568988889
Q ss_pred HHHHHHHHHHHhC-CCC----EEEEc
Q 018253 140 REAIHATEQGFAV-GMH----AALHI 160 (359)
Q Consensus 140 ~~ai~la~~a~~~-Gad----av~v~ 160 (359)
+|.+++++.|++. |++ ++|+-
T Consensus 238 ~em~~ra~~a~e~~G~~~~~~~vmv~ 263 (443)
T PRK13475 238 YEMIARGEYILETFGENADHVAFLVD 263 (443)
T ss_pred HHHHHHHHHHHHhcCCCccceEEEEc
Confidence 9999999999997 988 55554
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=80.65 E-value=60 Score=31.98 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=9.2
Q ss_pred ccccccHHHHHHHHH
Q 018253 257 VTSNLVPGMMRELMF 271 (359)
Q Consensus 257 ~~an~~P~l~~~l~~ 271 (359)
+.+|.--+.++...+
T Consensus 227 ~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 227 GAGNAPLEVFVAVLD 241 (333)
T ss_pred cccCccHHHHHHHHH
Confidence 456766676666554
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=80.58 E-value=17 Score=34.57 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=42.2
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
.+...=.||-....=-.++++.-.+.+-+.|++.+-+=|+ +|-.+.++... ...+||++++|-
T Consensus 77 ~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG---------~~~~~~i~~L~---~~gIPV~gHiGL 139 (268)
T COG0413 77 AFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG---------EEMAETIKRLT---ERGIPVMGHIGL 139 (268)
T ss_pred eeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC---------HHHHHHHHHHH---HcCCceEEEecC
Confidence 5555667887544344455655555555599999999887 45555555544 456999999874
|
|
| >TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein | Back alignment and domain information |
|---|
Probab=80.54 E-value=21 Score=33.54 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=41.2
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
+....+.+...+..+.+.+.|+|++++.+. +.+.+...++.+.++ .|+++++.+
T Consensus 36 ~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 36 GPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 344567888889999999999999999753 345556667777666 799999864
|
This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source. |
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=39 Score=39.14 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=80.9
Q ss_pred CCCHHHH----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh---hCCCcEEEEecCCCC------HHH
Q 018253 75 RFDLEAY----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGSNS------TRE 141 (359)
Q Consensus 75 ~ID~~~l----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~---~~grvpViagvg~~s------t~~ 141 (359)
.++++.+ ...++.|++.|||.|++ -| ..+..|-+..+..+.+. .+.++||++..+-.. .-+
T Consensus 156 ~it~del~~~y~eQi~~L~e~GVDllli-ET-----i~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~ 229 (1229)
T PRK09490 156 NVTFDELVAAYREQTRGLIEGGADLILI-ET-----IFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQ 229 (1229)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-ee-----eCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCC
Confidence 4666654 45588888999998774 22 23566767777665543 234789988654211 111
Q ss_pred HH-HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC----CCCCCCHHHHHHHh----cCC
Q 018253 142 AI-HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR----TGQDIPPRVIHTMA----QSP 210 (359)
Q Consensus 142 ai-~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~----tg~~ls~e~l~~La----~~p 210 (359)
.+ +........|++++-+= . ...++++..+.+.+++. .||.+|-|-+. ..++.+|+.+.+.. +..
T Consensus 230 ~~ea~~~~l~~~~~~avGlN--C--s~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G 305 (1229)
T PRK09490 230 TTEAFWNSLRHAKPLSIGLN--C--ALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESG 305 (1229)
T ss_pred cHHHHHHHHhcCCCCEEEEc--C--CCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 22 22233346788766542 1 12478899999999865 69999987432 25678887766554 334
Q ss_pred --CeEEEe
Q 018253 211 --NLAGVK 216 (359)
Q Consensus 211 --nivGiK 216 (359)
||+|=-
T Consensus 306 ~v~IIGGC 313 (1229)
T PRK09490 306 FLNIVGGC 313 (1229)
T ss_pred CCCEEEec
Confidence 666643
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=80.07 E-value=5.1 Score=38.02 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCCcEEEEecCCCCH--------HHHHHHHHHHHhCCCCEEEE-cCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC
Q 018253 125 GASVKVIGNTGSNST--------REAIHATEQGFAVGMHAALH-INPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR 193 (359)
Q Consensus 125 ~grvpViagvg~~st--------~~ai~la~~a~~~Gadav~v-~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~ 193 (359)
.+++|||+-+-..|. .+..++|+.+++.||+++.+ +-|.||..+ .++.+.+.+. .||+..|
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~----~~~l~~v~~~v~iPvl~kd---- 118 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS----LEYLRAARAAVSLPVLRKD---- 118 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC----HHHHHHHHHhcCCCEEeee----
Confidence 457999998744333 24689999999999999976 447788777 5666667665 6999765
Q ss_pred CCCCCCHHHHHHHhcC-CCeEEEeccC
Q 018253 194 TGQDIPPRVIHTMAQS-PNLAGVKECV 219 (359)
Q Consensus 194 tg~~ls~e~l~~La~~-pnivGiK~ss 219 (359)
+-+++-.+.+..+. -.++-+=.+.
T Consensus 119 --fi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 119 --FIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred --ecCCHHHHHHHHHcCCCEEEEEecc
Confidence 34556566665543 4555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 4dpp_A | 360 | The Structure Of Dihydrodipicolinate Synthase 2 Fro | 1e-166 | ||
| 3tuu_A | 346 | Structure Of Dihydrodipicolinate Synthase From The | 1e-164 | ||
| 3pud_A | 291 | Crystal Structure Of Dhydrodipicolinate Synthase Fr | 8e-40 | ||
| 3pb2_A | 300 | Characterisation Of The First Monomeric Dihydrodipi | 2e-38 | ||
| 3pb0_A | 300 | Characterisation Of The First Monomeric Dihydrodipi | 3e-38 | ||
| 1o5k_A | 306 | Crystal Structure Of Dihydrodipicolinate Synthase ( | 1e-37 | ||
| 3qze_A | 314 | Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolut | 2e-37 | ||
| 2yxg_A | 289 | Crystal Structure Of Dihyrodipicolinate Synthase (D | 1e-35 | ||
| 3noe_A | 292 | Crystal Structure Of Dihydrodipicolinate Synthase F | 1e-35 | ||
| 1dhp_A | 292 | Dihydrodipicolinate Synthase Length = 292 | 1e-35 | ||
| 2ojp_A | 292 | The Crystal Structure Of A Dimeric Mutant Of Dihydr | 1e-35 | ||
| 3i7q_A | 292 | Dihydrodipicolinate Synthase Mutant - K161a Length | 3e-35 | ||
| 2ehh_A | 294 | Crystal Structure Of Dihydrodipicolinate Synthase F | 3e-35 | ||
| 1xky_A | 301 | Crystal Structure Of Dihydrodipicolinate Synthase D | 3e-35 | ||
| 1s5w_A | 292 | Crystal Structure Analysis Of A Mutant Of Dihydrodi | 4e-35 | ||
| 1s5v_A | 292 | Crystal Structure Analysis Of A Mutant Of Dihydrodi | 4e-35 | ||
| 1s5t_A | 292 | Crystal Structure Analysis Of A Mutant Of Dihydrodi | 5e-35 | ||
| 3c0j_A | 292 | Structure Of E. Coli Dihydrodipicolinate Synthase C | 7e-35 | ||
| 2a6l_A | 292 | Dihydrodipicolinate Synthase (E. Coli)- Mutant R138 | 9e-35 | ||
| 2a6n_A | 292 | Dihydrodipicolinate Synthase (E. Coli)- Mutant R138 | 1e-34 | ||
| 3g0s_A | 316 | Dihydrodipicolinate Synthase From Salmonella Typhim | 1e-34 | ||
| 2pur_A | 292 | Structure Of Dihydrodipicolinate Synthase Mutant Th | 2e-34 | ||
| 3hij_A | 292 | Crystal Structure Of Dihydrodipicolinate Synthase F | 2e-34 | ||
| 3flu_A | 297 | Crystal Structure Of Dihydrodipicolinate Synthase F | 2e-34 | ||
| 3h5d_A | 311 | Dihydrodipicolinate Synthase From Drug-Resistant St | 3e-34 | ||
| 3den_A | 292 | Structure Of E. Coli Dhdps Mutant Y107w Length = 29 | 4e-34 | ||
| 3ird_A | 291 | Structure Of Dihydrodipicolinate Synthase From Clos | 3e-33 | ||
| 3daq_A | 292 | Crystal Structure Of Dihydrodipicolinate Synthase F | 5e-33 | ||
| 3a5f_A | 291 | High-Resolution Structure Of Dhdps From Clostridium | 1e-32 | ||
| 3di0_A | 295 | Crystal Structure Of Dihydrodipicolinate Synthase F | 2e-32 | ||
| 2rfg_A | 297 | Crystal Structure Of Dihydrodipicolinate Synthase F | 6e-31 | ||
| 3m5v_A | 301 | Crystal Structure Of Dihydrodipicolinate Synthase F | 1e-30 | ||
| 3ler_A | 301 | Crystal Structure Of Dihydrodipicolinate Synthase F | 5e-30 | ||
| 2vc6_A | 292 | Structure Of Mosa From S. Meliloti With Pyruvate Bo | 1e-29 | ||
| 3si9_A | 315 | Crystal Structure Of Dihydrodipicolinate Synthase F | 5e-26 | ||
| 1xxx_A | 303 | Crystal Structure Of Dihydrodipicolinate Synthase ( | 9e-26 | ||
| 3l21_A | 304 | The Crystal Structure Of A Dimeric Mutant Of Dihydr | 2e-25 | ||
| 3cpr_A | 304 | The Crystal Structure Of Corynebacterium Glutamicum | 2e-18 | ||
| 2v8z_A | 343 | Crystal Structure Of Yage, A Prophage Protein Belon | 1e-16 | ||
| 3nev_A | 298 | Crystal Structure Of Yage, A Prophage Protein From | 1e-16 | ||
| 2v9d_A | 343 | Crystal Structure Of Yage, A Prophage Protein Belon | 2e-16 | ||
| 1hl2_A | 297 | Crystal Structure Of N-Acetylneuraminate Lyase From | 2e-16 | ||
| 3n2x_A | 298 | Crystal Structure Of Yage, A Prophage Protein Belon | 5e-16 | ||
| 3lch_A | 319 | The D-Sialic Acid Aldolase Mutant V251r Length = 31 | 1e-15 | ||
| 3lcw_A | 319 | L-Kdo Aldolase Complexed With Hydroxypyruvate Lengt | 2e-15 | ||
| 3lcg_A | 319 | The D-Sialic Acid Aldolase Mutant V251l Length = 31 | 2e-15 | ||
| 3lcf_A | 319 | The D-Sialic Acid Aldolase Mutant V251i Length = 31 | 2e-15 | ||
| 3lbc_A | 319 | D-Sialic Acid Aldolase Complexed With L-Arabinose L | 2e-15 | ||
| 2wo5_A | 304 | Structure Of Wild Type E. Coli N-Acetylneuraminic A | 2e-15 | ||
| 1nal_1 | 297 | The Three-Dimensional Structure Of N-Acetylneuramin | 2e-15 | ||
| 2wnq_A | 304 | Structure Of The E192n Mutant Of E. Coli N-Acetylne | 3e-15 | ||
| 3lcl_A | 319 | The D-Sialic Acid Aldolase Mutant V251iV265I Length | 3e-15 | ||
| 3lci_A | 319 | The D-Sialic Acid Aldolase Mutant V251w Length = 31 | 3e-15 | ||
| 1fdz_A | 297 | N-Acetylneuraminate Lyase In Complex With Pyruvate | 7e-15 | ||
| 2wnn_A | 303 | Structure Of Wild Type E. Coli N-Acetylneuraminic A | 9e-15 | ||
| 2wkj_A | 303 | Crystal Structure Of The E192n Mutant Of E.Coli N-A | 1e-14 | ||
| 2wnz_A | 304 | Structure Of The E192n Mutant Of E. Coli N-Acetylne | 1e-14 | ||
| 3s5n_A | 304 | Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate | 5e-12 | ||
| 2pcq_A | 283 | Crystal Structure Of Putative Dihydrodipicolinate S | 1e-11 | ||
| 3s5o_A | 307 | Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate | 3e-11 | ||
| 3qfe_A | 318 | Crystal Structures Of A Putative Dihydrodipicolinat | 1e-09 | ||
| 3na8_A | 315 | Crystal Structure Of A Putative Dihydrodipicolinate | 2e-09 | ||
| 2nuw_A | 288 | 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Ac | 5e-09 | ||
| 1f6p_A | 293 | Crystal Structure Analysis Of N-Acetylneuraminate L | 3e-08 | ||
| 3b4u_A | 294 | Crystal Structure Of Dihydrodipicolinate Synthase F | 3e-08 | ||
| 1w3i_A | 293 | Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kd | 3e-08 | ||
| 1w37_A | 294 | 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus | 3e-08 | ||
| 2yda_A | 294 | Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Ald | 7e-08 | ||
| 2r91_A | 286 | Crystal Structure Of Kd(P)ga From T.Tenax Length = | 3e-07 | ||
| 4ahp_A | 298 | Crystal Structure Of Wild Type N-acetylneuraminic A | 6e-07 | ||
| 4ah7_A | 298 | Structure Of Wild Type Stapylococcus Aureus N-acety | 3e-06 | ||
| 4aho_A | 299 | Crystal Structure Of N-acetylneuraminic Acid Lyase | 3e-06 | ||
| 4ahq_A | 298 | Crystal Structure Of N-acetylneuraminic Acid Lyase | 6e-06 | ||
| 3e96_A | 316 | Crystal Structure Of Dihydrodipicolinate Synthase F | 2e-04 |
| >pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana Length = 360 | Back alignment and structure |
|
| >pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common Grapevine Length = 346 | Back alignment and structure |
|
| >pdb|3PUD|A Chain A, Crystal Structure Of Dhydrodipicolinate Synthase From Acinetobacter Baumannii At 2.8a Resolution Length = 291 | Back alignment and structure |
|
| >pdb|3PB2|A Chain A, Characterisation Of The First Monomeric Dihydrodipicolinate Synthase Variant Reveals Evolutionary Insights Length = 300 | Back alignment and structure |
|
| >pdb|3PB0|A Chain A, Characterisation Of The First Monomeric Dihydrodipicolinate Synthase Variant Reveals Evolutionary Insights Length = 300 | Back alignment and structure |
|
| >pdb|1O5K|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521) From Thermotoga Maritima At 1.80 A Resolution Length = 306 | Back alignment and structure |
|
| >pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution Length = 314 | Back alignment and structure |
|
| >pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa) Length = 289 | Back alignment and structure |
|
| >pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa Length = 292 | Back alignment and structure |
|
| >pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase Length = 292 | Back alignment and structure |
|
| >pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y Length = 292 | Back alignment and structure |
|
| >pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a Length = 292 | Back alignment and structure |
|
| >pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Aquifex Aeolicus Length = 294 | Back alignment and structure |
|
| >pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2 (Ba3935) From Bacillus Anthracis At 1.94a Resolution. Length = 301 | Back alignment and structure |
|
| >pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133 Length = 292 | Back alignment and structure |
|
| >pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107 Length = 292 | Back alignment and structure |
|
| >pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Thr44 To Val44 Length = 292 | Back alignment and structure |
|
| >pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Complexed With Hydroxypyruvate Length = 292 | Back alignment and structure |
|
| >pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h Length = 292 | Back alignment and structure |
|
| >pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a Length = 292 | Back alignment and structure |
|
| >pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium Lt2 Length = 316 | Back alignment and structure |
|
| >pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser At 1.7 A. Length = 292 | Back alignment and structure |
|
| >pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Bacillus Anthracis In Complex With Its Substrate, Pyruvate Length = 292 | Back alignment and structure |
|
| >pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The Pathogen Neisseria Meningitidis Length = 297 | Back alignment and structure |
|
| >pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant Streptococc Pneumoniae Length = 311 | Back alignment and structure |
|
| >pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w Length = 292 | Back alignment and structure |
|
| >pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium Botulinum Length = 291 | Back alignment and structure |
|
| >pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus Length = 292 | Back alignment and structure |
|
| >pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium Botulinum In Complex With Pyruvate Length = 291 | Back alignment and structure |
|
| >pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Staphylococcus Aureus Length = 295 | Back alignment and structure |
|
| >pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Hahella Chejuensis At 1.5a Resolution Length = 297 | Back alignment and structure |
|
| >pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Campylobacter Jejuni Length = 301 | Back alignment and structure |
|
| >pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 301 | Back alignment and structure |
|
| >pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound Length = 292 | Back alignment and structure |
|
| >pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Bartonella Henselae Length = 315 | Back alignment and structure |
|
| >pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa, Rv2753c) From Mycobacterium Tuberculosis Length = 303 | Back alignment and structure |
|
| >pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of Dihydrodipicolinate Synthase (Dapa, Rv2753c) From Mycobacterium Tuberculosis - Dhdps- A204r Length = 304 | Back alignment and structure |
|
| >pdb|3CPR|A Chain A, The Crystal Structure Of Corynebacterium Glutamicum Dihydrodipicolinate Synthase To 2.2 A Resolution Length = 304 | Back alignment and structure |
|
| >pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 Length = 343 | Back alignment and structure |
|
| >pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli K12 In Complex With Kdgal Length = 298 | Back alignment and structure |
|
| >pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 Length = 343 | Back alignment and structure |
|
| >pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E. Coli Mutant L142r In Complex With B-Hydroxypyruvate Length = 297 | Back alignment and structure |
|
| >pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 In Complex With Pyruvate Length = 298 | Back alignment and structure |
|
| >pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r Length = 319 | Back alignment and structure |
|
| >pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate Length = 319 | Back alignment and structure |
|
| >pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l Length = 319 | Back alignment and structure |
|
| >pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i Length = 319 | Back alignment and structure |
|
| >pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose Length = 319 | Back alignment and structure |
|
| >pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid Lyase In Space Group P21 Crystal Form I Length = 304 | Back alignment and structure |
|
| >pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate Lyase From Escherichia Coli Length = 297 | Back alignment and structure |
|
| >pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli N-Acetylneuraminic Acid Lyase In Space Group P21 Length = 304 | Back alignment and structure |
|
| >pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I Length = 319 | Back alignment and structure |
|
| >pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w Length = 319 | Back alignment and structure |
|
| >pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via Borohydride Reduction Length = 297 | Back alignment and structure |
|
| >pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate In Space Group P21 Length = 303 | Back alignment and structure |
|
| >pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate At 1.45a Resolution In Space Group P212121 Length = 303 | Back alignment and structure |
|
| >pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate In Space Group P21 Crystal Form I Length = 304 | Back alignment and structure |
|
| >pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate Aldolase Length = 304 | Back alignment and structure |
|
| >pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase (Ttha0737) From Thermus Thermophilus Hb8 Length = 283 | Back alignment and structure |
|
| >pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate Aldolase Bound To Pyruvate Length = 307 | Back alignment and structure |
|
| >pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate Synthase Family Protein From Coccidioides Immitis Length = 318 | Back alignment and structure |
|
| >pdb|3NA8|A Chain A, Crystal Structure Of A Putative Dihydrodipicolinate Synthetase From Pseudomonas Aeruginosa Length = 315 | Back alignment and structure |
|
| >pdb|2NUW|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure At 1.8 A Resolution Length = 288 | Back alignment and structure |
|
| >pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase From Haemophilus Influenzae: Crystal Form Iii Length = 293 | Back alignment and structure |
|
| >pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58 Length = 294 | Back alignment and structure |
|
| >pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg) Aldolase Complex With Pyruvate Length = 293 | Back alignment and structure |
|
| >pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus Solfataricus Length = 294 | Back alignment and structure |
|
| >pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase Y103f,Y130f, A198f Variant Length = 294 | Back alignment and structure |
|
| >pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax Length = 286 | Back alignment and structure |
|
| >pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid Lyase From Staphylococcus Aureus Length = 298 | Back alignment and structure |
|
| >pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus N-acetylneuraminic Acid Lyase In Complex With Pyruvate Length = 298 | Back alignment and structure |
|
| >pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From Staphylococcus Aureus With The Chemical Modification Thia-lysine At Position 165 Length = 299 | Back alignment and structure |
|
| >pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant K165c From Staphylococcus Aureus Length = 298 | Back alignment and structure |
|
| >pdb|3E96|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Bacillus Clausii Length = 316 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* Length = 360 | Back alignment and structure |
|---|
Score = 467 bits (1205), Expect = e-166
Identities = 275/347 (79%), Positives = 308/347 (88%), Gaps = 3/347 (0%)
Query: 16 PVSVSCTGKNRKWR---PPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLP 72
P+ + +N ++ P AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLP
Sbjct: 14 PLLGLDSTENLYFQGIDPFTAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLP 73
Query: 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG 132
DGRFDLEAYDDLVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIG
Sbjct: 74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133
Query: 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192
NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP
Sbjct: 134 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPG 193
Query: 193 RTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGAT 252
RTGQDIPPR I ++Q+PNLAGVKECVGN RVE YT NG+VVWSGNDD+CHD+RW++GAT
Sbjct: 194 RTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGAT 253
Query: 253 GVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVF 312
GVISVTSNLVPG+MR+LMF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVF
Sbjct: 254 GVISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVF 313
Query: 313 RLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 359
RLPYVPLP KR EFV LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct: 314 RLPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 360
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Length = 301 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 1e-86
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 17/290 (5%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ TA+ TP+ +G D LVN I NG ++VGGTTGE ++ +E + L H
Sbjct: 15 TIATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHV 74
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF---- 176
V+ V VI TGSN+T +I T++ VG+ A + + PYY K S EG+ HF
Sbjct: 75 VSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIA 134
Query: 177 DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGI 232
+S + P ++YNVP R+ I + +++ N+ +K+ G+ + T +
Sbjct: 135 EST-PL-PVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDF 192
Query: 233 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFPLI 286
V+SG+D A GA G++SV S+++ M+E++ G+ L+ L +
Sbjct: 193 AVYSGDDGLTLPAM-AVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVT 251
Query: 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336
+ LF P+P P+ TAL +G+ RLP +PL +E+R +++ I R
Sbjct: 252 DSLFMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIPR 301
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Length = 311 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 4e-86
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 17/297 (5%)
Query: 53 SAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE 112
S +D+K ++ITA TP+ DG + +A L+ + + +G+++ GTT E ++ DE
Sbjct: 2 SYQDLKECKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDE 61
Query: 113 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF-AVGMHAALHINPYYGKTSLEG 171
+ L V +I G+N TR++I ++ G A L I PYY K S EG
Sbjct: 62 ELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEG 121
Query: 172 LISHF----DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVE-- 225
+ HF D+ + P IIYN+P R ++ P + +A PN+ GVKEC +
Sbjct: 122 MYQHFKAIADAS-DL-PIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYL 179
Query: 226 -HYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SL 278
+ ++++G D A N GA GVISV S+ M E+ ++
Sbjct: 180 IEHKPEEFLIYTGEDGDAFHAM-NLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAI 238
Query: 279 NTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
K P + LF P+P P+ L +G RLP VP P+E + +V
Sbjct: 239 QRKFIPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVVVDGD 295
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Length = 293 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 3e-84
Identities = 54/280 (19%), Positives = 107/280 (38%), Gaps = 17/280 (6%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGH 119
+ +A+ + DG + + ++ I +G+ VGG+TGE ++S +E +
Sbjct: 6 GIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRI 65
Query: 120 TVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF--- 176
+ + +I GS + +EA+ + +G + P+Y K S + ++
Sbjct: 66 AKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTI 125
Query: 177 -DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNGI 232
I+Y++P TG ++ + ++P + GVK G+ +E
Sbjct: 126 IAET-GS-NMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNH 183
Query: 233 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLI 286
++W+G D+ A + G G I T N+ R++ GK + LI
Sbjct: 184 LIWAGFDEMMLPAA-SLGVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLI 242
Query: 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
E + + + L GV R P ++
Sbjct: 243 EGILANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVA 282
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Length = 315 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 6e-84
Identities = 63/304 (20%), Positives = 120/304 (39%), Gaps = 20/304 (6%)
Query: 38 NYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMI 97
++H + + I +I TP+ DG DL A + I G +
Sbjct: 6 HHHHHSSGLVPRGSHMSASIH--GIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIA 63
Query: 98 VGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157
G+TGEG +S E ++ T+ V I + +T + + + ++G A
Sbjct: 64 PLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAV 123
Query: 158 LHINPYYGKTSLEGLISHF----DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMA-QSPNL 212
+ + Y K + + H+ +++ + P ++YN P +G D+ +I + + N+
Sbjct: 124 MVLPISYWKLNEAEVFQHYRAVGEAI-GV-PVMLYNNPGTSGIDMSVELILRIVREVDNV 181
Query: 213 AGVKECVGN-DRVE---HYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRE 268
VKE G+ R+ + ++G + +A GA G S NL+P + +
Sbjct: 182 TMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLALEAF-VAGAKGWCSAAPNLIPTLNGQ 240
Query: 269 L---MFGGKNP---SLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQE 322
L + G +L + PL++++ + P + L G+ RLP L E
Sbjct: 241 LYQAVLDGDLEKARALFYRQLPLLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQALDTE 300
Query: 323 KRAE 326
Sbjct: 301 GCRY 304
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Length = 291 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 5e-83
Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 17/278 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I AI TP L DG D ++ + LV I G ++ GTTGE +S +EH +I +
Sbjct: 6 IVAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIR 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ +I TG+NSTREAI T+ +G AAL + PYY K + EGL H+ ++
Sbjct: 66 VANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEA 125
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGIVV 234
V + P I+YNVP RTG D+ +A+ PN+ G+K+ G+ R + + V
Sbjct: 126 V-EL-PLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALIDALNGKMAV 183
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
+SG+D+ + GA G ISVT+N+ P M E+ +LN K+ L
Sbjct: 184 YSGDDETAWELM-LLGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLHNI 242
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
LF E NPIP+ AL ++G++ RLP PL ++ R
Sbjct: 243 LFCESNPIPVKWALHEMGLIDTGIRLPLTPLAEQYREP 280
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Length = 314 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 1e-82
Identities = 94/278 (33%), Positives = 144/278 (51%), Gaps = 17/278 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ A+ TP+ GR D ++ LV+ + G ++ GTTGE + +EHI +I V+
Sbjct: 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVD 87
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ VI TG+NSTREA+ TE + G A L + PYY K + EG+ HF ++
Sbjct: 88 QVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEA 147
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGIVV 234
V ++ P I+YNVP RT D+ P + +++ PN+ G+KE G+ R + G +V
Sbjct: 148 V-AI-PQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLV 205
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
+SG+D + G G ISVT+N+ P M +L G ++N +L PL +
Sbjct: 206 YSGDDATAVELM-LLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKA 264
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
LF E NPIP+ AL ++G++ RLP L
Sbjct: 265 LFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEP 302
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A Length = 292 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 3e-82
Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 17/277 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
A+ TP+ + + +LEA VN + N A+ +IV GTT E ++ DE +++ ++
Sbjct: 8 GVALTTPF-TNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVID 66
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V VI TG+N T ++I A+ Q A+G A + I PYY KT+ GL+ HF D+
Sbjct: 67 LVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADA 126
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRV----EHYTGNGIV 233
V + P ++YNVPSRT I P + ++Q P + +K+ + + + + N
Sbjct: 127 V-KL-PVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRIDTNSFA 184
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL----MFGGKNPSLNTKLFPLIEWL 289
++SGNDD + G GVISV +N++P + L G + L+ L
Sbjct: 185 LYSGNDDNVVEYY-QRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTLLSAL 243
Query: 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+ NPIP+ + LG RLP V L
Sbjct: 244 SVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKV 280
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} Length = 297 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 4e-82
Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 17/278 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ A+ TP DG E DL++ I NG +G++ GTTGE +S +EH +I V
Sbjct: 12 LVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVK 71
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V VI TG+N+T EAI ++ G L + PYY K S EG+ HF ++
Sbjct: 72 HVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEA 131
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGIVV 234
S+ P IIYNVP RT + I +A+ PN+ GVKE GN + G VV
Sbjct: 132 T-SI-PMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELINRAPEGFVV 189
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
SG+D G GVI+V +N P + ++ G LN +L P+ +
Sbjct: 190 LSGDDHTALPFM-LCGGHGVITVAANAAPKLFADMCRAALQGDIALARELNDRLIPIYDT 248
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+F EP+P A++ LG P RLP VPL + +A+
Sbjct: 249 MFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTENGQAK 286
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Length = 300 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 7e-82
Identities = 56/287 (19%), Positives = 103/287 (35%), Gaps = 17/287 (5%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ +P +GR + L + I G G+ G+TGE + + ++ T+
Sbjct: 9 FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIE 68
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V V+ S S +A+ + +G L I Y + S+F D+
Sbjct: 69 AAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADA 128
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGIVV 234
V + P +IY P D+ VI +A+ P + +K+ N R+ + G+ + V
Sbjct: 129 V-EI-PVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTNTGRLLSIINRCGDALQV 186
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
+S + G G ++ + + P L + L KL+ + E
Sbjct: 187 FSASAHIPAAVML-IGGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRVNEA 245
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
+ + LA G P L E+R ++ +I
Sbjct: 246 FAKFNLAACIKAGLALQGYDVGDPIPPQAALTAEERKAVEKVLAEIA 292
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Length = 315 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 1e-81
Identities = 89/279 (31%), Positives = 132/279 (47%), Gaps = 18/279 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+TA+ TP+ +G D +A+ + V QI G G+ GTTGE ++ +EH +I V
Sbjct: 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVE 86
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V V+ GSNST EA+ + G A L + PYY + + GL +HF +
Sbjct: 87 QVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKA 146
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRVE---HYTGNGIV 233
+ S+ P IIYN+PSR+ D+ + + + N+ GVK+ G +R G V
Sbjct: 147 I-SI-PIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQREKCGKDFV 204
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIE 287
SG+D HG G ISV+SN+ P + +L LN L PL
Sbjct: 205 QLSGDDCTALGFN-AHGGVGCISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMPLNR 263
Query: 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+F EP+P + A A+LG+ + R P VPL +
Sbjct: 264 AVFIEPSPAGIKYAAAKLGLCGTIVRSPIVPLSDTTKKI 302
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Length = 297 | Back alignment and structure |
|---|
Score = 248 bits (637), Expect = 3e-81
Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 18/287 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ A+ TP+ +G+ D +A LV+ QI +GA G++ GTTGE ++ +EH ++
Sbjct: 6 LIAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAE 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V VI GSN+ EA+ + G A L + YY + S EGL HF D+
Sbjct: 65 QAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDA 124
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVE---HYTGNGIVV 234
+ + P I+YN+P R DI P + +A P + GVK+ + R+
Sbjct: 125 I-DI-PIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDATTDLARISRERMLINKPFSF 182
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
SG+D G G ISV++N+ P + ++ G ++ L PL E
Sbjct: 183 LSGDDMTAIAYN-ASGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHEA 241
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
LF+EP+P A + LG+ RLP VPL ++ +++ N++N++
Sbjct: 242 LFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINELY 288
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Length = 289 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 4e-80
Identities = 98/277 (35%), Positives = 142/277 (51%), Gaps = 17/277 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
AI TP+ + D + ++ +N I NG G++ GTTGE +S +EH +I V+
Sbjct: 6 YPAIITPF-KNKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVD 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V+VI GSN T EAI + VG A L I PYY K + EGL HF +S
Sbjct: 65 VVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES 124
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRV-EHYTGNGIVVW 235
+ ++ P ++YNVPSRT ++ P+ + +A+ N++ VKE N +V E I V
Sbjct: 125 I-NL-PIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKITVL 182
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEWL 289
SGND+ G GVISV +N+VP E+ G ++ KLFPL++ +
Sbjct: 183 SGNDELTLPII-ALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLMKAM 241
Query: 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
F E NPIP+ TAL +G RLP + +E +
Sbjct: 242 FIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKI 278
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Length = 294 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 9e-80
Identities = 97/279 (34%), Positives = 137/279 (49%), Gaps = 19/279 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I A+ TP+ +G D EA +L+ + NG + ++V GTTGE ++++EH +I V
Sbjct: 6 IVALITPF-KEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVK 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+KVI TG N+T EA+H T VG AL + PYY K + GL HF
Sbjct: 65 RAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE 124
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECVGN-DRVE---HYTGNGIV 233
V + P IIYN+PSRT +I + +A + N+ KE N DR+ G
Sbjct: 125 V-DI-PIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESFS 182
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIE 287
V SG+D GA GVISV +N++P ++EL G ++ L L +
Sbjct: 183 VLSGDDSLTLPMM-ALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFK 241
Query: 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
LF E NPIP+ TA LG+ FRLP + E +
Sbjct: 242 VLFIETNPIPVKTACWMLGMCEKEFRLPLTEMSPENENK 280
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Length = 332 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 1e-79
Identities = 66/318 (20%), Positives = 110/318 (34%), Gaps = 25/318 (7%)
Query: 37 PNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGM 96
N + + + A K L TP GR D+EA+ L+ + +
Sbjct: 15 ENLYFQGMPIKARETDMATRFK--GLSAFPITPADEAGRVDIEAFSALIARLDAAEVDSV 72
Query: 97 IVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156
+ G+TG ++ +E I ++ G+ T EA+ + A G A
Sbjct: 73 GILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADA 132
Query: 157 ALHINPYYGKTSLEGLISHF----DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNL 212
L Y + E HF + ++ P IYN P+ T ++ +A PN+
Sbjct: 133 LLLAPVSYTPLTQEEAYHHFAAVAGAT-AL-PLAIYNNPTTTRFTFSDELLVRLAYIPNI 190
Query: 213 AGVKECVGND--------RVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPG 264
+K + D R+ + + D C DA G SV + L+P
Sbjct: 191 RAIKMPLPADADYAGELARLRPKLSDDFAIGYSGDWGCTDA-TLAGGDTWYSVVAGLLPV 249
Query: 265 MMRELM---FGGKNP---SLNTKLFPLIEWLFQEPNPIPLNTALAQL-GVVRPVFRLPYV 317
+LM G L+ PL LF+E I + A A + + P +
Sbjct: 250 PALQLMRAAQAGNAEEAKRLDATFQPLWA-LFKEFGSIRVIYAAANILSLTVSEPPRPIL 308
Query: 318 PLPQEKRAEFVNLVNQIG 335
PL +R + +
Sbjct: 309 PLTSAERQRVEEALEALS 326
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Length = 293 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 3e-79
Identities = 64/291 (21%), Positives = 107/291 (36%), Gaps = 24/291 (8%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+IT I TP+ D R D E I G + + V GTTG G +S +E + +
Sbjct: 3 IITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVY 62
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLISHF---- 176
+ + K+I G + +AI + + P YY + S + L+ +F
Sbjct: 63 D---VTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLC 119
Query: 177 DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNGIV 233
+ P +YN P+ TG+DI + + GVK+ + N Y ++
Sbjct: 120 EVS-PH-PVYLYNYPTATGKDIDAK---VAKEIGCFTGVKDTIENIIHTLDYKRLNPNML 174
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFPLIE 287
V+SG+D + G G ++ SN +P + + K L +IE
Sbjct: 175 VYSGSDMLIATV-ASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIE 233
Query: 288 WLFQEPNPIPLNTALAQL-GVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
+ G R P PL E+ + + V I +
Sbjct: 234 ASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRAK 284
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Length = 343 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 1e-78
Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 23/284 (8%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I + T + DG+ D L++ I G +G+ G+ GE + +E + ++
Sbjct: 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAID 95
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V V+ TG + RE I ++ G + INPYY K S LI +F DS
Sbjct: 96 HVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADS 155
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRVE------HYTGN 230
V ++ P ++YN P+ TGQD+ P ++ T+A S N+ G+K+ + + +
Sbjct: 156 V-TL-PVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIHTVKGAHP 213
Query: 231 GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFP 284
V G DD + G G IS + N P + L G + L
Sbjct: 214 HFTVLCGYDDHLFNTL-LLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQ 272
Query: 285 LIEWLFQEPNPIPLN-TALAQLGV-VRPVFRLPYVPLPQEKRAE 326
+ + + + + A+ G V P PL + ++A+
Sbjct: 273 IPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQ 316
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Length = 286 | Back alignment and structure |
|---|
Score = 238 bits (611), Expect = 1e-77
Identities = 62/282 (21%), Positives = 111/282 (39%), Gaps = 25/282 (8%)
Query: 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGH 119
+ ++ + T + GR D E + + V G + + V GTTG G +S E + L
Sbjct: 1 MEIVAPVITTF-RGGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDA 59
Query: 120 TVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHF-- 176
+ A+ +VI S + EAI + + G A + PYY + S + +F
Sbjct: 60 ATS---AARRVIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRD 116
Query: 177 --DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNG 231
+V S+ P +YN P+ G+D+ R + + GVK+ + Y
Sbjct: 117 LCSAV-SI-PVFLYNYPAAVGRDVDAR---AAKELGCIRGVKDTNESLAHTLAYKRYLPQ 171
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFPL 285
V++G+D + GV++ ++N +P ++ + G SL L +
Sbjct: 172 ARVYNGSDSLVFASF-AVRLDGVVASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEI 230
Query: 286 IEWLFQEPNPIPLNTALAQL-GVVRPVFRLPYVPLPQEKRAE 326
+E + + G R P PL E++A
Sbjct: 231 VESARHIGYAAAVYELVEIFQGYEAGEPRGPVYPLDPEEKAW 272
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 283 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 9e-77
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 17/274 (6%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
++ I TP+ +GR D EA+ +L + +G++V G+ GEG ++ +E +
Sbjct: 2 ILPPIPTPFDREGRLDEEAFRELAQ-ALEPLVDGLLVYGSNGEGVHLTPEERARGLRAL- 59
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLISHFDSVL 180
+ + +A A + A G A L P YY + GL+ +++++
Sbjct: 60 ---RPRKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALA 116
Query: 181 SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNGIVVWSG 237
P +Y+VP T D+P + +A PN+ G+K+ G+ R+ Y V++G
Sbjct: 117 EKMPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSGDLSRIAFYQARLQEFRVYTG 176
Query: 238 NDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFPLIEWLFQ 291
+ A GA G I +NL P R L+ G+ L KLFPL + L +
Sbjct: 177 HAPTFLGAL-ALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQELQKKLFPLGDLLAK 235
Query: 292 EPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRA 325
P+ L AL LG+ R PY
Sbjct: 236 GGVPL-LKQALRHLGLPAGYPRPPYPAESPLWER 268
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Length = 288 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 3e-76
Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 26/293 (8%)
Query: 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGH 119
+ +I+ I TP+ G+ +++A + G + + V GTTG G +S DE +
Sbjct: 1 MEIISPIITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNA 60
Query: 120 TVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHF-- 176
+ + K+I GS + + + + + + +PYY + + L ++
Sbjct: 61 LYD---VTHKLIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEE 117
Query: 177 --DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNG 231
S IYN P+ TG DIPP ++ ++ + G+K+ + Y G
Sbjct: 118 IARIS-SH-SLYIYNYPAATGYDIPPSILKSLP----VKGIKDTNQDLAHSLEYKLNLPG 171
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPL 285
+ V++G++ + + GV++ +N +P ++ + + GK L + L
Sbjct: 172 VKVYNGSNTLIYYSL--LSLDGVVASFTNFIPEVIVKQRDLIKQGKLDDALRLQELINRL 229
Query: 286 IEWLFQEPNPIPLNTALAQL-GVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
+ L + + + + + G R P PL E+ + + R+
Sbjct: 230 ADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLKRK 282
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Length = 301 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 6e-76
Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 20/280 (7%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+TA+ TP+ +G+ D ++Y L+ QI NG + ++ GTTGE ++ +EH I V
Sbjct: 13 MTALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVE 71
Query: 123 -CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----D 177
C G VKV+ GSN+T EA+ + G L + PYY K + +GL H+
Sbjct: 72 TCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQ 131
Query: 178 SVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRVEH--YTGNGIV 233
SV + P ++YNVP RTG +I I + + N+ GVKE GN D+ ++
Sbjct: 132 SV-DI-PVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRMM 189
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIE 287
+ SG D + ++G GVISVTSNL+P M+ L +N +L+ + +
Sbjct: 190 LISGEDAINYPIL-SNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDELYNINK 248
Query: 288 WLFQEPNPIPLNTALAQLGVVRPV-FRLPYVPLPQEKRAE 326
LF E NPIP+ TA+ G++ + FRLP +E A+
Sbjct: 249 ILFCESNPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAK 288
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} PDB: 3s5n_A Length = 307 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 8e-75
Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 16/281 (5%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ + TP+ D ++ ++ G +V G+ GE ++ E + ++
Sbjct: 17 GIYPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRV 76
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP--YYGKTSLEGLISHFDS 178
+ ++ +G ST+ + T VG AA+ + P Y G+ S LI H+
Sbjct: 77 RQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTK 136
Query: 179 V--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNG 231
V LS P ++Y+VP+ TG D+P + T++Q PN+ G+ + G+ V
Sbjct: 137 VADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTRIGLIVHKTRKQD 196
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPL 285
V +G+ + + GA G + +N++ + +L L +L
Sbjct: 197 FQVLAGSAGFLMAS-YALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEP 255
Query: 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+ + L + G R P L +
Sbjct: 256 NAAVTRRFGIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEA 296
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Length = 292 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 4e-74
Identities = 92/279 (32%), Positives = 140/279 (50%), Gaps = 18/279 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF +
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVV 234
+ P I+YNVPSRTG D+ P + +A+ N+ G+ E GN ++++ + V+
Sbjct: 126 T-DL-PQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVL 183
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPLIEW 288
SG+D D +G GVISVT+N+ M ++ G +N +L PL
Sbjct: 184 LSGDDASALDFM-QYGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLMPLHNK 242
Query: 289 LFQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKRAE 326
LF EPNPIP+ A +LG+V RLP P+ R
Sbjct: 243 LFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRET 281
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Length = 303 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 5e-74
Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 16/289 (5%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
+ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 16 MAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAE 75
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+K+I + G ST E+ G A + P+Y S E H+ DS
Sbjct: 76 EAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDS 135
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY--TGNGIVVW 235
+ P ++YN+P+ +G + I+T+ P + + + G+ ++E +V++
Sbjct: 136 ADGL-PMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRREHPDLVLY 194
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFPLIEWL 289
+G D+ GA G I T N++ + ++ K L T+ +I+ L
Sbjct: 195 NGYDNIFASGL-LAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLL 253
Query: 290 FQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
+ L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 254 IKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQE 302
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} PDB: 1xxx_A Length = 304 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 9e-74
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 17/279 (6%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
L+TA+ TP+ DG D L N + G +G++V GTTGE + E I L+
Sbjct: 18 TLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAV 77
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF---- 176
+ G +VI G+ T +I + A G H L + PYY K GL +HF
Sbjct: 78 LEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVA 137
Query: 177 DSV-LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRV-EHYTGNGIV 233
D+ L P ++Y++P R+ I P I +A PN+ GV + + + G+
Sbjct: 138 DATEL---PMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDAKADLHSGAQIMADTGLA 194
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIE 287
+SG+D GATG ISV ++L G +REL+ +N + PL
Sbjct: 195 YYSGDDALNLPWL-RMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCN 253
Query: 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+ + L G+ RLP V E+
Sbjct: 254 AMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDA 292
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Length = 304 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 2e-73
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 15/278 (5%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ A+ TP+ G D+ A ++ + G + +++ GTTGE + E + L+
Sbjct: 19 TVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAV 78
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF---- 176
G K+I G+N+TR ++ E + G L + PYY K S EGL++HF
Sbjct: 79 REEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIA 138
Query: 177 DSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRV-EHYTGNGIVV 234
+ + P +Y++P R+G I + +++ P + V + G+ G+
Sbjct: 139 AAT-EV-PICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAKGDLVAATSLIKETGLAW 196
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEW 288
+SG+D G +G ISV + P +REL + +N KL PL+
Sbjct: 197 YSGDDPLNLVW-LALGGSGFISVIGHAAPTALRELYTSFEEGDLVRAREINAKLSPLVAA 255
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+ AL G+ RLP + +++
Sbjct: 256 QGRLGGVSLAKAALRLQGINVGDPRLPIMAPNEQELEA 293
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Length = 314 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 3e-73
Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 27/293 (9%)
Query: 63 ITAIKTPYL-PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
P+L D + DD V + NG E ++ G TGE ++ +E +
Sbjct: 16 SGINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVT 75
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----D 177
V+ G + AI + G + P + + G + ++ +
Sbjct: 76 ELVNGRATVVAGIGYS-VDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIE 134
Query: 178 SVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEH-----YTGNG 231
++ P+IIY + D+ +A L G+K + + RV +
Sbjct: 135 AL-DA-PSIIYFKDAHLSDDVIKE----LAPLDKLVGIKYAINDIQRVTQVMRAVPKSSN 188
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFP- 284
+ G ++ ++ GA G S N+ P L+ G + + P
Sbjct: 189 VAFICGTAEKWAPFFYHAGAVGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWEDVVPF 248
Query: 285 --LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
L N + + A+ QLG+ V R P PL R E L+
Sbjct: 249 EDLRAKHNNGNNVVIIKEAMEQLGLRAGVTREPVNPLSPNDRLELEELLKSWN 301
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Length = 292 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 4e-73
Identities = 91/279 (32%), Positives = 127/279 (45%), Gaps = 19/279 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
ITA+ TP+ D R D A DLV QI G+ G++ GTTGE +S EH ++ T+
Sbjct: 6 ITALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIK 64
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
V VI GSNST EAI G L ++PYY K + EG+ HF +
Sbjct: 65 TANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAA 124
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN----DRVEHYTGNGIV 233
++ P I+YN+P R+ +I + + + PN+ GV + GN G
Sbjct: 125 S-TI-PIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERMACGEDFN 182
Query: 234 VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPS------LNTKLFPLIE 287
+ +G D HG G ISVT+N+ P + + N L +L PL
Sbjct: 183 LLTGEDGTALGYM-AHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHR 241
Query: 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
LF E NP AL +LG +R RLP V + + E
Sbjct: 242 ALFLETNPAGAKYALQRLGRMRGDLRLPLVTISPSFQEE 280
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Length = 291 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 8e-73
Identities = 86/278 (30%), Positives = 133/278 (47%), Gaps = 18/278 (6%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
AI TP+ G D + +L+ I + + +IV GTTGE M+ E I ++
Sbjct: 7 GVAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVID 65
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ VI TGSN+T +I ++ ++G+ L I PYY KT+ +GL+ HF D+
Sbjct: 66 KVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDA 125
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVV 234
V S P IIYNVP RTG +I P + + + N+ V E GN +++ G+ + +
Sbjct: 126 V-ST-PIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASGNISQIAQIKALCGDKLDI 183
Query: 235 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEW 288
+SGNDDQ G GVISV +N++P + + + + L
Sbjct: 184 YSGNDDQIIPIL-ALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALTNA 242
Query: 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
LF E NPIP+ TA+ + + RLP + +
Sbjct: 243 LFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEI 280
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Length = 294 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 3e-71
Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 25/281 (8%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
A+ TP+ DG D++A + NG + + + GTTGEG + E ++ +
Sbjct: 8 SAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIA 67
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLISHF----D 177
A +++ +S +A + + G L P Y+ S +GL + F
Sbjct: 68 AGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFS 127
Query: 178 SVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQSP--NLAGVKECVGN-DRVEH--YTGNG 231
+ ++YN+PS T + ++ + + + GVK+ GN E
Sbjct: 128 KIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGD 187
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQ 291
+ + G++ G G IS +N + +R + ++ K P I L
Sbjct: 188 LAILIGDERDLARGV-RLGGQGAISGVANFLTQEVRAMA-------VDGKDDPRIVDLVV 239
Query: 292 EPNPIPLNTALAQL------GVVRPVFRLPYVPLPQEKRAE 326
E P+ A+ L + R P V + E R +
Sbjct: 240 ELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQ 280
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} Length = 316 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 5e-71
Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 27/293 (9%)
Query: 63 ITAIKTPYL-PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
TP+ DG D Y + V+ + NG + ++ G T E +S +E + TV
Sbjct: 16 SGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTV 75
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----D 177
V+ G T AI A G A + P + + G+ ++F +
Sbjct: 76 EYVHGRALVVAGIGYA-TSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIE 134
Query: 178 SVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEH-----YTGNG 231
++ P+++Y I RV+ +A NL GVK + + R +
Sbjct: 135 AL-DF-PSLVYFKDPE----ISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVRSIPEEHQ 188
Query: 232 IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGGKNP---SLNTKLFPL 285
I G ++ W+ GA G S NL+P E+ + N + + P
Sbjct: 189 IAWICGTAEKWAPFFWHAGAKGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWEDIVPF 248
Query: 286 IEW---LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
+ Q N + + A+ L V R P L E + L++
Sbjct: 249 EDLRGKYNQGNNVVVIKEAMEMLRQNAGVTRAPVNELSNEDKQLVTELLSSWK 301
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Length = 344 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 1e-70
Identities = 56/287 (19%), Positives = 97/287 (33%), Gaps = 26/287 (9%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
I A+ TP D D +A I +G ++ G+ G+ L++ ++ + + V
Sbjct: 31 IPALMTPCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVK 90
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLS 181
A + VI TG+ +T A+ VG + I + + + +HF ++LS
Sbjct: 91 ---AGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILS 147
Query: 182 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVE------HYTGNGI 232
P +IYN P A+ NL G KE G + + +
Sbjct: 148 AAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKEFGGPADMRYAAENITSRDDEV 207
Query: 233 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM-----FGGKNPSLNTKLFPLIE 287
+ G D N GATG I+ N++P + L + + L +
Sbjct: 208 TLMIGVDTAVVHGFVNCGATGAITGIGNVLPKEVIHLCKLSQAAAKGDADARARALELEQ 267
Query: 288 WLFQ----EPNPIPLN---TALAQLGVVRPVFRLPYV-PLPQEKRAE 326
L + P + + G L +R
Sbjct: 268 ALAVLSSFDEGPDLVLYFKYMMVLKGDKEYTLHFNETDALTDSQRGY 314
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Length = 306 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 6e-69
Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 22/282 (7%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
TAI TP+ +G DLE+Y+ LV Q+ NG +IV GTTGE ++ DE L+ T+
Sbjct: 18 GTAIVTPF-KNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLE 76
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
+ VI G+NST + + +Q +G + L + PYY K + EGL H+ +
Sbjct: 77 IVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER 136
Query: 179 VLSMGPTIIYNVPSRTGQDIPPR-VIHTMAQSPNLAGVKECVGN-------DRVEHYTGN 230
+ ++YNVP RTG ++ P A N+ G+ E + + +
Sbjct: 137 T-DL-GIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVSLTKQARS 194
Query: 231 GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFP 284
+VWSGNDD+ G GVISV SN+ P M EL + ++ KL P
Sbjct: 195 DFMVWSGNDDRTFYLL-CAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRP 253
Query: 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
L++ LF E NPIP+ AL +G + RLP VP ++
Sbjct: 254 LMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVEL 295
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Length = 313 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-67
Identities = 52/296 (17%), Positives = 102/296 (34%), Gaps = 26/296 (8%)
Query: 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122
TP+ DG+ D + D L + G EG+ V G GE + E + +
Sbjct: 13 FAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIK 72
Query: 123 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DS 178
S++VI + G + I P + E + ++F ++
Sbjct: 73 RAK-SMQVIVGVSAPGFAAMRRLARLSMDAGAAGVM-IAPPPSLRTDEQITTYFRQATEA 130
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVK-ECVGN--------DRVEHYT 228
+ P ++ + P + P+VI + + +K E + +
Sbjct: 131 IGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHEDWPGLEKITTLRGFQKDGS 190
Query: 229 GNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKL 282
+ + GN D G ++T P M+ +++ G+ +L
Sbjct: 191 LRPLSILCGNGGLFLDFEMERG--ADGAMTGYCFPDMLVDVVKLSKAGQRDLAHNLFDAH 248
Query: 283 FPLIEWLFQEPNPIPLN-TALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGR 336
PLI + Q+ + + L + G++ R P L R E L++++ R
Sbjct: 249 LPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLAR 304
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Length = 318 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 3e-66
Identities = 63/300 (21%), Positives = 111/300 (37%), Gaps = 30/300 (10%)
Query: 63 ITAIKTPYLP-DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
T + DL + + +G G+++ GT E L++ +E LI
Sbjct: 15 WCPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATAR 74
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLI-SHFDSV 179
G ++ G++STR+ + G + L + P Y+GK + +I S FD V
Sbjct: 75 KAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDV 134
Query: 180 --LSMGPTIIYNVPSR-TGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRV----EHYTGN 230
S P +IYN P G D+ +I T+A+ PN+ GVK + ++
Sbjct: 135 SCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPA 194
Query: 231 GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGGKNP---SLNTKLFP 284
V+ G D + G+ G I+ +N+ P + ++ GK L+ K
Sbjct: 195 AFSVFGGQSDFLIGGL-SVGSAGCIAAFANVFPKTVSKIYELYKAGKVDQAMELHRKAAL 253
Query: 285 LIEWLFQEPNPIPLNTALAQLG---------VVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
+ A A + R PY P + + E ++ ++
Sbjct: 254 AE--SPCKSGIATTKYAAAIFSAKAAGIEDAEEKLRPRKPYDPPSEAAKQEVRKVMAEVA 311
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Length = 309 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-62
Identities = 48/294 (16%), Positives = 101/294 (34%), Gaps = 22/294 (7%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ + T + G DL + V+ I G++G+ + E ++ DE +L
Sbjct: 11 GIFPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTI 70
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL---EGLISHFD 177
+ V VI T ST+ + + +G + + PY+G T + +
Sbjct: 71 LEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYA 130
Query: 178 SV---LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV-KECVGN-----DRVEHYT 228
V +++ P ++ + P+ P + + +A E G + +
Sbjct: 131 RVSDAIAI-PIMVQDAPASGTALSAPFLARMAREIEQVAYFXIETPGAANKLRELIRLGG 189
Query: 229 GNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKL 282
W G + A + A ++T P +R ++ +
Sbjct: 190 DAIEGPWDGEEAITLLA--DLHAGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAW 247
Query: 283 FPLIEWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIG 335
PLI ++ + + + GV+ R P L + RAE + + ++
Sbjct: 248 LPLINHENRQSGILTAKALMREGGVIASERPRHPMPELHPDTRAELLAIARRLD 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 100.0 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 100.0 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 100.0 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 100.0 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 100.0 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 100.0 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 100.0 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 100.0 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 100.0 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 100.0 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 100.0 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 100.0 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 100.0 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 100.0 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 100.0 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 100.0 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 100.0 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 100.0 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 100.0 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 100.0 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 100.0 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 100.0 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 100.0 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 100.0 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 100.0 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 100.0 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 100.0 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 100.0 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 100.0 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 100.0 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 100.0 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 100.0 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 100.0 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 100.0 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 100.0 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 100.0 | |
| 4dnh_A | 396 | Uncharacterized protein; structural genomics, PSI- | 97.9 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.43 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 97.43 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.34 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 97.34 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 97.31 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 97.25 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 97.21 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 97.19 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 97.09 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.99 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 96.93 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.88 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.77 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 96.76 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 96.65 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 96.62 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 96.34 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 96.34 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 95.93 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 95.74 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 95.72 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 95.63 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 95.62 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 95.55 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.53 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.36 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 95.31 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 95.23 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.21 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 95.04 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 95.02 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 94.64 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 94.63 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 94.61 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.57 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 94.5 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.44 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 94.39 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 94.33 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 94.16 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 94.16 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 94.02 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 93.96 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.85 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 93.76 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 93.7 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 93.68 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 93.65 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.63 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 93.57 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.43 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 93.42 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 93.41 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 93.26 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 93.24 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.22 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 93.19 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.13 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 93.11 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 92.96 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 92.92 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 92.9 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 92.87 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 92.84 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 92.74 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 92.73 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.72 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 92.72 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 92.71 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 92.7 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 92.66 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 92.55 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 92.53 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 92.52 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 92.52 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 92.51 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 92.5 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 92.36 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 92.32 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 92.31 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 92.21 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 92.16 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 92.14 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 92.1 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 91.81 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 91.76 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 91.76 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 91.64 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 91.41 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 91.22 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 91.2 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 91.18 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 91.06 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 91.01 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 90.98 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 90.93 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 90.91 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 90.8 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 90.74 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 90.73 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 90.69 | |
| 3kdn_A | 444 | Rubisco, ribulose bisphosphate carboxylase; ribulo | 90.63 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 90.53 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.48 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 90.44 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 90.43 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 90.29 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 90.1 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 89.97 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 89.95 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 89.94 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 89.92 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 89.85 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 89.8 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 89.77 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 89.63 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 89.6 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 89.49 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 89.37 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 89.32 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 89.18 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 89.14 | |
| 1wdd_A | 477 | Ribulose bisphosphate carboxylase large chain; rub | 88.96 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 88.92 | |
| 3nwr_A | 432 | A rubisco-like protein; lyase; HET: KCX; 1.50A {Bu | 88.92 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 88.89 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 88.87 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 88.84 | |
| 4f0h_A | 493 | Ribulose bisphosphate carboxylase large chain; alp | 88.83 | |
| 3qfw_A | 378 | Ribulose-1,5-bisphosphate carboxylase/oxygenase L | 88.83 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 88.74 | |
| 1bwv_A | 493 | Rubisco, protein (ribulose bisphosphate carboxylas | 88.73 | |
| 3bld_A | 386 | Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco | 88.65 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 88.57 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 88.34 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 88.34 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 88.32 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 88.23 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 88.18 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 88.13 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 88.05 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 87.84 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 87.74 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 87.74 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 87.71 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 87.68 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 87.6 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 87.59 | |
| 2d69_A | 430 | Ribulose bisphosphate carboxylase; alpha/beta barr | 87.57 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 87.48 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 87.46 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 87.42 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 87.38 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 87.38 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 87.34 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 87.2 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 87.12 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 87.08 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 87.07 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 87.05 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 86.94 | |
| 2oem_A | 413 | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; | 86.91 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 86.81 | |
| 2ash_A | 381 | Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan | 86.72 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 86.71 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 86.67 | |
| 2zvi_A | 425 | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; | 86.61 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 86.44 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 86.42 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 86.26 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 86.22 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 86.22 | |
| 3fk4_A | 414 | Rubisco-like protein; structural genomics, target | 86.18 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 86.12 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 85.95 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 85.95 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 85.94 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 85.87 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 85.87 | |
| 2qyg_A | 452 | Ribulose bisphosphate carboxylase-like protein 2; | 85.86 | |
| 1ykw_A | 435 | Rubisco-like protein; beta-alpha-barrel, unknown f | 85.81 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 85.79 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 85.69 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 85.65 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 85.45 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 85.43 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 85.28 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 85.23 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 85.2 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 85.09 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 85.05 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 85.03 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 84.97 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 84.94 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 84.89 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 84.85 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 84.85 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 84.76 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 84.7 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 84.69 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 84.54 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 84.54 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 84.41 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 84.33 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 84.32 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 84.08 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 83.99 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 83.92 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 83.85 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 83.84 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 83.69 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 83.66 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 83.62 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 83.58 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 83.56 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 83.21 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 83.14 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 83.12 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 82.99 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 82.95 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 82.92 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 82.83 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 82.81 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 82.54 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 82.49 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 82.48 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 82.34 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 82.26 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 82.24 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 82.15 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 82.06 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 81.93 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 81.92 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 81.85 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 81.84 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 81.83 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 81.74 | |
| 3tb6_A | 298 | Arabinose metabolism transcriptional repressor; tr | 81.73 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 81.7 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 81.7 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 81.69 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 81.62 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 81.4 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 81.39 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 81.35 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 81.34 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 81.32 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 81.24 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 81.16 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 81.02 | |
| 2d73_A | 738 | Alpha-glucosidase SUSB; glycoside hydrolase family | 80.83 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 80.74 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 80.73 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 80.67 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 80.57 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 80.49 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 80.46 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 80.18 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 80.01 |
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-86 Score=647.05 Aligned_cols=344 Identities=80% Similarity=1.300 Sum_probs=299.1
Q ss_pred cccccCCCCCCC---CCCCcccccCCCCCCCccccccccCCcccccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCC
Q 018253 16 PVSVSCTGKNRK---WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG 92 (359)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~G 92 (359)
|...-++..|-+ -|+|+|++++++|+||+|.++||+++++||++.|+++|++|||++||+||+++++++++|++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~G 93 (360)
T 4dpp_A 14 PLLGLDSTENLYFQGIDPFTAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNG 93 (360)
T ss_dssp ----------------------------------------CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTT
T ss_pred cccccccccceeeeccchhhhhhccccccccCCHhHhhccChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcC
Confidence 455555555555 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH
Q 018253 93 AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGL 172 (359)
Q Consensus 93 v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l 172 (359)
++||+++|||||+++||.+||+++++.+++.++||+|||+|+|+++|+++++++++|+++|||++|++||||++++++++
T Consensus 94 v~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl 173 (360)
T 4dpp_A 94 AEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGL 173 (360)
T ss_dssp CCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH
T ss_pred CCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCchhhHhhhhCCceEEEecCCchhhhhhhhcCCc
Q 018253 173 ISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGAT 252 (359)
Q Consensus 173 ~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~ 252 (359)
++||++|+++.||++||+|++||++++++++.+|+++|||+|||++++|.++.++.+++|.||+|.|++++...+.+|++
T Consensus 174 ~~hf~~IA~a~PiilYNiP~rTg~~ls~e~l~~La~~pnIvGIKdssgd~~i~~~~~~~f~v~sG~D~~~l~~~l~~Ga~ 253 (360)
T 4dpp_A 174 IAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGAT 253 (360)
T ss_dssp HHHHHTTGGGSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCHHHHHHHHHTTCCEEECCGGGHHHHHHHSCCC
T ss_pred HHHHHHHHHhCCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEeCCCcHHHHHhhCCCEEEEeCChHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999998777666788999999998887655789999
Q ss_pred eeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018253 253 GVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVN 332 (359)
Q Consensus 253 G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~ 332 (359)
|+||+++|++|+.++++|++|+++++|+++.+++++++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++
T Consensus 254 G~Is~~aNv~P~~~~~l~~aG~a~~l~~~l~pl~~~l~~~~~p~~vK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~ 333 (360)
T 4dpp_A 254 GVISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVK 333 (360)
T ss_dssp EEEESGGGTCHHHHHHHHHSCCCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTSSCSEEETTCCCCCHHHHHHHHHHHH
T ss_pred EEEccchhhcHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HcCcccccccccccccCCCcccccccC
Q 018253 333 QIGRENFVGEKDVQVLDDDDFILVDRY 359 (359)
Q Consensus 333 ~lgl~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
++|+..|.|.+++++||||||+|+|||
T Consensus 334 ~~gl~~~~~~~~~~~~~~~~~~~~~~~ 360 (360)
T 4dpp_A 334 EIGREHFVGEKDVQALDDDDFILIGRY 360 (360)
T ss_dssp HHCGGGSSSSSCCCCCCGGGCEEESCC
T ss_pred HcCCcccCCcccceeecccceEEeecC
Confidence 999999999999999999999999998
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-69 Score=524.80 Aligned_cols=279 Identities=32% Similarity=0.498 Sum_probs=264.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++
T Consensus 22 ~~~Gv~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 101 (315)
T 3si9_A 22 MLKGAVTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSN 101 (315)
T ss_dssp CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred cCCceeEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivG 214 (359)
||+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|++ +|||+|
T Consensus 102 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvg 181 (315)
T 3si9_A 102 STSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIG 181 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999999999999999999999997 79999999999999999999999997 999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+..+++|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| |+++|+++.+
T Consensus 182 iKdssgd~~~~~~l~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 260 (315)
T 3si9_A 182 VKDATGKIERASEQREKCGKDFVQLSGDDCTALGF-NAHGGVGCISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMP 260 (315)
T ss_dssp EEECSCCTHHHHHHHHHHCSSSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEecCHHHHHHH-HHcCCCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999983 3 4444578999999999988865 8999999999999999999999996 575 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++|+.
T Consensus 261 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~l~ 313 (315)
T 3si9_A 261 LNRAVFIEPSPAGIKYAAAKLGLCGTIVRSPIVPLSDTTKKIIDEALYHAGLL 313 (315)
T ss_dssp HHHHTTSSSTTHHHHHHHHHTTSSCCCCCTTSCCCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCChHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHCCCc
Confidence 99999888899999999999999889999999999999999999999999864
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=520.34 Aligned_cols=278 Identities=35% Similarity=0.549 Sum_probs=262.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.++||+|||+|+|++
T Consensus 7 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 86 (297)
T 3flu_A 7 MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGAN 86 (297)
T ss_dssp CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred ccCeeEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+||
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgi 166 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGV 166 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 167 Kdssgd~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 245 (297)
T 3flu_A 167 KEASGNIGSNIELINRAPEGFVVLSGDDHTALPF-MLCGGHGVITVAANAAPKLFADMCRAALQGDIALARELNDRLIPI 245 (297)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEECCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHhcCCCeEEEECcHHHHHHH-HhCCCCEEEechHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 3 3444568999999999988865 8999999999999999999999996 475 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++|+
T Consensus 246 ~~~l~~~~~~~~~K~al~~~G~~~~~~R~Pl~~l~~~~~~~l~~~l~~~~~ 296 (297)
T 3flu_A 246 YDTMFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTENGQAKVRAALKASGQ 296 (297)
T ss_dssp HTTTTSSSTTHHHHHHHHHTTSCCCCCCTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998888889999999999999976569999999999999999999999886
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-70 Score=525.06 Aligned_cols=279 Identities=34% Similarity=0.577 Sum_probs=264.7
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.++||+|||+|+|++
T Consensus 23 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 102 (314)
T 3qze_A 23 MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGAN 102 (314)
T ss_dssp CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCCeeEEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+||
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 182 (314)
T 3qze_A 103 STREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGI 182 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 183 Kdssgd~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~Ga~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 261 (314)
T 3qze_A 183 KEATGDLQRAKEVIERVGKDFLVYSGDDATAVEL-MLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPL 261 (314)
T ss_dssp EECSCCHHHHHHHHHHSCTTSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHcCCCeEEEecChHHHHHH-HHCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 3 3444568899999999988765 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++|+.
T Consensus 262 ~~~l~~~~~~~~~K~al~~~G~~~~~~R~Pl~~l~~~~~~~l~~~l~~~~l~ 313 (314)
T 3qze_A 262 HKALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVL 313 (314)
T ss_dssp HHHTTSSSTTHHHHHHHHHTTSSCSBCCTTSCCCCGGGHHHHHHHHHHTTCC
T ss_pred HHHHHccCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 9988888899999999999999888899999999999999999999999874
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=520.65 Aligned_cols=278 Identities=32% Similarity=0.550 Sum_probs=262.5
Q ss_pred ccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 57 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 57 ~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
++++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|+
T Consensus 11 ~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 90 (301)
T 1xky_A 11 IDFGTIATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS 90 (301)
T ss_dssp CCCCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCCceEEeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|
T Consensus 91 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvg 170 (301)
T 1xky_A 91 NNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVA 170 (301)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|++++++|+ +|| ++++|+++.+
T Consensus 171 iKdssgd~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 249 (301)
T 1xky_A 171 IKDAGGDVLTMTEIIEKTADDFAVYSGDDGLTLPA-MAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVR 249 (301)
T ss_dssp EEECSSCHHHHHHHHHHSCTTCEEEESSGGGHHHH-HHTTCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHhcCCCeEEEECcHHHHHHH-HHcCCCEEEcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999983 3 3344467899999999988865 8999999999999999999999986 475 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+++.++..++++.+|++|+++|++.+.+|+|+.+++++++++|++++++++
T Consensus 250 l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 300 (301)
T 1xky_A 250 VTDSLFMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIP 300 (301)
T ss_dssp HHHHTTSSSTTHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Confidence 999888888899999999999998899999999999999999999999875
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=518.78 Aligned_cols=277 Identities=36% Similarity=0.584 Sum_probs=262.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 2 ~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 81 (291)
T 3tak_A 2 IQGSIVAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANS 81 (291)
T ss_dssp CCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CceeEeeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|||
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 161 (291)
T 3tak_A 82 TREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIK 161 (291)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|++++++|+ +|| ++++|+++.+++
T Consensus 162 ~ssgd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 240 (291)
T 3tak_A 162 DATGDVPRGKALIDALNGKMAVYSGDDETAWEL-MLLGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLH 240 (291)
T ss_dssp ECSCCHHHHHHHHHHHTTSSEEEECCHHHHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred eCCCCHHHHHHHHHHcCCCeEEEECcHHHHHHH-HHCCCCEEEechhhhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3444578999999999988865 8999999999999999999999986 575 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++|+
T Consensus 241 ~~l~~~~~~~~~K~al~~~G~~~~~~R~Pl~~l~~~~~~~l~~~l~~~~~ 290 (291)
T 3tak_A 241 NILFCESNPIPVKWALHEMGLIDTGIRLPLTPLAEQYREPLRNALKDAGI 290 (291)
T ss_dssp HHTTSSSTTHHHHHHHHHTTSSCSCCCTTSCSCCGGGHHHHHHHHHHTTC
T ss_pred HHHhccCChHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98888889999999999999976569999999999999999999999886
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=521.03 Aligned_cols=277 Identities=19% Similarity=0.227 Sum_probs=262.5
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++
T Consensus 4 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (300)
T 3eb2_A 4 DFHGVFPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAST 83 (300)
T ss_dssp CCCEEEEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEES
T ss_pred cCCeeEEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
||+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+||
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 163 (300)
T 3eb2_A 84 SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYI 163 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 164 Kdssgd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 242 (300)
T 3eb2_A 164 KDASTNTGRLLSIINRCGDALQVFSASAHIPAAV-MLIGGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRV 242 (300)
T ss_dssp EECSSBHHHHHHHHHHHGGGSEEEECTTSCHHHH-HHTTCCEEEEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHTHH
T ss_pred EcCCCCHHHHHHHHHHcCCCeEEEeCcHHHHHHH-HhCCCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 3 3444567899999999988765 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++.
T Consensus 243 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 292 (300)
T 3eb2_A 243 NEAFAKFNLAACIKAGLALQGYDVGDPIPPQAALTAEERKAVEKVLAEIA 292 (300)
T ss_dssp HHHHTTSCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999888899999999999998899999999999999999999999874
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-69 Score=518.53 Aligned_cols=283 Identities=25% Similarity=0.404 Sum_probs=263.9
Q ss_pred cccCCcccccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc
Q 018253 49 KNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV 128 (359)
Q Consensus 49 ~~~~~~~~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv 128 (359)
-++++.++ ++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+
T Consensus 9 ~~~~~~~~--~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grv 86 (304)
T 3cpr_A 9 TAKTGVEH--FGTVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRA 86 (304)
T ss_dssp SCCTTHHH--HCSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTS
T ss_pred hhhccCCC--CCceEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCC
Confidence 34555554 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 129 KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 129 pViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
|||+|+|++||+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++|+++++.+|
T Consensus 87 pviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 166 (304)
T 3cpr_A 87 KLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRL 166 (304)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHH
T ss_pred cEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 799999999999999999999999
Q ss_pred hcCCCeEEEeccCchh-hH---hhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cH
Q 018253 207 AQSPNLAGVKECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NP 276 (359)
Q Consensus 207 a~~pnivGiK~ss~d~-~l---~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~ 276 (359)
+++|||+|||++++|. ++ .+.. +|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++
T Consensus 167 a~~pnIvgiKdssgd~~~~~~~~~~~--~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~ 243 (304)
T 3cpr_A 167 SELPTILAVXDAKGDLVAATSLIKET--GLAWYSGDDPLNLVW-LALGGSGFISVIGHAAPTALRELYTSFEEGDLVRAR 243 (304)
T ss_dssp TTSTTEEEEEECSCCHHHHHHHHHHH--CCEEEECSGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCCEEEEecCCCCHHHHHHHHHhc--CEEEEECcHHHHHHH-HHCCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999983 33 3333 899999999988875 8999999999999999999999986 475 67
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 277 SLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 277 ~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
++|+++.++++.++..+++..+|++|+++|+..+.+|+|+.+++++++++|+++++++|+
T Consensus 244 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 303 (304)
T 3cpr_A 244 EINAKLSPLVAAQGRLGGVSLAKAALRLQGINVGDPRLPIMAPNEQELEALREDMKKAGV 303 (304)
T ss_dssp HHHHHTHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 899999999998887778899999999999988999999999999999999999999875
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-69 Score=520.35 Aligned_cols=282 Identities=20% Similarity=0.330 Sum_probs=262.4
Q ss_pred cccccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 54 AEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 54 ~~~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
++.++++|+|++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+|||+|
T Consensus 10 ~~~~~~~Gi~~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaG 89 (307)
T 3s5o_A 10 GKKVDIAGIYPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAG 89 (307)
T ss_dssp --CCCCCEEECBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEE
T ss_pred CCCCCCCceEEeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+|+++|+++++++++|+++|||++|++||||++ ++++++++||++|+++ +||++||+|++||++|+++++.+|+++
T Consensus 90 vg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 169 (307)
T 3s5o_A 90 SGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQH 169 (307)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcC
Confidence 999999999999999999999999999999986 7999999999999997 799999999999999999999999999
Q ss_pred CCeEEEeccCchh-hH---hhhh-CCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHH
Q 018253 210 PNLAGVKECVGND-RV---EHYT-GNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL 278 (359)
Q Consensus 210 pnivGiK~ss~d~-~l---~~~~-~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l 278 (359)
|||+|||++++|. ++ .+.. +++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++
T Consensus 170 pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l 248 (307)
T 3s5o_A 170 PNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMAS-YALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKL 248 (307)
T ss_dssp TTEEEEEECSCCHHHHHHHHHHTTTSSCEEEESSGGGHHHH-HHHTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCcHHHHHHH-HHcCCCEEEechhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999983 33 3333 47899999999988865 8999999999999999999999986 575 6789
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 279 NTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 279 ~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
|+++.++...++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++|+
T Consensus 249 ~~~l~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g~ 306 (307)
T 3s5o_A 249 QHRLIEPNAAVTRRFGIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDFTSNGW 306 (307)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHHHHHTSCCCCCCTTSCCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999888777777888999999999998999999999999999999999999886
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-69 Score=521.87 Aligned_cols=278 Identities=23% Similarity=0.346 Sum_probs=263.1
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++
T Consensus 24 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 103 (315)
T 3na8_A 24 SIHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDL 103 (315)
T ss_dssp CCCEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred ccCceEEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH-hcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM-AQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L-a~~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+| +++|||+|
T Consensus 104 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvg 183 (315)
T 3na8_A 104 TTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTM 183 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999 79999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+..+++|.||+|.|+++++. +..|++|+||+++|++|++++++|+ +|| |+++|+++.+
T Consensus 184 iKdssgd~~~~~~~~~~~~~~f~v~~G~D~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 262 (315)
T 3na8_A 184 VKESTGDIQRMHKLRLLGEGRVPFYNGCNPLALEA-FVAGAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLP 262 (315)
T ss_dssp EEECSSCHHHHHHHHHHTTTCSCEEECCGGGHHHH-HHHTCSEEEESGGGTCHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEeCchHHHHHH-HHCCCCEEEechhhhCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999983 3 3444567899999999988765 8999999999999999999999986 565 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++|.
T Consensus 263 l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g~ 314 (315)
T 3na8_A 263 LLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQALDTEGCRYLQGLLEELRG 314 (315)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHccCcHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999988888999999999999988999999999999999999999999863
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-69 Score=519.16 Aligned_cols=277 Identities=32% Similarity=0.534 Sum_probs=263.0
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~ 136 (359)
+++|++++++||| +||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.++| |+|||+|+|+
T Consensus 8 ~~~Gv~~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~ 86 (301)
T 3m5v_A 8 IIIGAMTALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGS 86 (301)
T ss_dssp CCCEEEEECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCC
T ss_pred cCCceeEeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 4899999999999 9999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC-CCeE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLA 213 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~-pniv 213 (359)
++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++ |||+
T Consensus 87 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pniv 166 (301)
T 3m5v_A 87 NATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIY 166 (301)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999999999999997 799999999999999999999999987 9999
Q ss_pred EEeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHH
Q 018253 214 GVKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLF 283 (359)
Q Consensus 214 GiK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~ 283 (359)
|||++++|. + +.+.. ++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.
T Consensus 167 giKdssgd~~~~~~~~~~~-~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~ 244 (301)
T 3m5v_A 167 GVKEASGNIDKCVDLLAHE-PRMMLISGEDAINYPI-LSNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDELY 244 (301)
T ss_dssp EEEECSSCHHHHHHHHHHC-TTSEEEECCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTH
T ss_pred EEEeCCCCHHHHHHHHHhC-CCeEEEEccHHHHHHH-HHcCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999983 3 44444 8899999999988865 8999999999999999999999996 475 678999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHcCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 284 PLIEWLFQEPNPIPLNTALAQLGVV-RPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 284 ~l~~~l~~~~~~~~~K~al~~~G~~-~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
++++.++..+++..+|++|+++|++ .+.+|+|+.+++++++++|+++++++|+.
T Consensus 245 ~l~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~l~ 299 (301)
T 3m5v_A 245 NINKILFCESNPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKKYKIK 299 (301)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHTTSSSCCCCCTTCCCCCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHhccCCHHHHHHHHHHCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHCcCc
Confidence 9999998888999999999999998 89999999999999999999999999875
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-69 Score=516.66 Aligned_cols=277 Identities=34% Similarity=0.552 Sum_probs=260.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+|++|
T Consensus 2 ~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 81 (292)
T 2ojp_A 2 FTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANA 81 (292)
T ss_dssp CCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CCceeeeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|||
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 161 (292)
T 2ojp_A 82 TAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIX 161 (292)
T ss_dssp HHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHTSTTEEEC-
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCchh-hH---hhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~l---~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. ++ .+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 162 ~s~gd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 240 (292)
T 2ojp_A 162 EATGNLTRVNQIKELVSDDFVLLSGDDASALDF-MQYGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLMPLH 240 (292)
T ss_dssp CCSCCTHHHHHHHTTSCTTSBCEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEECcHHHHHHH-HHCCCcEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 33 333456899999999988865 8999999999999999999999986 575 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCC-CCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~-g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+.++..+++..+|++|+++|++. +.+|+|+.+++++++++++++++++++
T Consensus 241 ~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 291 (292)
T 2ojp_A 241 NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGL 291 (292)
T ss_dssp HHTTSSSTTHHHHHHHHHTTSSSCCCCCTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98888888999999999999987 899999999999999999999999875
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-69 Score=520.50 Aligned_cols=279 Identities=28% Similarity=0.440 Sum_probs=263.8
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++
T Consensus 15 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~ 94 (304)
T 3l21_A 15 RLGTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTY 94 (304)
T ss_dssp HHCSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCCceEEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
+|+++++++++|+++|||+++++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+||
T Consensus 95 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 174 (304)
T 3l21_A 95 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGV 174 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eccCchh-hHhhh-hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHH
Q 018253 216 KECVGND-RVEHY-TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIE 287 (359)
Q Consensus 216 K~ss~d~-~l~~~-~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~ 287 (359)
|++++|. ++.++ ..++|.+|+|.|+++++. +..|++|+||+++|++|++++++|+ +|| ++++|+++.++++
T Consensus 175 Kdssgd~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~Ga~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 253 (304)
T 3l21_A 175 XDAKADLHSGAQIMADTGLAYYSGDDALNLPW-LRMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCN 253 (304)
T ss_dssp EECSCCHHHHHHHHHHHCCEEEESSGGGHHHH-HHHTCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred ECCCCCHHHHHHHhcCCCeEEEeCchHHHHHH-HHcCCCEEEecHHhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999984 43332 356899999999988865 8999999999999999999999986 475 6789999999999
Q ss_pred HHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 288 ~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++|+.
T Consensus 254 ~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~l~ 303 (304)
T 3l21_A 254 AMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAASVL 303 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHTTSC
T ss_pred HHHccCCHHHHHHHHHhcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 98888889999999999999889999999999999999999999999864
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-69 Score=520.44 Aligned_cols=281 Identities=31% Similarity=0.548 Sum_probs=266.2
Q ss_pred cccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 56 DIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 56 ~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
+++++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++++++|+|||+|+|
T Consensus 5 ~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg 84 (311)
T 3h5d_A 5 DLKECKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG 84 (311)
T ss_dssp HHTTCCEEEECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC
T ss_pred ccccCceEEeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCe
Q 018253 136 SNSTREAIHATEQGFAVGM-HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNL 212 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Ga-dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pni 212 (359)
+++|+++++++++|+++|+ |++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||
T Consensus 85 ~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnI 164 (311)
T 3h5d_A 85 TNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNI 164 (311)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTE
T ss_pred CcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCE
Confidence 9999999999999999997 9999999999999999999999999997 799999999999999999999999999999
Q ss_pred EEEeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 213 AGVKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 213 vGiK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
+|||+++ |. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++
T Consensus 165 vgiKdss-d~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~Ga~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l 242 (311)
T 3h5d_A 165 IGVKECT-SLANMAYLIEHKPEEFLIYTGEDGDAFHA-MNLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKF 242 (311)
T ss_dssp EEEEECS-CHHHHHHHHHHCCSSCEEEECCGGGHHHH-HHHTCCEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEeCC-CHHHHHHHHHHcCCCEEEEECcHHHHHHH-HHcCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999 83 3 3344567899999999988865 8999999999999999999999986 575 67899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCccc
Q 018253 283 FPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGREN 338 (359)
Q Consensus 283 ~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~~ 338 (359)
.++++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++|+++++++
T Consensus 243 ~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 298 (311)
T 3h5d_A 243 IPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVVVDGDYEA 298 (311)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTSCCCCCCTTCCCCCHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHccCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHccchh
Confidence 99999999988999999999999998899999999999999999999999999886
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-69 Score=514.55 Aligned_cols=277 Identities=35% Similarity=0.555 Sum_probs=261.6
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||+ ||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.++||+|||+|+|++|
T Consensus 2 ~~Gv~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 80 (294)
T 2ehh_A 2 FQGSIVALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNA 80 (294)
T ss_dssp CCEEEEECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSC
T ss_pred CCceeeeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGi 215 (359)
|+++++++++|+++|||++|++||||+++|++++++||++|+++ +||++||+|++||++++++++.+|+ ++|||+||
T Consensus 81 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (294)
T 2ehh_A 81 THEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVAS 160 (294)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999 99999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 161 Kds~gd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 239 (294)
T 2ehh_A 161 KESTPNMDRISEIVKRLGESFSVLSGDDSLTLPM-MALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDL 239 (294)
T ss_dssp EECCSCHHHHHHHHHHHCTTSEEEESSGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHhcCCCeEEEECcHHHHHHH-HHCCCCEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 3 3344567899999999988864 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++++++++++++.
T Consensus 240 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 291 (294)
T 2ehh_A 240 FKVLFIETNPIPVKTACWMLGMCEKEFRLPLTEMSPENENKLREVLKKYNLP 291 (294)
T ss_dssp HHHTTSSSTTHHHHHHHHHTTSSCSCCCTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 9988877889999999999999889999999999999999999999998864
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-69 Score=515.20 Aligned_cols=276 Identities=31% Similarity=0.501 Sum_probs=259.9
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++|| ||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 3 ~~Gv~~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~ 81 (291)
T 3a5f_A 3 FKGSGVAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNN 81 (291)
T ss_dssp CCEEEEECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CCceeeeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCccc
Confidence 6899999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||+++|++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|||
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 161 (291)
T 3a5f_A 82 TAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVX 161 (291)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 162 ~s~gd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 240 (291)
T 3a5f_A 162 EASGNISQIAQIKALCGDKLDIYSGNDDQIIPI-LALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALT 240 (291)
T ss_dssp ECSCCHHHHHHHHHHHGGGSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCeEEEeCcHHHHHHH-HHCCCCEEEecHHHhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3334457899999999988875 8999999999999999999999986 575 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++++++++++|+
T Consensus 241 ~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 290 (291)
T 3a5f_A 241 NALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNL 290 (291)
T ss_dssp HHTTSSSTTHHHHHHHHHTTCCCCCCCTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHhCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98888888999999999999988999999999999999999999999875
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-69 Score=515.60 Aligned_cols=278 Identities=31% Similarity=0.497 Sum_probs=261.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++||| +||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++|
T Consensus 2 ~~Gv~~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 80 (297)
T 2rfg_A 2 FRGSLIAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNN 80 (297)
T ss_dssp CCEEEEECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSS
T ss_pred CceEEEeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCC
Confidence 689999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|||
T Consensus 81 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK 160 (297)
T 2rfg_A 81 PVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVK 160 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 161 ds~gd~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 239 (297)
T 2rfg_A 161 DATTDLARISRERMLINKPFSFLSGDDMTAIAY-NASGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLH 239 (297)
T ss_dssp ECSCCTTHHHHHHTTCCSCCEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCEEEEeCcHHHHHHH-HHCCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3333456899999999988864 8999999999999999999999986 475 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCccc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGREN 338 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~~ 338 (359)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++++..
T Consensus 240 ~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 291 (297)
T 2rfg_A 240 EALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINELYRLE 291 (297)
T ss_dssp HHHHSSSTTHHHHHHHHHTTSSCCCCCTTSCCCCHHHHHHHHHHHHHHCC--
T ss_pred HHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcchhh
Confidence 9888888899999999999998899999999999999999999999999764
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=512.28 Aligned_cols=276 Identities=21% Similarity=0.315 Sum_probs=259.0
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++|++++++|||++||+||+++++++++|+++ +|++||+++|||||+++||.+||+++++.+++.++||+|||+|+|+
T Consensus 3 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 3 DLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCCceEEeeEcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|
T Consensus 83 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvg 162 (293)
T 1f6k_A 83 VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLG 162 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 215 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 215 iK~ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
||++++|. ++.++ ..++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 163 iK~s~gd~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 241 (293)
T 1f6k_A 163 VKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDL 241 (293)
T ss_dssp EEECSCCHHHHHHHHHHCTTSEEEECCGGGHHHH-HHTTCSEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHhCCCeEEEECcHHHHHHH-HHCCCcEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33322 146899999999988764 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCC-CCCCHHHHHHHHHHHHHc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPY-VPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl-~~l~~e~~~~i~~~l~~l 334 (359)
++.++..+++..+|++|+++|++.+.+|+|+ .+++++++++|+++++++
T Consensus 242 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~~l~~~~~~~l~~~l~~~ 291 (293)
T 1f6k_A 242 IEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVAKAKDLKAKF 291 (293)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCCBCCCTTSCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 9988776678999999999999888999999 999999999999999874
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=510.78 Aligned_cols=274 Identities=36% Similarity=0.579 Sum_probs=259.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||+ ||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 2 ~~Gv~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 80 (289)
T 2yxg_A 2 FKGVYPAIITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNC 80 (289)
T ss_dssp CCEEEEBCCCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSS
T ss_pred CCceeeeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGi 215 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+ ++|||+||
T Consensus 81 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (289)
T 2yxg_A 81 TEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAV 160 (289)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999 99999999
Q ss_pred eccCchh-hH---hhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~l---~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. ++ .+.. +|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 161 K~s~gd~~~~~~~~~~~--~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 237 (289)
T 2yxg_A 161 KEANPNLSQVSELIHDA--KITVLSGNDELTLPI-IALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPL 237 (289)
T ss_dssp EECCSCTHHHHHHHHHT--CSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHhC--CeEEEECcHHHHHHH-HHCCCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 33 3333 899999999988864 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++++++++++|+
T Consensus 238 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 288 (289)
T 2yxg_A 238 MKAMFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKDLGL 288 (289)
T ss_dssp HHHTTSSSTTHHHHHHHHHTTCSCCCCCTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998888888999999999999988999999999999999999999999875
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-68 Score=514.22 Aligned_cols=276 Identities=35% Similarity=0.569 Sum_probs=260.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||+ ||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++|
T Consensus 14 ~~Gv~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~s 92 (306)
T 1o5k_A 14 FRGVGTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNS 92 (306)
T ss_dssp CSEEEEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSC
T ss_pred cCCeeeeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCcc
Confidence 8999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGi 215 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+ ++|||+||
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgi 172 (306)
T 1o5k_A 93 TEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 172 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999 99999999
Q ss_pred eccCchh-h---HhhhhCC---ceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGN---GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~---~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
|++++|. + +.+..++ +|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++
T Consensus 173 Kdssgd~~~~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l 251 (306)
T 1o5k_A 173 XEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYL-LCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKL 251 (306)
T ss_dssp EECCCCHHHHHHHHHHHHHHCTTCEEEESSGGGHHHH-HHHTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHhcCCCCCcEEEEECcHHHHHHH-HHCCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999983 3 3333334 899999999988865 8999999999999999999999986 575 67899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 283 FPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 283 ~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
.++++.++..+++..+|++|+++|++.+.+|+|+.+++++++++++++++++|+
T Consensus 252 ~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 305 (306)
T 1o5k_A 252 RPLMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGL 305 (306)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHTTSSCCCCCTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 999998888888999999999999988999999999999999999999999875
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-68 Score=510.04 Aligned_cols=277 Identities=34% Similarity=0.517 Sum_probs=261.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++||| +||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 2 ~~Gv~~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 80 (292)
T 2vc6_A 2 FEGSITALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNS 80 (292)
T ss_dssp CCEEEEECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSS
T ss_pred CCcEEEeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCcc
Confidence 689999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGi 215 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|++ +|||+|+
T Consensus 81 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgi 160 (292)
T 2vc6_A 81 TAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGV 160 (292)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999998 9999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++
T Consensus 161 K~s~gd~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l 239 (292)
T 2vc6_A 161 XDATGNLLRPSLERMACGEDFNLLTGEDGTALGY-MAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPL 239 (292)
T ss_dssp EECSCCTHHHHHHHHHSCTTSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHcCCCEEEEECchHHHHHH-HHcCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999983 3 3344467899999999988865 8999999999999999999999986 575 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
++.++..+++..+|++|+++|++.+.+|+|+.+++++++++++++++++++.
T Consensus 240 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 291 (292)
T 2vc6_A 240 HRALFLETNPAGAKYALQRLGRMRGDLRLPLVTISPSFQEEIDDAMRHAGIL 291 (292)
T ss_dssp HHHTTSSSTTHHHHHHHHHTTSSCCCCCTTCCCCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCcc
Confidence 9988888889999999999999889999999999999999999999998753
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-68 Score=510.79 Aligned_cols=276 Identities=30% Similarity=0.492 Sum_probs=259.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++| +||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++|
T Consensus 4 ~~Gi~~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~ 82 (292)
T 3daq_A 4 FEGVGVALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTND 82 (292)
T ss_dssp CCEEEEECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSC
T ss_pred CCeEEEeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCccc
Confidence 799999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++++++++.+|+++|||+|||
T Consensus 83 t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 162 (292)
T 3daq_A 83 TEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALK 162 (292)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999996 7999999999999999999999999999999999
Q ss_pred ccCchh-hH---hhhhCC-ceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cC-CcHHHHHHHHHHHH
Q 018253 217 ECVGND-RV---EHYTGN-GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GG-KNPSLNTKLFPLIE 287 (359)
Q Consensus 217 ~ss~d~-~l---~~~~~~-~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag-~a~~l~~~l~~l~~ 287 (359)
++++|. ++ .+..++ +|.+|+|.|+++++. +..|++|+||+++|++|++++++|+ +| |..+..+++.++++
T Consensus 163 ~ssgd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~g~d~~~A~~~l~~l~~ 241 (292)
T 3daq_A 163 DATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEY-YQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTLLS 241 (292)
T ss_dssp ECCCCHHHHHHHHTTSCTTTSEEEESCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HhcCCCEEEeCHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999983 33 333455 899999999998875 8999999999999999999999986 58 75544449999999
Q ss_pred HHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 288 WLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 288 ~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
.++..+++..+|++|+++|+..+.+|+|+.+++++++++|+++++++|+
T Consensus 242 ~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~l 290 (292)
T 3daq_A 242 ALSVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKVLREAYDTFKA 290 (292)
T ss_dssp HHTTSSTTTTHHHHHHHTTSSBSCCCTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9988888888999999999988999999999999999999999999875
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-68 Score=510.58 Aligned_cols=276 Identities=23% Similarity=0.371 Sum_probs=259.3
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|++
T Consensus 11 ~~~Gv~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~ 90 (303)
T 2wkj_A 11 NLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCV 90 (303)
T ss_dssp GGCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred CCCceEEeeEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++|+++++.+|+++|||+|
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvg 170 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGA 170 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999986 79999999999999999999999999999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+. .++|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+
T Consensus 171 iK~s~gd~~~~~~~~~~-~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 248 (303)
T 2wkj_A 171 LXQTSGDLYQMEQIRRE-HPDLVLYNGYDNIFASG-LLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNK 248 (303)
T ss_dssp EEECCCCHHHHHHHHHH-CTTCEEEECCGGGHHHH-HHHTCCEEEETTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHh-CCCeEEEeCcHHHHHHH-HHCCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999983 3 3333 56899999999988764 8999999999999999999999986 575 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g-~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+++.++..+++..+|++|+++|++.+ .+|+|+.+++++++++|+++++++.
T Consensus 249 l~~~~~~~~~~~~~K~al~~~G~~~g~~~R~Pl~~l~~~~~~~l~~~l~~~~ 300 (303)
T 2wkj_A 249 VIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLM 300 (303)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTSCSSCCCCTTSCCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99988777788999999999999888 9999999999999999999998753
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-68 Score=516.39 Aligned_cols=278 Identities=21% Similarity=0.230 Sum_probs=259.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 35 ~~Gv~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~s 114 (332)
T 2r8w_A 35 FKGLSAFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALR 114 (332)
T ss_dssp GCEEEECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSS
T ss_pred cCCeeEEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++|+++++.+|+++|||+|||
T Consensus 115 t~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiK 194 (332)
T 2r8w_A 115 TDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIK 194 (332)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCch----h-hHh---hhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 217 ECVGN----D-RVE---HYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 217 ~ss~d----~-~l~---~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
++++| . ++. +..+++|.||+|.|.++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++
T Consensus 195 dssgd~~~~~~~~~~l~~~~~~~f~v~~G~D~~~l~~-l~~G~~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l 273 (332)
T 2r8w_A 195 MPLPADADYAGELARLRPKLSDDFAIGYSGDWGCTDA-TLAGGDTWYSVVAGLLPVPALQLMRAAQAGNAEEAKRLDATF 273 (332)
T ss_dssp ECCCTTCCHHHHHHHHTTTSCTTCEEEECCHHHHHHH-HHTTCSEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred eCCCCchhHHHHHHHHHHhcCCCEEEEeCchHHHHHH-HHCCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998 4 333 33456899999999988764 8999999999999999999999986 575 67899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 283 FPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 283 ~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
.++++.++..+++..+|++|+++|++.+.+|+|+.+++++++++|++++++++..
T Consensus 274 ~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 328 (332)
T 2r8w_A 274 QPLWALFKEFGSIRVIYAAANILSLTVSEPPRPILPLTSAERQRVEEALEALSAL 328 (332)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTSCCCCCCTTSCCCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcchh
Confidence 9999987555578899999999999888999999999999999999999998754
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-68 Score=517.94 Aligned_cols=278 Identities=24% Similarity=0.397 Sum_probs=261.8
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|+++
T Consensus 32 ~~Gv~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~s 111 (343)
T 2v9d_A 32 FTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTN 111 (343)
T ss_dssp SCEECCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSC
T ss_pred cCCeEEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGi 215 (359)
|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|++||++|+++++.+|+ ++|||+||
T Consensus 112 t~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgi 191 (343)
T 2v9d_A 112 ARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGI 191 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999 99999999
Q ss_pred eccCchh-h---HhhhhC---CceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 216 KECVGND-R---VEHYTG---NGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~---~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
|++++|. + +.+..+ ++|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++
T Consensus 192 Kdssgd~~~~~~l~~~~~~~~~~f~v~~G~D~~~l~~-l~~Ga~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l 270 (343)
T 2v9d_A 192 KDTIDSVAHLRSMIHTVKGAHPHFTVLCGYDDHLFNT-LLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTL 270 (343)
T ss_dssp EECCSCHHHHHHHHHHHHHHCTTCEEEESSGGGHHHH-HHTTCCEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHhcCCCCCCEEEEECcHHHHHHH-HHCCCCEEEeCHHHhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999983 3 333334 7899999999988865 8999999999999999999999986 575 67899999
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHcCCCC-CCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 283 FPLIEWLFQEPN-PIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 283 ~~l~~~l~~~~~-~~~~K~al~~~G~~~-g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
.++++.++..++ +..+|++|+++|++. +.+|+|+.+++++++++|+++++++++.
T Consensus 271 ~~l~~~~~~~~~~~~~iK~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 327 (343)
T 2v9d_A 271 LQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLKLC 327 (343)
T ss_dssp HHGGGGGGGSSSCHHHHHHHHHHTTCCCCCCCCTTSCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCChHHHHHHHHHHCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 999998887777 899999999999987 8999999999999999999999998864
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-66 Score=495.50 Aligned_cols=271 Identities=22% Similarity=0.349 Sum_probs=255.7
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|+++|
T Consensus 5 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t 84 (294)
T 3b4u_A 5 FGLSAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSI 84 (294)
T ss_dssp CEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSH
T ss_pred CcEEEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHHHHHh-cCCC-
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVIHTMA-QSPN- 211 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~l~~La-~~pn- 211 (359)
+++++++++|+++|||++|++||||++ ++++++++||++|+++ +||++||+|++||++++++++.+|+ ++||
T Consensus 85 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ 164 (294)
T 3b4u_A 85 EDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGI 164 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCc
Confidence 999999999999999999999999999 9999999999999974 6999999999999999999999999 9999
Q ss_pred eEEEeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHH
Q 018253 212 LAGVKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIE 287 (359)
Q Consensus 212 ivGiK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~ 287 (359)
|+|||++++|. + +.+..+ +|.||+|.|+++++. +..|++|+||+++|++|+.++++|+ + +++|+++.++++
T Consensus 165 ivgiKds~gd~~~~~~~~~~~~-~f~v~~G~d~~~l~~-l~~G~~G~is~~~n~~P~~~~~l~~--~-~~l~~~l~~l~~ 239 (294)
T 3b4u_A 165 VTGVKDSSGNWSHTERLLKEHG-DLAILIGDERDLARG-VRLGGQGAISGVANFLTQEVRAMAV--D-GKDDPRIVDLVV 239 (294)
T ss_dssp EEEEEECCCCHHHHHHHHHHHT-TSEEEECCHHHHHHH-HHTTCCEEEESGGGTCHHHHHHHHT--T-CCCCHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHhCC-CeEEEEccHHHHHHH-HHCCCCEEEeCHHHhCHHHHHHHHH--H-HHHHHHHHHHHH
Confidence 99999999983 3 333345 899999999988864 8999999999999999999999998 3 889999999999
Q ss_pred HHhcCCChHHHHHHHHH-cC-CCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 288 WLFQEPNPIPLNTALAQ-LG-VVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 288 ~l~~~~~~~~~K~al~~-~G-~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
.++..+++..+|++|++ +| +..+.+|+|+.+++++++++|+++++++.
T Consensus 240 ~~~~~~~~~~~K~al~~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 289 (294)
T 3b4u_A 240 ELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQIEGAFDALF 289 (294)
T ss_dssp HHTTSCHHHHHHHHHHHHHCCGGGGCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 88888888999999999 99 67789999999999999999999998853
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-65 Score=495.76 Aligned_cols=276 Identities=20% Similarity=0.287 Sum_probs=255.7
Q ss_pred ccCCceEEeeecCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 57 IKALRLITAIKTPY-LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 57 ~~~~Gi~~al~TPF-~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
|+++|++++++||| ++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|
T Consensus 10 ~~~~Gv~~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg 89 (314)
T 3d0c_A 10 KRFSTISGINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG 89 (314)
T ss_dssp GGGSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred ccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC
Confidence 45899999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeE
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLA 213 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pniv 213 (359)
+ ||+++++++++|+++|||++|++||||++++++++++||++|+++ +||++|| +||+ |+++++.+|+++|||+
T Consensus 90 ~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn---~tg~-l~~~~~~~La~~pnIv 164 (314)
T 3d0c_A 90 Y-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF---KDAH-LSDDVIKELAPLDKLV 164 (314)
T ss_dssp S-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE---CCTT-SCTHHHHHHTTCTTEE
T ss_pred c-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe---CCCC-cCHHHHHHHHcCCCEE
Confidence 9 999999999999999999999999999999999999999999997 7999999 8999 9999999999999999
Q ss_pred EEeccCchh-h---HhhhhCC--ceEEEecCCc-hhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHH
Q 018253 214 GVKECVGND-R---VEHYTGN--GIVVWSGNDD-QCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT 280 (359)
Q Consensus 214 GiK~ss~d~-~---l~~~~~~--~~~v~~G~d~-~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~ 280 (359)
|||++++|. + +.+..++ +|.||+|.|+ ++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+
T Consensus 165 giKdssgd~~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~ 243 (314)
T 3d0c_A 165 GIKYAINDIQRVTQVMRAVPKSSNVAFICGTAEKWAPFF-YHAGAVGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWE 243 (314)
T ss_dssp EEEECCCCHHHHHHHHHHSCGGGCCEEEETTHHHHHHHH-HHHTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCCCCCEEEEEeCcHHHHHHH-HHcCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999984 3 3333455 8999999998 77764 8999999999999999999999986 575 678999
Q ss_pred HHHHHHHHHhcC-CC--hHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCccc
Q 018253 281 KLFPLIEWLFQE-PN--PIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGREN 338 (359)
Q Consensus 281 ~l~~l~~~l~~~-~~--~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~~ 338 (359)
++.++++.++.. .+ +..+|++|+++|++.+.+|+|+.+++++++++++++++++++..
T Consensus 244 ~l~~l~~~~~~~~~~~~~~~iK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 304 (314)
T 3d0c_A 244 DVVPFEDLRAKHNNGNNVVIIKEAMEQLGLRAGVTREPVNPLSPNDRLELEELLKSWNTQE 304 (314)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCCCCCCTTCCSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHhchhh
Confidence 999999977663 33 56789999999998899999999999999999999999987654
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-65 Score=491.84 Aligned_cols=276 Identities=19% Similarity=0.302 Sum_probs=254.1
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.++||+|||+|+|++
T Consensus 8 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 87 (309)
T 3fkr_A 8 RHRGIFPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHY 87 (309)
T ss_dssp SCCEECCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCCceEEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCC
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPN 211 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pn 211 (359)
+|+++++++++|+++|||++|++|||| ++++++++++||++|+++ +||++||+|. ||++++++++.+|+ ++||
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~~~~La~~~pn 166 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPFLARMAREIEQ 166 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHHhhCCC
Confidence 999999999999999999999999999 689999999999999997 7999999997 99999999999999 5999
Q ss_pred eEEEe-ccCchh-hH---hhhhCCce-EEEecCCchh-hhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHH
Q 018253 212 LAGVK-ECVGND-RV---EHYTGNGI-VVWSGNDDQC-HDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL 278 (359)
Q Consensus 212 ivGiK-~ss~d~-~l---~~~~~~~~-~v~~G~d~~~-~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l 278 (359)
|+||| ++++|. ++ .+..+++| .+|+|.|.+. ++ .+..|++|+|+ +|++|+.++++|+ +|| |+++
T Consensus 167 IvgiK~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~~~l~~-~l~~G~~G~i~--~n~~P~~~~~l~~a~~~Gd~~~A~~l 243 (309)
T 3fkr_A 167 VAYFXIETPGAANKLRELIRLGGDAIEGPWDGEEAITLLA-DLHAGATGAMT--GGGFPDGIRPILEAWREGRHDDAYAR 243 (309)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHGGGCCEEEECGGGTTHHH-HHHTTCCEECC--CSSCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHhcCCceeeecCCchHHHHHH-HHHCCCcEEEE--hhhhHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999 677773 33 33345567 6899998864 45 58999999995 5999999999996 575 6789
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 279 NTKLFPLIEWLFQEPNPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 279 ~~~l~~l~~~l~~~~~~~~~K~al~~~G~-~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
|+++.+++++++..+++..+|++|+++|+ ..+.+|+|+.+++++++++|++++++++..
T Consensus 244 ~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 303 (309)
T 3fkr_A 244 YQAWLPLINHENRQSGILTAKALMREGGVIASERPRHPMPELHPDTRAELLAIARRLDPL 303 (309)
T ss_dssp HHHHHHHHHHHHHTTGGGHHHHHHHHTTSSSCCCCCTTSCCCCHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 99999999999888899999999999998 468899999999999999999999999843
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-65 Score=495.50 Aligned_cols=277 Identities=22% Similarity=0.319 Sum_probs=248.8
Q ss_pred cCCceEEeeecCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYL-PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~-~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
.++|++++++|||+ +||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++.+++|+|||+|+|+
T Consensus 10 ~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 89 (318)
T 3qfe_A 10 PQPGIWCPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGA 89 (318)
T ss_dssp CCSEEEEECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCC
T ss_pred CCCCeEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 58999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCC-C-CCHHHHHHHHHHHHhc--CCeEEEeCCCCC-CCCCCHHHHHHHhc-CC
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYG-K-TSLEGLISHFDSVLSM--GPTIIYNVPSRT-GQDIPPRVIHTMAQ-SP 210 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~-~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t-g~~ls~e~l~~La~-~p 210 (359)
++|+++++++++|+++|||++|++||||+ + ++++++++||++|+++ +||++||+|++| |++++++++.+|++ +|
T Consensus 90 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~p 169 (318)
T 3qfe_A 90 HSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNP 169 (318)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCC
Confidence 99999999999999999999999999877 4 5899999999999997 799999999997 99999999999996 99
Q ss_pred CeEEEeccCchh-hH---hhhh-CCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHH
Q 018253 211 NLAGVKECVGND-RV---EHYT-GNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLN 279 (359)
Q Consensus 211 nivGiK~ss~d~-~l---~~~~-~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~ 279 (359)
||+|||++++|. ++ .+.. +++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| |+++|
T Consensus 170 nIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~ 248 (318)
T 3qfe_A 170 NVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIGG-LSVGSAGCIAAFANVFPKTVSKIYELYKAGKVDQAMELH 248 (318)
T ss_dssp TEEEEEESSCCHHHHHHHHHHSCGGGCEEEESCGGGHHHH-HHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCEEEEEecHHHHHHH-HHCCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999983 33 3323 36899999999988865 8999999999999999999999996 475 67899
Q ss_pred HHHHHHHHHHhcCCChHHHHHHH-----HHcCCCC----CCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 280 TKLFPLIEWLFQEPNPIPLNTAL-----AQLGVVR----PVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 280 ~~l~~l~~~l~~~~~~~~~K~al-----~~~G~~~----g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+++.+++.. ...++..+|++| +++|+.. +.+|+|+.+++++++++|+++|++++..
T Consensus 249 ~~l~~~~~~--~~~~~~~~K~al~~~~~~~~G~~~~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 313 (318)
T 3qfe_A 249 RKAALAESP--CKSGIATTKYAAAIFSAKAAGIEDAEEKLRPRKPYDPPSEAAKQEVRKVMAEVAAI 313 (318)
T ss_dssp HHHHHHTCC--C--CHHHHHHHHHHTHHHHTTCTTHHHHTSCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCHHHHHHHHhhHHHhCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999988765 356888999975 6799954 6899999999999999999999998753
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-65 Score=489.15 Aligned_cols=268 Identities=24% Similarity=0.286 Sum_probs=252.4
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+|++++++|||++||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.+++ ||+|+|+++|
T Consensus 1 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t 77 (293)
T 1w3i_A 1 PEIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK---IIFQVGGLNL 77 (293)
T ss_dssp CEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC---EEEECCCSCH
T ss_pred CCeEEEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC---EEEecCCCCH
Confidence 5899999999999999999999999999999999999999999999999999999999999999887 9999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
+++++++++|+++|||++|++||||++ ++++++++||++|+++ +||++||+|++||++++++++.+ +|||+|||
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnIvgiK 154 (293)
T 1w3i_A 78 DDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE---IGCFTGVK 154 (293)
T ss_dssp HHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH---HCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh---cCCEEEEE
Confidence 999999999999999999999999999 9999999999999997 79999999999999999999999 89999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+ .+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 155 ds~gd~~~~~~~~~-~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 232 (293)
T 1w3i_A 155 DTIENIIHTLDYKR-LNPNMLVYSGSDMLIATV-ASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVI 232 (293)
T ss_dssp ECCSCHHHHHHHHH-HCTTSEEEECCSTTHHHH-HHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHh-cCCCEEEEEccHHHHHHH-HHcCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 444 577899999999988864 8999999999999999999999986 575 678999999999
Q ss_pred HHHhcCCC-hHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 287 EWLFQEPN-PIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 287 ~~l~~~~~-~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+.++..++ +..+|++|+++|++.+.+|+|+.++++++++++++++++++
T Consensus 233 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 282 (293)
T 1w3i_A 233 EASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIR 282 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 98887766 88999999999998889999999999999999999999875
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-66 Score=491.87 Aligned_cols=268 Identities=26% Similarity=0.367 Sum_probs=252.3
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
++++++|||++||+||+++++++++|++++ ++||+++|||||+++||.+||+++++.+++ |+|||+|+|++||++
T Consensus 2 v~~a~vTPf~~dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~----rvpviaGvg~~~t~~ 76 (283)
T 2pcq_A 2 ILPPIPTPFDREGRLDEEAFRELAQALEPL-VDGLLVYGSNGEGVHLTPEERARGLRALRP----RKPFLVGLMEETLPQ 76 (283)
T ss_dssp EECEECCCBCTTCCBCHHHHHHHHHHHGGG-SSCCEETCTTTTGGGSCHHHHHHHHHTCCC----SSCCEEEECCSSHHH
T ss_pred eeeeEeCCCCCCCCcCHHHHHHHHHHHHhh-CCEEEECCcCcCchhcCHHHHHHHHHHHHh----CCcEEEeCCCCCHHH
Confidence 789999999999999999999999999999 999999999999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCC-CHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCc
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKT-SLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVG 220 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~-s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~ 220 (359)
+++++++|+++|||++|++||||+++ +++++++||++|++.+||++||+|++||++++++++.+|+++|||+|+|++++
T Consensus 77 ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdssg 156 (283)
T 2pcq_A 77 AEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAEKMPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSG 156 (283)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHHHSCEEEEECHHHHCCCCCHHHHHHHTTSTTEEEEEECSC
T ss_pred HHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHhcCCCEEEEEECCC
Confidence 99999999999999999999999999 99999999999999789999999999999999999999999999999999999
Q ss_pred hh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHHHh
Q 018253 221 ND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEWLF 290 (359)
Q Consensus 221 d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~l~ 290 (359)
|. + +.+ .+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.++++.++
T Consensus 157 d~~~~~~~~~-~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~ 234 (283)
T 2pcq_A 157 DLSRIAFYQA-RLQEFRVYTGHAPTFLGA-LALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQELQKKLFPLGDLLA 234 (283)
T ss_dssp CHHHHHHHHH-HCSSCEEEECCGGGHHHH-HHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHh-cCCCEEEEECcHHHHHHH-HHcCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 83 3 444 567899999999988874 8999999999999999999999986 575 6789999999999877
Q ss_pred cCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHH--HHHHHHHHHcCcc
Q 018253 291 QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKR--AEFVNLVNQIGRE 337 (359)
Q Consensus 291 ~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~--~~i~~~l~~lgl~ 337 (359)
..+++ .+|++|+++|++.+.+|+|+.+++++++ ++++++++++|+.
T Consensus 235 ~~~~~-~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~~~l~~~l~~~~~~ 282 (283)
T 2pcq_A 235 KGGVP-LLKQALRHLGLPAGYPRPPYPAESPLWERFLPVLEGLKEEGWV 282 (283)
T ss_dssp HHHHH-HHHHHHHHTTCCCCCCCTTSCSSCTTHHHHHHHHHHHHHTTCC
T ss_pred cCCcH-HHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhcCcc
Confidence 76778 9999999999988899999999999999 9999999998753
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-65 Score=486.33 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=250.2
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+|++++++|||+ ||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.++| ||+|+|++||
T Consensus 1 ~Gv~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t 76 (286)
T 2r91_A 1 MEIVAPVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNA 76 (286)
T ss_dssp CEEEEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSH
T ss_pred CCeEEeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCH
Confidence 589999999999 999999999999999999999999999999999999999999999999999887 9999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
+++++++++|+++|||++|++||||++ ++++++++||++|+++ +||++||+|++||++++++++.+ +|||+|||
T Consensus 77 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnivgiK 153 (286)
T 2r91_A 77 DEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE---LGCIRGVK 153 (286)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH---HSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh---cCCEEEEE
Confidence 999999999999999999999999999 9999999999999997 79999999999999999999999 89999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+ .+++|.+|+|.|+++++. +..|++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 154 ds~gd~~~~~~~~~-~~~~f~v~~G~d~~~~~~-l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 231 (286)
T 2r91_A 154 DTNESLAHTLAYKR-YLPQARVYNGSDSLVFAS-FAVRLDGVVASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEIV 231 (286)
T ss_dssp ECCSCHHHHHHHHH-HCTTSEEEECCGGGHHHH-HHTTCSEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHh-cCCCEEEEEccHHHHHHH-HHcCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 444 577899999999988864 8999999999999999999999986 575 678999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 287 EWLFQEPNP-IPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 287 ~~l~~~~~~-~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
+.++..+++ ..+|++|+++|++.+.+|+|+.+++++++++|+++++++
T Consensus 232 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 280 (286)
T 2r91_A 232 ESARHIGYAAAVYELVEIFQGYEAGEPRGPVYPLDPEEKAWLRAAVAKA 280 (286)
T ss_dssp HHHHHHCHHHHHHHHHHHHHCSCCCBCCTTSCCCCHHHHHHHHHHTHHH
T ss_pred HHHhccCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 988777678 899999999999888999999999999999999999876
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=490.15 Aligned_cols=276 Identities=22% Similarity=0.268 Sum_probs=253.4
Q ss_pred cCCceEEeeecCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLP-DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~-dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++|++++++|||++ ||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.++||+|||+|+|+
T Consensus 11 ~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~ 90 (316)
T 3e96_A 11 ALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY 90 (316)
T ss_dssp HTSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred cCCceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc
Confidence 489999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++++|+++|||++|+++|||++++++++++||++|+++ +||++||+ |.+++++++.+|+++|||+|
T Consensus 91 -~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~----g~~l~~~~~~~La~~pnIvg 165 (316)
T 3e96_A 91 -ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK----DPEISDRVLVDLAPLQNLVG 165 (316)
T ss_dssp -SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC----CTTSCTHHHHHHTTCTTEEE
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC----CCCCCHHHHHHHHcCCCEEE
Confidence 999999999999999999999999999999999999999999997 79999996 78999999999999999999
Q ss_pred EeccCchh-hHh---hhhCC-ceE-EEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 215 VKECVGND-RVE---HYTGN-GIV-VWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 215 iK~ss~d~-~l~---~~~~~-~~~-v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
||++++|. ++. +..++ +|. +|+|.|+.++...+..|++|+||+++|++|+.++++|+ +|| ++++|+++
T Consensus 166 iKdssgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l 245 (316)
T 3e96_A 166 VKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWEDI 245 (316)
T ss_dssp EEECCCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999984 333 33344 798 99999887665557899999999999999999999996 575 67899999
Q ss_pred HHHHHHHh---cCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCccc
Q 018253 283 FPLIEWLF---QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGREN 338 (359)
Q Consensus 283 ~~l~~~l~---~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~~ 338 (359)
.++.+... ..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++|+..
T Consensus 246 ~~l~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~l~~ 304 (316)
T 3e96_A 246 VPFEDLRGKYNQGNNVVVIKEAMEMLRQNAGVTRAPVNELSNEDKQLVTELLSSWKLLQ 304 (316)
T ss_dssp HHHHHHHTTTTTTTTTHHHHHHHHHTTCCCBBCCTTCCCCCHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHhccCccHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCC
Confidence 99876542 356889999999999998899999999999999999999999999764
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=489.21 Aligned_cols=276 Identities=19% Similarity=0.250 Sum_probs=250.7
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++|+|++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.+ ||+|||+|+|++
T Consensus 8 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~ 86 (313)
T 3dz1_A 8 EAAGTFAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAP 86 (313)
T ss_dssp TCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCS
T ss_pred CCCeEEEEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNL 212 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a----~PiiiYn~P~~tg~~ls~e~l~~La-~~pni 212 (359)
+|+++++++++|+++|||++|++|||| +++++++++||++|+++ +||++||+|++||++|+++++.+|+ ++|||
T Consensus 87 ~t~~ai~la~~A~~~Gadavlv~~P~~-~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnI 165 (313)
T 3dz1_A 87 GFAAMRRLARLSMDAGAAGVMIAPPPS-LRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASC 165 (313)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCTT-CCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC-CCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCE
Confidence 999999999999999999999999985 58999999999999985 6999999999999999999999999 59999
Q ss_pred EEEec-cCchh-h---HhhhhC----CceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHH
Q 018253 213 AGVKE-CVGND-R---VEHYTG----NGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPS 277 (359)
Q Consensus 213 vGiK~-ss~d~-~---l~~~~~----~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~ 277 (359)
+|||+ +++|. + +.+..+ ++|.||+|.|+++++..+..|++|+|++ |++|++++++|+ +|| |++
T Consensus 166 vgiKd~~~~~~~~~~~~~~~~~~~~~~~f~v~~G~d~~~l~~~l~~G~~G~i~~--~~~P~~~~~l~~a~~~Gd~~~A~~ 243 (313)
T 3dz1_A 166 VMLKHEDWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMERGADGAMTG--YCFPDMLVDVVKLSKAGQRDLAHN 243 (313)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHTSSCCCEEEECGGGTTHHHHHHHTCCEEEEC--CSCHHHHHHHHHHHHTTCHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHhcCccCCCCeEEEeCCcHHHHHHHHHCCCcEEEeC--cccHHHHHHHHHHHHCCCHHHHHH
Confidence 99998 46663 3 333333 7899999999887764489999999975 789999999996 475 678
Q ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 278 LNTKLFPLIEWLFQEP-NPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 278 l~~~l~~l~~~l~~~~-~~~~~K~al~~~G~-~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+|+++.++++.++..+ ++..+|++|+++|+ ..+.+|+|+.+++++++++|+++|+++++.
T Consensus 244 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 305 (313)
T 3dz1_A 244 LFDAHLPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLARV 305 (313)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999877654 68899999999998 478999999999999999999999999865
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-65 Score=495.87 Aligned_cols=270 Identities=21% Similarity=0.268 Sum_probs=251.1
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++. .+++|+|||+|+|+++
T Consensus 27 ~~Gv~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~---~~~grvpViaGvg~~s 103 (344)
T 2hmc_A 27 FSGVIPALMTPCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER---LVKAGIPVIVGTGAVN 103 (344)
T ss_dssp TSEEEEBCCCCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH---HHHTTCCEEEECCCSS
T ss_pred cCceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH---HhCCCCcEEEecCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHh-c--CCeEEEeCCCCCCCCCCHHHHHHH-hcCCCeE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLS-M--GPTIIYNVPSRTGQDIPPRVIHTM-AQSPNLA 213 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~-a--~PiiiYn~P~~tg~~ls~e~l~~L-a~~pniv 213 (359)
|+++++++++|+++|||++|++||||++ ++++++++||++|++ + +||++||+| +||++|+++++.+| +++|||+
T Consensus 104 t~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P-~tg~~l~~e~~~~L~a~~pnIv 182 (344)
T 2hmc_A 104 TASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP-YYGFATRADLFFALRAEHKNLV 182 (344)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG-GGTBCCCHHHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC-ccCCCcCHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999 999999999999999 6 799999999 99999999999999 8999999
Q ss_pred EEeccCc--hh-hHhh---hhCCceEEEecCCchhhhhhh-hcCCceeecccccccHHHHHHHHHc------CC--cHHH
Q 018253 214 GVKECVG--ND-RVEH---YTGNGIVVWSGNDDQCHDARW-NHGATGVISVTSNLVPGMMRELMFG------GK--NPSL 278 (359)
Q Consensus 214 GiK~ss~--d~-~l~~---~~~~~~~v~~G~d~~~~~~~l-~~Ga~G~is~~an~~P~l~~~l~~a------g~--a~~l 278 (359)
|||++++ |. ++.+ ..+++|.||+|.|+++++. + ..|++|+||+++|++|+.++++|++ || ++++
T Consensus 183 GiKdssgp~d~~~~~~~~~~~~~~f~v~~G~D~~~l~~-l~~~Ga~G~is~~anv~P~~~~~l~~a~~~~~~Gd~~A~~l 261 (344)
T 2hmc_A 183 GFKEFGGPADMRYAAENITSRDDEVTLMIGVDTAVVHG-FVNCGATGAITGIGNVLPKEVIHLCKLSQAAAKGDADARAR 261 (344)
T ss_dssp EEEECSCHHHHHHHHHHTSCSSSSCEEEECSGGGHHHH-HHHSCCCEEEESGGGTSHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHHcCCCEEEEECcHHHHHHH-HHHcCCCEEEeCHHHhhHHHHHHHHHhHHHHhcCcHHHHHH
Confidence 9999999 83 4433 3457899999999998865 8 8999999999999999999998865 55 4578
Q ss_pred HHHHH----HHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCC---CCCCHHHHHHHHHHHHHcC
Q 018253 279 NTKLF----PLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPY---VPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 279 ~~~l~----~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl---~~l~~e~~~~i~~~l~~lg 335 (359)
|+++. +++++++..+++..+|++|+++|+ +.+|+|+ .+++++++++|++++++++
T Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~~K~al~~~G~--g~~R~Pl~~~~~l~~~~~~~l~~~l~~~~ 323 (344)
T 2hmc_A 262 ALELEQALAVLSSFDEGPDLVLYFKYMMVLKGD--KEYTLHFNETDALTDSQRGYVEAQFKLFN 323 (344)
T ss_dssp HHHHHHHTHHHHHGGGSTTHHHHHHHHHHHTTC--GGGSCCSSTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHhcCCcHHHHHHHHHHCCC--CCCCCCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999 999887777778899999999999 8899999 9999999999999998865
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-64 Score=482.47 Aligned_cols=266 Identities=20% Similarity=0.294 Sum_probs=250.5
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||+++++.+++.++| ||+|+|++||
T Consensus 1 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t 77 (288)
T 2nuw_A 1 MEIISPIITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK---LIFQVGSLNL 77 (288)
T ss_dssp CEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC---EEEECCCSCH
T ss_pred CCeEEeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCH
Confidence 5999999999999999999999999999999999999999999999999999999999999998887 9999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
+++++++++|+++|||++|++||||++ ++++++++||++|+++ +||++||+|++||++++++++.+| ||+|||
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L----nIvgiK 153 (288)
T 2nuw_A 78 NDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL----PVKGIK 153 (288)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT----TEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc----EEEEEE
Confidence 999999999999999999999999999 9999999999999997 799999999999999999999999 999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+ .+++|.+|+|.|+++++. +.. ++|+||+++|++|+.++++|+ +|| ++++|+++.+++
T Consensus 154 dssgd~~~~~~~~~-~~~~f~v~~G~d~~~~~~-l~~-~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 230 (288)
T 2nuw_A 154 DTNQDLAHSLEYKL-NLPGVKVYNGSNTLIYYS-LLS-LDGVVASFTNFIPEVIVKQRDLIKQGKLDDALRLQELINRLA 230 (288)
T ss_dssp ECCSCHHHHHHHHH-HSTTCEEEECCGGGHHHH-HTT-SSEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHh-cCCCeEEEECcHHHHHHH-HHH-hCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 444 578899999999998875 778 999999999999999999986 575 678999999999
Q ss_pred HHHhcCCC-hHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 287 EWLFQEPN-PIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 287 ~~l~~~~~-~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+.++..++ +..+|++|+++|++.+.+|+|+.++++++++++++++++++
T Consensus 231 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 280 (288)
T 2nuw_A 231 DILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLK 280 (288)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 98888777 88999999999998889999999999999999999999875
|
| >4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00098 Score=63.16 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=153.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCC--------CHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSN--------STREAI 143 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~--------st~~ai 143 (359)
..||+++.-+.=++|-+.|..--=..-|.--+.-|.+..-++|++....+++. .-.|.+|+|.. +.++.+
T Consensus 57 aaiDWdaTLafR~~Lws~GLGVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~pg~~ia~G~GTDqL~~~~~~~l~~V~ 136 (396)
T 4dnh_A 57 PAIDWERTLAFRHRLWDLGLGVAESMDTAQRGMGLGWPEARELIRRSLAEARGRPDALIACGAGTDHLAPGPDVSIDDIL 136 (396)
T ss_dssp CCBCHHHHHHHHHHHHHTTCEEEETCGGGTBTTTBCHHHHHHHHHHHHHHHHTSSSCCEEEEECCTTSCCCTTCCHHHHH
T ss_pred ccCChHHHHHHHHHHHHccccHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhcCCCCeeeeccCcCCCCCCCCCCHHHHH
Confidence 57999999999999999997555556788889999999999999998776532 24577787732 444443
Q ss_pred ----HHHHHHHhCCCCEEEEcCCCC--CCCCHHHHHHHHHHHHhc--CCeEEEeC-----CCCCCCC----CC--HHHHH
Q 018253 144 ----HATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSVLSM--GPTIIYNV-----PSRTGQD----IP--PRVIH 204 (359)
Q Consensus 144 ----~la~~a~~~Gadav~v~pP~y--~~~s~~~l~~yf~~Ia~a--~PiiiYn~-----P~~tg~~----ls--~e~l~ 204 (359)
|+....++.|+..|+...-.. ..-++++..+-|..|.+. .|||++=. |...|+. +. .+++.
T Consensus 137 ~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l 216 (396)
T 4dnh_A 137 AAYESQIEAIEAEGGRIILMASRALAAAAKGPEDYIRVYDRVLSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCL 216 (396)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCHHHHHHCCSHHHHHHHHHHHHHHCSSCEEEEEECTTTCGGGTTTTSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEehhHHHHHHhCCHHHHHHHHHHHHHhcCCCEEEEecccccChhhccccCCCCHHHHHHHHH
Confidence 566777889998766543332 235788888999998875 69998743 6666663 22 35666
Q ss_pred HHh-cC-CCeEEEeccCchh----hHhhhhCCceEEEecCCchhhhhhhhcC-----CceeecccccccHHHHHHHH--H
Q 018253 205 TMA-QS-PNLAGVKECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHG-----ATGVISVTSNLVPGMMRELM--F 271 (359)
Q Consensus 205 ~La-~~-pnivGiK~ss~d~----~l~~~~~~~~~v~~G~d~~~~~~~l~~G-----a~G~is~~an~~P~l~~~l~--~ 271 (359)
.|. ++ ..|-|||.|--|. .+++...+++++|+|+|- -++. |..| .+...+...-+.|.....+- +
T Consensus 217 ~lI~~~~~kVDGIKiSLLDa~~Ei~lRrrLP~gVrmYTGDDF-nYpE-LI~GD~~g~ShALLGIFdaIaPaAs~Al~aLd 294 (396)
T 4dnh_A 217 DVLEAHAAKVDGIKISLLSKEKEIVMRRQLPKGVRMYTGDDF-NYAE-LIAGDEEGHSDALLGIFDAIAPVASAALEALG 294 (396)
T ss_dssp HHHHHTGGGEEEEEEESCCHHHHHHHHTSCCTTCEEEECCTT-THHH-HHHCCSSCCCEEEESHHHHTHHHHHHHHHHHH
T ss_pred HHHHhChhhcCceEEeeeccHhHHHHHHhCCCcceeecCCCC-CcHH-HhcCCCCCccHHHHhhhhhccHHHHHHHHHHh
Confidence 665 56 5799999998883 355666789999999864 4455 6666 34444555556677666654 5
Q ss_pred cCCcH---HHHHHHHHHHHHHhcCC
Q 018253 272 GGKNP---SLNTKLFPLIEWLFQEP 293 (359)
Q Consensus 272 ag~a~---~l~~~l~~l~~~l~~~~ 293 (359)
+|+.. ++.+--.||-+.+|..|
T Consensus 295 ~Gd~~~f~~iL~PTvpLsRhiF~aP 319 (396)
T 4dnh_A 295 SGRNGEFFELLEPTVPLSRHIFKAP 319 (396)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHTCSS
T ss_pred CCCHHHHHHHhcCcchhhhhhhcCC
Confidence 78754 44455567777788765
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=68.50 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=108.4
Q ss_pred eEEeeecCCCC---CCCC-CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLP---DGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~---dg~I-D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
....+.++++. .+.+ +.+.+.++++.+.+.|++++++.. .+++.+.+...+++|+++++.+.
T Consensus 24 ~~~~~~~~id~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~ 89 (273)
T 2qjg_A 24 SEKTVIVPMDHGVSNGPIKGLIDIRKTVNDVAEGGANAVLLHK--------------GIVRHGHRGYGKDVGLIIHLSGG 89 (273)
T ss_dssp TCCEEEEECCHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEECH--------------HHHHSCCCSSSCCCEEEEECEEC
T ss_pred CCCEEEEEcccccccCCCcchhhHHHHHHHHHhcCCCEEEeCH--------------HHHHHHHHhhcCCCCEEEEEcCC
Confidence 34555666654 3333 556667899999999999998632 12332223345689999988654
Q ss_pred C-------HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCC----CCHH
Q 018253 138 S-------TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQD----IPPR 201 (359)
Q Consensus 138 s-------t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~----ls~e 201 (359)
+ ++...+.++.|.+.|||.+.+. .++...+.+++++..+++.+. .|+++...+ .|.. ++++
T Consensus 90 ~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~-l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~--~G~~l~~~~~~~ 166 (273)
T 2qjg_A 90 TAISPNPLKKVIVTTVEEAIRMGADAVSIH-VNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYP--RGKHIQNERDPE 166 (273)
T ss_dssp CTTSSSTTCCEECSCHHHHHHTTCSEEEEE-EEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEE--CSTTCSCTTCHH
T ss_pred CcCCCCcccchHHHHHHHHHHcCCCEEEEE-EecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCC--CCcccCCCCCHh
Confidence 4 1223677888899999999432 123345677777777777653 698887644 2443 5666
Q ss_pred HHHHH---h-c-CCCeEEEeccCch-hhH---hhhhCCceEEEecCCchh-------hhhhhhcCCceeecccc
Q 018253 202 VIHTM---A-Q-SPNLAGVKECVGN-DRV---EHYTGNGIVVWSGNDDQC-------HDARWNHGATGVISVTS 259 (359)
Q Consensus 202 ~l~~L---a-~-~pnivGiK~ss~d-~~l---~~~~~~~~~v~~G~d~~~-------~~~~l~~Ga~G~is~~a 259 (359)
.+.++ + + -..++++..+ .+ ..+ .+..+-.+....|-...- +...+..|++|+..+.+
T Consensus 167 ~~~~~a~~a~~~Gad~i~~~~~-~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~ 239 (273)
T 2qjg_A 167 LVAHAARLGAELGADIVKTSYT-GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRN 239 (273)
T ss_dssp HHHHHHHHHHHTTCSEEEECCC-SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHH
T ss_pred HHHHHHHHHHHcCCCEEEECCC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHH
Confidence 65544 3 2 2567777653 33 223 323333455555654211 33345789999987643
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.013 Score=55.55 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc--------CcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCCC---CHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG--------EGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGSN---STREAIH 144 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG--------E~~~LT~~Er~~li~~~v~~~~-grvpViagvg~~---st~~ai~ 144 (359)
+.+...+.+..+++.|+.|+-+=+.++ .-...+.+|..+-++.+++... ...-|++=+-+. ..+++|+
T Consensus 96 ~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~ 175 (298)
T 3eoo_A 96 GAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIE 175 (298)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHH
Confidence 677888899999999999999877664 3346788999999988888754 345556545432 5788999
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC-CCCCCCHHHHHHH
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR-TGQDIPPRVIHTM 206 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~-tg~~ls~e~l~~L 206 (359)
+++.+.++|||.+++-.+ .+.+++.++-+++. .|+++ |.-.. ..-.++.+.+.+|
T Consensus 176 Ra~ay~~AGAD~if~~~~----~~~ee~~~~~~~~~--~Pl~~-n~~~~g~tp~~~~~eL~~l 231 (298)
T 3eoo_A 176 RAIAYVEAGADMIFPEAM----KTLDDYRRFKEAVK--VPILA-NLTEFGSTPLFTLDELKGA 231 (298)
T ss_dssp HHHHHHHTTCSEEEECCC----CSHHHHHHHHHHHC--SCBEE-ECCTTSSSCCCCHHHHHHT
T ss_pred HHHhhHhcCCCEEEeCCC----CCHHHHHHHHHHcC--CCeEE-EeccCCCCCCCCHHHHHHc
Confidence 999999999999998654 47888877777663 78755 42111 0113565555555
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.014 Score=55.40 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC--------cCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC---CCHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE--------GQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS---NSTREA 142 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE--------~~~LT~~Er~~li~~~v~~~---~grvpViagvg~---~st~~a 142 (359)
+.+...+.++.+++.|+.|+-+=+.++. -...+.+|..+-++.+++.. +...-|++=+-+ ...+++
T Consensus 93 ~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeA 172 (302)
T 3fa4_A 93 GPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEES 172 (302)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHH
Confidence 4667889999999999999999887753 35678899888888887764 445556665543 357999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeC-CCCCCCCCCHHHHHHH
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNV-PSRTGQDIPPRVIHTM 206 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~-P~~tg~~ls~e~l~~L 206 (359)
|++++.+.++|||++++..+ .+.+++.++.+.+. ..|+++ |. +.-..-.++.+.+++|
T Consensus 173 i~Ra~ay~eAGAD~ifi~g~----~~~~ei~~~~~~~~-~~Pl~~-n~~~~g~~p~~~~~eL~~l 231 (302)
T 3fa4_A 173 VARLRAARDAGADVGFLEGI----TSREMARQVIQDLA-GWPLLL-NMVEHGATPSISAAEAKEM 231 (302)
T ss_dssp HHHHHHHHTTTCSEEEETTC----CCHHHHHHHHHHTT-TSCEEE-ECCTTSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCC----CCHHHHHHHHHHhc-CCceeE-EEecCCCCCCCCHHHHHHc
Confidence 99999999999999988653 47777766665553 258754 43 3211124777777777
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.016 Score=55.05 Aligned_cols=124 Identities=17% Similarity=0.097 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC--------cCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC---CCHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE--------GQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS---NSTREA 142 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE--------~~~LT~~Er~~li~~~v~~~---~grvpViagvg~---~st~~a 142 (359)
+.+...+.++.+++.|+.|+-+=+.++. -...+.+|..+-++.+++.. +...-|++=+-+ ...+++
T Consensus 101 ~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeA 180 (307)
T 3lye_A 101 GPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEEC 180 (307)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHH
Confidence 4667788999999999999999887642 34678888777777777654 345556665543 357799
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeC-CCCCCCCCCHHHHHHH
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNV-PSRTGQDIPPRVIHTM 206 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~-P~~tg~~ls~e~l~~L 206 (359)
|++++.+.++|||.+++-.+ .+.+++.++-+.+. ..|++ .|. +.-..-.++.+.+++|
T Consensus 181 i~Ra~ay~eAGAD~ifi~~~----~~~~~~~~i~~~~~-~~Pv~-~n~~~~g~~p~~t~~eL~~l 239 (307)
T 3lye_A 181 IERLRAARDEGADVGLLEGF----RSKEQAAAAVAALA-PWPLL-LNSVENGHSPLITVEEAKAM 239 (307)
T ss_dssp HHHHHHHHHTTCSEEEECCC----SCHHHHHHHHHHHT-TSCBE-EEEETTSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCC----CCHHHHHHHHHHcc-CCcee-EEeecCCCCCCCCHHHHHHc
Confidence 99999999999999988533 57788777777664 35874 343 3211124777777776
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0095 Score=58.96 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC--------
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS-------- 136 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~-------- 136 (359)
+.....++++.++++|+.|+-+=-.+ |--...+.+|..+-++.+++.. +...-|++=+-+
T Consensus 161 ~~~nv~~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vIiARTDa~~a~li~s 240 (429)
T 1f8m_A 161 GALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITS 240 (429)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESC
T ss_pred CcHHHHHHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEEEEEechhhhccccc
Confidence 44568999999999999999874443 3445788999888888888765 334445554443
Q ss_pred -----------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEEeC-
Q 018253 137 -----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TIIYNV- 190 (359)
Q Consensus 137 -----------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P--iiiYn~- 190 (359)
..++++|++++.+.+ |||.+.+-++. ++.+++.++-+.|....| ++.||.
T Consensus 241 ~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e~~~---~~~eei~~f~~~v~~~~P~~~La~n~s 316 (429)
T 1f8m_A 241 DVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWMETGT---PDLEAARQFSEAVKAEYPDQMLAYNCS 316 (429)
T ss_dssp CCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECCSS---CCHHHHHHHHHHHHTTCTTCEEEEECC
T ss_pred cccccccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeCCCC---CCHHHHHHHHHHhcccCCCceeecCCC
Confidence 468999999999988 99999875332 688999999999875556 678986
Q ss_pred CCCC-CCCCCHHHHHH
Q 018253 191 PSRT-GQDIPPRVIHT 205 (359)
Q Consensus 191 P~~t-g~~ls~e~l~~ 205 (359)
|..+ ...++++.+++
T Consensus 317 Psf~w~~~~~~~~~~~ 332 (429)
T 1f8m_A 317 PSFNWKKHLDDATIAK 332 (429)
T ss_dssp TTSCHHHHCCHHHHHH
T ss_pred CCCCcccccchhhHhH
Confidence 5432 11255555544
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.014 Score=57.70 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC---------ccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC--------
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT---------TGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS-------- 136 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs---------tGE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~-------- 136 (359)
+.....++++.+++.|+.|+-+=-. .+.-...+.+|..+-++.+++.. +...-|++=+-+
T Consensus 165 ~~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s 244 (439)
T 3i4e_A 165 GVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITS 244 (439)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESC
T ss_pred ccHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCccccccccc
Confidence 4457889999999999999987443 34556788999888887777654 444555654543
Q ss_pred -----------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-
Q 018253 137 -----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV- 190 (359)
Q Consensus 137 -----------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~- 190 (359)
..++++|++++.+.+ |||.+++-++ .++.+++.++-+.|... .+++.||.
T Consensus 245 ~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~---~~~~eei~~f~~~v~~~~P~~~l~~~~s 320 (439)
T 3i4e_A 245 DIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETG---KPDLEYAKKFAEAIHKQFPGKLLSYNCS 320 (439)
T ss_dssp CCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCS---SCCHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred ccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCC---CCCHHHHHHHHHHhcccCCceEEeeCCC
Confidence 469999999999998 9999998654 36889999999998764 46788985
Q ss_pred CCCC-CCCCCHHHHH
Q 018253 191 PSRT-GQDIPPRVIH 204 (359)
Q Consensus 191 P~~t-g~~ls~e~l~ 204 (359)
|..+ ...++++.++
T Consensus 321 Psfnw~~~~~~~~~~ 335 (439)
T 3i4e_A 321 PSFNWKKNLDDATIA 335 (439)
T ss_dssp SSSCHHHHSCHHHHH
T ss_pred CCCcCcccCCHHHHH
Confidence 5432 1125555433
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.018 Score=54.40 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=91.9
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCc--------c--CcCCCCHHHHHHHHHHHHHhhC-CCcEE
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTT--------G--EGQLMSWDEHIMLIGHTVNCFG-ASVKV 130 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~Gst--------G--E~~~LT~~Er~~li~~~v~~~~-grvpV 130 (359)
|++-+.|=| | +.+...+.+..+++.|+.|+-+=+.+ | .-...+.+|..+-++.+++... +...|
T Consensus 82 viaD~d~Gy---g--~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i 156 (295)
T 1s2w_A 82 ILLDADTGY---G--NFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCI 156 (295)
T ss_dssp EEEECCSSC---S--SHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEE
T ss_pred EEecCCCCC---C--CHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEE
Confidence 555554444 2 35677888999999999999987765 3 2456778888888988888753 45556
Q ss_pred EEecCCC----CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 131 IGNTGSN----STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 131 iagvg~~----st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
++=+-+. ..+++|+.++.++++|||++++-++ .++.+++.++-+++....|++ +| |...| ..+.+.+.+|
T Consensus 157 ~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~---~~~~~~~~~i~~~~~~~~P~i-~~-~~~~~-~~~~~eL~~l 230 (295)
T 1s2w_A 157 VARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSK---KADPSDIEAFMKAWNNQGPVV-IV-PTKYY-KTPTDHFRDM 230 (295)
T ss_dssp EEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCC---SSSSHHHHHHHHHHTTCSCEE-EC-CSTTT-TSCHHHHHHH
T ss_pred EEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCC---CCCHHHHHHHHHHcCCCCCEE-Ee-CCCCC-CCCHHHHHHc
Confidence 6644332 3799999999999999999988631 245677777777775447985 55 43223 3454444444
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.019 Score=54.77 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc--------cCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCCC---CHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT--------GEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGSN---STREAIH 144 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst--------GE~~~LT~~Er~~li~~~v~~~~-grvpViagvg~~---st~~ai~ 144 (359)
+.+...+.+..+++.|+.|+-+=+.. |--...+.+|..+-++.+++... +...|++=+-+. ..+++|+
T Consensus 114 ~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~ 193 (318)
T 1zlp_A 114 GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIR 193 (318)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHH
Confidence 77888899999999999999986655 33346788888888888888763 455566544432 2379999
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC-CCCCCCHHHHHHH
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR-TGQDIPPRVIHTM 206 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~-tg~~ls~e~l~~L 206 (359)
.++.++++|||++++-.+ ++.+++.++-+++. .|++. |.-.. ..-.++.+.+.+|
T Consensus 194 Ra~Ay~eAGAd~i~~e~~----~~~e~~~~i~~~l~--~P~la-n~~~~g~~~~~~~~eL~~l 249 (318)
T 1zlp_A 194 RANLYKEAGADATFVEAP----ANVDELKEVSAKTK--GLRIA-NMIEGGKTPLHTPEEFKEM 249 (318)
T ss_dssp HHHHHHHTTCSEEEECCC----CSHHHHHHHHHHSC--SEEEE-EECTTSSSCCCCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCC----CCHHHHHHHHHhcC--CCEEE-EeccCCCCCCCCHHHHHHc
Confidence 999999999999998643 56666655554442 68766 53211 1134676666665
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.013 Score=55.35 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc----------CcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCCC----CHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG----------EGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGSN----STRE 141 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG----------E~~~LT~~Er~~li~~~v~~~~-grvpViagvg~~----st~~ 141 (359)
+.+...+.+..+++.|+.|+-+=+.++ .-...+.+|..+-++.+++... +...|++=+-+. ..++
T Consensus 88 ~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ 167 (290)
T 2hjp_A 88 NAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQE 167 (290)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHH
T ss_pred CHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHH
Confidence 677888999999999999999877652 3446677788888888888642 456666644332 3799
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEec
Q 018253 142 AIHATEQGFAVGMHAALHIN-PYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~p-P~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ 217 (359)
+|+.++.++++|||++++-. + ++.+++.++-+++....|++. |.- .+..++. .+|.+..++.-+-+
T Consensus 168 ai~Ra~ay~eAGAd~i~~e~~~----~~~~~~~~i~~~~~~~vP~i~-n~~--~~~~~~~---~eL~~lG~v~~v~~ 234 (290)
T 2hjp_A 168 AVRRGQAYEEAGADAILIHSRQ----KTPDEILAFVKSWPGKVPLVL-VPT--AYPQLTE---ADIAALSKVGIVIY 234 (290)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC----SSSHHHHHHHHHCCCSSCEEE-CGG--GCTTSCH---HHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEeCCCC----CCHHHHHHHHHHcCCCCCEEE-ecc--CCCCCCH---HHHHhcCCeeEEEe
Confidence 99999999999999999854 3 455777666665543379876 532 1233554 45555443333333
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.026 Score=55.79 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC--------
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS-------- 136 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~-------- 136 (359)
+.....+.++.+++.|+.|+.+=-.+ +.-...+.+|..+-++.+++.. +...-|++=+-+
T Consensus 165 ~~~~v~~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s 244 (435)
T 3lg3_A 165 GVLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTS 244 (435)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESC
T ss_pred CcHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCcccccccc
Confidence 44467899999999999999985444 3455678898888777777654 445556665543
Q ss_pred -----------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-
Q 018253 137 -----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV- 190 (359)
Q Consensus 137 -----------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~- 190 (359)
..++++|++++.+.+ |||.+.+-++ .++.+++.++-+.|... ..++.||.
T Consensus 245 ~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~---~~~~~ei~~f~~~v~~~~P~~~La~~~s 320 (435)
T 3lg3_A 245 DCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETS---TPDLALAKRFADAVHAQFPGKLLAYNCS 320 (435)
T ss_dssp CCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCS---SCCHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred ccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCC---CCCHHHHHHHHHHhccccCCeEEEeCCC
Confidence 569999999999998 9999998654 36889999999998764 45788986
Q ss_pred CCCC-CCCCCHHHHH
Q 018253 191 PSRT-GQDIPPRVIH 204 (359)
Q Consensus 191 P~~t-g~~ls~e~l~ 204 (359)
|+.+ ...++++.++
T Consensus 321 Psfnw~~~~~d~~~~ 335 (435)
T 3lg3_A 321 PSFNWKKNLTDQQIA 335 (435)
T ss_dssp SSSCHHHHSCHHHHH
T ss_pred CCccccccCCHHHHH
Confidence 5432 1136665553
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.016 Score=54.20 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc--cCcCCCCHHHHHHHHHHHHHhhC---CCcEEEEecCC----------CCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT--GEGQLMSWDEHIMLIGHTVNCFG---ASVKVIGNTGS----------NSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst--GE~~~LT~~Er~~li~~~v~~~~---grvpViagvg~----------~st~ 140 (359)
-+.+...+.+..+++.|+.|+-+=+.+ +.-...+.+|..+-++.+++... ....|++=+-+ ...+
T Consensus 89 ~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~ 168 (275)
T 2ze3_A 89 HAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLA 168 (275)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHH
Confidence 356778899999999999999998876 34567789999999999888743 23344443433 1479
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
++|+.++.++++|||++++-.+ ++.+++.++-+++. .|+. ++. ..-.++.+.+.+|
T Consensus 169 ~ai~Ra~ay~eAGAd~i~~e~~----~~~~~~~~i~~~~~--~P~n-~~~---~~~~~~~~eL~~l 224 (275)
T 2ze3_A 169 ETVRRGQAYADAGADGIFVPLA----LQSQDIRALADALR--VPLN-VMA---FPGSPVPRALLDA 224 (275)
T ss_dssp HHHHHHHHHHHTTCSEEECTTC----CCHHHHHHHHHHCS--SCEE-EEC---CTTSCCHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHhcC--CCEE-Eec---CCCCCCHHHHHHc
Confidence 9999999999999999887543 56666655544442 6873 442 1124555555554
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.054 Score=51.08 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc--------CcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCC---CCHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG--------EGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGS---NSTREAI 143 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG--------E~~~LT~~Er~~li~~~v~~~~-grvpViagvg~---~st~~ai 143 (359)
-+.+...+.+..+++.|+.|+-+-+.++ --...+.+|..+-++.+++... +...|++=+.+ ...+++|
T Consensus 91 ~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai 170 (295)
T 1xg4_A 91 SSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAI 170 (295)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHH
Confidence 3677888999999999999999987763 2346788899889989888753 45566665543 2348999
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC-CCCCCCHHHHHHH
Q 018253 144 HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR-TGQDIPPRVIHTM 206 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~-tg~~ls~e~l~~L 206 (359)
+.++.++++|||++++-.+ ++.+++.++-+++ ..|++. |.-.. ..-.++.+.+.++
T Consensus 171 ~ra~ay~eAGAd~i~~e~~----~~~~~~~~i~~~~--~iP~~~-N~~~~g~~p~~~~~eL~~~ 227 (295)
T 1xg4_A 171 ERAQAYVEAGAEMLFPEAI----TELAMYRQFADAV--QVPILA-NITEFGATPLFTTDELRSA 227 (295)
T ss_dssp HHHHHHHHTTCSEEEETTC----CSHHHHHHHHHHH--CSCBEE-ECCSSSSSCCCCHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEeCC----CCHHHHHHHHHHc--CCCEEE-EecccCCCCCCCHHHHHHc
Confidence 9999999999999998643 4666666655555 268755 43210 1123565555554
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.084 Score=48.69 Aligned_cols=182 Identities=11% Similarity=0.057 Sum_probs=103.9
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcC----------------CCCHHHHHHHHHHHHHhh
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ----------------LMSWDEHIMLIGHTVNCF 124 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~----------------~LT~~Er~~li~~~v~~~ 124 (359)
..+.+.+| -|..|.+...++++.|.+.|+|.|-++...+.-. -+|.+.-.++++.+.+..
T Consensus 17 ~~~i~~i~----~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~ 92 (262)
T 2ekc_A 17 KALVSYLM----VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF 92 (262)
T ss_dssp CEEEEEEE----TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred ceEEEEec----CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 34444455 5668889999999999999999999866554311 144455556677776654
Q ss_pred CCCcEEEEecCCCCHHHH---HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCH
Q 018253 125 GASVKVIGNTGSNSTREA---IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPP 200 (359)
Q Consensus 125 ~grvpViagvg~~st~~a---i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~ 200 (359)
+ ++|+++= +..++-.+ -++++.+.++|+|++++. - ...+++.++.+.+-+. +.++..-.|. -+.
T Consensus 93 ~-~~Pi~~m-~y~n~v~~~g~~~f~~~~~~aG~dgvii~--d---l~~ee~~~~~~~~~~~gl~~i~l~~p~-----t~~ 160 (262)
T 2ekc_A 93 P-DIPFLLM-TYYNPIFRIGLEKFCRLSREKGIDGFIVP--D---LPPEEAEELKAVMKKYVLSFVPLGAPT-----STR 160 (262)
T ss_dssp T-TSCEEEE-CCHHHHHHHCHHHHHHHHHHTTCCEEECT--T---CCHHHHHHHHHHHHHTTCEECCEECTT-----CCH
T ss_pred C-CCCEEEE-ecCcHHHHhhHHHHHHHHHHcCCCEEEEC--C---CCHHHHHHHHHHHHHcCCcEEEEeCCC-----CCH
Confidence 2 5788773 22233222 578888999999998873 2 2347777777666554 3332222232 456
Q ss_pred HHHHHHhc-CCCeE---------EEeccCc-h---h---hHhhhhCCceEEEecCC-chhhhhhhhcCCceeecccc
Q 018253 201 RVIHTMAQ-SPNLA---------GVKECVG-N---D---RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 201 e~l~~La~-~pniv---------GiK~ss~-d---~---~l~~~~~~~~~v~~G~d-~~~~~~~l~~Ga~G~is~~a 259 (359)
+.+.++++ ...++ |...... . . ++++..+-.+.+=.|-. ..-... +..|+||+|.|++
T Consensus 161 ~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSa 236 (262)
T 2ekc_A 161 KRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSA 236 (262)
T ss_dssp HHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHH
T ss_pred HHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHH
Confidence 77777763 33333 2332211 1 1 23333332333322332 223333 6789999998865
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.015 Score=53.90 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHHHHHHCCCCEEEEccCcc--CcCCCCHHHHHHHHHHHHHhhCC-CcE--EEEecCC---------CCHHHHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTG--EGQLMSWDEHIMLIGHTVNCFGA-SVK--VIGNTGS---------NSTREAIHATE 147 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstG--E~~~LT~~Er~~li~~~v~~~~g-rvp--Viagvg~---------~st~~ai~la~ 147 (359)
.+.+..+++.|++|+-+=|.++ .-...+.+|..+-++.+++.... .+| |++-+.. ...+++|+.++
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~ 175 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIK 175 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHH
Confidence 7888888899999999988751 23456888888999888887432 345 7766653 24899999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
.++++|||++++--+ ++.+++. +|.++ .|+.+--.|...-..++.+.+.+|
T Consensus 176 a~~eAGAd~i~~e~~----~~~~~~~----~i~~~~~~P~n~~~~~~~~~p~~~~~eL~~l 228 (255)
T 2qiw_A 176 LMEQAGARSVYPVGL----STAEQVE----RLVDAVSVPVNITAHPVDGHGAGDLATLAGL 228 (255)
T ss_dssp HHHHHTCSEEEECCC----CSHHHHH----HHHTTCSSCBEEECBTTTBBTTBCHHHHHHT
T ss_pred HHHHcCCcEEEEcCC----CCHHHHH----HHHHhCCCCEEEEecCCCCCCCCCHHHHHHc
Confidence 999999999998432 5555544 44444 687543334311123677777776
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.046 Score=54.04 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC--------
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS-------- 136 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~-------- 136 (359)
+.....+.++.++++|+.|+-+=-.+ +--...+.+|..+-++.+++.. +...-|++=+-+
T Consensus 158 ~~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s 237 (433)
T 3eol_A 158 DPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTS 237 (433)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCcccccccc
Confidence 34468899999999999999875444 3456678899888787777664 345556665543
Q ss_pred -------------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEe
Q 018253 137 -------------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYN 189 (359)
Q Consensus 137 -------------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn 189 (359)
..++++|++++.+.+ |||.+.+-++ .++.+++.++-+.|... .+++.||
T Consensus 238 ~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~---~~~~eei~~f~~~v~~~~P~~~L~~~ 313 (433)
T 3eol_A 238 DIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETS---KPDLAQARRFAEAVHKAHPGKLLAYN 313 (433)
T ss_dssp CCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCS---SCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CcccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCC---CCCHHHHHHHHHHhcccCCCcccccC
Confidence 468999999999998 9999998654 46889999999998764 4578888
Q ss_pred C-CC
Q 018253 190 V-PS 192 (359)
Q Consensus 190 ~-P~ 192 (359)
. |+
T Consensus 314 ~sPs 317 (433)
T 3eol_A 314 CSPS 317 (433)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5 53
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=96.34 E-value=0.2 Score=46.21 Aligned_cols=185 Identities=12% Similarity=0.055 Sum_probs=103.8
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCC----------------CCHHHHHHHHHHHHHh
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL----------------MSWDEHIMLIGHTVNC 123 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~----------------LT~~Er~~li~~~v~~ 123 (359)
+..+.+.+| .|..|.+.+.+.++.+.+.|+|.|-+....++-.. +|.+.-.++++.+.+.
T Consensus 16 ~~~~i~~i~----~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~ 91 (268)
T 1qop_A 16 EGAFVPFVT----LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK 91 (268)
T ss_dssp CCEEEEEEE----TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEee----CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 345555555 56688899999999999999999998765543211 2233334667666655
Q ss_pred hCCCcEEEEecCCCCHH---HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCC
Q 018253 124 FGASVKVIGNTGSNSTR---EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIP 199 (359)
Q Consensus 124 ~~grvpViagvg~~st~---~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls 199 (359)
. -++||++=+.. +.- ..-+.++.+.++|+|++.+. .. ..+++.++.+.+-+. +..+..=.|. -+
T Consensus 92 ~-~~~Pv~lm~y~-n~v~~~g~~~~~~~~~~aGadgii~~--d~---~~e~~~~~~~~~~~~g~~~i~l~~p~-----t~ 159 (268)
T 1qop_A 92 H-PTIPIGLLMYA-NLVFNNGIDAFYARCEQVGVDSVLVA--DV---PVEESAPFRQAALRHNIAPIFICPPN-----AD 159 (268)
T ss_dssp C-SSSCEEEEECH-HHHHTTCHHHHHHHHHHHTCCEEEET--TC---CGGGCHHHHHHHHHTTCEEECEECTT-----CC
T ss_pred C-CCCCEEEEEcc-cHHHHhhHHHHHHHHHHcCCCEEEEc--CC---CHHHHHHHHHHHHHcCCcEEEEECCC-----CC
Confidence 1 25787652211 111 12577888899999998874 22 125566666666555 3433333442 45
Q ss_pred HHHHHHHhc-CCCeEEEe---------ccCc--h-h---hHhhhhCCceEEEecCC-chhhhhhhhcCCceeeccccc
Q 018253 200 PRVIHTMAQ-SPNLAGVK---------ECVG--N-D---RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 200 ~e~l~~La~-~pnivGiK---------~ss~--d-~---~l~~~~~~~~~v~~G~d-~~~~~~~l~~Ga~G~is~~an 260 (359)
.+.++++++ ...++.+= .... . . ++++..+-.+.+=.|-. ..-...++..|+||+|.|++-
T Consensus 160 ~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai 237 (268)
T 1qop_A 160 DDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAI 237 (268)
T ss_dssp HHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 677777763 44444331 1101 1 1 23333322333322333 122233367899999998663
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.039 Score=51.90 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc-------CcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecC--CCCHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG-------EGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG--SNSTREAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG-------E~~~LT~~Er~~li~~~v~~~~-grvpViagvg--~~st~~ai~la 146 (359)
+.+...+.+..+++.|+.|+-+=+.++ .+...+.+|..+-++.+++... +...|++=+- ....+++|+.+
T Consensus 95 ~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra 174 (287)
T 3b8i_A 95 NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRT 174 (287)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHH
Confidence 678888999999999999999877753 2227899999999999998753 3455665432 34568999999
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
+.++++|||++++-.+ ++.+++.++-+++ ..|+++-. ...+ -.++.+.+.+|
T Consensus 175 ~ay~eAGAd~i~~e~~----~~~~~~~~i~~~~--~~P~ii~~-~g~~-~~~~~~eL~~l 226 (287)
T 3b8i_A 175 LAYQEAGADGICLVGV----RDFAHLEAIAEHL--HIPLMLVT-YGNP-QLRDDARLARL 226 (287)
T ss_dssp HHHHHTTCSEEEEECC----CSHHHHHHHHTTC--CSCEEEEC-TTCG-GGCCHHHHHHT
T ss_pred HHHHHcCCCEEEecCC----CCHHHHHHHHHhC--CCCEEEeC-CCCC-CCCCHHHHHHc
Confidence 9999999999988642 5555554433332 16988421 1122 24666666665
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.096 Score=48.00 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----------------cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----------------~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
.|..|.+.+.+.++.+.+.|++.|-+....++ -.-+|.++-.++++.+.+. -++||++-...
T Consensus 26 ~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~--~~~Pv~~m~~~ 103 (262)
T 1rd5_A 26 AGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE--LSCPVVLLSYY 103 (262)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG--CSSCEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCEEEEecC
Confidence 45567799999999999999999988654432 1226788888888887765 36888764322
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivG 214 (359)
+... ....+.+.++|+|++.+. .. +.+++.++.+.+.+. ++.++.=.|. -+.+.++++.+ ...+++
T Consensus 104 -~~~~-~~~~~~a~~aGadgv~v~--d~---~~~~~~~~~~~~~~~g~~~i~~~a~~-----t~~e~~~~~~~~~~g~v~ 171 (262)
T 1rd5_A 104 -KPIM-FRSLAKMKEAGVHGLIVP--DL---PYVAAHSLWSEAKNNNLELVLLTTPA-----IPEDRMKEITKASEGFVY 171 (262)
T ss_dssp -HHHH-SCCTHHHHHTTCCEEECT--TC---BTTTHHHHHHHHHHTTCEECEEECTT-----SCHHHHHHHHHHCCSCEE
T ss_pred -cHHH-HHHHHHHHHcCCCEEEEc--CC---ChhhHHHHHHHHHHcCCceEEEECCC-----CCHHHHHHHHhcCCCeEE
Confidence 2221 111233889999998873 11 124466666666554 4433332332 34566666653 333333
Q ss_pred E---------eccCch--h----hHhhhhCCceEEEecCC-chhhhhhhhcCCceeeccccc
Q 018253 215 V---------KECVGN--D----RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 215 i---------K~ss~d--~----~l~~~~~~~~~v~~G~d-~~~~~~~l~~Ga~G~is~~an 260 (359)
+ |..... . ++++..+-.+.+-.|-. ..-....+..|++|++.|++-
T Consensus 172 ~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai 233 (262)
T 1rd5_A 172 LVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAM 233 (262)
T ss_dssp EECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred EecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 2 211111 1 12222233444444544 233344467899999988663
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.028 Score=52.90 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC----------------------HHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS----------------------WDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT----------------------~~Er~~li~~~v~~~~grvpViag 133 (359)
+|.+.+.++++.+.+.|+++|.+-+++++...+. ...-.++++.+.+.+++++|||+.
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~ 248 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEE
Confidence 5778888899999999999999998874321111 122356777777777778999976
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
=|=.+.+++.+... +|||+|++-.+.+.
T Consensus 249 GGI~~~~da~~~l~----~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 249 GGIETGQDAFEHLL----CGATMLQIGTALHK 276 (311)
T ss_dssp SSCCSHHHHHHHHH----HTCSEEEECHHHHH
T ss_pred CCCCCHHHHHHHHH----cCCCEEEEchHHHh
Confidence 55557777777663 69999999988764
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.16 Score=46.96 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-------CCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-------GSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-------g~~st~~ai~la~~a 149 (359)
..+.++++++..++.|++++++.-. +++.+. ..++++++.+ +...++.-+..++.|
T Consensus 39 ~~~di~~~~~~a~~~~~~av~v~~~--------------~v~~~~---~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~A 101 (263)
T 1w8s_A 39 DSADPEYILRLARDAGFDGVVFQRG--------------IAEKYY---DGSVPLILKLNGKTTLYNGEPVSVANCSVEEA 101 (263)
T ss_dssp GGGCHHHHHHHHHHHTCSEEEECHH--------------HHHHHC---CSSSCEEEECEECCTTCCSSCCCEESSCHHHH
T ss_pred chhhHHHHHHHHHhhCCCEEEECHH--------------HHHHhh---cCCCcEEEEEeCCCCcCCCCccchHHHHHHHH
Confidence 4677889999999999999997722 233333 3346766643 222233334567788
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC----CHHHHHH---Hh-c-CCCeEEE
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI----PPRVIHT---MA-Q-SPNLAGV 215 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~l----s~e~l~~---La-~-~pnivGi 215 (359)
.+.|||++-+.- ++...+.+++++..+++.+. +|+|+-..+ -|.++ +++.+.+ ++ + -..++++
T Consensus 102 i~~Ga~~v~~~~-nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt 178 (263)
T 1w8s_A 102 VSLGASAVGYTI-YPGSGFEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIALELGADAMKI 178 (263)
T ss_dssp HHTTCSEEEEEE-CTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHCCCCEEEEEE-ecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 889999997652 33445677788888888653 698886555 24444 7777755 44 2 2456555
Q ss_pred eccCchhh---HhhhhCC-ceEEEecCCc----h---hhhhhhhcCCceeecc
Q 018253 216 KECVGNDR---VEHYTGN-GIVVWSGNDD----Q---CHDARWNHGATGVISV 257 (359)
Q Consensus 216 K~ss~d~~---l~~~~~~-~~~v~~G~d~----~---~~~~~l~~Ga~G~is~ 257 (359)
..+.+-.. +.+..+. .+....|-.. . .+...+..|++|+..+
T Consensus 179 ~~~~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 179 KYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp ECCSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred cCCCCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 54321122 3333333 4554445431 1 2223357899988766
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.068 Score=53.22 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCC----------C----HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM----------S----WDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~L----------T----~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
++.+.+..+++.+.+.|++||.+-++|.+...+ | ..--.+++..+.+.+++++|||+.=|=.+.++
T Consensus 308 ~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~D 387 (443)
T 1tv5_A 308 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 387 (443)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHH
Confidence 566678889999999999999999998853222 1 12235788888888888999987444456777
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.+..+ +|||+|++-.++.+
T Consensus 388 A~e~l~----aGAd~Vqigrall~ 407 (443)
T 1tv5_A 388 ALEKIE----AGASVCQLYSCLVF 407 (443)
T ss_dssp HHHHHH----TTEEEEEESHHHHH
T ss_pred HHHHHH----cCCCEEEEcHHHHh
Confidence 777664 89999999887543
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.051 Score=53.64 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCC----------CC----HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL----------MS----WDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~----------LT----~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+|.+.+..+++.+.+.|++||.+.++|++-.. || ..--.+++..+.+.+++++|||+.=|=.+.++
T Consensus 280 ~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eD 359 (415)
T 3i65_A 280 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 359 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH
Confidence 45667899999999999999999999985321 11 12335788888888888999997555556777
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.+..+ +|||+|++-.+.++
T Consensus 360 a~e~l~----aGAd~VqIgra~l~ 379 (415)
T 3i65_A 360 ALEKIE----AGASVCQLYSCLVF 379 (415)
T ss_dssp HHHHHH----HTEEEEEESHHHHH
T ss_pred HHHHHH----cCCCEEEEcHHHHh
Confidence 777664 69999999887653
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=95.55 E-value=1.1 Score=41.39 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=102.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCc------cCc----------CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTT------GEG----------QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~Gst------GE~----------~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
--|.-|++.+.+.++.|.++|+|.|=+.=-. |.. .-+|.+.-.++++.+.+. .-++|++.=+.
T Consensus 25 ~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~-~~~~Pivlm~Y 103 (267)
T 3vnd_A 25 TIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQ-HPDMPIGLLLY 103 (267)
T ss_dssp ETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCCEEEEEC
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEEEEec
Confidence 3567899999999999999999988766111 110 115566666777776654 13678776444
Q ss_pred CCCHH--HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCC
Q 018253 136 SNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPN 211 (359)
Q Consensus 136 ~~st~--~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pn 211 (359)
.+... ..-++++.++++|+|++++. .. ..++..++.+.+.+. +..+..=.|. -+.+.++++++ .+.
T Consensus 104 ~npv~~~g~e~f~~~~~~aGvdgvii~--Dl---p~ee~~~~~~~~~~~gl~~i~liaP~-----t~~eri~~i~~~~~g 173 (267)
T 3vnd_A 104 ANLVFANGIDEFYTKAQAAGVDSVLIA--DV---PVEESAPFSKAAKAHGIAPIFIAPPN-----ADADTLKMVSEQGEG 173 (267)
T ss_dssp HHHHHHHCHHHHHHHHHHHTCCEEEET--TS---CGGGCHHHHHHHHHTTCEEECEECTT-----CCHHHHHHHHHHCCS
T ss_pred CcHHHHhhHHHHHHHHHHcCCCEEEeC--CC---CHhhHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHHhCCC
Confidence 33222 23678999999999998884 22 225566666655554 3333222442 34688888874 455
Q ss_pred eEEE---eccCch-----h-------hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeecccc
Q 018253 212 LAGV---KECVGN-----D-------RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 259 (359)
Q Consensus 212 ivGi---K~ss~d-----~-------~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~a 259 (359)
++.+ .-.+|. . ++++.. +..+..|..- .-....+..|+||+|.|++
T Consensus 174 fvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 174 YTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSA 237 (267)
T ss_dssp CEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred cEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHH
Confidence 5555 221121 1 122222 3445555431 1222146789999999864
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.07 Score=50.75 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCc------------CCCC----HHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG------------QLMS----WDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~------------~~LT----~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+.++++.+.+.|+++|.+.+++... .-++ ..-..++++.+.+.+++++|||+.=|=.+.
T Consensus 222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~ 301 (336)
T 1f76_A 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSV 301 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 677788899999999999999998876311 1122 223457777888888888999974444466
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+++.+..+ +|||+|++..++.+
T Consensus 302 ~da~~~l~----~GAd~V~igr~~l~ 323 (336)
T 1f76_A 302 IAAREKIA----AGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHH----HTCSEEEESHHHHH
T ss_pred HHHHHHHH----CCCCEEEeeHHHHh
Confidence 66666554 69999999877543
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.084 Score=49.68 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=76.7
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---C------CCCHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---G------SNSTREAIHATE 147 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g------~~st~~ai~la~ 147 (359)
+.++..+++|++.+-+..++.|.+ .+|.+|-.+.++.+++.+.. .+.|-+.+ . ..+.++++++++
T Consensus 87 ~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~ 166 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVAR 166 (302)
T ss_dssp HHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHH
Confidence 566777889999999988888864 48999988888888886542 34553222 1 247889999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC---CeEEE
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIY 188 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~---PiiiY 188 (359)
.+.+.|+|.+.+.. .....+++++.+.++.|.+.. |+.++
T Consensus 167 ~~~~~G~d~i~l~D-T~G~~~P~~~~~lv~~l~~~~~~~~l~~H 209 (302)
T 2ftp_A 167 ELQQMGCYEVSLGD-TIGVGTAGATRRLIEAVASEVPRERLAGH 209 (302)
T ss_dssp HHHHTTCSEEEEEE-SSSCCCHHHHHHHHHHHTTTSCGGGEEEE
T ss_pred HHHHcCCCEEEEeC-CCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999877763 333467888888888888764 45554
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.41 Score=45.89 Aligned_cols=127 Identities=10% Similarity=0.013 Sum_probs=79.9
Q ss_pred CCHHHHHHHHH-------HHHHCCCCEEEEccCcc---------------CcCCCCHHHHH----HHHHHHHHhhCCCcE
Q 018253 76 FDLEAYDDLVN-------MQIVNGAEGMIVGGTTG---------------EGQLMSWDEHI----MLIGHTVNCFGASVK 129 (359)
Q Consensus 76 ID~~~l~~li~-------~li~~Gv~Gl~v~GstG---------------E~~~LT~~Er~----~li~~~v~~~~grvp 129 (359)
+..+.++++++ ...++|.|||=+.+..| ..+-=|.+.|. ++++.+++.++.+.|
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~p 221 (349)
T 3hgj_A 142 LDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELP 221 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCce
Confidence 55555555554 45579999999998774 11122566775 455566666666778
Q ss_pred EEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC----C-CHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Q 018253 130 VIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGK----T-SLEGLISHFDSVLSM--GPTIIYNVPSRTG 195 (359)
Q Consensus 130 Viagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~----~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg 195 (359)
|.+=++ +.+.++++++++..++.|+|.+-+....+.. + .+..-..+.+.|.+. .||+. .|
T Consensus 222 V~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~------~G 295 (349)
T 3hgj_A 222 LFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGA------VG 295 (349)
T ss_dssp EEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEE------CS
T ss_pred EEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEE------EC
Confidence 877444 3578999999999999999999887532211 0 111123455555554 56553 23
Q ss_pred CCCCHHHHHHHhc
Q 018253 196 QDIPPRVIHTMAQ 208 (359)
Q Consensus 196 ~~ls~e~l~~La~ 208 (359)
---+++...++.+
T Consensus 296 gi~t~e~a~~~l~ 308 (349)
T 3hgj_A 296 LITTPEQAETLLQ 308 (349)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3346777777664
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=95.23 E-value=0.081 Score=51.40 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCc------------CCCC----HHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG------------QLMS----WDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~------------~~LT----~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+|.+.+..+++.+.+.|++||.+-++|-.. --|| ..--.+++..+.+.+++++|||+.=|=.+.
T Consensus 231 ~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~ 310 (367)
T 3zwt_A 231 LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSG 310 (367)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCH
Confidence 566788999999999999999998887321 1122 122357888888888889999975555567
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+++.+..+ +|||+|++-.+.
T Consensus 311 ~da~~~l~----~GAd~V~vgra~ 330 (367)
T 3zwt_A 311 QDALEKIR----AGASLVQLYTAL 330 (367)
T ss_dssp HHHHHHHH----HTCSEEEESHHH
T ss_pred HHHHHHHH----cCCCEEEECHHH
Confidence 77777665 699999999886
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.073 Score=49.66 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=87.3
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC---------
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS--------- 136 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~--------- 136 (359)
.=|||- ....+.+...+.+.++++.|++|+-+=|. +|..+.++.+++ .++||+.++|-
T Consensus 83 aD~pfg-sy~~s~~~a~~na~rl~kaGa~aVklEdg---------~e~~~~I~al~~---agIpV~gHiGLtPQs~~~~g 149 (275)
T 1o66_A 83 SDLPFG-AYQQSKEQAFAAAAELMAAGAHMVKLEGG---------VWMAETTEFLQM---RGIPVCAHIGLTPQSVFAFG 149 (275)
T ss_dssp EECCTT-SSSSCHHHHHHHHHHHHHTTCSEEEEECS---------GGGHHHHHHHHH---TTCCEEEEEESCGGGTTC--
T ss_pred EECCCC-CccCCHHHHHHHHHHHHHcCCcEEEECCc---------HHHHHHHHHHHH---cCCCeEeeeccCceeecccC
Confidence 568884 34467788888888899999999998776 255555665554 46888855441
Q ss_pred --------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-CCCCCCCCCHHHHHH
Q 018253 137 --------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV-PSRTGQDIPPRVIHT 205 (359)
Q Consensus 137 --------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~-P~~tg~~ls~e~l~~ 205 (359)
...+++++.++.++++|||++++--. + . ++ .++|.++ .|++-.-. |...|+-|=...+.-
T Consensus 150 gf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p-~-~~---a~~it~~l~iP~igIGaG~~~dgQvLV~~D~lG 220 (275)
T 1o66_A 150 GYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV----L-A-EL---AKKVTETVSCPTIGIGAGADCDGQVLVMHDMLG 220 (275)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSEEEEESC----C-H-HH---HHHHHHHCSSCEEEESSCSCSSEEEECHHHHTT
T ss_pred CeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecC----C-H-HH---HHHHHHhCCCCEEEECCCCCCCcceeeHHhhcC
Confidence 23589999999999999999988542 2 2 33 3467665 68887654 666677776666666
Q ss_pred Hh-c-CCCeE
Q 018253 206 MA-Q-SPNLA 213 (359)
Q Consensus 206 La-~-~pniv 213 (359)
|. + .|.++
T Consensus 221 ~~~~~~pkf~ 230 (275)
T 1o66_A 221 IFPGKTAKFV 230 (275)
T ss_dssp CSSSSCCTTC
T ss_pred CCCCCCCCch
Confidence 65 3 47663
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.04 Score=54.03 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=63.0
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++.+.+.|+++|.+.|..|....-... ..+.+..+++.+++++|||+.=|=.+-.++++.. .+|||+|++-.|+
T Consensus 265 ~A~~a~~aGad~I~vs~~ggr~~~~g~~-~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kal----alGAd~V~iGr~~ 339 (392)
T 2nzl_A 265 DAREAVKHGLNGILVSNHGARQLDGVPA-TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKAL----ALGAKAVFVGRPI 339 (392)
T ss_dssp HHHHHHHTTCCEEEECCGGGTSSTTCCC-HHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHH----HTTCSEEEECHHH
T ss_pred HHHHHHHcCCCEEEeCCCCCCcCCCCcC-hHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHH----HhCCCeeEECHHH
Confidence 3677889999999998877743222221 2345556666777789999855544566665443 4899999999998
Q ss_pred CCCC---CHHHHHHHHHHHHhc
Q 018253 164 YGKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~---s~~~l~~yf~~Ia~a 182 (359)
++.. .++++.++++.+.+.
T Consensus 340 l~~~~~~g~~gv~~~l~~l~~e 361 (392)
T 2nzl_A 340 VWGLAFQGEKGVQDVLEILKEE 361 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHH
Confidence 7653 345666666666543
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.037 Score=53.80 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+.+.|+++|.+.+..|....-... -.+++..+++.+++++|||+.=|=.+..++++. ..+|||+|++-.|
T Consensus 241 e~a~~a~~~Gad~I~vs~~ggr~~~~g~~-~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~ka----lalGAd~V~iGr~ 315 (368)
T 2nli_A 241 EDADMAIKRGASGIWVSNHGARQLYEAPG-SFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKA----LASGADVVALGRP 315 (368)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSCSSCCC-HHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHH----HHTTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCCCCCC-hHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHH----HHcCCCEEEECHH
Confidence 34567789999999998877742211111 225555666677778999985554456666544 3489999999999
Q ss_pred CCCCC---CHHHHHHHHHHHHh
Q 018253 163 YYGKT---SLEGLISHFDSVLS 181 (359)
Q Consensus 163 ~y~~~---s~~~l~~yf~~Ia~ 181 (359)
+.+.. .++++.++++.+.+
T Consensus 316 ~l~~~~~~G~~gv~~~l~~l~~ 337 (368)
T 2nli_A 316 VLFGLALGGWQGAYSVLDYFQK 337 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHH
Confidence 87642 34566666665554
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.21 Score=46.62 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=75.3
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEE--Eec-------CCCCHHHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVI--GNT-------GSNSTREAIHAT 146 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpVi--agv-------g~~st~~ai~la 146 (359)
.+.++..+++|++.+.+..+++|.+ .+|.+|-.+.++.+++.+. ..++|- ++. +..+.++.++++
T Consensus 82 ~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 161 (295)
T 1ydn_A 82 MKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVT 161 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence 3456677889999998887776543 4688887777777776543 235554 222 235789999999
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC---CeEEE
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIY 188 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~---PiiiY 188 (359)
+.+.+.|+|.+.+... ....+++++.+.++.|.+.. |+.++
T Consensus 162 ~~~~~~G~d~i~l~Dt-~G~~~P~~~~~lv~~l~~~~~~~~l~~H 205 (295)
T 1ydn_A 162 EQLFSLGCHEVSLGDT-IGRGTPDTVAAMLDAVLAIAPAHSLAGH 205 (295)
T ss_dssp HHHHHHTCSEEEEEET-TSCCCHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred HHHHhcCCCEEEecCC-CCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999998888753 34467888888888888764 45544
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.71 Score=41.50 Aligned_cols=126 Identities=15% Similarity=0.037 Sum_probs=90.3
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTR 140 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~ 140 (359)
+-...++-| +.|.-..+....-++.-++.|++.|-+--.-|..-+=.+++-.+-+..+++.+.+ .+|||.-++-.+.+
T Consensus 55 v~v~~vigF-P~G~~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e 133 (220)
T 1ub3_A 55 FRLVTVVGF-PLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPE 133 (220)
T ss_dssp SEEEEEEST-TTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHH
T ss_pred ceEEEEecC-CCCCCchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHH
Confidence 444555566 4666777888899999999999999777777754444566666677777776654 58899988888889
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCeEEE
Q 018253 141 EAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPTIIY 188 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~PiiiY 188 (359)
+-...+|.+.++|||.|=...-|. ...+.+++..+-+.+....||..-
T Consensus 134 ~i~~a~~ia~eaGADfVKTsTGf~~~gat~~dv~~m~~~vg~~v~Vkaa 182 (220)
T 1ub3_A 134 EIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAA 182 (220)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 999999999999999887765444 334666655555444333566554
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.05 Score=52.59 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=62.9
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++.+.+.|+++|.+.|+.|-...-.. --.+++..+++.+.+++|||+.=|=.+-.++++.. .+|||+|++-.|+
T Consensus 230 ~A~~a~~~GaD~I~vsn~GG~~~d~~~-~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaL----alGA~aV~iGr~~ 304 (352)
T 3sgz_A 230 DAELAMKHNVQGIVVSNHGGRQLDEVS-ASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKAL----ALGARCIFLGRPI 304 (352)
T ss_dssp HHHHHHHTTCSEEEECCGGGTSSCSSC-CHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH----HTTCSEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCccCCCc-cHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH----HcCCCEEEECHHH
Confidence 356678999999999887774221111 12345555666777899999855545666665544 4899999999998
Q ss_pred CCCC---CHHHHHHHHHHHHhc
Q 018253 164 YGKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~---s~~~l~~yf~~Ia~a 182 (359)
.+.. .++++.++++.+.+.
T Consensus 305 l~~l~~~G~~gv~~~l~~l~~e 326 (352)
T 3sgz_A 305 LWGLACKGEDGVKEVLDILTAE 326 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 7642 346666666666543
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.78 Score=41.59 Aligned_cols=188 Identities=14% Similarity=0.089 Sum_probs=107.5
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
..|++|.+.. .|.+....+++.+++.|++.+=+--+| .+-.+.++.+.+..+ + +++|.|.--
T Consensus 33 ~~~vv~Vir~-------~~~~~a~~~a~al~~gGi~~iEvt~~t--------~~a~e~I~~l~~~~~-~--~~iGaGTVl 94 (232)
T 4e38_A 33 ALKVIPVIAI-------DNAEDIIPLGKVLAENGLPAAEITFRS--------DAAVEAIRLLRQAQP-E--MLIGAGTIL 94 (232)
T ss_dssp HHCEEEEECC-------SSGGGHHHHHHHHHHTTCCEEEEETTS--------TTHHHHHHHHHHHCT-T--CEEEEECCC
T ss_pred hCCEEEEEEc-------CCHHHHHHHHHHHHHCCCCEEEEeCCC--------CCHHHHHHHHHHhCC-C--CEEeECCcC
Confidence 3467776543 234678899999999999998774433 234567776677664 3 355655433
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEec
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE 217 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ 217 (359)
+.+.++.|.++|||.++. |.+ ..++.++.++- ..|++ .|+. +++.+.+-.+ =..++.+=-
T Consensus 95 ---t~~~a~~Ai~AGA~fIvs--P~~----~~~vi~~~~~~--gi~~i-------pGv~-TptEi~~A~~~Gad~vK~FP 155 (232)
T 4e38_A 95 ---NGEQALAAKEAGATFVVS--PGF----NPNTVRACQEI--GIDIV-------PGVN-NPSTVEAALEMGLTTLKFFP 155 (232)
T ss_dssp ---SHHHHHHHHHHTCSEEEC--SSC----CHHHHHHHHHH--TCEEE-------CEEC-SHHHHHHHHHTTCCEEEECS
T ss_pred ---CHHHHHHHHHcCCCEEEe--CCC----CHHHHHHHHHc--CCCEE-------cCCC-CHHHHHHHHHcCCCEEEECc
Confidence 377788899999998863 432 35566664431 13333 2433 6655554433 344443311
Q ss_pred c--Cch-hhHhhhhC--CceEEEe--cCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHH
Q 018253 218 C--VGN-DRVEHYTG--NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIE 287 (359)
Q Consensus 218 s--s~d-~~l~~~~~--~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~ 287 (359)
+ .+. ..++++.. +++.++. |-+..-+..++..|+.+++.|+ ++.|.. +.++|+..++.++...+.+
T Consensus 156 a~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs-~l~~~~---~i~~~~~~~i~~~a~~~~~ 228 (232)
T 4e38_A 156 AEASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGT-WMVDKK---LVTNGEWDEIARLTREIVE 228 (232)
T ss_dssp TTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEEC-GGGCHH---HHHTTCHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECc-hhcChH---HhhcCCHHHHHHHHHHHHH
Confidence 1 111 23444332 3444443 5554455667888999877654 455443 3356666666655555544
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.18 Score=47.20 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-EEEEccCc----cCcCCC-CHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAE-GMIVGGTT----GEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQ 148 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~-Gl~v~Gst----GE~~~L-T~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~ 148 (359)
-+.+.+.+.++.+.+.|++ +|-++-+. |.-... +.+...++++.+.+.+ ++||++=+.. .+.++..++++.
T Consensus 103 ~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~Pv~vKi~~~~~~~~~~~~a~~ 180 (311)
T 1jub_A 103 MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKPLGVKLPPYFDLVHFDIMAEI 180 (311)
T ss_dssp SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSCEEEEECCCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHHH
Confidence 5788999999999999999 99987641 211222 6777778887777655 5799885553 367788899999
Q ss_pred HHhCCCCEEEEcC
Q 018253 149 GFAVGMHAALHIN 161 (359)
Q Consensus 149 a~~~Gadav~v~p 161 (359)
++++|+|++.+..
T Consensus 181 ~~~~G~d~i~v~~ 193 (311)
T 1jub_A 181 LNQFPLTYVNSVN 193 (311)
T ss_dssp HTTSCCCEEEECC
T ss_pred HHHcCCcEEEecC
Confidence 9999999998865
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.097 Score=49.19 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEEccCccCcCC---------C---------C----HHHHHHHHHHHHHhhCCCcEEEE
Q 018253 76 FDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQL---------M---------S----WDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 76 ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~---------L---------T----~~Er~~li~~~v~~~~grvpVia 132 (359)
+|.+.+.++++.+.+.| +++|.+.+++|.... + | ...-.+.++.+.+.+ +++|||+
T Consensus 171 ~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~ 249 (314)
T 2e6f_A 171 FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFG 249 (314)
T ss_dssp CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEE
Confidence 57788899999999999 999999988852111 1 1 122346777777777 6899997
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KT 167 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~-~~ 167 (359)
.=|=.+.+++.+.. .+|||+|++..+.+. .|
T Consensus 250 ~GGI~~~~da~~~l----~~GAd~V~ig~~~l~~~p 281 (314)
T 2e6f_A 250 CGGVYSGEDAFLHI----LAGASMVQVGTALQEEGP 281 (314)
T ss_dssp ESSCCSHHHHHHHH----HHTCSSEEECHHHHHHCT
T ss_pred ECCCCCHHHHHHHH----HcCCCEEEEchhhHhcCc
Confidence 55545677777766 369999999888664 44
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.081 Score=50.67 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCEEEEccCcc------------------CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTG------------------EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstG------------------E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
..++.+.+.|+++|.+.++.| ....++..+. +..+.+.+ +++|||+.=|=.+.+++.+
T Consensus 193 ~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~---l~~v~~~~-~~ipvia~GGI~~~~d~~k 268 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAAS---LAEIRSEF-PASTMIASGGLQDALDVAK 268 (349)
T ss_dssp HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHH---HHHHHHHC-TTSEEEEESSCCSHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHH---HHHHHHhc-CCCeEEEECCCCCHHHHHH
Confidence 345677789999999976544 1234555443 33444444 5799998655556777766
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCC---CHHHHHHHHHHHHh
Q 018253 145 ATEQGFAVGMHAALHINPYYGKT---SLEGLISHFDSVLS 181 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~---s~~~l~~yf~~Ia~ 181 (359)
... +|||+|++-.|+++.. .++++.++++.+.+
T Consensus 269 ~l~----~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~ 304 (349)
T 1p0k_A 269 AIA----LGASCTGMAGHFLKALTDSGEEGLLEEIQLILE 304 (349)
T ss_dssp HHH----TTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----cCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 543 7999999999877642 33455555555544
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=94.33 E-value=0.57 Score=45.20 Aligned_cols=127 Identities=11% Similarity=-0.018 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccC----c-----------CCCCHHHHHHH----HHHHHHhhCCCcEEEE--ecC--
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGE----G-----------QLMSWDEHIML----IGHTVNCFGASVKVIG--NTG-- 135 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE----~-----------~~LT~~Er~~l----i~~~v~~~~grvpVia--gvg-- 135 (359)
+.+.+-.+...++|.|||=+.+..|- | +-=|.+.|.++ ++.+++.++.+ ||.+ ...
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-~v~vrls~~~~ 239 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD-RIGIRVSPIGT 239 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG-GEEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCC-cEEEEEccccc
Confidence 45566666677899999999886541 1 12245667554 55555556545 7777 221
Q ss_pred -------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018253 136 -------SNSTREAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 136 -------~~st~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
..+.++++++++.+++.|+|.+-+..+.+.. +. .-.++.+.|.+. .||+.= -| ++++..++
T Consensus 240 ~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~~~~~~~~v~~~~~iPvi~~-----Gg--it~~~a~~ 310 (364)
T 1vyr_A 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKP--YSEAFRQKVRERFHGVIIGA-----GA--YTAEKAED 310 (364)
T ss_dssp BTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC--CCHHHHHHHHHHCCSEEEEE-----SS--CCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCc--ccHHHHHHHHHHCCCCEEEE-----CC--cCHHHHHH
Confidence 2267789999999999999999998754321 11 012455566655 465532 23 48998888
Q ss_pred HhcC--CCeEEE
Q 018253 206 MAQS--PNLAGV 215 (359)
Q Consensus 206 La~~--pnivGi 215 (359)
+.+. -.+|++
T Consensus 311 ~l~~g~aD~V~~ 322 (364)
T 1vyr_A 311 LIGKGLIDAVAF 322 (364)
T ss_dssp HHHTTSCSEEEE
T ss_pred HHHCCCccEEEE
Confidence 8753 344444
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.37 Score=46.85 Aligned_cols=128 Identities=10% Similarity=0.023 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcc----------------CcCCCCHHHHHHH----HHHHHHhhCCCcEEEEecCC--
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIML----IGHTVNCFGASVKVIGNTGS-- 136 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~l----i~~~v~~~~grvpViagvg~-- 136 (359)
+.+.+-.+...++|.|||=+.+..| |+- =|.+.|.++ ++.+++.++.+ ||.+=++.
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yG-GslenR~r~~~eiv~aVr~avg~~-~v~vrls~~~ 243 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYG-GSIENRARFPLEVVDAVAEVFGPE-RVGIRLTPFL 243 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTS-SSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccC-cchhhchHHHHHHHHHHHHHcCCC-cEEEEecccc
Confidence 4555556666789999999987643 222 246677554 55555566545 77775432
Q ss_pred --------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 137 --------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 137 --------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
.+.++++++++.+++.|+|++-+..+.+.......-.++.+.|.+. .||+. + .| ++++...++
T Consensus 244 ~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~-~----Gg--i~~~~a~~~ 316 (377)
T 2r14_A 244 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIY-C----GN--YDAGRAQAR 316 (377)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEE-E----SS--CCHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEE-E----CC--CCHHHHHHH
Confidence 3578899999999999999999987654211000012344555554 46654 2 23 468888887
Q ss_pred hcC--CCeEEE
Q 018253 207 AQS--PNLAGV 215 (359)
Q Consensus 207 a~~--pnivGi 215 (359)
.+. -.+|++
T Consensus 317 l~~g~aD~V~i 327 (377)
T 2r14_A 317 LDDNTADAVAF 327 (377)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCceEEee
Confidence 643 344444
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.49 Score=43.78 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+.+++.+-+.||+..++.++.. +...-+.+ .+++. ++..++|+--++|+--...+++++..+++.+.|+.++-+
T Consensus 49 ~e~~l~~md~~GV~~~V~~~~~~~~~~~~~N~---~~~~~-~~~~p~r~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~~ 124 (291)
T 3irs_A 49 LELMFEEMAAAGIEQGVCVGRNSSVLGSVSNA---DVAAV-AKAYPDKFHPVGSIEAATRKEAMAQMQEILDLGIRIVNL 124 (291)
T ss_dssp HHHHHHHHHHTTCCEEEEECCEETTTEECCHH---HHHHH-HHHSTTTEEEEEECCCSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccccccccHH---HHHHH-HHHCCCcEEEEEecCccCHHHHHHHHHHHHhCCCeEEEE
Confidence 45567777789999988888764 21112233 34433 334566776677776555677777777788999999988
Q ss_pred cCCCC---CCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCC--C-CHHHHHHHh-cCCCeEEEe
Q 018253 160 INPYY---GKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQD--I-PPRVIHTMA-QSPNLAGVK 216 (359)
Q Consensus 160 ~pP~y---~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~--l-s~e~l~~La-~~pnivGiK 216 (359)
.+-++ ...+.+.+...|+...+. +||+++--.. .|-. . .+..+.+++ ++|++..+=
T Consensus 125 ~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~-~~~~~~~~~p~~~~~v~~~~P~l~ivl 188 (291)
T 3irs_A 125 EPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGN-AGPDITYTNPEHIDRVLGDFPDLTVVS 188 (291)
T ss_dssp CGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSSS-CSSSGGGGCHHHHHHHHHHCTTCCEEE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCCC-CCCCCccCCHHHHHHHHHHCCCCEEEe
Confidence 74332 123556778888877776 8999996432 1111 1 245666766 688765443
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.57 Score=44.61 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccC---------------cCCCCHHHHH----HHHHHHHHhhCCCcEEEEecC----
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGE---------------GQLMSWDEHI----MLIGHTVNCFGASVKVIGNTG---- 135 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE---------------~~~LT~~Er~----~li~~~v~~~~grvpViagvg---- 135 (359)
+.+.+-.+...++|.|||=+.+..|- .+-=|.+.|. ++++.+++.+ +.||.+=++
T Consensus 144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v--~~pv~vris~~~~ 221 (338)
T 1z41_A 144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW--DGPLFVRVSASDY 221 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC--CSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc--CCcEEEEecCccc
Confidence 34555556667899999988876541 0112456674 4555555555 567776543
Q ss_pred ---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CC-HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 136 ---SNSTREAIHATEQGFAVGMHAALHINPYYGK---TS-LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 136 ---~~st~~ai~la~~a~~~Gadav~v~pP~y~~---~s-~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
+.+.++++++++.+++.|+|++-+....+.. +. +..-.++.+.|.+. .||+. .|---+++...++
T Consensus 222 ~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~------~Ggi~s~~~a~~~ 295 (338)
T 1z41_A 222 TDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGA------VGMITDGSMAEEI 295 (338)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEE------CSSCCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEE------ECCCCCHHHHHHH
Confidence 3568899999999999999999987654321 11 11123444555544 56653 2322368888877
Q ss_pred hcC--CCeEEE
Q 018253 207 AQS--PNLAGV 215 (359)
Q Consensus 207 a~~--pnivGi 215 (359)
.+. -..|++
T Consensus 296 l~~G~aD~V~i 306 (338)
T 1z41_A 296 LQNGRADLIFI 306 (338)
T ss_dssp HHTTSCSEEEE
T ss_pred HHcCCceEEee
Confidence 643 344444
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.18 Score=45.54 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHH--------------------------HHHHHHCCCCEEEEccCccCcCCCCHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDL--------------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDE 112 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~l--------------------------i~~li~~Gv~Gl~v~GstGE~~~LT~~E 112 (359)
-.|.=-.++=.+++||+||.+.++++ +++|++.|++-|+.-|.. .+-+..|
T Consensus 87 ~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG~~---~~~~a~~ 163 (224)
T 2bdq_A 87 ELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHGSS---NGEPIIE 163 (224)
T ss_dssp HTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECSCS---SCCCGGG
T ss_pred HcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCCCC---CCCcHHH
Confidence 34444444555567999999998877 456889999999955544 3345777
Q ss_pred HHHHHHHHHHhhCCCcEEEEecC--CCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 113 HIMLIGHTVNCFGASVKVIGNTG--SNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 113 r~~li~~~v~~~~grvpViagvg--~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
-...++..++.+++|+.|++|-| ..+..+- .++.|++.+-..
T Consensus 164 g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l------~~~tGv~e~H~s 207 (224)
T 2bdq_A 164 NIKHIKALVEYANNRIEIMVGGGVTAENYQYI------CQETGVKQAHGT 207 (224)
T ss_dssp GHHHHHHHHHHHTTSSEEEECSSCCTTTHHHH------HHHHTCCEEEET
T ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHH------HHhhCCCEEccc
Confidence 78888888888889999999654 4444432 234588877654
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.18 Score=46.78 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=84.9
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC--------
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-------- 137 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-------- 137 (359)
.=|||-.- . +.+...+.+.++++.|++++-+=|. +|..+.++.+++ .++||+.++|-+
T Consensus 83 aD~pfgsy-~-~~~~a~~~a~rl~kaGa~aVklEgg---------~e~~~~I~al~~---agipV~gHiGLtPq~v~~~g 148 (264)
T 1m3u_A 83 ADLPFMAY-A-TPEQAFENAATVMRAGANMVKIEGG---------EWLVETVQMLTE---RAVPVCGHLGLTPQSVNIFG 148 (264)
T ss_dssp EECCTTSS-S-SHHHHHHHHHHHHHTTCSEEECCCS---------GGGHHHHHHHHH---TTCCEEEEEESCGGGHHHHT
T ss_pred EECCCCCc-C-CHHHHHHHHHHHHHcCCCEEEECCc---------HHHHHHHHHHHH---CCCCeEeeecCCceeecccC
Confidence 66899533 3 7788888888999999999998776 355556665554 468988544311
Q ss_pred ----------CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-CCCCCCCCCHHHHH
Q 018253 138 ----------STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV-PSRTGQDIPPRVIH 204 (359)
Q Consensus 138 ----------st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~-P~~tg~~ls~e~l~ 204 (359)
..+++++.++.++++|||++++--. + . ++ .++|.++ .|++-.-. |...|+-|=...+.
T Consensus 149 gf~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE~v----p-~-~~---a~~it~~l~iP~igIGag~~~dgQvLV~~D~l 219 (264)
T 1m3u_A 149 GYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECV----P-V-EL---AKRITEALAIPVIGIGAGNVTDGQILVMHDAF 219 (264)
T ss_dssp SSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC----C-H-HH---HHHHHHHCSSCEEEESSCTTSSEEEECHHHHT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEecC----C-H-HH---HHHHHHhCCCCEEEeCCCCCCCcceeeHHhhc
Confidence 2478999999999999999988542 2 2 33 3467665 68877654 55667766666565
Q ss_pred HHh-c-CCCe
Q 018253 205 TMA-Q-SPNL 212 (359)
Q Consensus 205 ~La-~-~pni 212 (359)
-|. + .|.+
T Consensus 220 G~~~~~~pkf 229 (264)
T 1m3u_A 220 GITGGHIPKF 229 (264)
T ss_dssp TCSCSSCCTT
T ss_pred CCCCCCCCCc
Confidence 554 2 4665
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=1.1 Score=41.37 Aligned_cols=179 Identities=13% Similarity=0.002 Sum_probs=104.5
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc----------------CCCCHHHHHHHHHHHHHh
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG----------------QLMSWDEHIMLIGHTVNC 123 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~----------------~~LT~~Er~~li~~~v~~ 123 (359)
++.+.+.+||= .-|++...+.++.|.+. +|.|-++...++- .-+|.+.-.++++.+.+.
T Consensus 15 ~~~li~~i~~G----dP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~ 89 (271)
T 1ujp_A 15 RAALIPYLTAG----FPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL 89 (271)
T ss_dssp BCEEEEEEETT----SSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEecCC----CCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 34556666664 46678888899988888 9999987655421 115556666777777766
Q ss_pred hCCCcEEEEecCCCCHH--HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCH
Q 018253 124 FGASVKVIGNTGSNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPP 200 (359)
Q Consensus 124 ~~grvpViagvg~~st~--~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~ 200 (359)
. ++||++=...+... ..-++++.+.++|+|++++.. . +.+++.+|.+.+-+. .+.+..=.| ..+.
T Consensus 90 ~--~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~D--l---~~ee~~~~~~~~~~~gl~~i~liap-----~s~~ 157 (271)
T 1ujp_A 90 T--EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPD--L---PPDEDPGLVRLAQEIGLETVFLLAP-----TSTD 157 (271)
T ss_dssp C--CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTT--C---CGGGCHHHHHHHHHHTCEEECEECT-----TCCH
T ss_pred C--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecC--C---CHHHHHHHHHHHHHcCCceEEEeCC-----CCCH
Confidence 3 58988732222111 235778889999999887742 1 126677777766554 443332233 2456
Q ss_pred HHHHHHhc-CCCeEEEe---------ccCch--h----hHhhhhCCceEEEecC--C-chhhhhhhhcCCceeecccc
Q 018253 201 RVIHTMAQ-SPNLAGVK---------ECVGN--D----RVEHYTGNGIVVWSGN--D-DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 201 e~l~~La~-~pnivGiK---------~ss~d--~----~l~~~~~~~~~v~~G~--d-~~~~~~~l~~Ga~G~is~~a 259 (359)
+-++++++ ...++.+= ..... . ++++.. +..++.|. . ..-... + .|+||+|.|++
T Consensus 158 eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~-~-~~ADgVIVGSA 231 (271)
T 1ujp_A 158 ARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQ-A-AVADGVVVGSA 231 (271)
T ss_dssp HHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHH-H-TTSSEEEECHH
T ss_pred HHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHH-h-cCCCEEEEChH
Confidence 78888874 34444221 11110 1 223322 34455544 2 222333 6 89999998865
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.43 Score=44.67 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEecC---------CCCHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNTG---------SNSTREAIHATE 147 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagvg---------~~st~~ai~la~ 147 (359)
+-++..+++|++.+-+..++.|.+ ..|.+|-.+.++.+++.+. ...+|.+.+. ..+.+..+++++
T Consensus 84 ~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (298)
T 2cw6_A 84 KGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTK 163 (298)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHH
T ss_pred HhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHH
Confidence 347778889999999999999874 5677777777777666543 2345544332 347888999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
.+.++|+|.+.+.-- ....+++++.+.++.+.+..
T Consensus 164 ~~~~~Ga~~i~l~DT-~G~~~P~~~~~lv~~l~~~~ 198 (298)
T 2cw6_A 164 KFYSMGCYEISLGDT-IGVGTPGIMKDMLSAVMQEV 198 (298)
T ss_dssp HHHHTTCSEEEEEET-TSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCEEEecCC-CCCcCHHHHHHHHHHHHHhC
Confidence 999999998766533 34467788888888887653
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.27 Score=45.92 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=84.0
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-----
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN----- 137 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~----- 137 (359)
...=|||- ....+.+...+.+.++++ .|++|+-+=|. +|..+.++.+++. ++||+.++|-.
T Consensus 98 vvaD~pfg-sy~~s~~~a~~na~rl~~eaGa~aVklEdg---------~e~~~~I~al~~a---gIpV~gHiGLtPqsv~ 164 (281)
T 1oy0_A 98 VVADLPFG-SYEAGPTAALAAATRFLKDGGAHAVKLEGG---------ERVAEQIACLTAA---GIPVMAHIGFTPQSVN 164 (281)
T ss_dssp EEEECCTT-SSTTCHHHHHHHHHHHHHTTCCSEEEEEBS---------GGGHHHHHHHHHH---TCCEEEEEECCC----
T ss_pred EEEECCCC-cccCCHHHHHHHHHHHHHHhCCeEEEECCc---------HHHHHHHHHHHHC---CCCEEeeecCCcceec
Confidence 33778884 334566666565566666 99999998776 3556666666553 58887543311
Q ss_pred ------------CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-CCCCCCCCCHHH
Q 018253 138 ------------STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV-PSRTGQDIPPRV 202 (359)
Q Consensus 138 ------------st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~-P~~tg~~ls~e~ 202 (359)
..+++++.++.++++|||++++--. + . ++ .++|.++ .|++-.-. |...|+-|=...
T Consensus 165 ~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p-~-~~---a~~it~~l~iP~igIGaG~~~dgQvLV~~D 235 (281)
T 1oy0_A 165 TLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----P-A-EL---ATQITGKLTIPTVGIGAGPNCDGQVLVWQD 235 (281)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTCSEEEEESC----C-H-HH---HHHHHHHCSSCEEEESSCSCSSEEEECHHH
T ss_pred ccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC----C-H-HH---HHHHHHhCCCCEEEeCCCCCCCcceeeHhh
Confidence 3478999999999999999988542 2 2 33 3467665 68887654 566677766666
Q ss_pred HHHHh-c-CCCe
Q 018253 203 IHTMA-Q-SPNL 212 (359)
Q Consensus 203 l~~La-~-~pni 212 (359)
+.-|. + .|.+
T Consensus 236 ~lG~~~~~~pkf 247 (281)
T 1oy0_A 236 MAGFSGAKTARF 247 (281)
T ss_dssp HTTCSCSCCCTT
T ss_pred hcCCCCCCCCCc
Confidence 66665 3 4666
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=93.65 E-value=2 Score=37.24 Aligned_cols=156 Identities=12% Similarity=0.017 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.|.+...++++.+.+.|++.+-+.-.+. .-.+.++.+.+..+.+.++-+|+. .+.+ .++.|.+.|||
T Consensus 19 ~~~~~~~~~~~~~~~~G~~~iev~~~~~--------~~~~~i~~ir~~~~~~~~ig~~~v-~~~~----~~~~a~~~Gad 85 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVHLIEITFTVP--------DADTVIKELSFLKEKGAIIGAGTV-TSVE----QCRKAVESGAE 85 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEETTST--------THHHHHHHTHHHHHTTCEEEEESC-CSHH----HHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh--------hHHHHHHHHHHHCCCCcEEEeccc-CCHH----HHHHHHHcCCC
Confidence 3677899999999999999986654432 123456666665543444444332 3443 46777889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCch----hhHhhhhC--
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTG-- 229 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d----~~l~~~~~-- 229 (359)
.+ + .|.+. .+++++.++. ..|++. |+ .+++.+.+..+. .+-.+|....+ ..+.+...
T Consensus 86 ~i-v-~~~~~----~~~~~~~~~~--g~~vi~-------g~-~t~~e~~~a~~~-Gad~vk~~~~~~~g~~~~~~l~~~~ 148 (205)
T 1wa3_A 86 FI-V-SPHLD----EEISQFCKEK--GVFYMP-------GV-MTPTELVKAMKL-GHTILKLFPGEVVGPQFVKAMKGPF 148 (205)
T ss_dssp EE-E-CSSCC----HHHHHHHHHH--TCEEEC-------EE-CSHHHHHHHHHT-TCCEEEETTHHHHHHHHHHHHHTTC
T ss_pred EE-E-cCCCC----HHHHHHHHHc--CCcEEC-------Cc-CCHHHHHHHHHc-CCCEEEEcCccccCHHHHHHHHHhC
Confidence 99 4 45542 4455544431 257653 22 355555554432 23345543222 12222221
Q ss_pred CceEEEe--cCCchhhhhhhhcCCceeecccccc
Q 018253 230 NGIVVWS--GNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 230 ~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
+++.++. |-...-....+..|++|+..|.+.+
T Consensus 149 ~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~ 182 (205)
T 1wa3_A 149 PNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALV 182 (205)
T ss_dssp TTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHH
T ss_pred CCCcEEEcCCCCHHHHHHHHHCCCCEEEECcccc
Confidence 1444433 4433334456789999999886544
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.87 Score=42.11 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=86.1
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC-------cCCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE-------~~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
|=--.++|.+| ....++++ ++|++.+++..|.|- .-.+|.+|-..-.+.+++.+ .+.+|++-
T Consensus 16 g~~i~~~tayD-------~~sA~l~e---~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vvaD 84 (264)
T 1m3u_A 16 KKRFATITAYD-------YSFAKLFA---DEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLLAD 84 (264)
T ss_dssp TCCEEEEECCS-------HHHHHHHH---HHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEEEE
T ss_pred CCcEEEEeCcC-------HHHHHHHH---HcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEEEE
Confidence 33345788886 45556655 579999999656552 24678999888888877765 35677876
Q ss_pred cCCC---CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 134 TGSN---STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 134 vg~~---st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
.... |.+++++.++...+.||++|-+-- ++++.+-.+.+.++ .|++=+ ..|+|..+..+
T Consensus 85 ~pfgsy~~~~~a~~~a~rl~kaGa~aVklEg-------g~e~~~~I~al~~agipV~gH-------iGLtPq~v~~~ 147 (264)
T 1m3u_A 85 LPFMAYATPEQAFENAATVMRAGANMVKIEG-------GEWLVETVQMLTERAVPVCGH-------LGLTPQSVNIF 147 (264)
T ss_dssp CCTTSSSSHHHHHHHHHHHHHTTCSEEECCC-------SGGGHHHHHHHHHTTCCEEEE-------EESCGGGHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCEEEECC-------cHHHHHHHHHHHHCCCCeEee-------ecCCceeeccc
Confidence 5433 899999999999999999998763 35677888888887 688744 23555555544
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.21 Score=46.08 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.+.+++.+.|++.+...|+ .|-+..++. .++++.+++. .++|||+.-|=.+.+++ ..|.++|+|+|++-.
T Consensus 147 ~~akrl~~~G~~aVmPlg~pIGsG~Gi~~---~~lI~~I~e~--~~vPVI~eGGI~TPsDA----a~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 147 IIARQLAEIGCIAVMPLAGLIGSGLGICN---PYNLRIILEE--AKVPVLVDAGVGTASDA----AIAMELGCEAVLMNT 217 (265)
T ss_dssp HHHHHHHHSCCSEEEECSSSTTCCCCCSC---HHHHHHHHHH--CSSCBEEESCCCSHHHH----HHHHHHTCSEEEESH
T ss_pred HHHHHHHHhCCCEEEeCCccCCCCCCcCC---HHHHHHHHhc--CCCCEEEeCCCCCHHHH----HHHHHcCCCEEEECh
Confidence 3456777899999999776 555656654 4556676763 47999997665566654 456668999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 018253 162 PYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~Ia~ 181 (359)
-.....++..+.+.|..-.+
T Consensus 218 AI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 218 AIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHTSSSHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH
Confidence 66655667777777766543
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.31 Score=46.67 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
.+.|.+.+.++++.+.+.|++-|.+.+|+|-. ++++-.++++.+.+.+++++|+-++. +++.--++..+..|.++|
T Consensus 144 ~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~~pi~~H~-Hn~~G~avAn~laA~~aG 219 (345)
T 1nvm_A 144 HMIPAEKLAEQGKLMESYGATCIYMADSGGAM---SMNDIRDRMRAFKAVLKPETQVGMHA-HHNLSLGVANSIVAVEEG 219 (345)
T ss_dssp TSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC---CHHHHHHHHHHHHHHSCTTSEEEEEC-BCTTSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCcc---CHHHHHHHHHHHHHhcCCCceEEEEE-CCCccHHHHHHHHHHHcC
Confidence 36789999999999999999999999999985 69999999999999886568887765 567788899999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 154 MHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 154 adav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
|+.+=..---+. .++-++++..++.
T Consensus 220 a~~vd~tv~GlG~~aGN~~le~lv~~L~~ 248 (345)
T 1nvm_A 220 CDRVDASLAGMGAGAGNAPLEVFIAVAER 248 (345)
T ss_dssp CCEEEEBGGGCSSTTCBCBHHHHHHHHHH
T ss_pred CCEEEecchhccCCccCcCHHHHHHHHHh
Confidence 998866533232 2455666666654
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.42 E-value=4.8 Score=37.17 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=100.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----c------------CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----G------------QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~------------~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
--|.-|++...++++.|.+.|+|.|=++=-.++ + .-+|.+.-.++++.+.+. ..++|+++=..
T Consensus 27 ~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~-~~~~Pivlm~Y 105 (271)
T 3nav_A 27 TIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRAR-NPETPIGLLMY 105 (271)
T ss_dssp ETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTSCEEEEEC
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEEEEec
Confidence 356788999999999999999998776532211 1 114555556666666654 13689876444
Q ss_pred CCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCC
Q 018253 136 SNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPN 211 (359)
Q Consensus 136 ~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pn 211 (359)
.+.... .-++++.++++|+|++++. -. ..++..+|.+...+. +..+..=.|. -+.+.++++++ .+.
T Consensus 106 ~n~v~~~g~~~f~~~~~~aGvdGvIip--Dl---p~ee~~~~~~~~~~~gl~~I~lvap~-----t~~eri~~i~~~~~g 175 (271)
T 3nav_A 106 ANLVYARGIDDFYQRCQKAGVDSVLIA--DV---PTNESQPFVAAAEKFGIQPIFIAPPT-----ASDETLRAVAQLGKG 175 (271)
T ss_dssp HHHHHHTCHHHHHHHHHHHTCCEEEET--TS---CGGGCHHHHHHHHHTTCEEEEEECTT-----CCHHHHHHHHHHCCS
T ss_pred CcHHHHHhHHHHHHHHHHCCCCEEEEC--CC---CHHHHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHHHCCC
Confidence 333222 3678999999999998883 22 225555555544444 3333222332 34678888874 445
Q ss_pred eEEE---------eccCch--h----hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeecccc
Q 018253 212 LAGV---------KECVGN--D----RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 259 (359)
Q Consensus 212 ivGi---------K~ss~d--~----~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~a 259 (359)
++++ +..... . ++++.. +.-+..|..- .-....+..|+||+|.|++
T Consensus 176 fiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSA 239 (271)
T 3nav_A 176 YTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSA 239 (271)
T ss_dssp CEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred eEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 5543 211111 1 223333 3445555431 1222246789999999865
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.23 Score=44.72 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+.+.|++++++.+.+-++..... -.++++.+.+.+ ++|||++=|-.+.+++.++. +.|+|++++..
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~--~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~----~~Gadgv~vgs 226 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGY--DLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAF----QAGAEAALAAS 226 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCC--CHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHH----HTTCSEEEESH
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCC--CHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHH----HCCCHHHHHHH
Confidence 33455566789999998864433222221 144555555554 68999976655566665543 47999999998
Q ss_pred CCCCCC-CHHHHHHHHH
Q 018253 162 PYYGKT-SLEGLISHFD 177 (359)
Q Consensus 162 P~y~~~-s~~~l~~yf~ 177 (359)
-.+..+ +.+++.++.+
T Consensus 227 al~~~~~~~~~~~~~l~ 243 (252)
T 1ka9_F 227 VFHFGEIPIPKLKRYLA 243 (252)
T ss_dssp HHHTTSSCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 777664 7788777654
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=1.3 Score=45.93 Aligned_cols=130 Identities=11% Similarity=0.074 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccC----c-----------CCCCHHHH----HHHHHHHHHhhCCCcEEEEec------
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGE----G-----------QLMSWDEH----IMLIGHTVNCFGASVKVIGNT------ 134 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE----~-----------~~LT~~Er----~~li~~~v~~~~grvpViagv------ 134 (359)
.+.+-.....++|.|||=+.+..|- | +-=|.+.| .++++.+++.++.+.||.+=+
T Consensus 142 ~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~ 221 (671)
T 1ps9_A 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccC
Confidence 4444455556799999999877641 1 12245667 556666666777778886622
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCEEEEcC----CCC---CCCCH-HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH
Q 018253 135 -GSNSTREAIHATEQGFAVGMHAALHIN----PYY---GKTSL-EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 135 -g~~st~~ai~la~~a~~~Gadav~v~p----P~y---~~~s~-~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l 203 (359)
++.+.++++++++.+++.|+|++-+.. |.+ ..... .....+.+.|.+. .||+. .|--.+++..
T Consensus 222 ~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~------~Ggi~~~~~a 295 (671)
T 1ps9_A 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVT------TNRINDPQVA 295 (671)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEE------CSSCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEE------eCCCCCHHHH
Confidence 245789999999999999999997741 111 11111 1224566667665 57764 2333478888
Q ss_pred HHHhcC--CCeEEE
Q 018253 204 HTMAQS--PNLAGV 215 (359)
Q Consensus 204 ~~La~~--pnivGi 215 (359)
.++.+. -..|++
T Consensus 296 ~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 296 DDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHcCCCCEEEe
Confidence 887643 344443
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.39 Score=46.34 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHH-------HHCCCCEEEEccCcc----------------CcCCCCHHHHHHHHHHH----HHhhCCC
Q 018253 75 RFDLEAYDDLVNMQ-------IVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIGHT----VNCFGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~l-------i~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~li~~~----v~~~~gr 127 (359)
.++.+.++++++.. .++|.|||=+.+..| |+- =|.+.|.+++..+ ++.++.+
T Consensus 147 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yG-GslenR~r~~~eiv~aVr~avg~d 225 (363)
T 3l5l_A 147 EMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYG-GSFDNRSRFLLETLAAVREVWPEN 225 (363)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTS-SSHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccC-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence 36666666666554 468999999988643 221 2567776554444 4445556
Q ss_pred cEEEEecCC--------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC----C-CHHHHHHHHHHHHhc--CCeEEEeCCC
Q 018253 128 VKVIGNTGS--------NSTREAIHATEQGFAVGMHAALHINPYYGK----T-SLEGLISHFDSVLSM--GPTIIYNVPS 192 (359)
Q Consensus 128 vpViagvg~--------~st~~ai~la~~a~~~Gadav~v~pP~y~~----~-s~~~l~~yf~~Ia~a--~PiiiYn~P~ 192 (359)
.||.+=++. .+.++++++++..++.|+|.+-+....+.. + .+..-..+.+.|.+. .||+.
T Consensus 226 ~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~----- 300 (363)
T 3l5l_A 226 LPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTS----- 300 (363)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEE-----
T ss_pred ceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEE-----
Confidence 677764432 567899999999999999999887543221 0 111113344444443 57653
Q ss_pred CCCCCCCHHHHHHHhc
Q 018253 193 RTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 193 ~tg~~ls~e~l~~La~ 208 (359)
.|---+++...++.+
T Consensus 301 -~GgI~s~e~a~~~l~ 315 (363)
T 3l5l_A 301 -AWGFGTPQLAEAALQ 315 (363)
T ss_dssp -CSSTTSHHHHHHHHH
T ss_pred -eCCCCCHHHHHHHHH
Confidence 232235777776653
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.22 E-value=1.2 Score=41.41 Aligned_cols=120 Identities=10% Similarity=0.104 Sum_probs=84.6
Q ss_pred cCCcccc---cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc-------CcCCCCHHHHHHHHHHH
Q 018253 51 RTSAEDI---KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG-------EGQLMSWDEHIMLIGHT 120 (359)
Q Consensus 51 ~~~~~~~---~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG-------E~~~LT~~Er~~li~~~ 120 (359)
++++.++ +-.|=--.++|.+| ....++++ ++|++.+++..|.| -.-.+|.+|-..-++.+
T Consensus 15 ~~t~~~lr~~~~~g~~i~m~tayD-------a~sA~l~e---~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV 84 (275)
T 3vav_A 15 AVTVPKLQAMREAGEKIAMLTCYD-------ASFAALLD---RANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACV 84 (275)
T ss_dssp CCCHHHHHHHHHHTCCEEEEECCS-------HHHHHHHH---HTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHCCCcEEEEeCcC-------HHHHHHHH---HcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHH
Confidence 3444443 23344456788886 34455544 68999998876765 22368999988888887
Q ss_pred HHhhCCCcEEEEecCC---CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEE
Q 018253 121 VNCFGASVKVIGNTGS---NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIY 188 (359)
Q Consensus 121 v~~~~grvpViagvg~---~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiY 188 (359)
++.+ .+.||++-.-. .+.+++++.++...+.||++|-+-- +.+..+..+.|.++ .|++-+
T Consensus 85 ~r~~-~~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEd-------g~~~~~~i~~l~~~GIpv~gH 148 (275)
T 3vav_A 85 ARAQ-PRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEG-------GEWLAETVRFLVERAVPVCAH 148 (275)
T ss_dssp HHTC-CSSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEEC-------CGGGHHHHHHHHHTTCCEEEE
T ss_pred HhcC-CCCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECC-------chhHHHHHHHHHHCCCCEEEe
Confidence 7754 46899996532 5889999999999889999998863 23456667777777 688864
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.13 Score=49.76 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+.+.|+++|.+.++.|-...-. .-..+.+..+.+.+.+++|||+.=|=.+..++.+... +|||+|++-.|
T Consensus 237 e~a~~a~~~Gad~I~vs~~ggr~~~~~-~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~----~GAdaV~iGr~ 311 (370)
T 1gox_A 237 EDARLAVQHGAAGIIVSNHGARQLDYV-PATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA----LGAAGVFIGRP 311 (370)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSSTTC-CCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHH----HTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEECCCCCccCCCc-ccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHH----cCCCEEeecHH
Confidence 345778899999999976555311111 1234555666677777899997444445666665543 79999999999
Q ss_pred CCCCC---CHHHHHHHHHHHHh
Q 018253 163 YYGKT---SLEGLISHFDSVLS 181 (359)
Q Consensus 163 ~y~~~---s~~~l~~yf~~Ia~ 181 (359)
+++.. .++++.++++.+.+
T Consensus 312 ~l~~~~~~G~~gv~~~~~~l~~ 333 (370)
T 1gox_A 312 VVFSLAAEGEAGVKKVLQMMRD 333 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHH
Confidence 87642 34555566555544
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.26 Score=46.17 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHH------------------------HHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLV------------------------NMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li------------------------~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
-.|.=-.++=-+++||+||.+.+++++ +++++.|++-|+.-|.. -+..|..
T Consensus 122 ~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~~-----~~a~~Gl 196 (287)
T 3iwp_A 122 LYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCD-----SSALEGL 196 (287)
T ss_dssp HTTCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTS-----SSTTTTH
T ss_pred HcCCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCC-----CChHHhH
Confidence 344444445555679999999988875 55677799999987752 2235788
Q ss_pred HHHHHHHHhhCCCcEEEEecC--CCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 115 MLIGHTVNCFGASVKVIGNTG--SNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg--~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++..++.++++++|++|-| ..+..+.+ +..|++.+-..
T Consensus 197 ~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~------~~tG~~~~H~S 238 (287)
T 3iwp_A 197 PLIKRLIEQAKGRIVVMPGGGITDRNLQRIL------EGSGATEFHCS 238 (287)
T ss_dssp HHHHHHHHHHTTSSEEEECTTCCTTTHHHHH------HHHCCSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEECCCcCHHHHHHHH------HhhCCCEEeEC
Confidence 888888888899999999744 43443332 23688877554
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.71 Score=43.48 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHH--HhhCCCcEEEEecCCCC-H-----HH-HH---HH
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV--NCFGASVKVIGNTGSNS-T-----RE-AI---HA 145 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v--~~~~grvpViagvg~~s-t-----~~-ai---~l 145 (359)
++.+++++...++.|++||++-...|+ ..+. .....++++|++..+.+ . .+ .+ .-
T Consensus 47 l~~~k~lv~~~~~~~~~avl~~~g~~~-------------~a~~~~~~~~~~~glil~l~~~~~l~~~~~~~~l~~~~~~ 113 (304)
T 1to3_A 47 LTDFKVNAAKILSPYASAVLLDQQFCY-------------RQAVEQNAVAKSCAMIVAADDFIPGNGIPVDNVVLDKKIN 113 (304)
T ss_dssp HHHHHHHHHHHHGGGCSEEEECTTTTH-------------HHHHHTTCSCTTSEEEEECEEEEEETTEEEEEEEECSSCC
T ss_pred hhhHHHHHHHHHhcCCCEEEeCHHHHH-------------HHhhcccccCCCCcEEEEECCCCCCCCCccchhhccCchh
Confidence 578999999999999999998777776 1111 12455689988874311 1 11 33 56
Q ss_pred HHHHHhCCCCEEEEcCCCCCCC-CHHHHHHHHHHHHhc-----CCeEEEeCCC--CCCCCCCH-HHHHHH---h-cC-CC
Q 018253 146 TEQGFAVGMHAALHINPYYGKT-SLEGLISHFDSVLSM-----GPTIIYNVPS--RTGQDIPP-RVIHTM---A-QS-PN 211 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~y~~~-s~~~l~~yf~~Ia~a-----~PiiiYn~P~--~tg~~ls~-e~l~~L---a-~~-pn 211 (359)
+++|.++|||+|-++- ||.+. ++.+.++..+++.+. +|+++-=+|. ..+.+-++ +.+.+- + +. ..
T Consensus 114 ve~a~~~GAdaV~vlv-~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD 192 (304)
T 1to3_A 114 AQAVKRDGAKALKLLV-LWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 192 (304)
T ss_dssp HHHHHHTTCCEEEEEE-EECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHcCCCEEEEEE-EcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCC
Confidence 7788889999997653 23222 356677777777653 5876554432 22333455 555542 2 33 35
Q ss_pred eEEEeccC---ch-h---hHhhh----hCCceEEEecCCch-----hhhhhhhcCCceeeccc
Q 018253 212 LAGVKECV---GN-D---RVEHY----TGNGIVVWSGNDDQ-----CHDARWNHGATGVISVT 258 (359)
Q Consensus 212 ivGiK~ss---~d-~---~l~~~----~~~~~~v~~G~d~~-----~~~~~l~~Ga~G~is~~ 258 (359)
+++++... ++ . ++.+. +.-.+.+++|.... .+...+..|++|++.|-
T Consensus 193 ~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGR 255 (304)
T 1to3_A 193 LYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGR 255 (304)
T ss_dssp EEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESH
T ss_pred EEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 77777641 12 1 23232 33343455554322 13345788999999873
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.29 Score=45.86 Aligned_cols=84 Identities=7% Similarity=-0.033 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHCCCC---EEEEccCc----cC-cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAE---GMIVGGTT----GE-GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~---Gl~v~Gst----GE-~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la 146 (359)
-+.+.+.+.++.+.+.|++ +|-++-++ |. .+.-+.+...++++.+.+.+ ++||++-++. .+.++..+++
T Consensus 103 ~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~--~~Pv~vK~~~~~~~~~~~~~a 180 (314)
T 2e6f_A 103 LSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY--GLPFGVKMPPYFDIAHFDTAA 180 (314)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH--CSCEEEEECCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCHHHHHHHH
Confidence 5788999999999999999 88887641 11 11226777788998888877 5799987654 3677888899
Q ss_pred HHHHhCC-CCEEEEcC
Q 018253 147 EQGFAVG-MHAALHIN 161 (359)
Q Consensus 147 ~~a~~~G-adav~v~p 161 (359)
+.++++| +|++.+..
T Consensus 181 ~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 181 AVLNEFPLVKFVTCVN 196 (314)
T ss_dssp HHHHTCTTEEEEEECC
T ss_pred HHHHhcCCceEEEEeC
Confidence 9999999 99998875
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.7 Score=43.25 Aligned_cols=103 Identities=14% Similarity=-0.031 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---CCCCHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGF 150 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g~~st~~ai~la~~a~ 150 (359)
.+++.++.+.++|++-+-+..+++|.+ ..|.+|-.+.++.+++.+.. ...|.++. +..+.+..++.++.+.
T Consensus 81 di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~ 160 (293)
T 3ewb_X 81 DIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAI 160 (293)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 345555555567777777777777765 56777766666666654322 23344432 2245566666777777
Q ss_pred hCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 151 AVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
++|+|.+.+. =.....+++++.+.++.+.+..
T Consensus 161 ~~G~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 192 (293)
T 3ewb_X 161 DAGATVINIP-DTVGYTNPTEFGQLFQDLRREI 192 (293)
T ss_dssp HTTCCEEEEE-CSSSCCCHHHHHHHHHHHHHHC
T ss_pred HcCCCEEEec-CCCCCCCHHHHHHHHHHHHHhc
Confidence 7777654443 2233345666666666665543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=1 Score=45.31 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....++.+++.|++++.+..+.|.- +.-.++++.+.+.+ +++||++| +. +.+.++.+.++|+|++.+
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~-----~~~~~~i~~i~~~~-~~~pvi~~~v~------t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNS-----VYQIAMVHYIKQKY-PHLQVIGGNVV------TAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCS-----HHHHHHHHHHHHHC-TTCEEEEEEEC------SHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcc-----hhHHHHHHHHHHhC-CCCceEecccc------hHHHHHHHHHcCCCEEEE
Confidence 4556777889999999997776632 33457788888877 46899984 52 245588888999999988
Q ss_pred cC-CCC---------CCCCHHHHHHHHHHHHhc--CCeEE
Q 018253 160 IN-PYY---------GKTSLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 160 ~p-P~y---------~~~s~~~l~~yf~~Ia~a--~Piii 187 (359)
.. |-. ....+..-.....++++. .||+.
T Consensus 324 g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia 363 (514)
T 1jcn_A 324 GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIA 363 (514)
T ss_dssp CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEE
Confidence 43 211 111234445566666664 56653
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.87 E-value=3.8 Score=39.40 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=101.1
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAI 143 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai 143 (359)
|.+.-|++. .+ + .++...+...|--|++. ..+|.+|..+.++.+.+. ++.|+.++++... .
T Consensus 47 Pii~apM~~-vt-~----~~lA~avA~~GGlgii~-------~~~s~e~~~~~I~~vk~~--~~~pvga~ig~~~----~ 107 (361)
T 3khj_A 47 PLISSAMDT-VT-E----HLMAVGMARLGGIGIIH-------KNMDMESQVNEVLKVKNS--GGLRVGAAIGVNE----I 107 (361)
T ss_dssp SEEECSSTT-TC-S----HHHHHHHHHTTCEEEEC-------SSSCHHHHHHHHHHHHHT--TCCCCEEEECTTC----H
T ss_pred CEEeecCCC-CC-c----HHHHHHHHHcCCCeEEe-------cCCCHHHHHHHHHHHHhc--cCceEEEEeCCCH----H
Confidence 445566652 21 1 25666566666555552 268999999998887764 4678888887655 7
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccC--
Q 018253 144 HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV-- 219 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss-- 219 (359)
+.++.+.++|+|.+.+-.+.- ..+.+.+..+.+.+. .|+++-|. .+++...++.+. .+-+||.+.
T Consensus 108 e~a~~l~eaGad~I~ld~a~G---~~~~~~~~i~~i~~~~~~~Vivg~v-------~t~e~A~~l~~a-GaD~I~VG~~~ 176 (361)
T 3khj_A 108 ERAKLLVEAGVDVIVLDSAHG---HSLNIIRTLKEIKSKMNIDVIVGNV-------VTEEATKELIEN-GADGIKVGIGP 176 (361)
T ss_dssp HHHHHHHHTTCSEEEECCSCC---SBHHHHHHHHHHHHHCCCEEEEEEE-------CSHHHHHHHHHT-TCSEEEECSSC
T ss_pred HHHHHHHHcCcCeEEEeCCCC---CcHHHHHHHHHHHHhcCCcEEEccC-------CCHHHHHHHHHc-CcCEEEEecCC
Confidence 788888999999887754431 235566666666664 67877543 567888887753 222333320
Q ss_pred --------------chh----hHhhhh-CCceEEEe--cC-CchhhhhhhhcCCceeeccccccc
Q 018253 220 --------------GND----RVEHYT-GNGIVVWS--GN-DDQCHDARWNHGATGVISVTSNLV 262 (359)
Q Consensus 220 --------------~d~----~l~~~~-~~~~~v~~--G~-d~~~~~~~l~~Ga~G~is~~an~~ 262 (359)
.+. .+.+.. ..++.|+. |- +..-+..++.+|++|++.+.+.+.
T Consensus 177 Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 177 GSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 241 (361)
T ss_dssp CTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTT
T ss_pred CcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhc
Confidence 111 111111 11344554 33 222223458899999998877654
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.2 Score=48.54 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHHCCCCEEEEccCccCcC-----------------CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQ-----------------LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~-----------------~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
.+..+.+.|+++|.+.|..|-.+ .++..+-. . . ++.+.+++|||+.=|=.+-.++++..
T Consensus 222 ~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L--~-~-v~~~~~~ipvia~GGI~~g~Dv~KaL 297 (365)
T 3sr7_A 222 TIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVL--L-N-AQPLMDKVEILASGGIRHPLDIIKAL 297 (365)
T ss_dssp HHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHH--H-H-HGGGTTTSEEEECSSCCSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHH--H-H-HHHhcCCCeEEEeCCCCCHHHHHHHH
Confidence 45667788999999988866532 23322222 2 2 23455689999854444566655543
Q ss_pred HHHHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018253 147 EQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+|||+|++..|+.+. ..++++.++++.+.+.
T Consensus 298 ----alGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~e 332 (365)
T 3sr7_A 298 ----VLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKED 332 (365)
T ss_dssp ----HHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ----HcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3899999999998753 3456777777776653
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.57 Score=44.16 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=69.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecC-------C-CCH-HHHHHHHHHHHhC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTG-------S-NST-REAIHATEQGFAV 152 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg-------~-~st-~~ai~la~~a~~~ 152 (359)
.-++..++.|++++-+++..| ...+..|+.+.++.+++.+ .-.+|+++-+. . .+. +-..+.++.+.++
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~--~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~l 189 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWR--SDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDS 189 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEEC--TTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHcCCCEEEEEEEcC--CCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHc
Confidence 446777889999998777666 3344577777777777764 44688877543 1 223 4445559999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GP 184 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~P 184 (359)
|||.+=+-+|.+...+.+++.+..+..... .|
T Consensus 190 GaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P 223 (304)
T 1to3_A 190 GADLYKVEMPLYGKGARSDLLTASQRLNGHINMP 223 (304)
T ss_dssp SCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSC
T ss_pred CCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCC
Confidence 999887877765334677777777776553 56
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.32 Score=44.18 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+.+.|++.|++.+.+-.+.....+ .++++.+.+.+ ++|||++-|-.+.+++.++.+ .|||++++..
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~--~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~----~Gadgv~vgs 230 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSGYD--TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFL----AGADAALAAS 230 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSCCC--HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHH----HTCSEEEEST
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCC--HHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHH----cCCHHHHccH
Confidence 344555667899999986644333221111 34555555544 689999877666777777653 6999999998
Q ss_pred CCCCCC-CHHHHHHHH
Q 018253 162 PYYGKT-SLEGLISHF 176 (359)
Q Consensus 162 P~y~~~-s~~~l~~yf 176 (359)
-.|..+ +.+++.+|+
T Consensus 231 al~~~~~~~~~~~~~l 246 (266)
T 2w6r_A 231 VFHFREIDMRELKEYL 246 (266)
T ss_dssp TTC-------------
T ss_pred HHHcCCCCHHHHHHHH
Confidence 888654 555555554
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.78 Score=43.81 Aligned_cols=124 Identities=8% Similarity=-0.039 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHH-------HHHCCCCEEEEccCc----------------cCcCCCCHHHHHH----HHHHHHHhhCCCc
Q 018253 76 FDLEAYDDLVNM-------QIVNGAEGMIVGGTT----------------GEGQLMSWDEHIM----LIGHTVNCFGASV 128 (359)
Q Consensus 76 ID~~~l~~li~~-------li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~----li~~~v~~~~grv 128 (359)
++.+.++++++. ..++|.|||=+.+.. .|+- =|.+.|.+ +++.+++.+ +.
T Consensus 134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yG-GslenR~r~~~eiv~avr~~v--~~ 210 (340)
T 3gr7_A 134 MTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYG-GSPENRYRFLGEVIDAVREVW--DG 210 (340)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTS-SSHHHHHHHHHHHHHHHHHHC--CS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCccc-CCHHHHHHHHHHHHHHHHHhc--CC
Confidence 555555555544 456899999998874 2322 36777754 445555555 56
Q ss_pred EEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Q 018253 129 KVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGKT----SLEGLISHFDSVLSM--GPTIIYNVPSRTG 195 (359)
Q Consensus 129 pViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~----s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg 195 (359)
||.+=++ +.+.++++++++..+++|+|.+-+....+... .+..-..+.+.|.+. +||+.= |
T Consensus 211 pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~------G 284 (340)
T 3gr7_A 211 PLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAV------G 284 (340)
T ss_dssp CEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEE------S
T ss_pred ceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEee------C
Confidence 7766444 24688999999999999999998875432210 111123444555554 576542 3
Q ss_pred CCCCHHHHHHHhc
Q 018253 196 QDIPPRVIHTMAQ 208 (359)
Q Consensus 196 ~~ls~e~l~~La~ 208 (359)
---+++..+++.+
T Consensus 285 gI~s~e~a~~~L~ 297 (340)
T 3gr7_A 285 LITSGWQAEEILQ 297 (340)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 2236777777664
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.66 Score=42.35 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~G 153 (359)
.+.+......+...+.|++.+.+.- .... +.++.+++.+ ++||++ |++..+.+++++.++.+.+.|
T Consensus 163 ~~~~~~~~~a~~a~~~Gad~i~~~~------~~~~----~~l~~i~~~~--~ipvva~GGi~~~~~~~~~~~~~~~~~~G 230 (273)
T 2qjg_A 163 RDPELVAHAARLGAELGADIVKTSY------TGDI----DSFRDVVKGC--PAPVVVAGGPKTNTDEEFLQMIKDAMEAG 230 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECC------CSSH----HHHHHHHHHC--SSCEEEECCSCCSSHHHHHHHHHHHHHHT
T ss_pred CCHhHHHHHHHHHHHcCCCEEEECC------CCCH----HHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 4556666666888899999776652 2333 3444555544 578876 455445899999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
++++++..-.+..++..+..+.|.++.+
T Consensus 231 a~gv~vg~~i~~~~~~~~~~~~l~~~~~ 258 (273)
T 2qjg_A 231 AAGVAVGRNIFQHDDVVGITRAVCKIVH 258 (273)
T ss_dssp CSEEECCHHHHTSSSHHHHHHHHHHHHH
T ss_pred CcEEEeeHHhhCCCCHHHHHHHHHHHHh
Confidence 9999998877777777766666665554
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.71 E-value=4.2 Score=36.42 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=98.5
Q ss_pred CceEEeeecCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC---
Q 018253 60 LRLITAIKTPYLPDGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG--- 135 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~I-D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg--- 135 (359)
.|+++..-.+ +++-+ +.+-..++...+.+.|+.|+-+.+ .+-++.+.+.+ ++||+.-.-
T Consensus 18 ~~livscq~~--~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v--~~Pvig~~k~~~ 80 (229)
T 3q58_A 18 GGLIVSCQPV--PGSPMDKPEIVAAMAQAAASAGAVAVRIEG-------------IENLRTVRPHL--SVPIIGIIKRDL 80 (229)
T ss_dssp CCEEEECCCC--TTSTTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHGGGC--CSCEEEECBCCC
T ss_pred CCEEEEEeCC--CCCCCCCcchHHHHHHHHHHCCCcEEEECC-------------HHHHHHHHHhc--CCCEEEEEeecC
Confidence 4566654332 22222 345688899999999999998731 23455555555 579873221
Q ss_pred -C--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcC-
Q 018253 136 -S--NSTREAIHATEQGFAVGMHAALHINPYYGKT-SLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQS- 209 (359)
Q Consensus 136 -~--~st~~ai~la~~a~~~Gadav~v~pP~y~~~-s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~- 209 (359)
. .-.....+.++.+.++|||.+++....-..+ ..++++++++ +. .+++. +. -+.+...+..+.
T Consensus 81 ~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~---~~g~~v~~-~v-------~t~eea~~a~~~G 149 (229)
T 3q58_A 81 TGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIR---LHGLLAMA-DC-------STVNEGISCHQKG 149 (229)
T ss_dssp SSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHH---HTTCEEEE-EC-------SSHHHHHHHHHTT
T ss_pred CCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHH---HCCCEEEE-ec-------CCHHHHHHHHhCC
Confidence 0 1111234556677889999998876543223 3344444444 33 34432 32 246666666543
Q ss_pred CCeEEEecc---------Cchhh-HhhhhCCceEEEe--cCC-chhhhhhhhcCCceeecccccccHHHHHH
Q 018253 210 PNLAGVKEC---------VGNDR-VEHYTGNGIVVWS--GND-DQCHDARWNHGATGVISVTSNLVPGMMRE 268 (359)
Q Consensus 210 pnivGiK~s---------s~d~~-l~~~~~~~~~v~~--G~d-~~~~~~~l~~Ga~G~is~~an~~P~l~~~ 268 (359)
..++|+... ..+.. +.+....++.++. |-. ..-+...+.+|++|++.|.+-.-|....+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p~~~~~ 221 (229)
T 3q58_A 150 IEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQ 221 (229)
T ss_dssp CSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCHHHHHH
T ss_pred CCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcChHHHHH
Confidence 456664321 12222 2232222444444 331 12223457789999999987777766544
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.86 Score=43.97 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcc----------------CcCCCCHHHHHHH----HHHHHHhhCCCcEEEEecC----
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIML----IGHTVNCFGASVKVIGNTG---- 135 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~l----i~~~v~~~~grvpViagvg---- 135 (359)
.+.+-.+...++|.|||=+.+..| |+ -=|.+.|.++ ++.+++.++.+ ||.+=++
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~y-GGslenr~r~~~eiv~avr~~vg~~-pv~vris~~~~ 239 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEY-GGSLENRLRFLDEVVAALVDAIGAE-RVGVRLAPLTT 239 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTT-SSSHHHHTHHHHHHHHHHHHHHCGG-GEEEEECSSCC
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCccc-CcchhhhHHHHHHHHHHHHHHcCCC-cEEEEEccccc
Confidence 344444455679999999987653 21 1245666544 55555666555 7777333
Q ss_pred ------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018253 136 ------SNSTREAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 136 ------~~st~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
..+.++++++++.+++.|+|++-+..+.|.. +. +. ++.+.|.+. .||+.= .| ++++...+
T Consensus 240 ~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~---~~~~~i~~~~~iPvi~~-----Gg--i~~~~a~~ 309 (365)
T 2gou_A 240 LNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPV---SFKRALREAYQGVLIYA-----GR--YNAEKAEQ 309 (365)
T ss_dssp TTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCH---HHHHHHHHHCCSEEEEE-----SS--CCHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccH---HHHHHHHHHCCCcEEEe-----CC--CCHHHHHH
Confidence 2367889999999999999999998875421 11 11 344555554 465532 23 38888888
Q ss_pred HhcC
Q 018253 206 MAQS 209 (359)
Q Consensus 206 La~~ 209 (359)
+.+.
T Consensus 310 ~l~~ 313 (365)
T 2gou_A 310 AIND 313 (365)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7653
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.16 Score=49.33 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHH--HH----------------------HHHHHHHHhhCCCcEEEEecCCCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--HI----------------------MLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~E--r~----------------------~li~~~v~~~~grvpViagvg~~s 138 (359)
..++.+.+.|+++|.+.|+.|- +.+.=| |. ..+..+.+.++ ++|||+.=|=.+
T Consensus 202 ~~A~~l~~aGad~I~V~g~GGt--~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~ 278 (368)
T 3vkj_A 202 ETAKLLYSYGIKNFDTSGQGGT--NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRS 278 (368)
T ss_dssp HHHHHHHHTTCCEEECCCBTSB--CHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCS
T ss_pred HHHHHHHhCCCCEEEEeCCCCC--cccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEECCCCC
Confidence 4577788999999999888662 111111 10 12233444443 699998555455
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a 182 (359)
..++++.. .+|||+|++..|+.+. ..++++.++++.+.+.
T Consensus 279 ~~d~~kal----~lGA~~v~ig~~~l~~~~~G~~~v~~~l~~l~~e 320 (368)
T 3vkj_A 279 GLDAAKAI----ALGADIAGMALPVLKSAIEGKESLEQFFRKIIFE 320 (368)
T ss_dssp HHHHHHHH----HHTCSEEEECHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HcCCCEEEEcHHHHHHHhcChHHHHHHHHHHHHH
Confidence 66665443 3799999999997742 2457777777777654
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=92.55 E-value=3.8 Score=37.47 Aligned_cols=177 Identities=12% Similarity=0.091 Sum_probs=99.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc----CcCCCCHHHH---------HHHHHHHHHhhCCCcEEEEecC
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG----EGQLMSWDEH---------IMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG----E~~~LT~~Er---------~~li~~~v~~~~grvpViagvg 135 (359)
||-.-|.-|.+...++++.|.++|+|-|=++=-.+ +++..-..-. ..+++.+.+ +..++|++.=..
T Consensus 18 ~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~-~r~~~Pivlm~Y 96 (252)
T 3tha_A 18 AYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLAR-IKTKKALVFMVY 96 (252)
T ss_dssp EEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHH-CCCSSEEEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHH-HhcCCCEEEEec
Confidence 44456789999999999999999999765543222 2221111111 334444433 334589988666
Q ss_pred CCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCC
Q 018253 136 SNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPN 211 (359)
Q Consensus 136 ~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pn 211 (359)
.|.... .=++++.++++|+|++++.- . ..|+..+|.+...+. +..+..=.| .-+.+.++++++ .+.
T Consensus 97 ~N~i~~~G~e~F~~~~~~aGvdG~IipD--L---P~eE~~~~~~~~~~~Gl~~I~lvaP-----~t~~eRi~~ia~~a~g 166 (252)
T 3tha_A 97 YNLIFSYGLEKFVKKAKSLGICALIVPE--L---SFEESDDLIKECERYNIALITLVSV-----TTPKERVKKLVKHAKG 166 (252)
T ss_dssp HHHHHHHCHHHHHHHHHHTTEEEEECTT--C---CGGGCHHHHHHHHHTTCEECEEEET-----TSCHHHHHHHHTTCCS
T ss_pred cCHHHHhhHHHHHHHHHHcCCCEEEeCC--C---CHHHHHHHHHHHHHcCCeEEEEeCC-----CCcHHHHHHHHHhCCC
Confidence 654433 45689999999999998853 2 224444444433333 332222233 234788999986 456
Q ss_pred eEEEecc---Cch-----h-------hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeecccc
Q 018253 212 LAGVKEC---VGN-----D-------RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 259 (359)
Q Consensus 212 ivGiK~s---s~d-----~-------~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~a 259 (359)
++.+=-. +|. . ++++.. +..+..|..= .-... +..++||+|.|++
T Consensus 167 FiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~-~~~~ADGVIVGSA 229 (252)
T 3tha_A 167 FIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKR-MRKVADGVIVGTS 229 (252)
T ss_dssp CEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHH-HTTTSSEEEECHH
T ss_pred eEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHH-HHhcCCEEEECHH
Confidence 6655321 121 1 122222 3445555431 12223 4568999998865
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.5 Score=44.86 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=57.9
Q ss_pred HHHHHHCCCCEEEEccCcc---------C-----------cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 85 VNMQIVNGAEGMIVGGTTG---------E-----------GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstG---------E-----------~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
+..+.+.|+++|.+.|+-| . ...++. .+.+..+.+.++ ++|||+.=|=.+..++.+
T Consensus 198 a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~---~~~l~~v~~~~~-~ipvia~GGI~~~~d~~k 273 (332)
T 1vcf_A 198 ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPT---ARAILEVREVLP-HLPLVASGGVYTGTDGAK 273 (332)
T ss_dssp HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBH---HHHHHHHHHHCS-SSCEEEESSCCSHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccH---HHHHHHHHHhcC-CCeEEEECCCCCHHHHHH
Confidence 4577889999999966433 1 112232 234455556554 699997444445666665
Q ss_pred HHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 182 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a 182 (359)
... +|||+|++..|+.+. ..++++.++++.+.+.
T Consensus 274 al~----~GAd~V~igr~~l~~~~~G~~gv~~~~~~l~~e 309 (332)
T 1vcf_A 274 ALA----LGADLLAVARPLLRPALEGAERVAAWIGDYLEE 309 (332)
T ss_dssp HHH----HTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH----hCCChHhhhHHHHHHHhccHHHHHHHHHHHHHH
Confidence 443 699999999997742 3566777777666553
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=1.2 Score=41.48 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=86.2
Q ss_pred cCCceEE--eeecCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 58 KALRLIT--AIKTPYL--PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 58 ~~~Gi~~--al~TPF~--~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
+-.|+-+ .+.+-|. .+++.|.+-+.++++.+.+.|++.|.+.-|.| .+++++-.++++.+.+.++ .+|+=++
T Consensus 131 ~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~~~~lv~~l~~~~~-~~~i~~H 206 (298)
T 2cw6_A 131 QSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIG---VGTPGIMKDMLSAVMQEVP-LAALAVH 206 (298)
T ss_dssp HHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTS---CCCHHHHHHHHHHHHHHSC-GGGEEEE
T ss_pred HHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC---CcCHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 3455433 3443343 24679999999999999999999999999998 5899999999999998874 5676665
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcC------CCC----CCCCHHHHHHHHHH
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHIN------PYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~p------P~y----~~~s~~~l~~yf~~ 178 (359)
. +++..-++..+..|.++|++.+-..- ||. ...+-|+++..++.
T Consensus 207 ~-Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~ 260 (298)
T 2cw6_A 207 C-HDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEG 260 (298)
T ss_dssp E-BCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHH
T ss_pred E-CCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHh
Confidence 4 45677778888899999999886542 322 23456777777764
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=92.52 E-value=0.35 Score=43.54 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+.+.|++.+++.+.+-++..... -.++++.+.+.+ ++|||++=|-.+.++..++. +.|+|++++..
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~--~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~----~~Gadgv~vGs 225 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGTKSGY--DTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAF----LAGADAALAAS 225 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTSCSCC--CHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHH----HTTCSEEEESH
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCCCC--CHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHH----HcCChHHHHHH
Confidence 44556667899999998765433322221 123444444443 68999875555556665544 48999999998
Q ss_pred CCCCCC-CHHHHHHHHH
Q 018253 162 PYYGKT-SLEGLISHFD 177 (359)
Q Consensus 162 P~y~~~-s~~~l~~yf~ 177 (359)
-.|..+ +.++..++++
T Consensus 226 al~~~~~~~~~~~~~l~ 242 (253)
T 1thf_D 226 VFHFREIDVRELKEYLK 242 (253)
T ss_dssp HHHTTCSCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 777665 7777777764
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=92.51 E-value=1.6 Score=38.34 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+++.|++.+.+....-+.+..+. .++++.+.+..+ ..++++++. +.++ ++.+.+.|+|.+++.+
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~---~~~i~~~~~~~~-~~~v~~~~~--t~~e----~~~~~~~G~d~i~~~~ 147 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETL---DELVSYIRTHAP-NVEIMADIA--TVEE----AKNAARLGFDYIGTTL 147 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCH---HHHHHHHHHHCT-TSEEEEECS--SHHH----HHHHHHTTCSEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCH---HHHHHHHHHhCC-CceEEecCC--CHHH----HHHHHHcCCCEEEeCC
Confidence 34566678899999887655433222333 456777777663 567776654 3444 4558889999999887
Q ss_pred CCCCCCC-----HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhc
Q 018253 162 PYYGKTS-----LEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQ 208 (359)
Q Consensus 162 P~y~~~s-----~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~ 208 (359)
+.|...+ ...-.++++++.+. .|++. .| .+ +++.+.++.+
T Consensus 148 ~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia------~G-GI~~~~~~~~~~~ 195 (223)
T 1y0e_A 148 HGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA------EG-NVITPDMYKRVMD 195 (223)
T ss_dssp TTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE------ES-SCCSHHHHHHHHH
T ss_pred CcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE------ec-CCCCHHHHHHHHH
Confidence 7663211 12234566666664 34442 12 34 6777777764
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=4.7 Score=37.86 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc-----cCcCC----CCHHHHHHHHHHHHHhhCCCcEEEEec------CCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT-----GEGQL----MSWDEHIMLIGHTVNCFGASVKVIGNT------GSNSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst-----GE~~~----LT~~Er~~li~~~v~~~~grvpViagv------g~~st~ 140 (359)
.+.+.++..+..+.+.||+.|+++..- |++.. +. .=.+|++.+.+..+.+.-|-+.. .+.+.+
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~--~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~ 160 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFR--YAAELVALIRERYGDRVSVGGAAYPEGHPESESLE 160 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCS--SHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHH
Confidence 789999999999999999998876422 31101 22 33466666555433223332222 233666
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
.-++..+.=.++|||.++.. ++| +.+.+.+|.+.+.++ .||+..=.|
T Consensus 161 ~d~~~Lk~Kv~aGAdf~iTQ-~ff---D~~~~~~f~~~~r~~Gi~vPIi~GImP 210 (310)
T 3apt_A 161 ADLRHFKAKVEAGLDFAITQ-LFF---NNAHYFGFLERARRAGIGIPILPGIMP 210 (310)
T ss_dssp HHHHHHHHHHHHHCSEEEEC-CCS---CHHHHHHHHHHHHHTTCCSCEECEECC
T ss_pred HHHHHHHHHHHcCCCEEEec-ccC---CHHHHHHHHHHHHHcCCCCeEEEEecc
Confidence 66776666678999965554 666 678888888888765 688877666
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.73 Score=43.44 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=59.0
Q ss_pred HHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEec---------CCCCHHHHHHHHHH
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---------GSNSTREAIHATEQ 148 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagv---------g~~st~~ai~la~~ 148 (359)
-++..+++|++.+-+..++.|. ...|.+|-.+.++.+++.+.. ...|.+.+ +..+.+..++.++.
T Consensus 86 ~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (307)
T 1ydo_A 86 GLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEA 165 (307)
T ss_dssp HHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHH
T ss_pred hHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 3666677889988888888875 445677766665555554321 23333221 11356677777777
Q ss_pred HHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 149 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
+.++|+|.+.+.. .....+++++.+.++.+.+..
T Consensus 166 ~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~ 199 (307)
T 1ydo_A 166 LFEFGISELSLGD-TIGAANPAQVETVLEALLARF 199 (307)
T ss_dssp HHHHTCSCEEEEC-SSCCCCHHHHHHHHHHHHTTS
T ss_pred HHhcCCCEEEEcC-CCCCcCHHHHHHHHHHHHHhC
Confidence 7777777555542 233345666666666666543
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=92.32 E-value=3.1 Score=40.03 Aligned_cols=120 Identities=12% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcc----------------CcCCCCHHHHHH----HHHHHHHhhCCCcEEEEecCCC--
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIM----LIGHTVNCFGASVKVIGNTGSN-- 137 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~----li~~~v~~~~grvpViagvg~~-- 137 (359)
.+.+-..+..++|.|||=+.+..| |+-- |.+-|.+ +++.+++.++.+ ||.+=++..
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGG-slenR~rf~~evv~aVr~~vg~~-~v~vRls~~~~ 239 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGG-SIENRARLLLEVVDAAIDVWSAA-RVGVHLAPRGD 239 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSS-SHHHHSHHHHHHHHHHHHHHCGG-GEEEEECTTCC
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCC-ChhhcHHHHHHHHHHHHHHcCCC-eEEEecccccc
Confidence 344555566679999999998763 2111 5666654 455555556555 777744432
Q ss_pred --------CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 138 --------STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 138 --------st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
+.++++++++..+++|+|.+-+..+.+.. .+.+.|.+. .||+.= | .++++..+++.
T Consensus 240 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-------~~~~~ik~~~~iPvi~~------G-git~e~a~~~l 305 (361)
T 3gka_A 240 AHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGD-------AIGQQLKAAFGGPFIVN------E-NFTLDSAQAAL 305 (361)
T ss_dssp SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTT-------CCHHHHHHHHCSCEEEE------S-SCCHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEe------C-CCCHHHHHHHH
Confidence 35789999999999999999888776322 233444443 586643 2 24899988887
Q ss_pred cC--CCeEEE
Q 018253 208 QS--PNLAGV 215 (359)
Q Consensus 208 ~~--pnivGi 215 (359)
+. -.+|++
T Consensus 306 ~~G~aD~V~i 315 (361)
T 3gka_A 306 DAGQADAVAW 315 (361)
T ss_dssp HTTSCSEEEE
T ss_pred HcCCccEEEE
Confidence 53 345554
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.31 E-value=1.2 Score=44.56 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+.+.+.+++++++|++.+.+..+.|. ..+-.+.++.+.+..+ ++||++|-+ .+.+++ +.+.++|+|++.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G~-----~~~~~e~i~~i~~~~p-~~pvi~g~~-~t~e~a----~~l~~~G~d~I~ 304 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHGH-----SRRVIETLEMIKADYP-DLPVVAGNV-ATPEGT----EALIKAGADAVK 304 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCS-----SHHHHHHHHHHHHHCT-TSCEEEEEE-CSHHHH----HHHHHTTCSEEE
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCCc-----hHHHHHHHHHHHHHCC-CceEEeCCc-CCHHHH----HHHHHcCCCEEE
Confidence 34566788999999999999776663 2456677878777774 589988743 344444 677789999999
Q ss_pred Ec
Q 018253 159 HI 160 (359)
Q Consensus 159 v~ 160 (359)
+.
T Consensus 305 v~ 306 (494)
T 1vrd_A 305 VG 306 (494)
T ss_dssp EC
T ss_pred Ec
Confidence 84
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.22 Score=50.39 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-----CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-----GASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-----~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
..+..+.+.|+++|.+.|..|-...-... ..+++..+.+.+ .+++|||+.=|=.+-.++++.. .+|||+|
T Consensus 355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~-~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaL----alGAdaV 429 (511)
T 1kbi_A 355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRA-PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKAL----CLGAKGV 429 (511)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSSTTCCC-HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHH----HHTCSEE
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCc-hHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHH----HcCCCEE
Confidence 34667889999999997766632111111 234455555555 4589999855544566666544 3799999
Q ss_pred EEcCCCCCCC---CHHHHHHHHHHHHh
Q 018253 158 LHINPYYGKT---SLEGLISHFDSVLS 181 (359)
Q Consensus 158 ~v~pP~y~~~---s~~~l~~yf~~Ia~ 181 (359)
++-.|+.+.. .++++.++++.+.+
T Consensus 430 ~iGr~~l~~~~~~G~~gv~~~l~~l~~ 456 (511)
T 1kbi_A 430 GLGRPFLYANSCYGRNGVEKAIEILRD 456 (511)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHhcChHHHHHHHHHHHH
Confidence 9999877543 24455555555443
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=92.16 E-value=4 Score=36.81 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=98.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
|-.++|-.+..+.++ .+.++|+|.|+++||+|= |.++-.++++.+.+ -++|++.=.+..+ .
T Consensus 11 ~~iDPdk~~~~~~~~----~~~~~GtD~i~vGGs~gv----t~~~~~~~v~~ik~---~~~Pvvlfp~~~~---~----- 71 (228)
T 3vzx_A 11 FKLDPNKDLPDEQLE----ILCESGTDAVIIGGSDGV----TEDNVLRMMSKVRR---FLVPCVLEVSAIE---A----- 71 (228)
T ss_dssp EEECTTSCCCTTHHH----HHHTSSCSEEEECCCSCC----CHHHHHHHHHHHTT---SSSCEEEECSCGG---G-----
T ss_pred EeECCCCCCCHHHHH----HHHHcCCCEEEECCcCCC----CHHHHHHHHHHhhc---cCCCEEEeCCCHH---H-----
Confidence 344555544444444 356899999999998775 67777777777665 3799998777631 1
Q ss_pred HHHhCCCCEEEEc------CCCCCCCCHHHHHHHHHHHHh--c-CCe--EEEeCCCCC-------CCCCCHHHHHHHhcC
Q 018253 148 QGFAVGMHAALHI------NPYYGKTSLEGLISHFDSVLS--M-GPT--IIYNVPSRT-------GQDIPPRVIHTMAQS 209 (359)
Q Consensus 148 ~a~~~Gadav~v~------pP~y~~~s~~~l~~yf~~Ia~--a-~Pi--iiYn~P~~t-------g~~ls~e~l~~La~~ 209 (359)
...|||++++. .|+|.-..+-+-.+-|....+ . .|. ++-| |..+ ...++++.+...+..
T Consensus 72 --v~~gaD~~l~pslln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~-p~s~~~~~~~a~~~~~~e~~~~~a~~ 148 (228)
T 3vzx_A 72 --IVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIAN-PDCKAAALTEADADLNMDDIVAYARV 148 (228)
T ss_dssp --CCSCCSEEEEEEETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECC-SSSHHHHHTTBCCCCCHHHHHHHHHH
T ss_pred --ccccCCEEEEeeecCCCCcchhhhHHHHHHHHcCCCCcccceeeeEEEEEC-CCCcceeeecccCCCCHHHHHHHHHH
Confidence 23699999886 244432222222222221111 2 342 2333 4322 234567777776632
Q ss_pred -----CCeEEEeccCc---hh----hHhhhhCCceEEEecCC----chhhhhhhhcCCceeeccccccc-HHHHHHHHH
Q 018253 210 -----PNLAGVKECVG---ND----RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLV-PGMMRELMF 271 (359)
Q Consensus 210 -----pnivGiK~ss~---d~----~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~-P~l~~~l~~ 271 (359)
=.++.+-. ++ +. ++++... +..+..|.. ++. .. +..|++|++.|++-+- |+...++.+
T Consensus 149 a~~~g~~~VYld~-sG~~~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a-~~-~~~gAD~VVVGSa~v~~p~~~~~~v~ 223 (228)
T 3vzx_A 149 SELLQLPIFYLEY-SGVLGDIEAVKKTKAVLE-TSTLFYGGGIKDAETA-KQ-YAEHADVIVVGNAVYEDFDRALKTVA 223 (228)
T ss_dssp HHHTTCSEEEEEC-TTSCCCHHHHHHHHHHCS-SSEEEEESSCCSHHHH-HH-HHTTCSEEEECTHHHHCHHHHHHHHH
T ss_pred HHHcCCCEEEecC-CCCcCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHH-HH-HHhCCCEEEEChHHhcCHHHHHHHHH
Confidence 25666665 33 22 2333331 344555442 223 23 3479999998887663 555555543
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=92.14 E-value=1.4 Score=41.26 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCC-CHHHHHHH----HHHHHHhh---CCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIML----IGHTVNCF---GASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~L-T~~Er~~l----i~~~v~~~---~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+.+++.+-+.||+..++.++.+-+... ..++-.++ -+.+.+.+ ++|.--++++--...+++++..+++.+.|
T Consensus 61 ~~~l~~m~~~GV~~~V~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~~~a~~el~~~~~~g 140 (334)
T 2hbv_A 61 AFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAAG 140 (334)
T ss_dssp HHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEECCCchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCccCHHHHHHHHHHHHHcC
Confidence 455666667899998888766533222 33332222 22333322 34433333444445567888888777889
Q ss_pred CCEEEEcCCCC-CCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 154 MHAALHINPYY-GKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 154 adav~v~pP~y-~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+.++-+.+-+. +..+.+.+...|+.+.+. +||+++--
T Consensus 141 ~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~lpv~iH~~ 179 (334)
T 2hbv_A 141 HLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPW 179 (334)
T ss_dssp CCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred CeEEEECCCCCCCCCCcHHHHHHHHHHHHCCCEEEECCC
Confidence 99987654322 124567788888888876 89999864
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.10 E-value=2.4 Score=38.20 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=79.9
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNS 138 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~s 138 (359)
.|+-...++-| +.|.-..+.-..-++. ++.|++-|=+.-.-|..-+=.+++-.+-+..+++.+++ .+|||.-++-.+
T Consensus 49 ~gv~v~tvigF-P~G~~~~~~k~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt 126 (226)
T 1vcv_A 49 RKVKLCVVADF-PFGALPTASRIALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR 126 (226)
T ss_dssp SSSEEEEEEST-TTCCSCHHHHHHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC
T ss_pred CCCeEEEEeCC-CCCCCchHHHHHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCC
Confidence 34555566777 5777888888888999 99999998777777755444567766777777777654 589999999889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++-+..++.+.++|||.|=..+=|.
T Consensus 127 ~eei~~a~~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 127 DEERYTLYDIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 89999999999999999887765444
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=91.81 E-value=1.4 Score=42.66 Aligned_cols=35 Identities=6% Similarity=-0.116 Sum_probs=15.9
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
++|++.|.+ +.+.+|+-.+.+.+.+.+.++++.++
T Consensus 135 ~~a~~~g~~-v~~~~ed~~r~~~~~~~~~~~~~~~~ 169 (370)
T 3rmj_A 135 KIAREYTDD-VEFSCEDALRSEIDFLAEICGAVIEA 169 (370)
T ss_dssp HHHTTTCSC-EEEEEETGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCE-EEEecCCCCccCHHHHHHHHHHHHHc
Confidence 334444443 33334444444555555555555444
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=91.76 E-value=1.6 Score=41.01 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=73.4
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NS 138 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~s 138 (359)
.|+..-+-||....-..|.+.+...++.-.+.|+|.|=+. .|+|. ++.+++. .++||++-=|. .+
T Consensus 170 ~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~-~t~e~-----------~~~vv~~--~~vPVv~~GG~~~~ 235 (295)
T 3glc_A 170 VGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY-YVEKG-----------FERIVAG--CPVPIVIAGGKKLP 235 (295)
T ss_dssp TTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE-CCTTT-----------HHHHHHT--CSSCEEEECCSCCC
T ss_pred cCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC-CCHHH-----------HHHHHHh--CCCcEEEEECCCCC
Confidence 4544444455433323566667777777778999977665 34431 3444443 36888763332 26
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
.+++++.++.+.++||+++.+.-=.|..+++..+.+-++.+..
T Consensus 236 ~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh 278 (295)
T 3glc_A 236 EREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVH 278 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHh
Confidence 8999999999999999999998877877888888888887754
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.76 E-value=2.5 Score=37.75 Aligned_cols=83 Identities=13% Similarity=-0.036 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcE--EEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK--VIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvp--Viagvg~~st~~ai~la~~a~~~Gad 155 (359)
.+.-...++..++.|+++|=+.-..|-......++-.+.++.+++.++ .++ +|.-.+..+.++..+.++.++++|+|
T Consensus 69 ~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 69 TSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCS
T ss_pred hhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 444445567788999999863222222222344566666777777665 232 24334556778899999999999999
Q ss_pred EEEEcC
Q 018253 156 AALHIN 161 (359)
Q Consensus 156 av~v~p 161 (359)
++-...
T Consensus 148 ~I~tst 153 (225)
T 1mzh_A 148 FIKTST 153 (225)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 994443
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.87 Score=43.61 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHH-------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 148 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E-------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~ 148 (359)
...+.+..+++.+.+.|+++|.+-|.+.+. .++..+ ..++++.+.+.+ +++|||++=+=.+.+++.+..
T Consensus 141 ~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~-g~~g~~~~~~~~~~~~~i~~ik~~~-~~iPVianGgI~s~eda~~~l-- 216 (350)
T 3b0p_A 141 ETYRGLAQSVEAMAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDF-PQLTFVTNGGIRSLEEALFHL-- 216 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECSCBC-----------CCCCCHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHH--
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCchhc-ccCcccccCCCcccHHHHHHHHHhC-CCCeEEEECCcCCHHHHHHHH--
Confidence 346678888999999999999998766432 112111 234566666655 368999865545677766654
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 018253 149 GFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~ 167 (359)
+ |||+||+--+.+..|
T Consensus 217 --~-GaD~V~iGRa~l~~P 232 (350)
T 3b0p_A 217 --K-RVDGVMLGRAVYEDP 232 (350)
T ss_dssp --T-TSSEEEECHHHHHCG
T ss_pred --h-CCCEEEECHHHHhCc
Confidence 3 899999998776544
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.61 Score=41.41 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++.+.+.|++.+++.+.+-++. .... +.++.+.+.. ++||+++=|-.+.+++.++. ++|||++++
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~----~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~----~~Ga~~v~v 226 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDV----ELIRRVADSV--RIPVIASGGAGRVEHFYEAA----AAGADAVLA 226 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCH----HHHHHHHHHC--SSCEEEESCCCSHHHHHHHH----HTTCSEEEE
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCH----HHHHHHHHhc--CCCEEEeCCCCCHHHHHHHH----HcCCcHHHH
Confidence 3446667788999998866443222 2222 3344444443 68999875554555555543 589999999
Q ss_pred cCCCCCCC-CHHHHHHHHHH
Q 018253 160 INPYYGKT-SLEGLISHFDS 178 (359)
Q Consensus 160 ~pP~y~~~-s~~~l~~yf~~ 178 (359)
..-.+... +.+++.+++++
T Consensus 227 gsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 227 ASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp SHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 98776543 66777777653
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=91.22 E-value=1.5 Score=40.15 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC--------CHHHHHHHHHHHHh
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------STREAIHATEQGFA 151 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~--------st~~ai~la~~a~~ 151 (359)
.++++++++-+.|.+.+=+.-.|-+ |+.++|.++++.+.+. ...|+.-+|.- +..+-|+++++.-+
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G~i~---l~~~~~~~~I~~~~~~---G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~Le 159 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGSSD---ISLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD 159 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCSSSC---CCHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCccc---CCHHHHHHHHHHHHHC---CCEEeeeccccCCcccCCCCHHHHHHHHHHHHH
Confidence 6777888888888888877655544 8899999999988763 35667766654 45888999999999
Q ss_pred CCCCEEEEcC
Q 018253 152 VGMHAALHIN 161 (359)
Q Consensus 152 ~Gadav~v~p 161 (359)
+||+.||+-.
T Consensus 160 AGA~~ViiEa 169 (251)
T 1qwg_A 160 AGADYVIIEG 169 (251)
T ss_dssp HTCSEEEECC
T ss_pred CCCcEEEEee
Confidence 9999999864
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.86 Score=44.06 Aligned_cols=70 Identities=10% Similarity=-0.044 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav 157 (359)
+...+.++.++++|++.|.+-.+.|-. +.-.+.++.+.+... ++||++| +.+ .+.++.+.++|||++
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G~~-----~~~~e~I~~ir~~~~-~~~Vi~G~V~T------~e~A~~a~~aGaD~I 166 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHAHA-----KYVGKTLKSLRQLLG-SRCIMAGNVAT------YAGADYLASCGADII 166 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCCSS-----HHHHHHHHHHHHHHT-TCEEEEEEECS------HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCc-----HhHHHHHHHHHHhcC-CCeEEEcCcCC------HHHHHHHHHcCCCEE
Confidence 445677999999999988875555531 223456666666654 6899996 542 345778889999999
Q ss_pred EEc
Q 018253 158 LHI 160 (359)
Q Consensus 158 ~v~ 160 (359)
.+.
T Consensus 167 ~Vg 169 (361)
T 3r2g_A 167 KAG 169 (361)
T ss_dssp EEC
T ss_pred EEc
Confidence 984
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.18 E-value=5 Score=36.41 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=87.3
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCCH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNST 139 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~st 139 (359)
++-.+.++=| +-|....+.-..-++.-++.|++-|=+-=..|+.-.=.+++-.+-++.+++.+++. ++||.=++-.+.
T Consensus 78 ~v~v~tVigF-P~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~ 156 (239)
T 3ngj_A 78 GVKVCTVIGF-PLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTN 156 (239)
T ss_dssp SCEEEEEEST-TTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCH
T ss_pred CCeEEEEecc-CCCCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCH
Confidence 4455555566 46777778888889999999999987777777655555666667777777776543 788888888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCeE
Q 018253 140 REAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPTI 186 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~Pii 186 (359)
++-++.++.+.++|||.|=..+=|- ...+.+++..+-+.+...++|-
T Consensus 157 eei~~a~~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~~v~VK 204 (239)
T 3ngj_A 157 EEKVEVCKRCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGDKALVK 204 (239)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGGGSEEE
T ss_pred HHHHHHHHHHHHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCCCceEE
Confidence 8888888999999999887765553 3356665554444332223443
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=91.06 E-value=1.1 Score=41.18 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~Ga 154 (359)
+.+......+-..+.|+|.+-+. ++| +. +.++.+++.+ +.+||++ |+...+.+++++.++.+.++||
T Consensus 157 s~~~i~~a~~~a~~~GAD~vkt~-~~~-----~~----e~~~~~~~~~-~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA 225 (263)
T 1w8s_A 157 APEIVAYAARIALELGADAMKIK-YTG-----DP----KTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGA 225 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE-CCS-----SH----HHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc-CCC-----CH----HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 45666666677778999976654 442 33 3345555555 4446655 5544489999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+++.+..-.+..+++....+-+.++.+
T Consensus 226 ~GvsvgraI~~~~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 226 LGIAVGRNVWQRRDALKFARALAELVY 252 (263)
T ss_dssp CEEEESHHHHTSTTHHHHHHHHHHHHC
T ss_pred eEEEEehhhcCCcCHHHHHHHHHHHHh
Confidence 999998877877888887777777664
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=3.4 Score=40.35 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcc----------------CcCCCCHHHHHHH----HHHHHHhhCCCcEEEEecCC--
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIML----IGHTVNCFGASVKVIGNTGS-- 136 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~l----i~~~v~~~~grvpViagvg~-- 136 (359)
+.+.+-..+..++|.|||=+.+..| |+ -=|.+.|.++ ++.+++.++.. ||.+=++.
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~y-GGslenR~rf~~Eiv~aVr~avg~~-~V~vRls~~~ 248 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEY-GGSLANRCKFITQVVQAVVSAIGAD-RVGVRVSPAI 248 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECSSC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCcc-CcChhhhhHHHHHHHHHHHHHhCCC-cEEEEecccc
Confidence 4555666667789999999988643 22 2346777554 44555555544 77665443
Q ss_pred --------CCHHHHHHHHHHHHhCC------CCEEEEcCCCCCC----C----C-HHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 137 --------NSTREAIHATEQGFAVG------MHAALHINPYYGK----T----S-LEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 137 --------~st~~ai~la~~a~~~G------adav~v~pP~y~~----~----s-~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
.+.++++++++.+++.| +|++-+..+.+.. + + ...-..+.+.|.+. .||+. +
T Consensus 249 ~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~-~-- 325 (402)
T 2hsa_B 249 DHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFIC-S-- 325 (402)
T ss_dssp CSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEE-E--
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEE-e--
Confidence 24678999999999999 9999998765421 2 1 11234555566655 57664 2
Q ss_pred CCCCCCCCHHHHHHHhcC--CCeEEE
Q 018253 192 SRTGQDIPPRVIHTMAQS--PNLAGV 215 (359)
Q Consensus 192 ~~tg~~ls~e~l~~La~~--pnivGi 215 (359)
.| ++++..+++.+. -.+|++
T Consensus 326 --G~--i~~~~a~~~l~~g~aD~V~i 347 (402)
T 2hsa_B 326 --GG--YTRELGIEAVAQGDADLVSY 347 (402)
T ss_dssp --SS--CCHHHHHHHHHTTSCSEEEE
T ss_pred --CC--CCHHHHHHHHHCCCCceeee
Confidence 23 388988887743 345544
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=7.3 Score=33.77 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.|.+.+.+.++.+.+.|++.|-+.-.+.+ . .+.++...+.. .+++++|.+..... +.++.|.++|||
T Consensus 16 ~d~~~~~~~~~~~~~~G~~~i~l~~~~~~-----~---~~~i~~i~~~~--~~~l~vg~g~~~~~---~~i~~a~~~Gad 82 (212)
T 2v82_A 16 ITPDEALAHVGAVIDAGFDAVEIPLNSPQ-----W---EQSIPAIVDAY--GDKALIGAGTVLKP---EQVDALARMGCQ 82 (212)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEETTSTT-----H---HHHHHHHHHHH--TTTSEEEEECCCSH---HHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh-----H---HHHHHHHHHhC--CCCeEEEeccccCH---HHHHHHHHcCCC
Confidence 47788999999999999999877544322 1 23444444444 35677766544433 367788889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEeccC--chhhHhh---hhC
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECV--GNDRVEH---YTG 229 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ss--~d~~l~~---~~~ 229 (359)
++.+ |. .+ .++.+..+... .++++ + .-+++.+.+..+ -...+++..+. +-..+.+ ...
T Consensus 83 ~V~~--~~---~~-~~~~~~~~~~g--~~~~~----g----~~t~~e~~~a~~~G~d~v~v~~t~~~g~~~~~~l~~~~~ 146 (212)
T 2v82_A 83 LIVT--PN---IH-SEVIRRAVGYG--MTVCP----G----CATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLP 146 (212)
T ss_dssp EEEC--SS---CC-HHHHHHHHHTT--CEEEC----E----ECSHHHHHHHHHTTCSEEEETTHHHHCHHHHHHHHTTSC
T ss_pred EEEe--CC---CC-HHHHHHHHHcC--CCEEe----e----cCCHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHHHhcc
Confidence 9962 22 12 33333322211 23321 1 124554444333 34555552211 1122322 222
Q ss_pred CceEEE--ecCCchhhhhhhhcCCceeeccccccc
Q 018253 230 NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLV 262 (359)
Q Consensus 230 ~~~~v~--~G~d~~~~~~~l~~Ga~G~is~~an~~ 262 (359)
.++.++ .|-...-+...+..|++|++.+.+.+-
T Consensus 147 ~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 147 SDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp TTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCC
T ss_pred CCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 134443 344333334456789999998876553
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.61 Score=43.68 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
++..|.+-+.++++.+.+.|++-|.+.-|.|- +++++-.++++.+.+.++ .+|+-++. +++..-+++.+..|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~~~~lv~~l~~~~~-~~~l~~H~-Hn~~Gla~An~laAv~a 227 (302)
T 2ftp_A 153 DGDVDPRQVAWVARELQQMGCYEVSLGDTIGV---GTAGATRRLIEAVASEVP-RERLAGHF-HDTYGQALANIYASLLE 227 (302)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCSEEEEEESSSC---CCHHHHHHHHHHHTTTSC-GGGEEEEE-BCTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---cCHHHHHHHHHHHHHhCC-CCeEEEEe-CCCccHHHHHHHHHHHh
Confidence 46899999999999999999999999988885 799999999999888764 57877765 45666677888888999
Q ss_pred CCCEEEEcCC------C----CCCCCHHHHHHHHHH
Q 018253 153 GMHAALHINP------Y----YGKTSLEGLISHFDS 178 (359)
Q Consensus 153 Gadav~v~pP------~----y~~~s~~~l~~yf~~ 178 (359)
|++.+=..-- | ....+-|+++.+++.
T Consensus 228 Ga~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~ 263 (302)
T 2ftp_A 228 GIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNG 263 (302)
T ss_dssp TCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHH
T ss_pred CCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHh
Confidence 9999866543 1 223556777766663
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.43 Score=45.06 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCceE--EeeecCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLI--TAIKTPYL--PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~--~al~TPF~--~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv 134 (359)
-.|+. ..+.+-|. .+++.|.+-+.++++.+.+.|++-|.+.-|.| .+++++-.++++.+.+.++ .+|+=++.
T Consensus 133 ~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~-~~~l~~H~ 208 (307)
T 1ydo_A 133 KANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIG---AANPAQVETVLEALLARFP-ANQIALHF 208 (307)
T ss_dssp HTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSC---CCCHHHHHHHHHHHHTTSC-GGGEEEEC
T ss_pred HCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 45543 34444443 24789999999999999999999999999999 5899999999999988764 46765554
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCC------C----CCCCCHHHHHHHHHH
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINP------Y----YGKTSLEGLISHFDS 178 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP------~----y~~~s~~~l~~yf~~ 178 (359)
+++..-++..+..|.++||+.+=..-- | ....+-|+++..++.
T Consensus 209 -Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~ 261 (307)
T 1ydo_A 209 -HDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQ 261 (307)
T ss_dssp -BGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHh
Confidence 567778888899999999998866543 2 233556777776653
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=90.80 E-value=5.7 Score=38.17 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc----------------CcCCCCHHHHHHHHH----HHHHhhCCC
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIG----HTVNCFGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~li~----~~v~~~~gr 127 (359)
.+..+.++++++. ..++|.|||=+.+..| |+ -=|.+-|.+++. .+++.++..
T Consensus 142 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~y-GGslenR~rf~~eiv~aVr~~vg~~ 220 (362)
T 4ab4_A 142 ALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRY-GGSLENRARLLLEVTDAAIEVWGAQ 220 (362)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCC-CCchhhHHHHHHHHHHHHHHhcCCC
Confidence 3555555555554 4579999999998763 11 125666765544 444555545
Q ss_pred cEEEEecCCC----------CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Q 018253 128 VKVIGNTGSN----------STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTG 195 (359)
Q Consensus 128 vpViagvg~~----------st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg 195 (359)
||.+=++.. +.++++++++..+++|+|.+-+..+.... .+.+.|.+. .||+.= |
T Consensus 221 -~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-------~~~~~ik~~~~iPvi~~------G 286 (362)
T 4ab4_A 221 -RVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADD-------SIGPLIKEAFGGPYIVN------E 286 (362)
T ss_dssp -GEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTT-------CCHHHHHHHHCSCEEEE------S
T ss_pred -ceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCH-------HHHHHHHHHCCCCEEEe------C
Confidence 777655432 25679999999999999999888775321 233444443 576643 2
Q ss_pred CCCCHHHHHHHhcC--CCeEEE
Q 018253 196 QDIPPRVIHTMAQS--PNLAGV 215 (359)
Q Consensus 196 ~~ls~e~l~~La~~--pnivGi 215 (359)
.++++..+++.+. -.+|++
T Consensus 287 -git~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 287 -RFDKASANAALASGKADAVAF 307 (362)
T ss_dssp -SCCHHHHHHHHHTTSCSEEEE
T ss_pred -CCCHHHHHHHHHcCCccEEEE
Confidence 2489988887743 345554
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=1 Score=42.88 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=47.0
Q ss_pred HHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEecCC------CCHHHHHHHHHHHHhC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNTGS------NSTREAIHATEQGFAV 152 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagvg~------~st~~ai~la~~a~~~ 152 (359)
++..+++|++.+-+..++.|.+ ..|.+|-.+.++.+++.+. ....|.+++.. .+.+..+++++.+.++
T Consensus 102 i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (337)
T 3ble_A 102 VDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKE 181 (337)
T ss_dssp HHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHc
Confidence 4445556666666666655542 3455555444444444322 12334433322 2345555566666666
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
|+|.+.+.- .....+++++.+.++.+.+.
T Consensus 182 Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~ 210 (337)
T 3ble_A 182 HIERIFLPD-TLGVLSPEETFQGVDSLIQK 210 (337)
T ss_dssp CCSEEEEEC-TTCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEec-CCCCcCHHHHHHHHHHHHHh
Confidence 665544432 22334455555555555543
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.63 Score=45.06 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++.+++.|++.|.+..+.|- .++..+.++.+.+.. +.+||++|... + .+.++.+.++|||++.+
T Consensus 110 ~~~~~~lieaGvd~I~idta~G~-----~~~~~~~I~~ik~~~-p~v~Vi~G~v~-t----~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEAGVDVLLIDSSHGH-----SEGVLQRIRETRAAY-PHLEIIGGNVA-T----AEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTT-----SHHHHHHHHHHHHHC-TTCEEEEEEEC-S----HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-----CHHHHHHHHHHHHhc-CCCceEeeeeC-C----HHHHHHHHHcCCCEEEE
Confidence 45677889999999887654442 245666777777766 36899887332 2 44567778899999998
|
| >3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=3.3 Score=41.03 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=78.2
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~a 142 (359)
-|-+++.--+.-+.+.+.+-.+...|+|=+====.-+....+.++||...+-.+++. ++.+.--.+++++. ++|.
T Consensus 159 gtiiKPklGLs~~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~-~~eM 237 (444)
T 3kdn_A 159 GVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITAD-LLEM 237 (444)
T ss_dssp EECCSSSSCCCHHHHHHHHHHHHHTTCCEEECCTTCCSCTTSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSS-HHHH
T ss_pred EeecCcccCCCHHHHHHHHHHHHhcCCceeecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEeecCCC-HHHH
Confidence 344455445899999999999999999954222244567789999999887776664 34444457799986 9999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCC-HHHHHHHHHH
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTS-LEGLISHFDS 178 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s-~~~l~~yf~~ 178 (359)
+++++.|.++|++++|+-. +....+ -..+.+|++.
T Consensus 238 ~~Ra~~a~e~G~~~~mvd~-~~~G~~a~~~l~~~~~~ 273 (444)
T 3kdn_A 238 EQRLEVLADLGLKHAMVDV-VITGWGALRYIRDLAAD 273 (444)
T ss_dssp HHHHHHHHHHTCCEEEEEH-HHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcc-ccccHHHHHHHHHhccc
Confidence 9999999999999988863 222222 3445555553
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=90.53 E-value=1.5 Score=42.02 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEE----ecCCC-CHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIG----NTGSN-STRE 141 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpVia----gvg~~-st~~ 141 (359)
|.+.+.+.++.+.+.|+++|=+++.. |-...-..+--.++++.+.+.+ .+||.+ |.... +.++
T Consensus 68 ~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v--~~PV~vKiR~g~~~~~~~~~ 145 (350)
T 3b0p_A 68 DPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV--RVPVTVKMRLGLEGKETYRG 145 (350)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC--SSCEEEEEESCBTTCCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh--CCceEEEEecCcCccccHHH
Confidence 56889999999999999999998641 2222224444556667766655 478888 33222 3468
Q ss_pred HHHHHHHHHhCCCCEEEEcCC
Q 018253 142 AIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP 162 (359)
++++++.++++|+|++.+..-
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r 166 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHAR 166 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 999999999999999998653
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=1.6 Score=40.64 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p---------P~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
++.-++.++.... .|+.++++|+|++++-. |.-...|.++++.|-+.|++. .|+++=|.|. -
T Consensus 16 g~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-g 88 (275)
T 1o66_A 16 GEKIAMLTAYESS------FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPF-G 88 (275)
T ss_dssp TCCEEEEECCSHH------HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCT-T
T ss_pred CCcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCC-C
Confidence 4434555666533 46677789999998743 233446789999999999986 4788899994 4
Q ss_pred CCCCCHHHHH----HHhcCCCeEEEeccCch---hhHhhhhCCceEEE
Q 018253 195 GQDIPPRVIH----TMAQSPNLAGVKECVGN---DRVEHYTGNGIVVW 235 (359)
Q Consensus 195 g~~ls~e~l~----~La~~pnivGiK~ss~d---~~l~~~~~~~~~v~ 235 (359)
++..+++... +|.+ -...|+|.+.+. .+++.....++.|+
T Consensus 89 sy~~s~~~a~~na~rl~k-aGa~aVklEdg~e~~~~I~al~~agIpV~ 135 (275)
T 1o66_A 89 AYQQSKEQAFAAAAELMA-AGAHMVKLEGGVWMAETTEFLQMRGIPVC 135 (275)
T ss_dssp SSSSCHHHHHHHHHHHHH-TTCSEEEEECSGGGHHHHHHHHHTTCCEE
T ss_pred CccCCHHHHHHHHHHHHH-cCCcEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 6667775443 6777 889999988775 24555544444444
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.44 E-value=7.1 Score=34.58 Aligned_cols=129 Identities=8% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCc-------cC--cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTT-------GE--GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~Gst-------GE--~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
.+...++.+.+.|.++|=+.... |. ...++.++..++-+...+ .+=++..+......+.++..+.++.|+
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGTGVYVAEKSSDWEKMFKFAK 101 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEEEEECCSSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHH-cCCeEEEEeccCCccHHHHHHHHHHHH
Confidence 36778888889999999887643 22 245677777777655443 332333332233346677788888899
Q ss_pred hCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEec
Q 018253 151 AVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKE 217 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ 217 (359)
++|++.+.+.|. .+. .+....+++. +.+.+-|.|..+ ..-+++.+.++.+ .|++.-.=|
T Consensus 102 ~lGa~~v~~~~~------~~~-~~~l~~~a~~~gv~l~~En~~~~~-~~~~~~~~~~ll~~~~~~~g~~~D 164 (262)
T 3p6l_A 102 AMDLEFITCEPA------LSD-WDLVEKLSKQYNIKISVHNHPQPS-DYWKPENLLKAISGRSQSLGSCSD 164 (262)
T ss_dssp HTTCSEEEECCC------GGG-HHHHHHHHHHHTCEEEEECCSSSS-SSSSHHHHHHHHTTSCTTEEEEEE
T ss_pred HcCCCEEEecCC------HHH-HHHHHHHHHHhCCEEEEEeCCCcc-ccCCHHHHHHHHHhCCCceEEEec
Confidence 999998888643 122 2333334443 578888887532 2237888888874 577643334
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.91 Score=43.87 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc------------------------------Cc-----------CCCCHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG------------------------------EG-----------QLMSWDEHIM 115 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG------------------------------E~-----------~~LT~~Er~~ 115 (359)
|.+...+.+++..+.|++++.+.-.+. ++ ..++++
T Consensus 144 d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~---- 219 (368)
T 2nli_A 144 DDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPR---- 219 (368)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHH----
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHH----
Confidence 678888888888889988876554321 11 234433
Q ss_pred HHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 116 LIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 116 li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.++.+++.+ ++||++ |+ .+ .+.++.+.++|+|++.+..
T Consensus 220 ~i~~lr~~~--~~PvivK~v--~~----~e~a~~a~~~Gad~I~vs~ 258 (368)
T 2nli_A 220 DIEEIAGHS--GLPVFVKGI--QH----PEDADMAIKRGASGIWVSN 258 (368)
T ss_dssp HHHHHHHHS--SSCEEEEEE--CS----HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHc--CCCEEEEcC--CC----HHHHHHHHHcCCCEEEEcC
Confidence 366666655 578888 55 23 4567888999999999964
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=1.5 Score=40.89 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=70.2
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCc--CCCCHHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG--QLMSWDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~--~~LT~~Er~~li~~~v~~~~grvpViagv 134 (359)
..||+-..+=-|.+.|. .|.+...++++.+++.|++-|=++| ||.-+ .--..+|..+++..+......++||.+-+
T Consensus 8 imgilN~TpDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT 87 (280)
T 1eye_A 8 VMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDT 87 (280)
T ss_dssp EEEEEECSCCTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCcCCCcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeC
Confidence 45666543333877675 6899999999999999999999998 54322 33346677777755544333367776655
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
.. . +-++.|.++|++-+--+.-... . + +-+..+++. .|+++-+.
T Consensus 88 ~~--~----~va~aAl~aGa~iINdvsg~~~--d-~---~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 88 MR--A----DVARAALQNGAQMVNDVSGGRA--D-P---AMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp SC--H----HHHHHHHHTTCCEEEETTTTSS--C-T---THHHHHHHHTCCEEEECC
T ss_pred CC--H----HHHHHHHHcCCCEEEECCCCCC--C-H---HHHHHHHHhCCeEEEEcC
Confidence 43 2 3345566679987766543211 1 2 234444554 78888775
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=90.10 E-value=9.7 Score=33.78 Aligned_cols=175 Identities=13% Similarity=0.090 Sum_probs=95.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEc------cCccCc----------CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVG------GTTGEG----------QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~------GstGE~----------~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
-.+..|.+.+.+.++.+.+. ++.|-+. -.-|.+ .-.+.+.-.++++.+.+.+ ++||.++++
T Consensus 12 ~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~--~~pv~~~~~ 88 (248)
T 1geq_A 12 TAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS--STPIVLMTY 88 (248)
T ss_dssp ETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC--CCCEEEEEC
T ss_pred eCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC--CCCEEEEec
Confidence 34557778889999988888 9988877 222221 1124555567777777654 468887764
Q ss_pred CCCH--HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CC-eEEEeCCCCCCCCCCHHHHHHHhc-CC
Q 018253 136 SNST--REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GP-TIIYNVPSRTGQDIPPRVIHTMAQ-SP 210 (359)
Q Consensus 136 ~~st--~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~P-iiiYn~P~~tg~~ls~e~l~~La~-~p 210 (359)
.+.. ....+.++.+.++|||++.+. ... .++..++.+.+.+. .. ++..+ | .-+.+.++.+.+ .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gad~v~~~--~~~---~~~~~~~~~~~~~~g~~~~~~i~-~-----~t~~e~~~~~~~~~d 157 (248)
T 1geq_A 89 YNPIYRAGVRNFLAEAKASGVDGILVV--DLP---VFHAKEFTEIAREEGIKTVFLAA-P-----NTPDERLKVIDDMTT 157 (248)
T ss_dssp HHHHHHHCHHHHHHHHHHHTCCEEEET--TCC---GGGHHHHHHHHHHHTCEEEEEEC-T-----TCCHHHHHHHHHHCS
T ss_pred cchhhhcCHHHHHHHHHHCCCCEEEEC--CCC---hhhHHHHHHHHHHhCCCeEEEEC-C-----CCHHHHHHHHHhcCC
Confidence 2211 012467888889999999984 221 12333333333333 22 33332 2 134567777763 44
Q ss_pred CeEEE---------eccC-ch--hh---HhhhhCCceEEEecCCc-hhhhhhhhcCCceeeccccc
Q 018253 211 NLAGV---------KECV-GN--DR---VEHYTGNGIVVWSGNDD-QCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 211 nivGi---------K~ss-~d--~~---l~~~~~~~~~v~~G~d~-~~~~~~l~~Ga~G~is~~an 260 (359)
.++.+ |... .+ .. +++..+-.+.+-.|-.. .-+...+..|++|++.|++-
T Consensus 158 ~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai 223 (248)
T 1geq_A 158 GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSAL 223 (248)
T ss_dssp SEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHH
Confidence 34433 1100 11 12 22222333443345443 33444458899999988653
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.97 E-value=2.1 Score=40.42 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccC----cCCCCHHHHHHHHHHHHHhh-------CCCcEEEEecCC-CCHHHHHHH
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGE----GQLMSWDEHIMLIGHTVNCF-------GASVKVIGNTGS-NSTREAIHA 145 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE----~~~LT~~Er~~li~~~v~~~-------~grvpViagvg~-~st~~ai~l 145 (359)
.+.+.+.++.+.+ |+|++-++.++-- -..-..+.-.++++.+.+.+ +.++||++=++. .+.++..++
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 6777777776654 9999988764221 11112333457777777766 346899997764 456788999
Q ss_pred HHHHHhCCCCEEEEcCCC
Q 018253 146 TEQGFAVGMHAALHINPY 163 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~ 163 (359)
++.+++.|+|++.+..-.
T Consensus 231 a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 231 ADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHHHTTCSEEEECCCB
T ss_pred HHHHHHcCCcEEEEeCCc
Confidence 999999999999998643
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.78 Score=43.63 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHH--------HHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--------HIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~E--------r~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~ 152 (359)
..++.+++.|+++|.+.++.|- ...+..+ -..++..+++.+ ++|||+ |+. +..++++. ..+
T Consensus 161 e~A~~a~~aGad~Ivvs~hgG~-~~~~~~~~~~g~~g~~~~~l~~v~~~~--~ipVIa~GGI~--~g~Dv~ka----lal 231 (336)
T 1ypf_A 161 EAVRELENAGADATKVGIGPGK-VCITKIKTGFGTGGWQLAALRWCAKAA--SKPIIADGGIR--TNGDVAKS----IRF 231 (336)
T ss_dssp HHHHHHHHHTCSEEEECSSCST-TCHHHHHHSCSSTTCHHHHHHHHHHTC--SSCEEEESCCC--STHHHHHH----HHT
T ss_pred HHHHHHHHcCCCEEEEecCCCc-eeecccccCcCCchhHHHHHHHHHHHc--CCcEEEeCCCC--CHHHHHHH----HHc
Confidence 3567788999999998544332 1111122 244555555555 799999 554 45555543 347
Q ss_pred CCCEEEEcCCCCC
Q 018253 153 GMHAALHINPYYG 165 (359)
Q Consensus 153 Gadav~v~pP~y~ 165 (359)
|||+|++-.|+..
T Consensus 232 GAdaV~iGr~~l~ 244 (336)
T 1ypf_A 232 GATMVMIGSLFAG 244 (336)
T ss_dssp TCSEEEESGGGTT
T ss_pred CCCEEEeChhhhc
Confidence 9999999999874
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=2.1 Score=41.39 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccC----c-----------CCCCHHHHHH----HHHHHHHhhCCCcEEEEecC----
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGE----G-----------QLMSWDEHIM----LIGHTVNCFGASVKVIGNTG---- 135 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE----~-----------~~LT~~Er~~----li~~~v~~~~grvpViagvg---- 135 (359)
+.+.+-.++..++|.|||=+.+..|= | +-=|.+.|.+ +++.+++.++.+ ||.+=++
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~ 245 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAH 245 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEeccccc
Confidence 45666677778899999999887541 1 1123566744 455566666655 7776554
Q ss_pred ------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCH-HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 136 ------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSL-EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 136 ------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~-~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
..+.++++++++..++.|+|.+-+..+.+..... ..-..+.+.|.++ .||+. + | .++++...++
T Consensus 246 ~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~-~-----G-~i~~~~a~~~ 318 (376)
T 1icp_A 246 YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIV-A-----G-GYDREDGNRA 318 (376)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEE-E-----S-SCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEE-e-----C-CCCHHHHHHH
Confidence 2356789999999999999999988775432111 0111233445444 47654 2 2 2478888877
Q ss_pred hcC--CCeEEE
Q 018253 207 AQS--PNLAGV 215 (359)
Q Consensus 207 a~~--pnivGi 215 (359)
.+. -.+|++
T Consensus 319 l~~g~aD~V~~ 329 (376)
T 1icp_A 319 LIEDRADLVAY 329 (376)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCCcEEee
Confidence 643 344444
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.92 Score=43.76 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
.+.++.+++.|++.|.+..+.|.. +...+.++.+.+.. .+||++|... + .+.++.+.++|||++.+.
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~-----~~~~~~i~~i~~~~--~~~Vivg~v~-t----~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHS-----LNIIRTLKEIKSKM--NIDVIVGNVV-T----EEATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSB-----HHHHHHHHHHHHHC--CCEEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCc-----HHHHHHHHHHHHhc--CCcEEEccCC-C----HHHHHHHHHcCcCEEEEe
Confidence 567788889999999887666642 44556677766665 5899984321 2 455778889999999983
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=89.85 E-value=1.6 Score=40.69 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=73.6
Q ss_pred cCCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCc-CCCC-HHHHHHHHHHHHHhhCC-CcEEEE
Q 018253 58 KALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-QLMS-WDEHIMLIGHTVNCFGA-SVKVIG 132 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~-~~LT-~~Er~~li~~~v~~~~g-rvpVia 132 (359)
+..|++-..+--|.+.|+ .|.+...++++.+++.|++-|=++| ||.-+ ...+ .+|..+++..+...... ++||.+
T Consensus 16 ~imGilN~TpdSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSI 95 (282)
T 1aj0_A 16 HVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISV 95 (282)
T ss_dssp EEEEEEECCTTTSCCCCCCTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEEEEEeCCCCccccccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 367775543434866664 5789999999999999999999999 66332 2333 56666665544332221 567766
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
-+.. . +-++.|.++|++-+--+.-. ..+++ +..+++. .|+++-+.
T Consensus 96 DT~~--~----~va~aAl~aGa~iINdvsg~----~d~~~---~~~~a~~~~~vVlmh~ 141 (282)
T 1aj0_A 96 DTSK--P----EVIRESAKVGAHIINDIRSL----SEPGA---LEAAAETGLPVCLMHM 141 (282)
T ss_dssp ECCC--H----HHHHHHHHTTCCEEEETTTT----CSTTH---HHHHHHHTCCEEEECC
T ss_pred eCCC--H----HHHHHHHHcCCCEEEECCCC----CCHHH---HHHHHHhCCeEEEEcc
Confidence 5543 2 33455555699877666443 11222 3344444 68887765
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=89.80 E-value=4.9 Score=36.69 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCC-CCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGS-NSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViagvg~-~st~~ai~la~~a~~~G 153 (359)
-|.+.+ ++.+.+.|++-+-+.....+....+.+. +++. +. -+++++.++.. .+.++++++++.++++|
T Consensus 23 p~~~~~---~~~l~~~Gad~ielg~pr~~~~g~~~~~---~~~~----l~~~~~~~~pn~~~~~~~~~~~~f~~~a~~ag 92 (264)
T 1xm3_A 23 PSFDIQ---KEAVAVSESDILTFAVRRMNIFEASQPN---FLEQ----LDLSKYTLLPNTAGASTAEEAVRIARLAKASG 92 (264)
T ss_dssp SCHHHH---HHHHHHHTCSEEEEETTSSTTC----------CTT----CCGGGSEEEEECTTCSSHHHHHHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHcCCeEEEEcccccccCCCCHHH---HHHH----HHhcCCeEcCCccccCCHHHHHHHHHHHHHcC
Confidence 344444 3677788999997766534422223322 2222 22 25777777654 78899999999999986
Q ss_pred CCEEE-E-cCCCC--CCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEE-ec------cCc
Q 018253 154 MHAAL-H-INPYY--GKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGV-KE------CVG 220 (359)
Q Consensus 154 adav~-v-~pP~y--~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGi-K~------ss~ 220 (359)
.+.++ + +.|.. .....+++++..++.... ..++.+..| +++.+.++.+ -..++.. .- ...
T Consensus 93 g~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~-------~~~~a~~~~~~gad~v~~~~~~~Gt~~~~~ 165 (264)
T 1xm3_A 93 LCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSD-------DVVLARKLEELGVHAIMPGASPIGSGQGIL 165 (264)
T ss_dssp CCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECS-------CHHHHHHHHHHTCSCBEECSSSTTCCCCCS
T ss_pred CCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCC-------CHHHHHHHHHhCCCEEEECCcccCCCCCCC
Confidence 54442 2 22321 123445666666665443 455556554 2455666653 2222211 10 000
Q ss_pred hh----hHhhhhCCceEEEecCC--chhhhhhhhcCCceeecccc
Q 018253 221 ND----RVEHYTGNGIVVWSGND--DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 221 d~----~l~~~~~~~~~v~~G~d--~~~~~~~l~~Ga~G~is~~a 259 (359)
+. ++++..+-.+.+-.|-. +.. ...+.+|++|++.+++
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda-~~~~~~GAdgViVGSA 209 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDA-AYAMELGADGVLLNTA 209 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHH-HHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHH-HHHHHcCCCEEEEcHH
Confidence 11 23333332344444553 233 3457899999998875
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=2.3 Score=41.18 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHH-HCCCCEEEEccC-----------------ccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecC
Q 018253 78 LEAYDDLVNMQI-VNGAEGMIVGGT-----------------TGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTG 135 (359)
Q Consensus 78 ~~~l~~li~~li-~~Gv~Gl~v~Gs-----------------tGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg 135 (359)
.+.+.+-.+... ++|.|||=+.+. |.|+--.|.+.|.+++..+++ .++.. ||.+=++
T Consensus 173 i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~-~v~vRis 251 (379)
T 3aty_A 173 IPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSD-RVGLRIS 251 (379)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGG-GEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCC-eEEEEEC
Confidence 344556666777 899999999775 445444477777766555554 44434 5665222
Q ss_pred ----------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH
Q 018253 136 ----------SNSTREAIHATEQGFAVGMHAALHINPYYGKTS-LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV 202 (359)
Q Consensus 136 ----------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s-~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~ 202 (359)
..+.++++++++..++.|+|.+-+..+.+..+. +. + .+.|.+. .||+.= -| ++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~---~-~~~ir~~~~iPvi~~-----G~--it~~~ 320 (379)
T 3aty_A 252 PLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGD---V-VAWVRGSYSGVKISN-----LR--YDFEE 320 (379)
T ss_dssp TTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCC---H-HHHHHTTCCSCEEEE-----SS--CCHHH
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccH---H-HHHHHHHCCCcEEEE-----CC--CCHHH
Confidence 346788999999999999999998875432110 11 3 4455554 576642 13 38888
Q ss_pred HHHHhcC--CCeEEE
Q 018253 203 IHTMAQS--PNLAGV 215 (359)
Q Consensus 203 l~~La~~--pnivGi 215 (359)
..++.+. -.+|++
T Consensus 321 a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 321 ADQQIREGKVDAVAF 335 (379)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCeEEEe
Confidence 8887743 345544
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=89.63 E-value=6.2 Score=34.96 Aligned_cols=134 Identities=5% Similarity=0.003 Sum_probs=75.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-Eec----CCC---CHHHHHHHHHHHHhC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNT----GSN---STREAIHATEQGFAV 152 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVi-agv----g~~---st~~ai~la~~a~~~ 152 (359)
+...++.+.+.|.+||=+.+.......++.++..++- ...+.. .+.+. ++. ... ..+...+.++.|+++
T Consensus 21 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~-~~~~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 97 (272)
T 2q02_A 21 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVR-NLAEKY--GLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGV 97 (272)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHH-HHHHHT--TCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeeccccccccccccCHHHHH-HHHHHc--CCeEEechhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 4667777888999999876532222222333333333 333333 34442 222 111 135567778888999
Q ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHHHHHhc-C-CCeEEEec
Q 018253 153 GMHAALHINPYYGKTSLEGL-ISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVIHTMAQ-S-PNLAGVKE 217 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l-~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~l~~La~-~-pnivGiK~ 217 (359)
|++.+.+.+........+.+ .+.++.+++. +.+.+-|.+.....--+++.+.+|.+ + |++.-.=|
T Consensus 98 G~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~D 170 (272)
T 2q02_A 98 GARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAGSPFKVLLD 170 (272)
T ss_dssp TCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhCcCeEEEEE
Confidence 99998886544433334666 7888887753 45667776522223345777777763 3 66543333
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=89.60 E-value=5.4 Score=36.21 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV--iagv--g~~st~~ai~la~~a 149 (359)
.-..+.++++++...+.|+.++++.-+ .+..+.+...+ .++| ++|. |..+++.-+.-++.|
T Consensus 39 ~~t~~~i~~lc~eA~~~~~~aVcV~p~--------------~v~~a~~~L~~s~v~v~tVigFP~G~~~~~~Kv~Ea~~A 104 (239)
T 3ngj_A 39 DATEEQIRKLCSEAAEYKFASVCVNPT--------------WVPLCAELLKGTGVKVCTVIGFPLGATPSEVKAYETKVA 104 (239)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG--------------GHHHHHHHHTTSSCEEEEEESTTTCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEECHH--------------HHHHHHHHhCCCCCeEEEEeccCCCCCchHHHHHHHHHH
Confidence 345688999999999999999998753 23333444333 3454 4554 667888889999999
Q ss_pred HhCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhcC---Ce-EEEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 150 FAVGMHAALHINPYY-G-KTSLEGLISHFDSVLSMG---PT-IIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 150 ~~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a~---Pi-iiYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
.+.|||.+-++.++- . ..+.+.+.+-.++|.++. ++ +||. ++. |+.+.+.+.++ .-..-.||-|+|
T Consensus 105 i~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlE----t~~-Lt~eei~~a~~ia~~aGADfVKTSTG 179 (239)
T 3ngj_A 105 VEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIE----CCY-LTNEEKVEVCKRCVAAGAEYVKTSTG 179 (239)
T ss_dssp HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECC----GGG-SCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred HHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEe----cCC-CCHHHHHHHHHHHHHHCcCEEECCCC
Confidence 999999997776643 2 245667777777777652 22 2443 454 88888887754 346667898855
Q ss_pred ---------hhh-HhhhhCCceEE--EecCCc--hhhhhhhhcCCc--eeec
Q 018253 221 ---------NDR-VEHYTGNGIVV--WSGNDD--QCHDARWNHGAT--GVIS 256 (359)
Q Consensus 221 ---------d~~-l~~~~~~~~~v--~~G~d~--~~~~~~l~~Ga~--G~is 256 (359)
|.+ +++..++++.| -.|--+ .++ .++.+|++ |.-+
T Consensus 180 f~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~-~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 180 FGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAM-KMINNGASRIGASA 230 (239)
T ss_dssp SSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHH-HHHHTTEEEEEESC
T ss_pred CCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHH-HHHHhcccceeccc
Confidence 123 23334444444 333322 233 45788988 5543
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.49 E-value=11 Score=33.63 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=98.3
Q ss_pred CceEEeeecCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec----
Q 018253 60 LRLITAIKTPYLPDGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT---- 134 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~I-D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv---- 134 (359)
.|+++..-.+ +++-+ +.....++...+.+.|+.|+-+.+ .+-++.+.+.+ ++||+.-.
T Consensus 18 ~~livscq~~--~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v--~~Pvig~~k~d~ 80 (232)
T 3igs_A 18 GGLIVSCQPV--PGSPLDKPEIVAAMALAAEQAGAVAVRIEG-------------IDNLRMTRSLV--SVPIIGIIKRDL 80 (232)
T ss_dssp CCEEEECCCC--TTCTTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHHTTC--CSCEEEECBCCC
T ss_pred CCEEEEEeCC--CCCCCCCcchHHHHHHHHHHCCCeEEEECC-------------HHHHHHHHHhc--CCCEEEEEeecC
Confidence 4666655333 22222 345688889999999999988731 23455555555 57986311
Q ss_pred CC--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-C
Q 018253 135 GS--NSTREAIHATEQGFAVGMHAALHINPYYGKT-SLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-P 210 (359)
Q Consensus 135 g~--~st~~ai~la~~a~~~Gadav~v~pP~y~~~-s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~-p 210 (359)
+. .-.....+.++.+.++|||.+++.......+ ..+++++++++. ..+++ -+. -+.+...+..+. .
T Consensus 81 ~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~--g~~v~-~~v-------~t~eea~~a~~~Ga 150 (232)
T 3igs_A 81 DESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH--HLLTM-ADC-------SSVDDGLACQRLGA 150 (232)
T ss_dssp SSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEE-EEC-------CSHHHHHHHHHTTC
T ss_pred CCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC--CCEEE-EeC-------CCHHHHHHHHhCCC
Confidence 11 1111234556777889999998876543323 334455544432 13433 232 246666666543 4
Q ss_pred CeEEEecc---------Cchhh-HhhhhCCceEEEe--cCC-chhhhhhhhcCCceeecccccccHHHHHH
Q 018253 211 NLAGVKEC---------VGNDR-VEHYTGNGIVVWS--GND-DQCHDARWNHGATGVISVTSNLVPGMMRE 268 (359)
Q Consensus 211 nivGiK~s---------s~d~~-l~~~~~~~~~v~~--G~d-~~~~~~~l~~Ga~G~is~~an~~P~l~~~ 268 (359)
.++|+... ..+.. +.+....++.++. |-. ..-+...+.+|++|++.|.+-.-|....+
T Consensus 151 d~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~p~~~~~ 221 (232)
T 3igs_A 151 DIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICG 221 (232)
T ss_dssp SEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHCHHHHHH
T ss_pred CEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcCHHHHHH
Confidence 56664321 11221 2222211444443 331 12223457789999999977766765443
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=89.37 E-value=1.4 Score=42.96 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++.+++.|++.+.++.+.| +.+.-.++++.+.+.++ ++||+++ +. + .+.++.+.++|+|++.+
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g-----~~~~~~e~i~~ir~~~~-~~pviv~~v~--~----~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHG-----HSTRIIELIKKIKTKYP-NLDLIAGNIV--T----KEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCC-----SSHHHHHHHHHHHHHCT-TCEEEEEEEC--S----HHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCCC-----ChHHHHHHHHHHHHHCC-CCeEEEcCCC--c----HHHHHHHHhcCCCEEEE
Confidence 4556778899999999865554 23556677777777764 6899974 43 2 46778888999999999
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=89.32 E-value=1.7 Score=40.65 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~ 150 (359)
.++.|.+-+.++++.+.+.|++-|.+.-|+|= +++.+-.++++.+.+.+++ ++|+=++. +++..-++..+-.|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~~~~l~~H~-Hnd~Gla~AN~laA~ 219 (293)
T 3ewb_X 144 ATRSDRAFLIEAVQTAIDAGATVINIPDTVGY---TNPTEFGQLFQDLRREIKQFDDIIFASHC-HDDLGMATANALAAI 219 (293)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCEEEEECSSSC---CCHHHHHHHHHHHHHHCTTGGGSEEEEEC-BCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHHhcCCccCceEEEEe-CCCcChHHHHHHHHH
Confidence 46799999999999999999999999999996 8999999999999988865 35665544 567788999999999
Q ss_pred hCCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 151 AVGMHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 151 ~~Gadav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
++||+.+=..---+. ..+-|+++..++.
T Consensus 220 ~aGa~~vd~sv~GlGeraGN~~~E~vv~~L~~ 251 (293)
T 3ewb_X 220 ENGARRVEGTINGIGERAGNTALEEVAVALHI 251 (293)
T ss_dssp HTTCCEEEEBGGGCCTTTCBCBHHHHHHHHHH
T ss_pred HhCCCEEEeeccccccccccHhHHHHHHHHHh
Confidence 999998866543332 2455666666654
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=89.18 E-value=3.3 Score=37.68 Aligned_cols=109 Identities=8% Similarity=-0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHH--------HHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH-h
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF-A 151 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er--------~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~-~ 151 (359)
.+.+++.+-+.||+..++.++..-+.....++. ..+.+. ++...++...++.+--...+++++..+++. +
T Consensus 37 ~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~-~~~~p~r~~~~~~~p~~~~~~~~~el~~~~~~ 115 (307)
T 2f6k_A 37 PQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDGKSL-AQQYPDQLGYLASLPIPYELDAVKTVQQALDQ 115 (307)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHHHHH-HHHCTTTEEEEECCCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccCCHHHHHHHHHHHHHHHHHH-HHhCccceeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 355666677899999888776432222222222 223333 333455654443343245677888777765 5
Q ss_pred CCCCEEEEcCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 152 VGMHAALHINPYYG-KTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 152 ~Gadav~v~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
.|+.++.+-+.+.. ..+.+.+...|+...+. +||+++--
T Consensus 116 ~g~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~ 156 (307)
T 2f6k_A 116 DGALGVTVPTNSRGLYFGSPVLERVYQELDARQAIVALHPN 156 (307)
T ss_dssp SCCSEEEEESEETTEETTCGGGHHHHHHHHTTTCEEEEECC
T ss_pred cCCcEEEEeccCCCCCCCcHhHHHHHHHHHHcCCeEEECCC
Confidence 79999966544322 24445677777776665 79998764
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=89.14 E-value=2.7 Score=38.75 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~ 122 (359)
++++.++.+.++|++|+++. -|..+|..++.+.+.+
T Consensus 111 g~e~f~~~~~~aGvdgvii~-------Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 111 GIDEFYTKAQAAGVDSVLIA-------DVPVEESAPFSKAAKA 146 (267)
T ss_dssp CHHHHHHHHHHHTCCEEEET-------TSCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEeC-------CCCHhhHHHHHHHHHH
Confidence 34667777777777777663 4444555555554443
|
| >1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ... | Back alignment and structure |
|---|
Probab=88.96 E-value=5.1 Score=40.01 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=71.4
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNST 139 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st 139 (359)
-+-|-+++.--+.-+.+.+.+-.+...|+|=+ =.- .-+....+.++||...+-.+++ .++.+.-..+++++.++
T Consensus 169 llgtiiKPklGLs~~~~a~~~ye~~~GGlDfi-KDDE~l~~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~ 247 (477)
T 1wdd_A 169 LLGCTIKPKLGLSAKNYGRACYECLRGGLDFT-KDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTC 247 (477)
T ss_dssp EEECBCSSSSCCCHHHHHHHHHHHHHTTCSEE-ECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSH
T ss_pred eEEeecCccccCCHHHHHHHHHHHHhcCCcee-eCCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecCcCCCCH
Confidence 34455566655899999999999999999933 222 3345667889999875544444 34444445679999889
Q ss_pred HHHHHHHHHHHhCCCCEEEEc
Q 018253 140 REAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~ 160 (359)
+|.+++++.++++|+.++|+-
T Consensus 248 ~eM~~Ra~~a~e~G~~~~mvd 268 (477)
T 1wdd_A 248 EEMIKRAVFARELGVPIVMHD 268 (477)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEe
Confidence 999999999999999999986
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=88.92 E-value=2 Score=39.76 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH--------HHHHHHHHHHHh
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST--------REAIHATEQGFA 151 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st--------~~ai~la~~a~~ 151 (359)
.++++++++-+.|.+.|=+.-.|-+ |+.++|.++++.+.+ ...|+.-+|.-+. .+-|++++..-+
T Consensus 111 ~~~~yl~~~k~lGF~~IEISdGti~---l~~~~~~~lI~~a~~----~f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLe 183 (276)
T 1u83_A 111 KVNEFHRYCTYFGCEYIEISNGTLP---MTNKEKAAYIADFSD----EFLVLSEVGSKDAELASRQSSEEWLEYIVEDME 183 (276)
T ss_dssp CHHHHHHHHHHTTCSEEEECCSSSC---CCHHHHHHHHHHHTT----TSEEEEECSCCC------CCSTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCccc---CCHHHHHHHHHHHHh----hcEEeeeccccCccccCCCCHHHHHHHHHHHHH
Confidence 6778888888888888877655544 899999999986544 3678887766444 789999999999
Q ss_pred CCCCEEEEcC
Q 018253 152 VGMHAALHIN 161 (359)
Q Consensus 152 ~Gadav~v~p 161 (359)
+||+.||+-.
T Consensus 184 AGA~~ViiEa 193 (276)
T 1u83_A 184 AGAEKVITEA 193 (276)
T ss_dssp HTEEEEEEC-
T ss_pred CCCcEEEEee
Confidence 9999999864
|
| >3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum} | Back alignment and structure |
|---|
Probab=88.92 E-value=4.7 Score=39.79 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=71.9
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~ 137 (359)
++-.++ ++.--+.-+.+.+.+-.+...|+|=+====.-+....+.++||...+-.+++. ++.+.-..++++ .
T Consensus 163 l~gtii---KPklGLs~~~~a~~~ye~~~GGlDfiKDDE~~~~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT-~ 238 (432)
T 3nwr_A 163 MIGTII---KPNVGLSAAETAALVRELCEAGVDFIKDDEVCANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNIT-D 238 (432)
T ss_dssp EEEEEC---SSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSCTTSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-S
T ss_pred eEEEee---ccccCCCHHHHHHHHHHHHhcCCceeECCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcceEEeecC-C
Confidence 444444 44544889999999999999999954222244567788999998877666654 444444577999 6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc
Q 018253 138 STREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~ 160 (359)
+++|.+++++.+.+.|++++|+-
T Consensus 239 ~~~em~~Ra~~a~e~G~~~~mvd 261 (432)
T 3nwr_A 239 DLDAMRRHAELVEREGGSCVMAS 261 (432)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 89999999999999999999886
|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
Probab=88.89 E-value=4.4 Score=38.31 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCC------------------------------HHHHHHHHHHHHhCCCCEEEEcC
Q 018253 112 EHIMLIGHTVNCFGASVKVIGNTGSNS------------------------------TREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 112 Er~~li~~~v~~~~grvpViagvg~~s------------------------------t~~ai~la~~a~~~Gadav~v~p 161 (359)
...+.++.+.+..++++|+|..+++.= ++..++.++...++|||++++..
T Consensus 132 ~v~eai~~l~~~l~~~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D 211 (348)
T 4ay7_A 132 VVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIAD 211 (348)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeec
Confidence 344556666677777888887776531 34456667777789999999987
Q ss_pred CCCCC--CCHHHH----HHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCeEEEeccCchh-hHhhhhCCce
Q 018253 162 PYYGK--TSLEGL----ISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGND-RVEHYTGNGI 232 (359)
Q Consensus 162 P~y~~--~s~~~l----~~yf~~Ia~a~-PiiiYn~P~~tg~~ls~e~l~~La~~-pnivGiK~ss~d~-~l~~~~~~~~ 232 (359)
+.-.. .|++.. ..|+++|.+.. .+.++++.+. ....+..+++. .+++++=....+. ..++..++++
T Consensus 212 ~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~iih~~g~-----~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~g~~~ 286 (348)
T 4ay7_A 212 PVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVLHICGN-----VNPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRA 286 (348)
T ss_dssp GGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEEEEECCSC-----CHHHHHHHHTSCCSEEECCGGGCCHHHHHHHHTTSS
T ss_pred cccccccCCHHHHHHHhhHHHHHHHhhccCCcEEEecCC-----cHHHHHHHHHhccccccccchhhHHHHHHHHhCCCE
Confidence 75432 566554 44567777762 3334454432 13467777765 4677765544443 3445556777
Q ss_pred EEEecCCc
Q 018253 233 VVWSGNDD 240 (359)
Q Consensus 233 ~v~~G~d~ 240 (359)
.+..|.|.
T Consensus 287 ~l~Gnldp 294 (348)
T 4ay7_A 287 RLVGNVSS 294 (348)
T ss_dssp EEEEEECC
T ss_pred EEEcCCCC
Confidence 66655543
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=88.87 E-value=15 Score=35.24 Aligned_cols=169 Identities=12% Similarity=0.015 Sum_probs=92.5
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHH
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~a 142 (359)
+|.+..|++..++ .++...+.+.| |+.+..+ .+|.+|..+.++. +. ..+.+.++. ..++
T Consensus 43 ~Pii~ApM~~vte------~~lA~A~a~~G--g~gvi~~-----~~s~ee~~~~i~~----~~--~~~~~~~g~--~~~~ 101 (361)
T 3r2g_A 43 LPVISANMDTITE------SNMANFMHSKG--AMGALHR-----FMTIEENIQEFKK----CK--GPVFVSVGC--TENE 101 (361)
T ss_dssp SCEEECCSTTTCS------HHHHHHHHHTT--CEEBCCS-----CSCHHHHHHHHHT----CC--SCCBEEECS--SHHH
T ss_pred CCEEECCCCCchH------HHHHHHHHHcC--CCEEEeC-----CCCHHHHHHHHhh----cc--eEEEEEcCC--CHHH
Confidence 4556667744443 45555666777 4444443 2788887765542 22 123333332 3678
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccC
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV 219 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss 219 (359)
.++++.+.++|+|.+.+-.+.-+ + +.+.+..+.|.+. .||+.=| ..+++...++.+. .+-+||.+.
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~--~-~~~~e~I~~ir~~~~~~~Vi~G~-------V~T~e~A~~a~~a-GaD~I~Vg~ 170 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH--A-KYVGKTLKSLRQLLGSRCIMAGN-------VATYAGADYLASC-GADIIKAGI 170 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS--S-HHHHHHHHHHHHHHTTCEEEEEE-------ECSHHHHHHHHHT-TCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC--c-HhHHHHHHHHHHhcCCCeEEEcC-------cCCHHHHHHHHHc-CCCEEEEcC
Confidence 89999999999997776444321 2 3444555555543 5777644 3567877777653 344444332
Q ss_pred ch-----h------------hHhhhhCC-ceEEEe--cCC-chhhhhhhhcCCceeecccccccHH
Q 018253 220 GN-----D------------RVEHYTGN-GIVVWS--GND-DQCHDARWNHGATGVISVTSNLVPG 264 (359)
Q Consensus 220 ~d-----~------------~l~~~~~~-~~~v~~--G~d-~~~~~~~l~~Ga~G~is~~an~~P~ 264 (359)
+. . .+.+.... . .|+. |-. ..-...++.+|+++++.|...+..+
T Consensus 171 g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~ 235 (361)
T 3r2g_A 171 GGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSA 235 (361)
T ss_dssp SSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBT
T ss_pred CCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCc
Confidence 11 1 11221111 1 3443 321 1222345889999999887766543
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=1.1 Score=43.21 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEEccCcc---------CcCC---------CCH----HHHHHHHHHHHHhhCCCcEEEE
Q 018253 76 FDLEAYDDLVNMQIVNG-AEGMIVGGTTG---------EGQL---------MSW----DEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 76 ID~~~l~~li~~li~~G-v~Gl~v~GstG---------E~~~---------LT~----~Er~~li~~~v~~~~grvpVia 132 (359)
+|.+.+.+.++.+.+.| +++|.+..|+| +-.. ||- .--.+++..+.+. .+++|||+
T Consensus 204 ~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~-~~~ipII~ 282 (354)
T 4ef8_A 204 FDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRR-CPGKLIFG 282 (354)
T ss_dssp CSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHh-CCCCCEEE
Confidence 46788888998888998 99999876663 1111 221 2235566666665 45799997
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGK 166 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~ 166 (359)
.=|=.+.+++.+... +|||+|++-...++.
T Consensus 283 ~GGI~s~~da~~~l~----aGAd~V~vgra~l~~ 312 (354)
T 4ef8_A 283 CGGVYTGEDAFLHVL----AGASMVQVGTALQEE 312 (354)
T ss_dssp ESCCCSHHHHHHHHH----HTEEEEEECHHHHHH
T ss_pred ECCcCCHHHHHHHHH----cCCCEEEEhHHHHHh
Confidence 555556777777753 799999998876543
|
| >4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A | Back alignment and structure |
|---|
Probab=88.83 E-value=4.1 Score=40.85 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=72.5
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+.+-.+...|+|=+====.-+....+..+||...+-.+++. ++.+.-..+++++.+.+|
T Consensus 179 lgtiiKPklGLs~~~~a~~~ye~~~GGlDfIKDDE~l~~Qpf~p~~eRv~~v~eai~rA~~eTGe~K~~~~NiTa~~~~e 258 (493)
T 4f0h_A 179 LGXTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFVMEAVNKAAAATGEVKGHYLNVTAATMEE 258 (493)
T ss_dssp EEEBCSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHH
T ss_pred EEEeeccccCCCHHHHHHHHHHHHhcCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHhHCCcceEEeecCCCCHHH
Confidence 3344455445889999999999999999954211234467788999999887777664 333444678999888999
Q ss_pred HHHHHHHHHhCCCCEEEEc
Q 018253 142 AIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~ 160 (359)
.+++++.+.+.|+.++|+-
T Consensus 259 M~~Ra~~a~e~G~~~vmvd 277 (493)
T 4f0h_A 259 MYARAQLAKELGSVIIMID 277 (493)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEe
Confidence 9999999999999999885
|
| >3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=88.83 E-value=3.9 Score=39.69 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=72.2
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~ 137 (359)
++-.++-| - -+.-+.+.+.+-.+...|+|=+====.-+....+.++||...+-.+++. ++.+.--.+++++
T Consensus 133 llgtiiKP-l---GLs~~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eR~~~~~eai~ra~~eTGe~k~y~~NiTa- 207 (378)
T 3qfw_A 133 LTASALKP-Q---GLSPAALASIAHQLALGGVDLIKDDHGLADQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISG- 207 (378)
T ss_dssp EEEEEECC-T---TSCHHHHHHHHHHHHHTTCSEEEECTTCSSCTTSCHHHHHHHHHHHHHHHHHHHTCCCEEECBCCS-
T ss_pred eeeeeccC-C---cCCHHHHHHHHHHHHhcCCCcccCCcCcCCCCcccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC-
Confidence 77777777 2 4899999999999999999954222234567788999998876666554 4444334557887
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc
Q 018253 138 STREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~ 160 (359)
+++|.+++++.|+++|+.++|+-
T Consensus 208 ~~~em~~ra~~a~e~G~~~~mvd 230 (378)
T 3qfw_A 208 TLDDMRRQLGVIRDEGIGAVLVA 230 (378)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 69999999999999999999985
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.74 E-value=3.5 Score=38.50 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=61.5
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCCHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNSTR 140 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~st~ 140 (359)
+-.+.++=| +.|.-..+.-...++..++.|++-|=+-=..|..-.=..++-.+-++.+++.+++. ++||.=++-.+.+
T Consensus 110 V~V~tVigF-P~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~e 188 (288)
T 3oa3_A 110 VGVTCVIGF-HEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTAD 188 (288)
T ss_dssp CEEEEEEST-TTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHH
T ss_pred CeEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHH
Confidence 334444445 34666667777777777778877765444444433334555555666666655443 6777766666777
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 018253 141 EAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~ 160 (359)
+-++.++.|.++|||.|=..
T Consensus 189 ei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 189 EIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp HHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHcCCCEEEcC
Confidence 77777777778888766554
|
| >1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A | Back alignment and structure |
|---|
Probab=88.73 E-value=5.2 Score=40.08 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=71.5
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNST 139 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st 139 (359)
-+-|-+++.--+.-+.+.+.+-.+...|+|=+= .- .-+....+.++||...+-.+++ .++.+.-..+++++.+.
T Consensus 178 llgtiiKPklGLsp~~~a~~~ye~~~GGlDfiK-DDE~l~~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~ 256 (493)
T 1bwv_A 178 LLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVK-DDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATM 256 (493)
T ss_dssp EEECBCSSSSCCCHHHHHHHHHHHHHHTCSEEE-CCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSH
T ss_pred eEEeecCCccCCCHHHHHHHHHHHHhcCCCccc-CccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceeeccCCCCCH
Confidence 344555666558999999999999999999432 22 2345667889999875555544 34444445679999889
Q ss_pred HHHHHHHHHHHhCCCCEEEEc
Q 018253 140 REAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~ 160 (359)
+|.+++++.+.++|+.++|+-
T Consensus 257 ~eM~~Ra~~a~e~G~~~~mvd 277 (493)
T 1bwv_A 257 EEMYARANFAKELGSVIIMID 277 (493)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEe
Confidence 999999999999999999986
|
| >3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... | Back alignment and structure |
|---|
Probab=88.65 E-value=1.5 Score=42.75 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~ 150 (359)
.|..+.+--++-++.+.+.+.+|+.+.| +.|| +.+|+.++++.+.+..+...|.+. |+| +..+.++. .
T Consensus 203 QGg~~~dLR~~sa~~l~~~~~~GyaIGGlsvge----~~~~~~~~l~~~~~~LP~~kPRylmGvg--~P~~il~~----V 272 (386)
T 3bld_A 203 QGSVFENLRQQSADALAEIGFDGYAVGGLAGGE----GQDEMFRVLDFSVPMLPDDKPHYLMGVG--KPDDIVGA----V 272 (386)
T ss_dssp CCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSS----CHHHHHHHHHHHGGGSCTTSCEEETTCC--CHHHHHHH----H
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCeeEcCcccCC----CHHHHHHHHHHHHhhCCCCCcEEEeCCC--CHHHHHHH----H
Confidence 6778888888888999999999999999 8888 789999999999999887777654 777 56666654 4
Q ss_pred hCCCCEEEEcCCC
Q 018253 151 AVGMHAALHINPY 163 (359)
Q Consensus 151 ~~Gadav~v~pP~ 163 (359)
+.|+|-.=.+-|.
T Consensus 273 ~~GvDmFDcv~pt 285 (386)
T 3bld_A 273 ERGIDMFDCVLPT 285 (386)
T ss_dssp TTTCCEEC-----
T ss_pred HcCCCEEeCcHHH
Confidence 5899976555554
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=2.1 Score=40.09 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCc-CCCC-HHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-QLMS-WDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~-~~LT-~~Er~~li~~~v~~~~grvpViagv 134 (359)
..||+-..+=-|.+.|+ .|.+...++++.+++.|++-|=++| ||.-+ ...+ .+|..+++..+......++||.+-+
T Consensus 25 iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSIDT 104 (294)
T 2y5s_A 25 VMGILNATPDSFSDGGRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSIDT 104 (294)
T ss_dssp EEEEEECCC----------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEEEC
T ss_pred EEEEEeCCCCCCCCCCCcCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEC
Confidence 56777654444887775 5899999999999999999999999 65433 3345 4455555544433332256766544
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
.. .+ -++.|.++|++-+--+.-. . .+ +-+..+++. .|+++-+.
T Consensus 105 ~~--~~----Va~aAl~aGa~iINdVsg~--~--d~---~m~~~~a~~~~~vVlmh~ 148 (294)
T 2y5s_A 105 YK--PA----VMRAALAAGADLINDIWGF--R--QP---GAIDAVRDGNSGLCAMHM 148 (294)
T ss_dssp CC--HH----HHHHHHHHTCSEEEETTTT--C--ST---THHHHHSSSSCEEEEECC
T ss_pred CC--HH----HHHHHHHcCCCEEEECCCC--C--ch---HHHHHHHHhCCCEEEECC
Confidence 43 22 2333444488655444221 1 11 223434443 57777664
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=3.5 Score=37.91 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCCEEEEccCc-cCcCCCCHH--------HHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH-Hh
Q 018253 82 DDLVNMQIVNGAEGMIVGGTT-GEGQLMSWD--------EHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG-FA 151 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~Gst-GE~~~LT~~--------Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a-~~ 151 (359)
+.+++.+-+.||+..++.+++ |-......+ .-..+.+. ++..++|.--++++.-...+++++..+++ ++
T Consensus 41 ~~~l~~m~~~GV~~~v~~~~~p~~~~~~d~~~~~~~~~~~n~~~~~~-~~~~p~r~~~~~~v~p~~~~~~~~el~~~~~~ 119 (327)
T 2dvt_A 41 DTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRANDVLAEE-CAKRPDRFLAFAALPLQDPDAATEELQRCVND 119 (327)
T ss_dssp SHHHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHHHHHHH-HHHCTTTEEEEECCCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCcEEEEeCCCCcccccCChHHHHHHHHHHHHHHHHH-HhhCCCceEEEeecCcCCHHHHHHHHHHHHhc
Confidence 567777788999998887764 221111222 22233333 33345565445666655666778877777 46
Q ss_pred CCCCEEEEcCCCC------C-CCCHHHHHHHHHHHHhc-CCeEEEe
Q 018253 152 VGMHAALHINPYY------G-KTSLEGLISHFDSVLSM-GPTIIYN 189 (359)
Q Consensus 152 ~Gadav~v~pP~y------~-~~s~~~l~~yf~~Ia~a-~PiiiYn 189 (359)
.|+.++-+.+.++ . ..+.+.+...|+...+. +||+++-
T Consensus 120 ~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~ 165 (327)
T 2dvt_A 120 LGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHP 165 (327)
T ss_dssp TCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEEC
T ss_pred CCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECC
Confidence 7999997655443 1 23445677777776665 8999985
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.34 E-value=1.3 Score=40.87 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred HHHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 83 DLVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
.+.+.+.+.|++.+...|+ .|=+.-++. ..+++.+++.. .+ +|||++-|=.+.+++ ..|.++|||+|++-
T Consensus 136 ~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~---~~~L~~i~~~~-~~~vPVI~~GGI~tpsDA----a~AmeLGAdgVlVg 207 (268)
T 2htm_A 136 VLAKRLAALGTATVMPLAAPIGSGWGVRT---RALLELFAREK-ASLPPVVVDAGLGLPSHA----AEVMELGLDAVLVN 207 (268)
T ss_dssp HHHHHHHHHTCSCBEEBSSSTTTCCCSTT---HHHHHHHHHTT-TTSSCBEEESCCCSHHHH----HHHHHTTCCEEEES
T ss_pred HHHHHHHhcCCCEEEecCccCcCCcccCC---HHHHHHHHHhc-CCCCeEEEeCCCCCHHHH----HHHHHcCCCEEEEC
Confidence 3444555579999999775 454555544 33466666622 35 999997766566665 45667999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 018253 161 NPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~Ia 180 (359)
.=.....++..+.+-|..-.
T Consensus 208 SAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 208 TAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHHTSSSHHHHHHHHHHHH
T ss_pred hHHhCCCCHHHHHHHHHHHH
Confidence 76665556666666666543
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=88.32 E-value=2.3 Score=37.54 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...+.++.+.+.|++.|.+....+.+. ......++++.+.+.. ++||+++-+-.+.++ ++.+.++|||++++
T Consensus 34 ~~~~~a~~~~~~G~d~i~v~~~~~~~~--~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~----~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYEEEGADEIAILDITAAPE--GRATFIDSVKRVAEAV--SIPVLVGGGVRSLED----ATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTT--THHHHHHHHHHHHHHC--SSCEEEESSCCSHHH----HHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHcCCCEEEEEeCCcccc--CCcccHHHHHHHHHhc--CCCEEEECCCCCHHH----HHHHHHcCCCEEEE
Confidence 456678888899999998876555432 2334456666666655 589998776656544 45566689999998
Q ss_pred cCCCC
Q 018253 160 INPYY 164 (359)
Q Consensus 160 ~pP~y 164 (359)
..+.+
T Consensus 106 ~~~~~ 110 (253)
T 1h5y_A 106 NTAAV 110 (253)
T ss_dssp SHHHH
T ss_pred ChHHh
Confidence 75544
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.23 E-value=7.3 Score=35.44 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~ 158 (359)
++.+.++.+.++|++|+++. -++.+|..++++.+.++ | +.++.- .-+.+.+...+.++.+ .|.- ..
T Consensus 110 g~~~f~~~~~~aG~dgvii~-------dl~~ee~~~~~~~~~~~--g-l~~i~l~~p~t~~~rl~~ia~~a--~gfi-y~ 176 (262)
T 2ekc_A 110 GLEKFCRLSREKGIDGFIVP-------DLPPEEAEELKAVMKKY--V-LSFVPLGAPTSTRKRIKLICEAA--DEMT-YF 176 (262)
T ss_dssp CHHHHHHHHHHTTCCEEECT-------TCCHHHHHHHHHHHHHT--T-CEECCEECTTCCHHHHHHHHHHC--SSCE-EE
T ss_pred hHHHHHHHHHHcCCCEEEEC-------CCCHHHHHHHHHHHHHc--C-CcEEEEeCCCCCHHHHHHHHHhC--CCCE-EE
Confidence 44777888888888888875 35567777777666553 1 222221 1222333333444433 2332 22
Q ss_pred EcCC-CCCCCC--H-HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhcC
Q 018253 159 HINP-YYGKTS--L-EGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQS 209 (359)
Q Consensus 159 v~pP-~y~~~s--~-~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La~~ 209 (359)
+... .....+ . +.+.++.+.+.+. .|+.+ |..++ ++.+.++...
T Consensus 177 vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~v-------G~GI~t~e~~~~~~~g 227 (262)
T 2ekc_A 177 VSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVV-------GFGVSKKEHAREIGSF 227 (262)
T ss_dssp ESSCC---------CHHHHHHHHHHHHHCCSCEEE-------ESSCCSHHHHHHHHTT
T ss_pred EecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEE-------eCCCCCHHHHHHHHcC
Confidence 2222 222211 2 3455666666653 56654 55676 7888777654
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.18 E-value=3.3 Score=36.93 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+|.+.+.+..+.+.+.|+++|-.. || +..-.|. +.++.+.+.+++++||++.=|=.+.+++.++.+ +||
T Consensus 129 l~~~~~~~~a~~a~eaGad~I~ts--tg~~~gga~~----~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~----aGA 198 (225)
T 1mzh_A 129 LNEEEIKKAVEICIEAGADFIKTS--TGFAPRGTTL----EEVRLIKSSAKGRIKVKASGGIRDLETAISMIE----AGA 198 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECC--CSCSSSCCCH----HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH----TTC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEC--CCCCCCCCCH----HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH----hCc
Confidence 667778999999999999999433 22 1111343 344455566677999997545556777777774 899
Q ss_pred CEEEEc
Q 018253 155 HAALHI 160 (359)
Q Consensus 155 dav~v~ 160 (359)
|.+-+.
T Consensus 199 ~~iG~s 204 (225)
T 1mzh_A 199 DRIGTS 204 (225)
T ss_dssp SEEEES
T ss_pred hHHHHc
Confidence 965443
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=88.13 E-value=1.7 Score=37.60 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHCCCCEEEEcc--CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGG--TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~G--stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
...+.++.+...|+.-+++.| .+|...-+. .+.++...+.. ++|+|+..+..+.++..+.. +.|+|++
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~----~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~----~~G~~~~ 200 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAF----LAGADAA 200 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCC----HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHH----HHTCSEE
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCcccccc----HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHH----HcCcHHH
Confidence 345667777778888888877 556555554 34444444433 68999988777777766654 3699999
Q ss_pred EEcCCCCCC-CCHHHHHHHHH
Q 018253 158 LHINPYYGK-TSLEGLISHFD 177 (359)
Q Consensus 158 ~v~pP~y~~-~s~~~l~~yf~ 177 (359)
++..-.|.+ .+.+++.++.+
T Consensus 201 ~vg~a~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 201 LAASVFHFREIDVRELKEYLK 221 (237)
T ss_dssp EESHHHHTTSSCHHHHHHHHH
T ss_pred hhhHHHHcCCCCHHHHHHHHH
Confidence 999887654 57788877654
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=7.7 Score=35.65 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=62.0
Q ss_pred CCCCHHHHHH-HHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh-CCCCEEEEc--CCCC------CCCCHHHHHHH
Q 018253 106 QLMSWDEHIM-LIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA-VGMHAALHI--NPYY------GKTSLEGLISH 175 (359)
Q Consensus 106 ~~LT~~Er~~-li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~-~Gadav~v~--pP~y------~~~s~~~l~~y 175 (359)
...+.++..+ +++.+.+. ....|++++++..+.++..+.++.+++ .|+|++-+- .|.. +..+.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~ei 155 (311)
T 1ep3_A 77 QNPGLEVIMTEKLPWLNEN-FPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAAL 155 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHH-CTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhc-CCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHH
Confidence 4456555433 34443331 225799999999899999999999998 999988653 2322 11255666777
Q ss_pred HHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 176 FDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 176 f~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
.+++.+. .||++--.|..+ =..+...++.+
T Consensus 156 i~~v~~~~~~pv~vk~~~~~~---~~~~~a~~l~~ 187 (311)
T 1ep3_A 156 VKACKAVSKVPLYVKLSPNVT---DIVPIAKAVEA 187 (311)
T ss_dssp HHHHHHHCSSCEEEEECSCSS---CSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCChH---HHHHHHHHHHH
Confidence 7777665 588876544321 12344555544
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=3.7 Score=39.95 Aligned_cols=84 Identities=18% Similarity=0.069 Sum_probs=51.8
Q ss_pred CcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEEcC------CCCC-CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCC
Q 018253 127 SVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHIN------PYYG-KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQ 196 (359)
Q Consensus 127 rvpViag-vg~~st~~ai~la~~a~~~Gadav~v~p------P~y~-~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~ 196 (359)
+.++|+| ++-+|.+.+.++++.++++|+|++-... ||.+ .++.+++ ..+.++++. +|++- -
T Consensus 142 ~~~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl-~~L~~~~~~~Gl~~~t--e------ 212 (385)
T 3nvt_A 142 EPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGL-KILKRVSDEYGLGVIS--E------ 212 (385)
T ss_dssp SCEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHH-HHHHHHHHHHTCEEEE--E------
T ss_pred CeEEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHH-HHHHHHHHHcCCEEEE--e------
Confidence 3456777 6677999999999999999999886653 5433 3566655 455556654 45442 1
Q ss_pred CCCHHHHHHHhcCCCeEEEeccCch
Q 018253 197 DIPPRVIHTMAQSPNLAGVKECVGN 221 (359)
Q Consensus 197 ~ls~e~l~~La~~pnivGiK~ss~d 221 (359)
.++++.+..++++ +-.+|..+++
T Consensus 213 ~~d~~~~~~l~~~--vd~lkIgs~~ 235 (385)
T 3nvt_A 213 IVTPADIEVALDY--VDVIQIGARN 235 (385)
T ss_dssp CCSGGGHHHHTTT--CSEEEECGGG
T ss_pred cCCHHHHHHHHhh--CCEEEECccc
Confidence 1333344444443 4456666655
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=87.74 E-value=12 Score=35.76 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
-|.+.+.+.++...+.|.+++=+-... +.++=.++++.+++.++.++++.+-+ ++.+.++++++++..++.|+
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~------~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 217 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA------DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY 217 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS------CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe
Confidence 356788888899999999998775432 56666788888888888789998865 45689999999999999887
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh--cCCCeEEEeccC
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA--QSPNLAGVKECV 219 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La--~~pnivGiK~ss 219 (359)
++--|+. + .+.+++|.+. .||+.=. .-.+++.+.++. ..-.++.+|-+-
T Consensus 218 ---~iE~P~~---~----~~~~~~l~~~~~iPI~~de------~i~~~~~~~~~i~~~~~d~v~ik~~~ 270 (379)
T 2rdx_A 218 ---ILEQPCR---S----YEECQQVRRVADQPMKLDE------CVTGLHMAQRIVADRGAEICCLKISN 270 (379)
T ss_dssp ---EEECCSS---S----HHHHHHHHTTCCSCEEECT------TCCSHHHHHHHHHHTCCSEEEEETTT
T ss_pred ---EEeCCcC---C----HHHHHHHHhhCCCCEEEeC------CcCCHHHHHHHHHcCCCCEEEEeccc
Confidence 4455653 2 5566777765 5766532 235688888875 357899999764
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=87.74 E-value=1.3 Score=40.67 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
++...+.|++.++. .|.+|....++..+ .++.+.+.. ++||+++-|=.+.+++ +.+.++|||+|++..-.
T Consensus 140 a~~~~~~gad~v~~~~~~~Gt~~~~~~~~---~l~~i~~~~--~iPviv~gGI~t~eda----~~~~~~GAdgViVGSAi 210 (264)
T 1xm3_A 140 ARKLEELGVHAIMPGASPIGSGQGILNPL---NLSFIIEQA--KVPVIVDAGIGSPKDA----AYAMELGADGVLLNTAV 210 (264)
T ss_dssp HHHHHHHTCSCBEECSSSTTCCCCCSCHH---HHHHHHHHC--SSCBEEESCCCSHHHH----HHHHHTTCSEEEESHHH
T ss_pred HHHHHHhCCCEEEECCcccCCCCCCCCHH---HHHHHHhcC--CCCEEEEeCCCCHHHH----HHHHHcCCCEEEEcHHH
Confidence 44455667777655 44566554454333 555555533 7899987665455654 44456999999999865
Q ss_pred CCCCCH-HHHHHHHHHH
Q 018253 164 YGKTSL-EGLISHFDSV 179 (359)
Q Consensus 164 y~~~s~-~~l~~yf~~I 179 (359)
....+. +.+.++.+.+
T Consensus 211 ~~a~dp~~~~~~l~~~v 227 (264)
T 1xm3_A 211 SGADDPVKMARAMKLAV 227 (264)
T ss_dssp HTSSSHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 554554 4445555554
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=87.71 E-value=1 Score=40.28 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCc--CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH-HhCC-CCEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEG--QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG-FAVG-MHAA 157 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~--~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a-~~~G-adav 157 (359)
..+++.+.+.|++.+++.+.+-++ .-.+ .++++.+.+.+ ++|||++=|-.+.+++.++.+.. +..| +|++
T Consensus 147 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~----~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv 220 (241)
T 1qo2_A 147 VSLLKRLKEYGLEEIVHTEIEKDGTLQEHD----FSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGV 220 (241)
T ss_dssp HHHHHHHHTTTCCEEEEEETTHHHHTCCCC----HHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHhCCCCEEEEEeecccccCCcCC----HHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEE
Confidence 344555667999999997754332 2233 34455555555 68999976665667777765542 1238 9999
Q ss_pred EEcCCCCC-CCCHHHHHHHH
Q 018253 158 LHINPYYG-KTSLEGLISHF 176 (359)
Q Consensus 158 ~v~pP~y~-~~s~~~l~~yf 176 (359)
++..-.|. +.+.+++.+|+
T Consensus 221 ~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 221 IVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp EECHHHHTTSSCHHHHHHHH
T ss_pred EeeHHHHcCCCCHHHHHHHh
Confidence 99987664 45778877764
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=87.68 E-value=3.6 Score=41.26 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=48.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...++.++++|++.+.+..+.|. .+.-.++++.+.+..+ .+||++|-.. +. +.++.+.++|||++.+.
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~-----~~~~~~~i~~ir~~~p-~~~Vi~g~v~-t~----e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGH-----SEGVLQRIRETRAAYP-HLEIIGGNVA-TA----EGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTT-----SHHHHHHHHHHHHHCT-TCCEEEEEEC-SH----HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhccCceEEecccccc-----chHHHHHHHHHHHHCC-CceEEEcccC-cH----HHHHHHHHhCCCEEEEC
Confidence 44566778899999999888763 2445677777777664 6899886322 22 45677888999999974
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=87.60 E-value=8.3 Score=34.75 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=79.4
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCC--
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSN-- 137 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~-- 137 (359)
++-...+.=| +.|.-..+.-..-++..++.|++-|=+-=.-|..-.=.+++-.+-++.+++.+++. ++||.=++-.
T Consensus 63 ~v~v~tVigF-P~G~~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~ 141 (231)
T 3ndo_A 63 GLAIAAVAGF-PSGKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLE 141 (231)
T ss_dssp TCEEEEEEST-TTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHH
T ss_pred CCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCC
Confidence 3444444445 36666677778888999999999987776776655556777777777777777653 6778877776
Q ss_pred --CHHHHHHHHHHHHhCCCCEEEEcCCCC--CCCCHHHHHHH
Q 018253 138 --STREAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISH 175 (359)
Q Consensus 138 --st~~ai~la~~a~~~Gadav~v~pP~y--~~~s~~~l~~y 175 (359)
+.++-++.++.+.++|||.|=...=|. ...+.+++..+
T Consensus 142 ~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm 183 (231)
T 3ndo_A 142 FSGEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIM 183 (231)
T ss_dssp HTCHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHH
Confidence 778888899999999999886665443 23454444433
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=87.59 E-value=1.1 Score=40.61 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=55.4
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
+|-.++|-+++.+.+++ +.++|+|.|.++||+|- |.+.-.++++.+.+ -++|++.=.++. +.+
T Consensus 15 ~~~~DPdk~~~~~~l~~----~~~~GtDaI~vGgs~gv----t~~~~~~~v~~ik~---~~~Piil~p~~~---~~~--- 77 (235)
T 3w01_A 15 IFKLDPAKHISDDDLDA----ICMSQTDAIMIGGTDDV----TEDNVIHLMSKIRR---YPLPLVLEISNI---ESV--- 77 (235)
T ss_dssp EEEECTTSCCCHHHHHH----HHTSSCSEEEECCSSCC----CHHHHHHHHHHHTT---SCSCEEEECCCS---TTC---
T ss_pred EEeECCCCcCCHHHHHH----HHHcCCCEEEECCcCCc----CHHHHHHHHHHhcC---cCCCEEEecCCH---HHh---
Confidence 44457777778777766 46899999999998886 88888888887776 478998877643 222
Q ss_pred HHHHhCCCCEEEEc
Q 018253 147 EQGFAVGMHAALHI 160 (359)
Q Consensus 147 ~~a~~~Gadav~v~ 160 (359)
..|+|++++.
T Consensus 78 ----~~gaD~il~p 87 (235)
T 3w01_A 78 ----MPGFDFYFVP 87 (235)
T ss_dssp ----CTTCSEEEEE
T ss_pred ----hcCCCEEEEc
Confidence 4599999875
|
| >2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A | Back alignment and structure |
|---|
Probab=87.57 E-value=5.4 Score=39.32 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=77.6
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNST 139 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st 139 (359)
-+-|-+++.--+.-+.+.+.+-.+...|+|=+ =.- .-+....+..+||...+-.+++ .++.+.-..+++++. .
T Consensus 154 l~gtiiKPklGLs~~~~a~~~ye~~~GGlDfi-KDDE~l~~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiTa~-~ 231 (430)
T 2d69_A 154 LTATVPKPKMGWSVEEYAEIAYELWSGGIDLL-KDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGP-V 231 (430)
T ss_dssp EEEECCSSSSCCCHHHHHHHHHHHHHTTCSEE-ECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCSS-H
T ss_pred eEEeecCCccCCCHHHHHHHHHHHHhCCCcEe-ECCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCccEEEeecCCC-H
Confidence 34445566555899999999999999999943 222 3456677889999876555544 344444456689886 9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDS 178 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~ 178 (359)
+|.+++++.+.++|+.++|+-+-.+.-..-..+.++.+.
T Consensus 232 ~em~~Ra~~a~e~G~~~~mvd~~~~G~~a~~~l~~~~r~ 270 (430)
T 2d69_A 232 NIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTED 270 (430)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEeeccChHHHHHHHHHhhc
Confidence 999999999999999999987322222223455555544
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.48 E-value=0.77 Score=43.63 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred cCCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCC-HHHHHHHH---HHHHHhhCCCcEEE
Q 018253 58 KALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMS-WDEHIMLI---GHTVNCFGASVKVI 131 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT-~~Er~~li---~~~v~~~~grvpVi 131 (359)
+..||+-..+=-|.+.|+ .|.+...++++.+++.|++-|=++| ||.-+...+ .||..+++ +.+.+.. .++||-
T Consensus 43 ~vMGIlNvTPDSFsdgg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~-~~vpIS 121 (318)
T 2vp8_A 43 LIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY-PDQLIS 121 (318)
T ss_dssp EEEEEEC--------------CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHS-TTCEEE
T ss_pred EEEEEEeCCCCcccCCCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC-CCCeEE
Confidence 355665543333877775 6889999999999999999999998 442223455 55555664 3333322 156765
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+-+. ..+ -++.|.++|+|-+--+.-. . .+ +-+..+++. .|+++-+.
T Consensus 122 IDT~--~~~----VaeaAl~aGa~iINDVsg~--~--d~---~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 122 VDTW--RAQ----VAKAACAAGADLINDTWGG--V--DP---AMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp EECS--CHH----HHHHHHHHTCCEEEETTSS--S--ST---THHHHHHHHTCEEEEECC
T ss_pred EeCC--CHH----HHHHHHHhCCCEEEECCCC--C--ch---HHHHHHHHhCCCEEEECC
Confidence 5443 332 3344445599855444322 1 22 334445554 78888775
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=13 Score=34.00 Aligned_cols=163 Identities=17% Similarity=0.086 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV--iagv--g~~st~~ai~la~~a 149 (359)
.-..+.++++++...+.|+.++++.-+. +..+.+...+ .++| ++|. |..+++.-+.-++.|
T Consensus 55 ~~t~~~I~~lc~eA~~~~~aaVCV~p~~--------------V~~a~~~L~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~A 120 (260)
T 3r12_A 55 FATPDDIKKLCLEARENRFHGVCVNPCY--------------VKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFA 120 (260)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEECGGG--------------HHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEECHHH--------------HHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999986542 2333343333 3454 3353 556788888899999
Q ss_pred HhCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCe-EEEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 150 FAVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPT-IIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 150 ~~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a---~Pi-iiYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
.+.|||.+-++.++- . .-+.+.+.+-.++|.++ .|+ +|+. |+ .|+.+.+.+.++ .-..--||-|+|
T Consensus 121 i~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlE----t~-~Lt~eei~~A~~ia~eaGADfVKTSTG 195 (260)
T 3r12_A 121 VESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIE----TC-YLDTEEKIAACVISKLAGAHFVKTSTG 195 (260)
T ss_dssp HHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECC----GG-GCCHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred HHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEe----CC-CCCHHHHHHHHHHHHHhCcCEEEcCCC
Confidence 999999997776653 2 24667788888888765 232 2332 23 578887776553 356667899876
Q ss_pred ---------hhh-HhhhhCCceEE--EecCC--chhhhhhhhcCCc--eeecc
Q 018253 221 ---------NDR-VEHYTGNGIVV--WSGND--DQCHDARWNHGAT--GVISV 257 (359)
Q Consensus 221 ---------d~~-l~~~~~~~~~v--~~G~d--~~~~~~~l~~Ga~--G~is~ 257 (359)
|.+ +++..++++.| -.|-- +.++ .++.+|++ |.-++
T Consensus 196 f~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al-~mi~aGA~RiGtS~g 247 (260)
T 3r12_A 196 FGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAV-KMIMYGADRIGTSSG 247 (260)
T ss_dssp SSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHH-HHHHTTCSEEEESCH
T ss_pred CCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHH-HHHHcCCceeecchH
Confidence 223 33444554444 33332 2233 45788998 76544
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.42 E-value=1 Score=41.83 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCceEE--eeecCCC-C-CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLIT--AIKTPYL-P-DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~--al~TPF~-~-dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv 134 (359)
-.|+-+ .+.|-|. + .+..|.+.+.++++.+.+.|++.|.+.=|.|- +++++..++++.+.+.++ .+|+-++.
T Consensus 131 ~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~---~~P~~~~~lv~~l~~~~~-~~~l~~H~ 206 (295)
T 1ydn_A 131 NDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR---GTPDTVAAMLDAVLAIAP-AHSLAGHY 206 (295)
T ss_dssp HTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSC---CCHHHHHHHHHHHHTTSC-GGGEEEEE
T ss_pred HcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCC---cCHHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 456443 3555553 2 35789999999999999999999999988885 899999999999988764 47777765
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcC------CCC----CCCCHHHHHHHHH
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHIN------PYY----GKTSLEGLISHFD 177 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~p------P~y----~~~s~~~l~~yf~ 177 (359)
+++..-+++.+..|.++|++.+=+.- ||. ...+-++++.+++
T Consensus 207 -Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~ 258 (295)
T 1ydn_A 207 -HDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLH 258 (295)
T ss_dssp -BCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHH
Confidence 33445666777888899999886642 332 1244566666655
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.38 E-value=3.3 Score=38.49 Aligned_cols=108 Identities=8% Similarity=0.008 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCC-CHHH--------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH-h
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDE--------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF-A 151 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~L-T~~E--------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~-~ 151 (359)
+.+++.+-+.||+..++.++.+-+... ..++ -..+.+ +++..++|.--++++--...+++++..+++. +
T Consensus 57 ~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~p~r~~~~~~l~~~~~~~a~~el~~~~~~ 135 (336)
T 2wm1_A 57 EVRIREMDQKGVTVQALSTVPVMFSYWAKPEDTLNLCQLLNNDLAS-TVVSYPRRFVGLGTLPMQAPELAVKEMERCVKE 135 (336)
T ss_dssp HHHHHHHHHHTCCEEEEECCGGGGCTTSCHHHHHHHHHHHHHHHHH-HHHHSTTTEEEEECCCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEECCCchhhcccCCHHHHHHHHHHHHHHHHH-HHHhccCceeEEEeCCCcCHHHHHHHHHHHHHc
Confidence 455566667899998888765432222 2322 122232 3333456655555565556667888777776 6
Q ss_pred CCCCEEEEcCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 152 VGMHAALHINPYYG-KTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 152 ~Gadav~v~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
.|+.++-+.+-+.. ..+.+.+...|+.+.+. +||+++-.
T Consensus 136 ~g~~Gv~l~~~~~~~~l~d~~~~~~~~~~~e~~lpv~iH~~ 176 (336)
T 2wm1_A 136 LGFPGVQIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPW 176 (336)
T ss_dssp SCCSEEEEESEETTEETTCGGGHHHHHHHHHHTCEEEEECC
T ss_pred cCCeEEEECCcCCCCCCCCccHHHHHHHHHHcCCEEEECCC
Confidence 79999976543221 23456678888887776 89998854
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=87.38 E-value=3.9 Score=41.13 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+.++.++++|++.+.+..+.|- .+.-.++++.+.+..+ .+||++|--. +.+.++.+.++|+|++.+
T Consensus 258 ~era~aLveaGvd~I~Id~a~g~-----~~~v~~~i~~i~~~~~-~~~vi~g~v~-----t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAHGH-----SQGVIDKVKEVRAKYP-SLNIIAGNVA-----TAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTT-----SHHHHHHHHHHHHHCT-TSEEEEEEEC-----SHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhhccceEEecccccc-----hhhhhhHHHHHHHhCC-CceEEeeeec-----cHHHHHHHHHhCCCEEEE
Confidence 44477889999999998877652 2334557777777664 5788885322 345578888899999987
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=87.34 E-value=3.1 Score=39.10 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.+.++.+++.|++++.+.+. + . .++++.+.+. .++|+..+. +. +.++.+.+.|+|++.+.
T Consensus 85 ~~~~~~~~~~~g~d~V~~~~g--~----p----~~~~~~l~~~---gi~vi~~v~--t~----~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 85 YAEYRAAIIEAGIRVVETAGN--D----P----GEHIAEFRRH---GVKVIHKCT--AV----RHALKAERLGVDAVSID 145 (328)
T ss_dssp HHHHHHHHHHTTCCEEEEEES--C----C----HHHHHHHHHT---TCEEEEEES--SH----HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCC--C----c----HHHHHHHHHc---CCCEEeeCC--CH----HHHHHHHHcCCCEEEEE
Confidence 567888889999999987653 2 2 2344444442 578887774 33 44567888999999997
Q ss_pred CCCCCCC-C--HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHh
Q 018253 161 NPYYGKT-S--LEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMA 207 (359)
Q Consensus 161 pP~y~~~-s--~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La 207 (359)
.+..... . ...-.+.+.++.+. .||+.= | .| +++.+.+..
T Consensus 146 g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaa------G-GI~~~~~v~~al 191 (328)
T 2gjl_A 146 GFECAGHPGEDDIPGLVLLPAAANRLRVPIIAS------G-GFADGRGLVAAL 191 (328)
T ss_dssp CTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEE------S-SCCSHHHHHHHH
T ss_pred CCCCCcCCCCccccHHHHHHHHHHhcCCCEEEE------C-CCCCHHHHHHHH
Confidence 6543211 1 01234666777765 576543 2 35 566676654
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=87.20 E-value=2.5 Score=37.81 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC-CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~-~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.|+..+.+.++.+.+.|++-+-+--.-|.|. .+|.-. ++++...+.. +.|+.+..--++.+ ++.+.+.++||
T Consensus 14 ~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~--~~v~~lr~~~--~~~~~vhlmv~dp~---~~i~~~~~aGa 86 (230)
T 1tqj_A 14 ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGP--LIVDAIRPLT--KKTLDVHLMIVEPE---KYVEDFAKAGA 86 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCH--HHHHHHGGGC--CSEEEEEEESSSGG---GTHHHHHHHTC
T ss_pred cCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhH--HHHHHHHhhc--CCcEEEEEEccCHH---HHHHHHHHcCC
Confidence 4578889999999999999875555566654 555533 6666666554 45776655445543 36688888999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhcCCCeE----------EEeccCch-
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQSPNLA----------GVKECVGN- 221 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~~pniv----------GiK~ss~d- 221 (359)
|++.+..=.. . + +...+..+.+.+. . ..+.- +|.. +.+.++.+.+....+ |-|.....
T Consensus 87 dgv~vh~e~~-~-~-~~~~~~~~~i~~~g~~~gv~~-~p~t-----~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~ 157 (230)
T 1tqj_A 87 DIISVHVEHN-A-S-PHLHRTLCQIRELGKKAGAVL-NPST-----PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVL 157 (230)
T ss_dssp SEEEEECSTT-T-C-TTHHHHHHHHHHTTCEEEEEE-CTTC-----CGGGGTTTGGGCSEEEEESSCC----CCCCGGGH
T ss_pred CEEEECcccc-c-c-hhHHHHHHHHHHcCCcEEEEE-eCCC-----cHHHHHHHHhcCCEEEEEEeccccCCccCcHHHH
Confidence 9997762100 1 1 3455666666554 2 22222 4431 123344443222233 32211111
Q ss_pred h---hHhhhh-----CCceEEEecCCchhhhhhhhcCCceeecccccc
Q 018253 222 D---RVEHYT-----GNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 222 ~---~l~~~~-----~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
. ++++.. +..+.+-.|-...-......+|++|++.|.+-+
T Consensus 158 ~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~ 205 (230)
T 1tqj_A 158 PKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVF 205 (230)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHH
Confidence 1 233333 334555556444344444677999999987644
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=87.12 E-value=4.1 Score=39.13 Aligned_cols=69 Identities=22% Similarity=0.116 Sum_probs=46.0
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCC-----CcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA-----SVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~g-----rvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+++.++++|++++.+.-+.|. .||.++..+.+ +.+++.+.. .+|+|....+. . .+.....+.|+
T Consensus 202 y~~~qi~aGad~i~ifDs~~~--~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~--~---~~l~~l~~~g~ 274 (368)
T 4exq_A 202 YLNAQIEAGAQAVMIFDTWGG--ALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGG--G---LWLEDLAATGV 274 (368)
T ss_dssp HHHHHHHHTCSEEEEEETTGG--GSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTC--G---GGHHHHHTSSC
T ss_pred HHHHHHHhCCCEEEEeCCccc--cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCc--H---HHHHHHHHhCC
Confidence 344467899999999888764 78988877764 344555554 48887655432 2 23344567899
Q ss_pred CEEEE
Q 018253 155 HAALH 159 (359)
Q Consensus 155 dav~v 159 (359)
|++.+
T Consensus 275 d~i~~ 279 (368)
T 4exq_A 275 DAVGL 279 (368)
T ss_dssp SEEEC
T ss_pred CEEee
Confidence 98764
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=1.1 Score=41.55 Aligned_cols=83 Identities=8% Similarity=-0.018 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEccCcc------CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIV-NGAEGMIVGGTTG------EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~-~Gv~Gl~v~GstG------E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
+.+.+.+.++.+.+ .|+++|-++-+.- -.+--+.+.-.++++.+.+.+ .+||++-+.. +..+..++++.+
T Consensus 109 ~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~--~~pv~vk~~~-~~~~~~~~a~~l 185 (311)
T 1ep3_A 109 EEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS--KVPLYVKLSP-NVTDIVPIAKAV 185 (311)
T ss_dssp SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC--SSCEEEEECS-CSSCSHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc--CCCEEEEECC-ChHHHHHHHHHH
Confidence 57889999988877 9999998764421 111124455577777777765 4789886652 223556778999
Q ss_pred HhCCCCEEEEcCC
Q 018253 150 FAVGMHAALHINP 162 (359)
Q Consensus 150 ~~~Gadav~v~pP 162 (359)
+++|+|++.+...
T Consensus 186 ~~~G~d~i~v~~~ 198 (311)
T 1ep3_A 186 EAAGADGLTMINT 198 (311)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 9999999999753
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=4.9 Score=38.30 Aligned_cols=125 Identities=6% Similarity=-0.048 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHH-------HHHCCCCEEEEccCc----------------cCcCCCCHHHHHH----HHHHHHHhhCCCc
Q 018253 76 FDLEAYDDLVNM-------QIVNGAEGMIVGGTT----------------GEGQLMSWDEHIM----LIGHTVNCFGASV 128 (359)
Q Consensus 76 ID~~~l~~li~~-------li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~----li~~~v~~~~grv 128 (359)
+..+.++++++. ..++|.|||=+.|.. .|+- =|.+.|.+ +++.+++.++.+.
T Consensus 133 mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yG-GslenR~rf~~eiv~aVr~avg~d~ 211 (343)
T 3kru_A 133 LSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYG-NSIENRARFLIEVIDEVRKNWPENK 211 (343)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTS-SSHHHHTHHHHHHHHHHHHTSCTTS
T ss_pred cCHHHHHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhc-cchHhHHHHHHHHHHHHHhcCCccC
Confidence 555555555554 456899999998753 2322 25667754 4555555566677
Q ss_pred EEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Q 018253 129 KVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGKT----SLEGLISHFDSVLSM--GPTIIYNVPSRTG 195 (359)
Q Consensus 129 pViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~----s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg 195 (359)
||.+=++ +.+.++++++++..+++ +|.+-+....+... .+..-..+.+.|.+. .||+.= |
T Consensus 212 pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~------G 284 (343)
T 3kru_A 212 PIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAV------G 284 (343)
T ss_dssp CEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEE------S
T ss_pred CeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCccccee------e
Confidence 8877433 34689999999999999 99998853322110 011123344445443 566542 3
Q ss_pred CCCCHHHHHHHhc
Q 018253 196 QDIPPRVIHTMAQ 208 (359)
Q Consensus 196 ~~ls~e~l~~La~ 208 (359)
---+++..+++.+
T Consensus 285 gi~t~e~Ae~~l~ 297 (343)
T 3kru_A 285 LITTQELAEEILS 297 (343)
T ss_dssp SCCCHHHHHHHHH
T ss_pred eeeHHHHHHHHHh
Confidence 2346777777653
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=87.05 E-value=1.7 Score=41.15 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=86.8
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGS 136 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~ 136 (359)
-.|+-+..-.| ..++.|.+-+.++++.+.+.|++-|.+.-|+|= +++.+-.++++.+.+.+++ ++|+=++. +
T Consensus 133 ~~g~~v~f~~~--d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~~~~i~~H~-H 206 (325)
T 3eeg_A 133 KVVHEVEFFCE--DAGRADQAFLARMVEAVIEAGADVVNIPDTTGY---MLPWQYGERIKYLMDNVSNIDKAILSAHC-H 206 (325)
T ss_dssp TTSSEEEEEEE--TGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSC---CCHHHHHHHHHHHHHHCSCGGGSEEEECB-C
T ss_pred HCCCEEEEEcc--ccccchHHHHHHHHHHHHhcCCCEEEecCccCC---cCHHHHHHHHHHHHHhCCCCCceEEEEEe-C
Confidence 45655544444 256899999999999999999999999999996 8999999999999988864 36665544 5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHHH
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~~ 178 (359)
++..-++..+-.|.++|++.+=..---+ ...+-++++..++.
T Consensus 207 nd~GlA~AN~laA~~aGa~~vd~tv~GlGer~GN~~lE~vv~~L~~ 252 (325)
T 3eeg_A 207 NDLGLATANSLAALQNGARQVECTINGIGERAGNTALEEVVMAMEC 252 (325)
T ss_dssp CTTSCHHHHHHHHHHHTCCEEEEBGGGCCSTTCCCBHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHh
Confidence 6778899999999999999986654333 23455666666654
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=86.94 E-value=1.6 Score=40.74 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p---------P~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
++.-++.++.... .|+.++++|+|++++-. |.-...|.++++.|-+.|++. .|+++=|.|. -
T Consensus 33 g~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-g 105 (281)
T 1oy0_A 33 GHKWAMLTAYDYS------TARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPF-G 105 (281)
T ss_dssp TCCEEEEECCSHH------HHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCT-T
T ss_pred CCcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCC-C
Confidence 4434566666533 46677789999998743 223345789999999999986 5888899994 4
Q ss_pred CCCCCHHHH----HHHhcCCCeEEEeccCch
Q 018253 195 GQDIPPRVI----HTMAQSPNLAGVKECVGN 221 (359)
Q Consensus 195 g~~ls~e~l----~~La~~pnivGiK~ss~d 221 (359)
++..+++.. .++.+--...|+|.+.+.
T Consensus 106 sy~~s~~~a~~na~rl~~eaGa~aVklEdg~ 136 (281)
T 1oy0_A 106 SYEAGPTAALAAATRFLKDGGAHAVKLEGGE 136 (281)
T ss_dssp SSTTCHHHHHHHHHHHHHTTCCSEEEEEBSG
T ss_pred cccCCHHHHHHHHHHHHHHhCCeEEEECCcH
Confidence 666777753 566666789999988775
|
| >2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A | Back alignment and structure |
|---|
Probab=86.91 E-value=6.2 Score=38.70 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=69.1
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~~ 141 (359)
-|-+++.--+.-+.+.+.+-.+...|+|=+ =.- .-+....+.++||...+-.+++ .++.+.-..++++ .+.+|
T Consensus 143 gtiiKPklGls~~~~a~~~ye~~~GGlDfi-KDDE~~~~qpf~p~~eR~~~v~eai~ra~~eTGe~k~~~~NiT-~~~~e 220 (413)
T 2oem_A 143 MSIFKGMIGRDLAYLTSELKKQALGGVDLV-KDDEILFDSELLPFEKRITEGKAALQEVYEQTGKRTLYAVNLT-GKTFA 220 (413)
T ss_dssp EEECCSCTTCCHHHHHHHHHHHHHTTCSEE-ECCTTCCCCSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCGGG
T ss_pred EeecCccccCCHHHHHHHHHHHHhCCCcee-eCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCcceeeCcCC-CCHHH
Confidence 344455555889999999999999999943 232 3456667899999875544444 3444444567998 59999
Q ss_pred HHHHHHHHHhCCCCEEEEc
Q 018253 142 AIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~ 160 (359)
.+++++.++++|+.++|+-
T Consensus 221 m~~Ra~~a~e~G~~~~mvd 239 (413)
T 2oem_A 221 LKDKAKRAAELGADVLLFN 239 (413)
T ss_dssp HHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEe
Confidence 9999999999999999986
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=13 Score=33.11 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=77.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcC---CCCHHHHHHHHHHHHHhhCCCc-EEEEe------cCCCC-------HHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQ---LMSWDEHIMLIGHTVNCFGASV-KVIGN------TGSNS-------TREAI 143 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~---~LT~~Er~~li~~~v~~~~grv-pViag------vg~~s-------t~~ai 143 (359)
+...++...+.|.+|+=+.....+.+ .++.++..++-+.+.+ .+=++ .+.++ .++.+ .+...
T Consensus 14 ~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~ 92 (287)
T 2x7v_A 14 FDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKK-HGIDWENAFCHSGYLINLASPKDDIWQKSVELLK 92 (287)
T ss_dssp GGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHH-HTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHH-cCCCcceeEEecccccccCCCCHHHHHHHHHHHH
Confidence 56677888899999998865433332 4566676666655444 33221 13332 22222 23455
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCH----HHHHHHHHHHHhc---CCeEEEeCCCCCC-CCCCHHHHHHHh-cC---CC
Q 018253 144 HATEQGFAVGMHAALHINPYYGKTSL----EGLISHFDSVLSM---GPTIIYNVPSRTG-QDIPPRVIHTMA-QS---PN 211 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~s~----~~l~~yf~~Ia~a---~PiiiYn~P~~tg-~~ls~e~l~~La-~~---pn 211 (359)
+.++.|+++|+..+.+.+.+....+. +.+.+.++++++. +.+.+-|.+.... ..-+++.+.+|. +. |+
T Consensus 93 ~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (287)
T 2x7v_A 93 KEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGYKLEQLKKIRDLVDQRDR 172 (287)
T ss_dssp HHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECSSHHHHHHHHHHCSCGGG
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCCCHHHHHHHHHhcCCCCC
Confidence 67788899999988776554433232 3456666777654 3567777664211 223788888877 34 55
Q ss_pred eE
Q 018253 212 LA 213 (359)
Q Consensus 212 iv 213 (359)
+.
T Consensus 173 vg 174 (287)
T 2x7v_A 173 VA 174 (287)
T ss_dssp EE
T ss_pred eE
Confidence 53
|
| >2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.72 E-value=2.5 Score=41.03 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEE-EEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpV-iagvg~~st~~ai~la~~a~ 150 (359)
.|..+.+--++-++.+.+.+.+|+.+.| +.|| +.+|+.++++.+.+..+...|. +.|+| +..+.++. .
T Consensus 196 QGg~~~dLR~~sa~~l~~~~~~GyaIGGlsvGe----~~~~~~~~l~~~~~~LP~~kPRyLmGvG--~P~~il~~----V 265 (381)
T 2ash_A 196 QGGIYPDLRRESALQLTSIGFDGYAIGGLSIGE----ERSLTLEMTEVTVEFLPEDKPRYFMGGG--SPELILEL----V 265 (381)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCSEEEECSCSSSS----CHHHHHHHHHHHHTTSCTTSCEEECSCC--CHHHHHHH----H
T ss_pred cCCCCHHHHHHHHHHHHhcCCceEEecCcccCC----CHHHHHHHHHHHHhhCCCCCcEEEcCCC--CHHHHHHH----H
Confidence 6778888888888999999999999999 7888 7899999999999988877785 55886 46665554 4
Q ss_pred hCCCCEEEEcCCC
Q 018253 151 AVGMHAALHINPY 163 (359)
Q Consensus 151 ~~Gadav~v~pP~ 163 (359)
+.|+|-.=.+.|.
T Consensus 266 ~~GvDmFDcv~Pt 278 (381)
T 2ash_A 266 DRGVDMFDSVFPT 278 (381)
T ss_dssp TTTCCEEEESHHH
T ss_pred HcCCCEEeCChhh
Confidence 5899977666553
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=86.71 E-value=8.1 Score=37.20 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=93.7
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+++..+...|-=|++- ..+|.+|..+.++.+.+. ++..|-++++.. .+..+.++.+.++|+|.+.+-..
T Consensus 61 ~lA~avA~aGGlg~i~-------~~~s~e~~~~~i~~vk~~--~~l~vga~vg~~--~~~~~~~~~lieaGvd~I~idta 129 (366)
T 4fo4_A 61 RLAIALAQEGGIGFIH-------KNMSIEQQAAQVHQVKIS--GGLRVGAAVGAA--PGNEERVKALVEAGVDVLLIDSS 129 (366)
T ss_dssp HHHHHHHHTTCEEEEC-------SSSCHHHHHHHHHHHHTT--TSCCCEEECCSC--TTCHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHcCCceEee-------cCCCHHHHHHHHHHHHhc--CceeEEEEeccC--hhHHHHHHHHHhCCCCEEEEeCC
Confidence 5666666666555552 147999999999887764 355566665532 35677788899999998877433
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc----C----------chh---
Q 018253 163 YYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC----V----------GND--- 222 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s----s----------~d~--- 222 (359)
.- ..+...+..+.+.+. .|++.-| ..+++...++.+. .+-+||.. + +.+
T Consensus 130 ~G---~~~~~~~~I~~ik~~~p~v~Vi~G~-------v~t~e~A~~a~~a-GAD~I~vG~gpGs~~~tr~~~g~g~p~~~ 198 (366)
T 4fo4_A 130 HG---HSEGVLQRIRETRAAYPHLEIIGGN-------VATAEGARALIEA-GVSAVKVGIGPGSICTTRIVTGVGVPQIT 198 (366)
T ss_dssp CT---TSHHHHHHHHHHHHHCTTCEEEEEE-------ECSHHHHHHHHHH-TCSEEEECSSCSTTBCHHHHHCCCCCHHH
T ss_pred CC---CCHHHHHHHHHHHHhcCCCceEeee-------eCCHHHHHHHHHc-CCCEEEEecCCCCCCCcccccCcccchHH
Confidence 21 124566677777665 4666643 4578888887643 22223331 0 001
Q ss_pred ---hHhhhh-CCceEEEe--cC-CchhhhhhhhcCCceeecccccccH
Q 018253 223 ---RVEHYT-GNGIVVWS--GN-DDQCHDARWNHGATGVISVTSNLVP 263 (359)
Q Consensus 223 ---~l~~~~-~~~~~v~~--G~-d~~~~~~~l~~Ga~G~is~~an~~P 263 (359)
.+.+.. ..++.|+. |- +..-+..++.+|++|++.+...+..
T Consensus 199 ~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t 246 (366)
T 4fo4_A 199 AIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT 246 (366)
T ss_dssp HHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcC
Confidence 111111 12455555 44 2222334589999999988776543
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=86.67 E-value=0.79 Score=40.02 Aligned_cols=67 Identities=12% Similarity=-0.081 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++.+.+.|++++.+.+..+ .+.-.++++.+.+. .+++++.+.+.. +..+.++.+.+.|+|.+.+.
T Consensus 68 ~~~~~~~~~Gad~v~v~~~~~------~~~~~~~~~~~~~~---g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 68 FESQLLFDAGADYVTVLGVTD------VLTIQSCIRAAKEA---GKQVVVDMICVD--DLPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH---TCEEEEECTTCS--SHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCC------hhHHHHHHHHHHHc---CCeEEEEecCCC--CHHHHHHHHHHcCCCEEEEc
Confidence 458888999999999866543 22335566555543 246665533322 24677788888999987554
|
| >2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.61 E-value=6.7 Score=38.59 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=69.6
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~ 140 (359)
+-|-+++.--+.-+.+.+.+-.+...|+|= +=.- .-+....+.++||...+-.+++ .++.+.-..++++ .+++
T Consensus 156 ~gtiiKPklGLs~~~~a~~~ye~~~GGlDf-iKDDE~l~~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiT-~~~~ 233 (425)
T 2zvi_A 156 LMSIFKGVIGRDLSDIKEQLRQQALGGVDL-IKDDEIFFETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLT-GRTA 233 (425)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHHHHTTCSE-EECCTTCCCSSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCGG
T ss_pred EEeecCCcccCCHHHHHHHHHHHHhCCCCe-eeCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceeeCcCC-CCHH
Confidence 334445555589999999999999999993 3232 4456678899999886655544 3444444567998 5699
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 018253 141 EAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~ 160 (359)
|.+++++.++++|+.++|+-
T Consensus 234 em~~Ra~~a~e~G~~~~mvd 253 (425)
T 2zvi_A 234 DLKDKARRAAELGADALLFN 253 (425)
T ss_dssp GHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEEe
Confidence 99999999999999999986
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=18 Score=32.40 Aligned_cols=133 Identities=9% Similarity=-0.015 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--------CCCC-------HHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--------GSNS-------TREAIH 144 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv--------g~~s-------t~~ai~ 144 (359)
.+...++.+.+.|.+||=+.... ...++.++..++-+.+.+ . .+.+.++. ++.+ .+...+
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~--~~~~~~~~~~~~~~~l~~-~--gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~ 92 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASP--LPFYSDIQINELKACAHG-N--GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTD 92 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTT--GGGCCHHHHHHHHHHHHH-T--TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCcc--cCCcCHHHHHHHHHHHHH-c--CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 46777788888999999777643 455677777777665544 3 35555422 1212 234556
Q ss_pred HHHHHHhCCCCEEEE-cCCC----CC-CCCH----HHHHHHHHHHHhc-----CCeEEEeCCCCCCC-CCCHHHHHHHh-
Q 018253 145 ATEQGFAVGMHAALH-INPY----YG-KTSL----EGLISHFDSVLSM-----GPTIIYNVPSRTGQ-DIPPRVIHTMA- 207 (359)
Q Consensus 145 la~~a~~~Gadav~v-~pP~----y~-~~s~----~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~-~ls~e~l~~La- 207 (359)
.++.|+++|++.+.+ +.|. |. ..+. +.+.+.++.+++. +.+.+-|.+...+. --+++.+.+|.
T Consensus 93 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~ 172 (294)
T 3vni_A 93 LLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVK 172 (294)
T ss_dssp HHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHH
T ss_pred HHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHH
Confidence 788888999998874 3332 22 2232 3456666666652 46777877543232 23677777776
Q ss_pred c--CCCeEEEec
Q 018253 208 Q--SPNLAGVKE 217 (359)
Q Consensus 208 ~--~pnivGiK~ 217 (359)
+ .||+.-.=|
T Consensus 173 ~v~~~~vg~~~D 184 (294)
T 3vni_A 173 QVDHNNVKVMLD 184 (294)
T ss_dssp HHCCTTEEEEEE
T ss_pred HcCCCCEEEEEE
Confidence 3 577544444
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=86.42 E-value=1.9 Score=40.28 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=70.3
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHH-------HHHhhCCCcE-EEEecCCCCHHHHHHHHHHHH-hCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGH-------TVNCFGASVK-VIGNTGSNSTREAIHATEQGF-AVG 153 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~-------~v~~~~grvp-Viagvg~~st~~ai~la~~a~-~~G 153 (359)
..++.+-+.||++++...+.+.......++-..+.+. +++..++|.. .++.+.-.+.+++++..+++. +.|
T Consensus 45 ~rl~~Md~~Gv~~vl~~~~~~~~~~~d~~~~~~~~r~~N~~l~~~~~~~p~rf~g~~a~vp~~~~~~a~~el~r~~~~~G 124 (312)
T 3ij6_A 45 ERLTKWPDQNTKQVISLANISPEDFTDSKTSAELCQSANEELSNLVDQHPGKFAGAVAILPMNNIESACKVISSIKDDEN 124 (312)
T ss_dssp HHHHTCSCTTEEEEEEECSCCGGGTSCHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEEECCTTCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCeEEEECCCCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCceeeeEEecCccCHHHHHHHHHHHHHhCC
Confidence 4455555689998887777766555565554444322 2233356654 455555556778888888875 689
Q ss_pred CCEEEEcCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEe
Q 018253 154 MHAALHINPYYG-KTSLEGLISHFDSVLSM-GPTIIYN 189 (359)
Q Consensus 154 adav~v~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiYn 189 (359)
+.++.+.+.+-. .++...+...|+.+.+. .||.++-
T Consensus 125 ~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~g~pv~iH~ 162 (312)
T 3ij6_A 125 LVGAQIFTRHLGKSIADKEFRPVLAQAAKLHVPLWMHP 162 (312)
T ss_dssp EEEEEEESEETTEETTSTTTHHHHHHHHHTTCCEEEEC
T ss_pred CceEeccCCCCCCCCCCccHHHHHHHHHHcCCeEEEcC
Confidence 999987643221 24557788899998887 7998884
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=17 Score=32.16 Aligned_cols=136 Identities=7% Similarity=-0.028 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcC---CCCHHHHHHHHHHHHHhhCCCc-EEEE------ecCCCC-------HHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQ---LMSWDEHIMLIGHTVNCFGASV-KVIG------NTGSNS-------TREAI 143 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~---~LT~~Er~~li~~~v~~~~grv-pVia------gvg~~s-------t~~ai 143 (359)
+...++...+.|.++|=+.......+ .++.++..++-+.+.+ .+=++ .+.+ ..++.+ .+...
T Consensus 14 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~ 92 (285)
T 1qtw_A 14 LANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEK-YHYTSAQILPHDSYLINLGHPVTEALEKSRDAFI 92 (285)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHH-TTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHH-cCCCceeEEecCCcccccCCCCHHHHHHHHHHHH
Confidence 77888888999999998854333322 3677777766665544 22121 0222 222222 23445
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCC-CH----HHHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh-cC---C
Q 018253 144 HATEQGFAVGMHAALHINPYYGKT-SL----EGLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA-QS---P 210 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~-s~----~~l~~yf~~Ia~a---~PiiiYn~P~~t-g~~ls~e~l~~La-~~---p 210 (359)
+.++.|+++|+..+.+.+.+.... +. +.+.+.++.+++. +.+.+=|.+... ...-+++.+.+|. ++ |
T Consensus 93 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~ 172 (285)
T 1qtw_A 93 DEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKS 172 (285)
T ss_dssp HHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHHHCSCGG
T ss_pred HHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCCCcccCCHHHHHHHHHhhcCcc
Confidence 667888899999988776654322 32 2355666666543 456677765322 1223678888876 44 5
Q ss_pred CeEEEec
Q 018253 211 NLAGVKE 217 (359)
Q Consensus 211 nivGiK~ 217 (359)
++.-+=|
T Consensus 173 ~~g~~~D 179 (285)
T 1qtw_A 173 RVGVCID 179 (285)
T ss_dssp GEEEEEE
T ss_pred ceEEEEE
Confidence 6543333
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.22 E-value=2.3 Score=42.56 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....++.++++|++.+.+..+.|. ...-.+.++.+.+..+ .+||++|-.. +. +.++.+.++|||++.+
T Consensus 230 ~~~~a~~l~~aG~d~I~id~a~g~-----~~~~~~~v~~i~~~~p-~~~Vi~g~v~-t~----e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 230 TGERVAALVAAGVDVVVVDTAHGH-----SKGVIERVRWVKQTFP-DVQVIGGNIA-TA----EAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCCS-----BHHHHHHHHHHHHHCT-TSEEEEEEEC-SH----HHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhhcccceEEecccCCc-----chhHHHHHHHHHHHCC-CceEEEeeeC-cH----HHHHHHHHcCCCEEEE
Confidence 345577888999999998877764 2344566777777663 5899997322 22 4578889999999998
|
| >3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=86.18 E-value=6.8 Score=38.44 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=71.2
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~ 137 (359)
++-.++ ++.--+.-+.+.+.+-.+...|+|=+====.-+....+..+||...+-.+++. ++.+.-..+++++.
T Consensus 142 l~gtii---KPklGls~~~~a~~~ye~~~GGlDfiKDDE~l~~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~ 218 (414)
T 3fk4_A 142 LLMSIF---KGMIGRNIGYLKTQLRDQAIGGVDIVKDDEILFENALTPLTKRIVSGKEVLQSVYETYGHKTLYAVNLTGR 218 (414)
T ss_dssp EEEEEC---SSCTTCCHHHHHHHHHHHHHTTCSEEECCTTCCSCSSSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSC
T ss_pred eeEeec---ccccCCCHHHHHHHHHHHHhcCCCcCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEeEcCCC
Confidence 454444 44544889999999999999999954211234467788999998877666654 44444456799885
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc
Q 018253 138 STREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~ 160 (359)
++|.+++++.+.++|+.++|+-
T Consensus 219 -~~em~~ra~~a~e~G~~~~mvd 240 (414)
T 3fk4_A 219 -TFDLKENAKRAVQAGADILLFN 240 (414)
T ss_dssp -GGGHHHHHHHHHHHTCSEEEEC
T ss_pred -HHHHHHHHHHHHHcCCCEEEEc
Confidence 6999999999999999999875
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=86.12 E-value=0.75 Score=42.30 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHH------------------------HHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLV------------------------NMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li------------------------~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
-.|.=-.++=.+++||+||.+.+++++ ++|++.|++-|+.-|... |..|-.
T Consensus 84 ~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~-----~a~~g~ 158 (256)
T 1twd_A 84 ELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS-----DALQGL 158 (256)
T ss_dssp HTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS-----STTTTH
T ss_pred HcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCC-----CHHHHH
Confidence 444444455555679999999998885 558889999999666532 456666
Q ss_pred HHHHHHHHhhCCCcEEEEecC--CCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 115 MLIGHTVNCFGASVKVIGNTG--SNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg--~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+++..++.++ ++.|++|-| ..+..+-+ +.|++.+-.
T Consensus 159 ~~L~~Lv~~a~-~i~Im~GgGv~~~Ni~~l~-------~tGv~e~H~ 197 (256)
T 1twd_A 159 SKIMELIAHRD-APIIMAGAGVRAENLHHFL-------DAGVLEVHS 197 (256)
T ss_dssp HHHHHHHTSSS-CCEEEEESSCCTTTHHHHH-------HHTCSEEEE
T ss_pred HHHHHHHHhhC-CcEEEecCCcCHHHHHHHH-------HcCCCeEeE
Confidence 77777777666 899998654 44444321 467777764
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=85.95 E-value=4.6 Score=38.38 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec---CCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT---GSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv---g~~st~~ai~la~~a~~~Gadav~ 158 (359)
.+.++...++|++++.+.-+..|. ++-.+.++.+.+. + ..+++.+ ...+.+..++.++.+.++|++.+.
T Consensus 96 ~~~i~~a~~aGvd~v~I~~~~s~~-----~~~~~~i~~ak~~-G--~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~ 167 (345)
T 1nvm_A 96 VHDLKNAYQAGARVVRVATHCTEA-----DVSKQHIEYARNL-G--MDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIY 167 (345)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTCG-----GGGHHHHHHHHHH-T--CEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhCCcCEEEEEEeccHH-----HHHHHHHHHHHHC-C--CEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 346777778899998887655543 3444555554442 2 3344443 344567788888888888888665
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 159 HINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 159 v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
+.-- ....+++++.+.++.+.+..
T Consensus 168 l~DT-~G~~~P~~v~~lv~~l~~~~ 191 (345)
T 1nvm_A 168 MADS-GGAMSMNDIRDRMRAFKAVL 191 (345)
T ss_dssp EECT-TCCCCHHHHHHHHHHHHHHS
T ss_pred ECCC-cCccCHHHHHHHHHHHHHhc
Confidence 5432 33345677777777776643
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=85.95 E-value=16 Score=35.66 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc--------CcCCC-------CH-HHHHHHHH----HHHHhh---
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG--------EGQLM-------SW-DEHIMLIG----HTVNCF--- 124 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG--------E~~~L-------T~-~Er~~li~----~~v~~~--- 124 (359)
.+..+.++++++. .+++|.|||=+.|..| -.... |. +-|.+++. .+++.+
T Consensus 159 ~mt~~eI~~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~ 238 (419)
T 3l5a_A 159 AMSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKE 238 (419)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhh
Confidence 3566666666554 4579999999988754 11111 22 66665444 444444
Q ss_pred -CCCcEEEEecC---------CCCHHHHHHHHHHHHh-CCCCEEEEcCCCC----CC--C----CHHHHHHHHHHHHh-c
Q 018253 125 -GASVKVIGNTG---------SNSTREAIHATEQGFA-VGMHAALHINPYY----GK--T----SLEGLISHFDSVLS-M 182 (359)
Q Consensus 125 -~grvpViagvg---------~~st~~ai~la~~a~~-~Gadav~v~pP~y----~~--~----s~~~l~~yf~~Ia~-a 182 (359)
+.+.||.+=++ +.+.++++++++..++ +|+|.+-+....+ +. + ....+.+.+++... .
T Consensus 239 ~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~ 318 (419)
T 3l5a_A 239 APDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGR 318 (419)
T ss_dssp CCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTS
T ss_pred cCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCC
Confidence 34567766443 3468999999999999 9999999887643 11 1 11234444444443 3
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 183 GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 183 ~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+||+. .|--.+++..+++.+.-..|+
T Consensus 319 iPVI~------~GgI~t~e~Ae~~L~~aDlVa 344 (419)
T 3l5a_A 319 IPLIA------SGGINSPESALDALQHADMVG 344 (419)
T ss_dssp SCEEE------CSSCCSHHHHHHHGGGCSEEE
T ss_pred CeEEE------ECCCCCHHHHHHHHHhCCcHH
Confidence 67664 243356777777653233333
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=85.94 E-value=3.5 Score=39.29 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC---CHHH-------HHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN---STRE-------AIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~---st~~-------ai~la 146 (359)
+...+++++...+..|++||++-...|-- +......++-+|++.... ++.. ..--.
T Consensus 51 ~l~~~K~lv~~~~~~~asaILlD~~~G~~--------------a~~~~~~~~GLii~~E~~G~~~~~~gr~p~~l~~~sv 116 (332)
T 3iv3_A 51 QMEELKVLVSEELTPYASSILLDPEYGLP--------------AAQARDREAGLLLAYEKTGYDANTTSRLPDCLVDWSI 116 (332)
T ss_dssp HHHHHHHHHHHHHGGGSSEEEECTTTCHH--------------HHHTSCTTCEEEEECBCCCCCTTSSCCCCCBCTTCCH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEchhhCHH--------------HhccccCCCcEEEEeccCCCCcCCCCCCCccccccCH
Confidence 35567889999999999999998776652 113334567888887321 1111 11227
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHH----HHHHHHHHHHhc-----CCeEE--EeCCC
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLE----GLISHFDSVLSM-----GPTII--YNVPS 192 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~----~l~~yf~~Ia~a-----~Piii--Yn~P~ 192 (359)
++|.++|||+|-+.-. |...+++ +..+++.+|.++ +|+++ +-.|.
T Consensus 117 e~a~~~GADAVk~lv~-~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~ 172 (332)
T 3iv3_A 117 KRLKEAGADAVKFLLY-YDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDE 172 (332)
T ss_dssp HHHHHTTCSEEEEEEE-ECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBT
T ss_pred HHHHHcCCCEEEEEEE-cCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 8889999999987743 3332222 567888888764 69887 44443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=85.87 E-value=3.4 Score=36.92 Aligned_cols=76 Identities=8% Similarity=0.013 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++++.+.+.|++.|.+...++-+. ......++++.+.+.+ .+||+++-+-.+.++ ++.+.+.|||++++.
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~--~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~----~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITASVE--KRKTMLELVEKVAEQI--DIPFTVGGGIHDFET----ASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSS--HHHHHHHHHHHHHTTC--CSCEEEESSCCSHHH----HHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEEECCchhhc--CCcccHHHHHHHHHhC--CCCEEEeCCCCCHHH----HHHHHHcCCCEEEEC
Confidence 34556777899999998887665443 2223345555555433 689999766555544 555566899999886
Q ss_pred CCCC
Q 018253 161 NPYY 164 (359)
Q Consensus 161 pP~y 164 (359)
...+
T Consensus 104 ~~~l 107 (253)
T 1thf_D 104 TAAV 107 (253)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5444
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=85.87 E-value=21 Score=32.79 Aligned_cols=158 Identities=13% Similarity=-0.002 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+...+.+.|+++|-++--.+=|. =+.+ -++.+.+.+ .+||+..=.-.+.. +...|.++|||+|++..
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~-Gs~~----~L~~ir~~v--~lPVl~Kdfi~d~~----qi~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ-GAPE----FLTAARQAC--SLPALRKDFLFDPY----QVYEARSWGADCILIIM 150 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC-CCHH----HHHHHHHTS--SSCEEEESCCCSTH----HHHHHHHTTCSEEEEET
T ss_pred HHHHHHHHHCCCCEEEEeccccccC-CCHH----HHHHHHHhc--CCCEEECCccCCHH----HHHHHHHcCCCEEEEcc
Confidence 3455566789999998764222221 1333 233444444 58998765444444 35567789999999997
Q ss_pred CCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEeccCc-----hh----hHhhhhCC
Q 018253 162 PYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECVG-----ND----RVEHYTGN 230 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ss~-----d~----~l~~~~~~ 230 (359)
-.. +.+++.++++...+- +-+++ .. =+.+.+.+..+ -+.++|+=.... |. ++.....+
T Consensus 151 a~L---~~~~l~~l~~~a~~lGl~~lv-ev-------h~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~ 219 (272)
T 3tsm_A 151 ASV---DDDLAKELEDTAFALGMDALI-EV-------HDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPS 219 (272)
T ss_dssp TTS---CHHHHHHHHHHHHHTTCEEEE-EE-------CSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCT
T ss_pred ccc---CHHHHHHHHHHHHHcCCeEEE-Ee-------CCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCC
Confidence 754 566766666655443 32222 11 13455665544 578999874321 11 33333444
Q ss_pred ceEEEecCCc---hhhhhhhhcCCceeecccccc
Q 018253 231 GIVVWSGNDD---QCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 231 ~~~v~~G~d~---~~~~~~l~~Ga~G~is~~an~ 261 (359)
+..+++...- .-+.....+|++|++-|.+-+
T Consensus 220 ~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~alm 253 (272)
T 3tsm_A 220 DRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLM 253 (272)
T ss_dssp TSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHc
Confidence 5555553221 112233578999999887654
|
| >2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.86 E-value=5.1 Score=39.77 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=68.3
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~~ 141 (359)
-|-+++.--+.-+.+.+.+-.+...|+|=+ =.- .-+....+.++||...+-.+++ .++.+.-..++++ .+.+|
T Consensus 188 gtiiKPklGLs~~~~a~~~ye~~~GGlDfi-KDDE~l~~qpf~p~~eR~~~v~eai~ra~~eTGe~k~y~~NiT-~~~~e 265 (452)
T 2qyg_A 188 FGVIKPNIGLPPQPFAELGYQSWTGGLDIA-KDDEMLADVDWCPLAERAALLGDACRRASAETGVPKIYLANIT-DEVDR 265 (452)
T ss_dssp EEECSSCTTCCSHHHHHHHHHHHHHTCSEE-ECCTTCCSCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCTTH
T ss_pred eeecCCcCCCCHHHHHHHHHHHHhCCCCcc-cCCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCcceecCcCC-CCHHH
Confidence 344455545888999999999999999943 222 3456667899999875544444 3444444567998 59999
Q ss_pred HHHHHHHHHhCCCCEEEEc
Q 018253 142 AIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~ 160 (359)
.+++++.|+++|+.++|+-
T Consensus 266 M~~Ra~~a~e~G~~~vmvd 284 (452)
T 2qyg_A 266 LTELHDVAVANGAGALLIN 284 (452)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEe
Confidence 9999999999999999885
|
| >1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A | Back alignment and structure |
|---|
Probab=85.81 E-value=5.8 Score=39.19 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=69.6
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~ 140 (359)
+-|-+++.--+.-+.+.+.+-.+...|+|=+ =.- .-+....+.++||...+-.+++ .++.+.-..++++ .+.+
T Consensus 167 ~gtiiKPklGLs~~~~a~~~ye~~~GGlDfi-KDDE~~~~qpf~p~~eR~~~v~eai~~a~~eTGe~k~~~~NiT-~~~~ 244 (435)
T 1ykw_A 167 FFGVVKPNIGLSPGEFAEIAYQSWLGGLDIA-KDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT-DEVD 244 (435)
T ss_dssp EEEECSSCSSCCHHHHHHHHHHHHHTTCSEE-ECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCGG
T ss_pred EeeeccCcCCCCHHHHHHHHHHHHhcCCCcc-cCccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecccC-CCHH
Confidence 3444455555899999999999999999933 222 3456678899999875544444 3444444567998 4999
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 018253 141 EAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~ 160 (359)
|.+++++.|+++|+.++|+-
T Consensus 245 em~~Ra~~a~e~G~~~~mvd 264 (435)
T 1ykw_A 245 SLMEKHDVAVRNGANALLIN 264 (435)
T ss_dssp GHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999985
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=85.79 E-value=2.7 Score=40.59 Aligned_cols=98 Identities=10% Similarity=-0.013 Sum_probs=78.1
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGS 136 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~ 136 (359)
-.|.-+..-.| ..++.|.+-+.++++.+++.|++-|.++-|.|= +++.+-.++++.+.+.+++ ++|+=++. +
T Consensus 139 ~~g~~v~~~~e--d~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~~~~lv~~l~~~~~~~~~~~l~~H~-H 212 (370)
T 3rmj_A 139 EYTDDVEFSCE--DALRSEIDFLAEICGAVIEAGATTINIPDTVGY---SIPYKTEEFFRELIAKTPNGGKVVWSAHC-H 212 (370)
T ss_dssp TTCSCEEEEEE--TGGGSCHHHHHHHHHHHHHHTCCEEEEECSSSC---CCHHHHHHHHHHHHHHSTTGGGSEEEEEC-B
T ss_pred HcCCEEEEecC--CCCccCHHHHHHHHHHHHHcCCCEEEecCccCC---cCHHHHHHHHHHHHHhCCCcCceEEEEEe-C
Confidence 34543333333 257899999999999999999999999999984 7899999999999998865 36666554 5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
++..-++.-+-.|.++||+.+=..--
T Consensus 213 nd~GlAvAN~laAv~aGa~~vd~tv~ 238 (370)
T 3rmj_A 213 NDLGLAVANSLAALKGGARQVECTVN 238 (370)
T ss_dssp CTTSCHHHHHHHHHHTTCCEEEEBGG
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecc
Confidence 77888999999999999999876643
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=85.69 E-value=5.2 Score=37.07 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC---------CCCCCCHHHHHHHHHHHHhcC--CeEEEeCCCCC
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP---------YYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRT 194 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP---------~y~~~s~~~l~~yf~~Ia~a~--PiiiYn~P~~t 194 (359)
++.-++.++.+. -.|+.++++|+|++++..- .-...+-++++.|-+.|++.. +.++=|.|. -
T Consensus 28 g~~i~m~tayDa------~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pf-g 100 (275)
T 3vav_A 28 GEKIAMLTCYDA------SFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPF-G 100 (275)
T ss_dssp TCCEEEEECCSH------HHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCT-T
T ss_pred CCcEEEEeCcCH------HHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCC-C
Confidence 443455566653 2466778899999977642 233467899999999999874 568899994 2
Q ss_pred CCCCCHHHH----HHHhcCCCeEEEeccCch---hhHhhhhCCceEEE
Q 018253 195 GQDIPPRVI----HTMAQSPNLAGVKECVGN---DRVEHYTGNGIVVW 235 (359)
Q Consensus 195 g~~ls~e~l----~~La~~pnivGiK~ss~d---~~l~~~~~~~~~v~ 235 (359)
++ -+++.. .+|.+. .+.|+|.+.+. +.++++...++.++
T Consensus 101 sY-~s~~~a~~~a~rl~ka-Ga~aVklEdg~~~~~~i~~l~~~GIpv~ 146 (275)
T 3vav_A 101 TY-GTPADAFASAVKLMRA-GAQMVKFEGGEWLAETVRFLVERAVPVC 146 (275)
T ss_dssp SC-SSHHHHHHHHHHHHHT-TCSEEEEECCGGGHHHHHHHHHTTCCEE
T ss_pred CC-CCHHHHHHHHHHHHHc-CCCEEEECCchhHHHHHHHHHHCCCCEE
Confidence 46 677654 456665 89999988775 24555544445443
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=85.65 E-value=25 Score=34.07 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--C-----------------------
Q 018253 74 GRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--S----------------------- 127 (359)
Q Consensus 74 g~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--r----------------------- 127 (359)
..++.+.+.+.++++.+ .|+..|.+.| ||-..+..+.-.++++.+.+. .+ +
T Consensus 143 ~~ls~eei~~~i~~i~~~~gi~~V~ltG--GEPll~~d~~L~~il~~l~~~-~~v~~i~i~Tng~~~~p~~it~e~l~~L 219 (416)
T 2a5h_A 143 DSMPMERIDKAIDYIRNTPQVRDVLLSG--GDALLVSDETLEYIIAKLREI-PHVEIVRIGSRTPVVLPQRITPELVNML 219 (416)
T ss_dssp SBCCHHHHHHHHHHHHTCTTCCEEEEEE--SCTTSSCHHHHHHHHHHHHTS-TTCCEEEEECSHHHHCGGGCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEEC--CCCCCCCHHHHHHHHHHHHhc-CCccEEEEEecccccccccCCHHHHHHH
Confidence 46889999999999887 6999988888 998888876677777776542 11 0
Q ss_pred ---cEEEEecCCCCH----HHHHHHHHHHHhCCCCEEEEcCCCC--CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Q 018253 128 ---VKVIGNTGSNST----REAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTG 195 (359)
Q Consensus 128 ---vpViagvg~~st----~~ai~la~~a~~~Gadav~v~pP~y--~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg 195 (359)
..+.+++.++.. +++++.++.+.++|.. +.+..... ...+.+++.+..+.+.+. .|.+++..|...|
T Consensus 220 ~~~~~v~Isl~~~~~~ei~~~v~~ai~~L~~aGi~-v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g 297 (416)
T 2a5h_A 220 KKYHPVWLNTHFNHPNEITEESTRACQLLADAGVP-LGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLG 297 (416)
T ss_dssp GGGCSEEEEECCCSGGGCCHHHHHHHHHHHHTTCC-EEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTT
T ss_pred HhcCcEEEEEecCCHHHHhHHHHHHHHHHHHcCCE-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCC
Confidence 123334433222 5677777777777874 22222221 124555666666666554 3555665553333
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=1.6 Score=41.31 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+...++.+++.|++++.+.+..- .++++.+.+ . .+||++.+. +++.++.+.+.|+|++.+.
T Consensus 77 ~~~~~~~a~~~g~d~V~~~~g~p----------~~~i~~l~~-~--g~~v~~~v~------~~~~a~~~~~~GaD~i~v~ 137 (332)
T 2z6i_A 77 VEDIVDLVIEEGVKVVTTGAGNP----------SKYMERFHE-A--GIIVIPVVP------SVALAKRMEKIGADAVIAE 137 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCG----------GGTHHHHHH-T--TCEEEEEES------SHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCh----------HHHHHHHHH-c--CCeEEEEeC------CHHHHHHHHHcCCCEEEEE
Confidence 56788888899999999877421 234444443 2 478988773 2455777888999999997
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhc
Q 018253 161 NPYYGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQ 208 (359)
Q Consensus 161 pP~y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La~ 208 (359)
.+..... .+..-.+.+.++.+. .||+.= | .|. ++.+.++.+
T Consensus 138 g~~~GG~~g~~~~~~ll~~i~~~~~iPViaa------G-GI~~~~~~~~al~ 182 (332)
T 2z6i_A 138 GMEAGGHIGKLTTMTLVRQVATAISIPVIAA------G-GIADGEGAAAGFM 182 (332)
T ss_dssp CTTSSEECCSSCHHHHHHHHHHHCSSCEEEE------S-SCCSHHHHHHHHH
T ss_pred CCCCCCCCCCccHHHHHHHHHHhcCCCEEEE------C-CCCCHHHHHHHHH
Confidence 5522111 111234566666664 576543 2 344 777777543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.43 E-value=4.7 Score=40.33 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHH-------HHHHHHHHHHhhC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFG-ASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~E-------r~~li~~~v~~~~-grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.++.++++|+++|.+.+ |.+...+..+ ....+..+++.+. -++|||+.=|=.+..+..+. .++|||
T Consensus 283 ~a~~l~~aGaD~I~vg~--g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~ka----l~~GAd 356 (490)
T 4avf_A 283 AAKALAEAGADAVKVGI--GPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKA----MVAGAY 356 (490)
T ss_dssp HHHHHHHTTCSEEEECS--SCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHH----HHHTCS
T ss_pred HHHHHHHcCCCEEEECC--CCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHH----HHcCCC
Confidence 35678899999999843 3333333322 2344555555553 36999994443345555544 347999
Q ss_pred EEEEcCCCCC
Q 018253 156 AALHINPYYG 165 (359)
Q Consensus 156 av~v~pP~y~ 165 (359)
+|++-..+..
T Consensus 357 ~V~vGs~~~~ 366 (490)
T 4avf_A 357 CVMMGSMFAG 366 (490)
T ss_dssp EEEECTTTTT
T ss_pred eeeecHHHhc
Confidence 9999976643
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=85.28 E-value=20 Score=35.63 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec---CCCCHHHHHHHHHHHHhCCC
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT---GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv---g~~st~~ai~la~~a~~~Ga 154 (359)
.+..+..++..+++|++.+-++.++.+. +.-...++.+.+ .+.++-+-++. .-.+.+..++.++.+.++||
T Consensus 99 ddv~~~~v~~a~~~Gvd~i~if~~~sd~-----~ni~~~i~~ak~-~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Ga 172 (464)
T 2nx9_A 99 DDVVDTFVERAVKNGMDVFRVFDAMNDV-----RNMQQALQAVKK-MGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGV 172 (464)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTCCT-----HHHHHHHHHHHH-TTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHhCCcCEEEEEEecCHH-----HHHHHHHHHHHH-CCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCC
Confidence 4557888999999999999999999887 222334444333 22222222222 12368999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
|.+.+.- .....++.++.+.++.+.+. .||-++
T Consensus 173 d~I~l~D-T~G~~~P~~v~~lv~~l~~~~~~~i~~H 207 (464)
T 2nx9_A 173 DSIALKD-MAGILTPYAAEELVSTLKKQVDVELHLH 207 (464)
T ss_dssp SEEEEEE-TTSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CEEEEcC-CCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 9776643 34456788888888888776 576555
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=4.9 Score=36.29 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHH
Q 018253 70 YLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQ 148 (359)
Q Consensus 70 F~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~ 148 (359)
.++|-+...+. ++.+.++|+|.|.+++|.| .|.+.-.++++.+.+ .++|++.=.+. +..
T Consensus 15 gDP~~~~t~~~----~~~l~~~GaD~IelG~S~g----~t~~~~~~~v~~ir~---~~~Pivl~~y~~n~i--------- 74 (234)
T 2f6u_A 15 LDPDRTNTDEI----IKAVADSGTDAVMISGTQN----VTYEKARTLIEKVSQ---YGLPIVVEPSDPSNV--------- 74 (234)
T ss_dssp ECTTSCCCHHH----HHHHHTTTCSEEEECCCTT----CCHHHHHHHHHHHTT---SCCCEEECCSSCCCC---------
T ss_pred eCCCccccHHH----HHHHHHcCCCEEEECCCCC----CCHHHHHHHHHHhcC---CCCCEEEecCCcchh---------
Confidence 34554444444 5677889999999999755 477777777777765 37999887766 333
Q ss_pred HHhCCCCEEEEc
Q 018253 149 GFAVGMHAALHI 160 (359)
Q Consensus 149 a~~~Gadav~v~ 160 (359)
+.|+|++++.
T Consensus 75 --~~gvDg~iip 84 (234)
T 2f6u_A 75 --VYDVDYLFVP 84 (234)
T ss_dssp --CCCSSEEEEE
T ss_pred --hcCCCEEEEc
Confidence 7799998874
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=85.20 E-value=4.9 Score=37.99 Aligned_cols=88 Identities=6% Similarity=-0.122 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHHHHHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREAIHATEQGF 150 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg~~-st~~ai~la~~a~ 150 (359)
+..+.+....+++.+.+.|++.|-+.+.+-+.. .........+++.+.+.+ ++|||++ |.. +.+++.+ +.
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~-Ggi~s~~~a~~----~l 296 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAV-GMITDGSMAEE----IL 296 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEEC-SSCCSHHHHHH----HH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEE-CCCCCHHHHHH----HH
Confidence 457888999999999999999999876543211 111112345666666666 5798864 444 5555444 44
Q ss_pred hCC-CCEEEEcCCCCCCCC
Q 018253 151 AVG-MHAALHINPYYGKTS 168 (359)
Q Consensus 151 ~~G-adav~v~pP~y~~~s 168 (359)
+.| ||.|++.-++...|.
T Consensus 297 ~~G~aD~V~iGR~~i~nPd 315 (338)
T 1z41_A 297 QNGRADLIFIGRELLRDPF 315 (338)
T ss_dssp HTTSCSEEEECHHHHHCTT
T ss_pred HcCCceEEeecHHHHhCch
Confidence 567 999999988776553
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.09 E-value=1.8 Score=40.99 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHH
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIH 204 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~ 204 (359)
..+.+++|++.|.. +.+.+|+-.+.+.+.+.+..+++.+..+-. -+++...|.. +|+.+.
T Consensus 124 ~~~~v~~a~~~g~~-v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~-i~l~DT~G~~-~P~~v~ 183 (325)
T 3eeg_A 124 AVAAVKQAKKVVHE-VEFFCEDAGRADQAFLARMVEAVIEAGADV-VNIPDTTGYM-LPWQYG 183 (325)
T ss_dssp THHHHHHHHTTSSE-EEEEEETGGGSCHHHHHHHHHHHHHHTCSE-EECCBSSSCC-CHHHHH
T ss_pred HHHHHHHHHHCCCE-EEEEccccccchHHHHHHHHHHHHhcCCCE-EEecCccCCc-CHHHHH
Confidence 44566677777864 556667767778888888888877764322 3345566764 444333
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=85.05 E-value=4.2 Score=40.77 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=46.5
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHH-------HHHHHHHHHHhhC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFG-ASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~E-------r~~li~~~v~~~~-grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.++.++++|+++|.+.++.| ...+..+ ....+..+++.+. -++|||+.=|-.+..++.+. .++|||
T Consensus 285 ~a~~l~~aGaD~I~Vg~g~G--s~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~ka----la~GAd 358 (496)
T 4fxs_A 285 GARALIEAGVSAVKVGIGPG--SICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKA----IAAGAS 358 (496)
T ss_dssp HHHHHHHHTCSEEEECSSCC--TTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH----HHTTCS
T ss_pred HHHHHHHhCCCEEEECCCCC--cCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHH----HHcCCC
Confidence 35667789999999875333 2223322 2234444444442 25999994443455555543 457999
Q ss_pred EEEEcCCCCC
Q 018253 156 AALHINPYYG 165 (359)
Q Consensus 156 av~v~pP~y~ 165 (359)
+||+-..+..
T Consensus 359 ~V~iGs~f~~ 368 (496)
T 4fxs_A 359 CVMVGSMFAG 368 (496)
T ss_dssp EEEESTTTTT
T ss_pred eEEecHHHhc
Confidence 9999977654
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=85.03 E-value=2 Score=38.54 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=54.8
Q ss_pred EeeecCCCCCCCCCH--HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHH
Q 018253 64 TAIKTPYLPDGRFDL--EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTR 140 (359)
Q Consensus 64 ~al~TPF~~dg~ID~--~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-gvg~~st~ 140 (359)
..++|+++..+..+. +...++++.-.+.|++|+++.++ ..+| ++.+.+..+.+.+++. |++...-
T Consensus 120 v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at-------~~~e----~~~ir~~~~~~~~iv~PGI~~~g~- 187 (228)
T 3m47_A 120 VFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPST-------RPER----LSRLREIIGQDSFLISPGVGAQGG- 187 (228)
T ss_dssp EEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSS-------CHHH----HHHHHHHHCSSSEEEECC-------
T ss_pred eEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCC-------ChHH----HHHHHHhcCCCCEEEecCcCcCCC-
Confidence 456788877654432 33455566666799999775442 1222 2233445555566554 7765321
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDS 178 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~ 178 (359)
+ . .+.++|+|.+++-.|.|...++.+..+-+++
T Consensus 188 -~---p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~ 220 (228)
T 3m47_A 188 -D---P-GETLRFADAIIVGRSIYLADNPAAAAAGAIE 220 (228)
T ss_dssp --------CGGGTCSEEEECHHHHTSSCHHHHHHHHHH
T ss_pred -C---H-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHH
Confidence 1 2 5667999999998888876776554444443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=84.97 E-value=2.9 Score=42.54 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=61.9
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+.+.|++.|++.+-+-++..--. -.++++.+.+.+ ++|||+.=+-.+.++..++.+. .|+|++++..-
T Consensus 456 e~a~~~~~~Ga~~il~t~~~~dG~~~G~--d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~---~G~~gvivg~a 528 (555)
T 1jvn_A 456 ELTRACEALGAGEILLNCIDKDGSNSGY--DLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLK---TRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHTTCCEEEECCGGGTTTCSCC--CHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHH---SCCSEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCC--CHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHh---cCChHHHHHHH
Confidence 4667778999999999886655543222 145566666654 6899997666678877766553 69999999987
Q ss_pred CCCC-CCHHHHHHHH
Q 018253 163 YYGK-TSLEGLISHF 176 (359)
Q Consensus 163 ~y~~-~s~~~l~~yf 176 (359)
+|.. .+-+++.+|.
T Consensus 529 ~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 529 FHRGEFTVNDVKEYL 543 (555)
T ss_dssp HHTTSCCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 6654 4778877764
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=84.94 E-value=15 Score=34.82 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
.|.+.+.+.+....+.|.+++=+-...+ +.++-.+.++.+++.++.++++.+-+ ++.+.++++++++..++.|+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~-----~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 219 (371)
T 2ovl_A 145 LPVADLKTQADRFLAGGFRAIKMKVGRP-----DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL 219 (371)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEEECCCS-----SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCC-----CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4788899999999999999887754332 45666788888889888889998865 45689999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh--cCCCeEEEeccC--chh---hHh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA--QSPNLAGVKECV--GND---RVE 225 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La--~~pnivGiK~ss--~d~---~l~ 225 (359)
+.+ --|+- ..+ .+.+++|.+. .||+.=. .-.+++.+.++. ..-+++-+|-+- +-. ++.
T Consensus 220 ~~i--EqP~~-~~d----~~~~~~l~~~~~iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~ 286 (371)
T 2ovl_A 220 HWI--EEPTI-PDD----LVGNARIVRESGHTIAGGE------NLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVA 286 (371)
T ss_dssp SEE--ECCSC-TTC----HHHHHHHHHHHCSCEEECT------TCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHH
T ss_pred CEE--ECCCC-ccc----HHHHHHHHhhCCCCEEeCC------CCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHH
Confidence 854 44541 112 4455666654 6776543 235688888886 357888899754 222 333
Q ss_pred hhh-CCceEEEecC
Q 018253 226 HYT-GNGIVVWSGN 238 (359)
Q Consensus 226 ~~~-~~~~~v~~G~ 238 (359)
++. .-++.++.|.
T Consensus 287 ~~A~~~gi~~~~h~ 300 (371)
T 2ovl_A 287 ALAEANNMLLTSHG 300 (371)
T ss_dssp HHHHHTTCCEEECS
T ss_pred HHHHHcCCeEcccc
Confidence 322 2345566654
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=25 Score=32.80 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cC---ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe------cCCCCHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG-GT---TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN------TGSNSTREAIHA 145 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~-Gs---tGE~~~LT~~Er~~li~~~v~~~~grvpViag------vg~~st~~ai~l 145 (359)
-+.+.++..+..+.+.||+.|+++ |- .|+.....-. +|++.+.+. + ..-|-+. ..+.+.+.-++.
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~---dLv~~ir~~-~-~f~IgvA~yPE~Hp~a~~~~~d~~~ 168 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYAS---DLVTLLKEV-A-DFDISVAAYPEVHPEAKSAQADLLN 168 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHH---HHHHHHHHH-C-CCEEEEEECTTCCTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHH---HHHHHHHHc-C-CCeEEEEeCCCcCCCCCCHHHHHHH
Confidence 688999999999999999999987 32 1223334444 444444333 2 2222111 123466666666
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCC-----------CCCCCCCHHHHHHHhc
Q 018253 146 TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPS-----------RTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~-----------~tg~~ls~e~l~~La~ 208 (359)
.+.=.++|||.++ +-++| +.+.+.+|.+.+.+. .||+.==.|- .+|+.++.+++++|.+
T Consensus 169 Lk~KvdAGAdf~i-TQ~ff---D~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP~~l~~~l~~ 241 (304)
T 3fst_A 169 LKRKVDAGANRAI-TQFFF---DVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDG 241 (304)
T ss_dssp HHHHHHHTCCEEE-ECCCS---CHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCCHHHHHHHTT
T ss_pred HHHHHHcCCCEEE-eCccC---CHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCCHHHHHHHHh
Confidence 6666789999754 44666 678888888888765 5776444442 2366666666666653
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=4.4 Score=39.89 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhCCCCE
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~Gada 156 (359)
+..+++|++.+-+..+++|.+ ..|.+|-.+.+..+++.+. ....|.++. ...+.+..++.++.+.++|+|.
T Consensus 117 ~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~ 196 (423)
T 3ivs_A 117 RVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNR 196 (423)
T ss_dssp HHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCc
Confidence 344445555555555555543 2333333333333333221 122333322 1223444555555555555554
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+.+. =.....++.++.+.++.+.+
T Consensus 197 i~l~-DTvG~~~P~~v~~lv~~l~~ 220 (423)
T 3ivs_A 197 VGIA-DTVGCATPRQVYDLIRTLRG 220 (423)
T ss_dssp EEEE-ETTSCCCHHHHHHHHHHHHH
T ss_pred cccC-CccCcCCHHHHHHHHHHHHh
Confidence 3332 12223344445555554444
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=84.85 E-value=20 Score=31.56 Aligned_cols=124 Identities=10% Similarity=-0.035 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-ec-CCCCHHHHHHHHHHHHhCCCCEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NT-GSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-gv-g~~st~~ai~la~~a~~~Gadav 157 (359)
.+...++.+.+.|.+||=+.+..- ...++.++..++.+...+ .+ +.+.. +. ...+.+...+.++.|+++|+..+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~~~~~~l~~-~g--l~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v 106 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHL-PLNSTDEQIRAFHDKCAA-HK--VTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLI 106 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTS-CTTCCHHHHHHHHHHHHH-TT--CEEEEEEEEEECSHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccC-CCCCCHHHHHHHHHHHHH-cC--CeEEEEeccccCCHHHHHHHHHHHHHhCCCEE
Confidence 466778888899999998876521 234677776666655444 32 44332 22 12577888889999999999998
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC-CCCCCCCCCHHHHHHHhc--CCCeEEE
Q 018253 158 LHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV-PSRTGQDIPPRVIHTMAQ--SPNLAGV 215 (359)
Q Consensus 158 ~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~-P~~tg~~ls~e~l~~La~--~pnivGi 215 (359)
.+.|. . +..+...++++. +.+.+.|. |..+ .--+++.+.+|.+ .|++.-.
T Consensus 107 ~~~p~------~-~~l~~l~~~a~~~gv~l~lEn~~~~~~-~~~~~~~~~~ll~~~~p~vg~~ 161 (257)
T 3lmz_A 107 VGVPN------Y-ELLPYVDKKVKEYDFHYAIHLHGPDIK-TYPDATDVWVHTKDLDPRIGMC 161 (257)
T ss_dssp EEEEC------G-GGHHHHHHHHHHHTCEEEEECCCTTCS-SSCSHHHHHHHHTTSCTTEEEE
T ss_pred EecCC------H-HHHHHHHHHHHHcCCEEEEecCCCccc-ccCCHHHHHHHHHhCCCCccEE
Confidence 87543 1 222333333433 57778887 4322 2236777777763 5765433
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=84.76 E-value=4.5 Score=37.02 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
++++.++.+.++|++|+++.. |..||..++.+.+.++ .+.+|.=+.-+++. ++++...+.+-+.+-.
T Consensus 104 G~e~F~~~~~~aGvdG~IipD-------LP~eE~~~~~~~~~~~---Gl~~I~lvaP~t~~---eRi~~ia~~a~gFiY~ 170 (252)
T 3tha_A 104 GLEKFVKKAKSLGICALIVPE-------LSFEESDDLIKECERY---NIALITLVSVTTPK---ERVKKLVKHAKGFIYL 170 (252)
T ss_dssp CHHHHHHHHHHTTEEEEECTT-------CCGGGCHHHHHHHHHT---TCEECEEEETTSCH---HHHHHHHTTCCSCEEE
T ss_pred hHHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHHHHHc---CCeEEEEeCCCCcH---HHHHHHHHhCCCeEEE
Confidence 467777788888888888765 6666766666655443 12222222222222 3333333333222322
Q ss_pred cC--CCCCCCC--HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 160 IN--PYYGKTS--LEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 160 ~p--P~y~~~s--~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
+. ..-...+ .+++.++++.|.+. .|+++ |..+ +++.++++++.
T Consensus 171 Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v-------GfGIst~e~a~~~~~~ 220 (252)
T 3tha_A 171 LASIGITGTKSVEEAILQDKVKEIRSFTNLPIFV-------GFGIQNNQDVKRMRKV 220 (252)
T ss_dssp ECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEE-------ESSCCSHHHHHHHTTT
T ss_pred EecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEE-------EcCcCCHHHHHHHHhc
Confidence 22 1111111 23456666666654 45544 5566 46777776653
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.70 E-value=14 Score=33.37 Aligned_cols=98 Identities=15% Similarity=0.031 Sum_probs=65.1
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecCCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSNS 138 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg~~s 138 (359)
+-...+|-| +.|.-..+....-++.-++.|++.|=+--.-|-... +-.+-+..+++.+.+ -++||.-++-.+
T Consensus 72 v~v~tvigF-P~G~~~~~~k~~e~~~Av~~GAdEID~vinig~~~~----~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~ 146 (234)
T 1n7k_A 72 VKLCSVIGF-PLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGPE----AVYREVSGIVKLAKSYGAVVKVILEAPLWD 146 (234)
T ss_dssp CCEEEEEST-TTCCSCHHHHHHHHHHHHHHTCCEEEECCCGGGCHH----HHHHHHHHHHHHHHHTTCEEEEECCGGGSC
T ss_pred ceEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCEEEEeccchHHHH----HHHHHHHHHHHHHhhcCCeEEEEEeccCCC
Confidence 334445666 466677788888889999999999877666664433 333333344443322 244588777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++-...+|.+.++|||.|=...-|.
T Consensus 147 ~e~i~~a~ria~eaGADfVKTsTG~~ 172 (234)
T 1n7k_A 147 DKTLSLLVDSSRRAGADIVKTSTGVY 172 (234)
T ss_dssp HHHHHHHHHHHHHTTCSEEESCCSSS
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 88888888999999999776654443
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.69 E-value=21 Score=31.70 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=104.1
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.++++.+-. .|.+.+...++.+++.|++-+=+--. ..+ -.+.++...+..+ ++.+-+|+ .-
T Consensus 16 ~~~ii~vir~-------~~~~~~~~~~~al~~gGv~~iel~~k-----~~~---~~~~i~~l~~~~~-~l~vgaGt--vl 77 (224)
T 1vhc_A 16 ELKIVPVIAL-------DNADDILPLADTLAKNGLSVAEITFR-----SEA---AADAIRLLRANRP-DFLIAAGT--VL 77 (224)
T ss_dssp HHCEEEEECC-------SSGGGHHHHHHHHHHTTCCEEEEETT-----STT---HHHHHHHHHHHCT-TCEEEEES--CC
T ss_pred HCCeEEEEeC-------CCHHHHHHHHHHHHHcCCCEEEEecc-----Cch---HHHHHHHHHHhCc-CcEEeeCc--Ee
Confidence 4566666544 45566788999999999997665422 122 2345565555554 44455554 22
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEec
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE 217 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ 217 (359)
+. +.++.|.++|||++.. |- +..++.+.-++ . -.|+++ | -.+++.+.+..+ -...+++ .
T Consensus 78 ~~---d~~~~A~~aGAd~v~~--p~----~d~~v~~~ar~-~-g~~~i~-------G-v~t~~e~~~A~~~Gad~vk~-F 137 (224)
T 1vhc_A 78 TA---EQVVLAKSSGADFVVT--PG----LNPKIVKLCQD-L-NFPITP-------G-VNNPMAIEIALEMGISAVKF-F 137 (224)
T ss_dssp SH---HHHHHHHHHTCSEEEC--SS----CCHHHHHHHHH-T-TCCEEC-------E-ECSHHHHHHHHHTTCCEEEE-T
T ss_pred eH---HHHHHHHHCCCCEEEE--CC----CCHHHHHHHHH-h-CCCEEe-------c-cCCHHHHHHHHHCCCCEEEE-e
Confidence 22 6778888899999842 32 23455554444 1 135443 3 245655555443 3456666 3
Q ss_pred cC----chhhHhhhhC--CceEE--EecCCchhhhhhhhc-CCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 018253 218 CV----GNDRVEHYTG--NGIVV--WSGNDDQCHDARWNH-GATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEW 288 (359)
Q Consensus 218 ss----~d~~l~~~~~--~~~~v--~~G~d~~~~~~~l~~-Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~~ 288 (359)
.. +-..++.... +++.+ ..|-+..-+...+.. |++|+. .+.+++... .++++..++.++...+.+.
T Consensus 138 pa~~~gG~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~--gS~i~~~~~---i~~~~~~~i~~~a~~~~~~ 212 (224)
T 1vhc_A 138 PAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG--GSWFVEKKL---IQSNNWDEIGRLVREVIDI 212 (224)
T ss_dssp TTTTTTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE--ECGGGCHHH---HHTTCHHHHHHHHHHHHHH
T ss_pred eCccccCHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE--EchhcCcch---hccCCHHHHHHHHHHHHHH
Confidence 31 1122332221 23444 446655555666777 666665 455555432 2566766676666666664
Q ss_pred H
Q 018253 289 L 289 (359)
Q Consensus 289 l 289 (359)
.
T Consensus 213 ~ 213 (224)
T 1vhc_A 213 I 213 (224)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.54 E-value=2.4 Score=37.94 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=64.5
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++..++.|++++...++. ..+++.+.+ . .++++.|+. +..| ++.|.+.|+|.+.+.|
T Consensus 80 d~~~~A~~aGAd~v~~p~~d-----------~~v~~~ar~-~--g~~~i~Gv~--t~~e----~~~A~~~Gad~vk~Fp- 138 (224)
T 1vhc_A 80 EQVVLAKSSGADFVVTPGLN-----------PKIVKLCQD-L--NFPITPGVN--NPMA----IEIALEMGISAVKFFP- 138 (224)
T ss_dssp HHHHHHHHHTCSEEECSSCC-----------HHHHHHHHH-T--TCCEECEEC--SHHH----HHHHHHTTCCEEEETT-
T ss_pred HHHHHHHHCCCCEEEECCCC-----------HHHHHHHHH-h--CCCEEeccC--CHHH----HHHHHHCCCCEEEEee-
Confidence 45677788999999755432 345565555 3 357787854 3444 4567789999999943
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC-eEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 163 YYGKTSLEGLISHFDSVLSMGP-TIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a~P-iiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
...-+-.+|++++....| +=+ .| +| .++++.+.++.+.+++.|+=
T Consensus 139 ----a~~~gG~~~lk~l~~~~~~ipv--va--iG-GI~~~N~~~~l~agga~~v~ 184 (224)
T 1vhc_A 139 ----AEASGGVKMIKALLGPYAQLQI--MP--TG-GIGLHNIRDYLAIPNIVACG 184 (224)
T ss_dssp ----TTTTTHHHHHHHHHTTTTTCEE--EE--BS-SCCTTTHHHHHTSTTBCCEE
T ss_pred ----CccccCHHHHHHHHhhCCCCeE--EE--EC-CcCHHHHHHHHhcCCCEEEE
Confidence 111112677888876543 212 12 33 46778888888776655554
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=84.54 E-value=6.7 Score=37.27 Aligned_cols=101 Identities=8% Similarity=0.043 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.++.+.+.+.++.+.+.|++.|++.|+++|...+..+.-.++++.+.+. .+.+.+..|.. +++ .++..+++|+
T Consensus 98 ~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~---g~~i~~t~G~l-~~e---~l~~L~~aGv 170 (369)
T 1r30_A 98 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM---GLEACMTLGTL-SES---QAQRLANAGL 170 (369)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHT---TSEEEEECSSC-CHH---HHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHc---CCeEEEecCCC-CHH---HHHHHHHCCC
Confidence 3678888888888888899998888877666667778888888877763 24454444443 333 3344456688
Q ss_pred CEEEEcCCC----C---C-CCCHHHHHHHHHHHHhc
Q 018253 155 HAALHINPY----Y---G-KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 155 dav~v~pP~----y---~-~~s~~~l~~yf~~Ia~a 182 (359)
|.+.+-.=. | . ..+.+++.+-++.+.+.
T Consensus 171 d~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~ 206 (369)
T 1r30_A 171 DYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA 206 (369)
T ss_dssp CEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHH
T ss_pred CEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 887643211 1 0 13445555555555554
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=84.41 E-value=0.45 Score=44.89 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
.+++.+.+.|+++|.+-|.+.+.. ++..-..++++. ... ++|||+.=+=.+.+++.+..+ +.|||+||+--+
T Consensus 144 ~~a~~l~~~G~d~i~v~g~~~~~~-~~~~~~~~~i~~---i~~-~ipVi~~GgI~s~~da~~~l~---~~gad~V~iGR~ 215 (318)
T 1vhn_A 144 EIYRILVEEGVDEVFIHTRTVVQS-FTGRAEWKALSV---LEK-RIPTFVSGDIFTPEDAKRALE---ESGCDGLLVARG 215 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTT-TSSCCCGGGGGG---SCC-SSCEEEESSCCSHHHHHHHHH---HHCCSEEEESGG
T ss_pred HHHHHHHHhCCCEEEEcCCCcccc-CCCCcCHHHHHH---HHc-CCeEEEECCcCCHHHHHHHHH---cCCCCEEEECHH
Confidence 788888899999999987665431 111000122322 223 899997544456666665544 359999999999
Q ss_pred CCCCCC
Q 018253 163 YYGKTS 168 (359)
Q Consensus 163 ~y~~~s 168 (359)
.+..|.
T Consensus 216 ~l~~P~ 221 (318)
T 1vhn_A 216 AIGRPW 221 (318)
T ss_dssp GTTCTT
T ss_pred HHhCcc
Confidence 987765
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=84.33 E-value=3.9 Score=38.88 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
.+..|.+-+.++++.+.+.|++.|.+.-|.|= +++++-.++++.+.+.++ .+|+=++. +++..-++..+-.|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~p-~~~i~~H~-Hnd~GlA~AN~laAv~a 237 (337)
T 3ble_A 163 GFRNSPDYVKSLVEHLSKEHIERIFLPDTLGV---LSPEETFQGVDSLIQKYP-DIHFEFHG-HNDYDLSVANSLQAIRA 237 (337)
T ss_dssp HHHHCHHHHHHHHHHHHTSCCSEEEEECTTCC---CCHHHHHHHHHHHHHHCT-TSCEEEEC-BCTTSCHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEecCCCC---cCHHHHHHHHHHHHHhcC-CCeEEEEe-cCCcchHHHHHHHHHHh
Confidence 46788999999999999999999999999886 689999999999998874 56766554 56788889999999999
Q ss_pred CCCEEEEcCCCCC----CCCHHHHHHHHHHH
Q 018253 153 GMHAALHINPYYG----KTSLEGLISHFDSV 179 (359)
Q Consensus 153 Gadav~v~pP~y~----~~s~~~l~~yf~~I 179 (359)
||+.+=..---+. ..+-|+++..++..
T Consensus 238 Ga~~vd~tv~GlG~~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 238 GVKGLHASINGLGERAGNTPLEALVTTIHDK 268 (337)
T ss_dssp TCSEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred CCCEEEEecccccccccchhHHHHHHHHHHh
Confidence 9999866543332 35567777777654
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=7 Score=37.96 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG 99 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~ 99 (359)
-|.+...+++++..+.|++.+.++
T Consensus 157 ~d~~~~~~~~~ra~~~G~~al~it 180 (392)
T 2nzl_A 157 KDREVTKKLVRQAEKMGYKAIFVT 180 (392)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe
Confidence 377888999999888999988873
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=84.08 E-value=29 Score=33.18 Aligned_cols=144 Identities=8% Similarity=0.016 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC-HHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT-~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~G 153 (359)
.+.+.+.+.+....+.|.+++=+-+. .+ .++=.++++.+++.++.++++.+-+ ++.+.++++++++..++.|
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g------~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~ 221 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPM------LDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFN 221 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCC------CSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccC------CChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 47788999999999999998876533 12 4666788888888888889998865 4568999999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccC--chh---hH
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECV--GND---RV 224 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss--~d~---~l 224 (359)
++.+ --|.- +. -.+.+++|.+. .||+.=. .-.+++.+.++.+ .-+++-+|-+- +-. ++
T Consensus 222 i~~i--EqP~~--~~---d~~~~~~l~~~~~iPIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 288 (391)
T 2qgy_A 222 PYWI--EEPVD--GE---NISLLTEIKNTFNMKVVTGE------KQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEI 288 (391)
T ss_dssp CSEE--ECSSC--TT---CHHHHHHHHHHCSSCEEECT------TCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHH
T ss_pred CCeE--eCCCC--hh---hHHHHHHHHhhCCCCEEEcC------CcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHH
Confidence 9854 34431 11 14556666665 5766532 2356888888873 56888899754 222 33
Q ss_pred hhhh-CCceEEEecC
Q 018253 225 EHYT-GNGIVVWSGN 238 (359)
Q Consensus 225 ~~~~-~~~~~v~~G~ 238 (359)
.++. ..++.++.|.
T Consensus 289 ~~~A~~~gi~~~~~~ 303 (391)
T 2qgy_A 289 SNEASNNGIFISPHC 303 (391)
T ss_dssp HHHHHHTTCEECCBC
T ss_pred HHHHHHCCCEEeccC
Confidence 3332 2355665554
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=83.99 E-value=2.4 Score=42.12 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+.++++++.|++.+++.++.|. .+.-.+.++.+.+..+ .+||++|-.. + .+.++.+.++|+|++.+.
T Consensus 234 ~~~~a~~l~~~G~d~ivi~~a~g~-----~~~~~~~i~~l~~~~p-~~pvi~G~v~-t----~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 234 TFERAEALFEAGADAIVIDTAHGH-----SAGVLRKIAEIRAHFP-NRTLIAGNIA-T----AEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHHHHHHHTCSEEEECCSCTT-----CHHHHHHHHHHHHHCS-SSCEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEeeecCc-----chhHHHHHHHHHHHCC-CCcEeCCCcc-C----HHHHHHHHHcCCCEEEEC
Confidence 356688899999999998875442 2344566667676663 6899876332 2 266778889999999875
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=83.92 E-value=28 Score=32.60 Aligned_cols=171 Identities=11% Similarity=0.099 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-------CCHHH-HH-HHHHH
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-------NSTRE-AI-HATEQ 148 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-------~st~~-ai-~la~~ 148 (359)
++-++++++.+.+.|++|++..- |=. +...|+ -+..+++ ++...+- ...++ .. --.+.
T Consensus 70 ~~~l~~~~~~~~~~Gvdavl~~~--gi~------~d~~Li----~~L~~~t-v~gs~~~ggl~g~~~~~d~~~~~~sVe~ 136 (307)
T 3fok_A 70 YELLERMAIALSRPGVDGVLGTP--DII------DDLAAL----GLLDDKI-VVGSMNRGGLRGASFEMDDRYTGYNVSS 136 (307)
T ss_dssp HHHHHHHHHHHHSTTCCEEEECH--HHH------HHHHHT----TCCTTCE-EEEECCCCSCTTCTTTTSCCCCSCCHHH
T ss_pred HHHHHHHHHHHhccCCCEEEECc--chh------hcccce----EEecCcc-cccccCccccccCCCCccccccccCHHH
Confidence 56789999999999999998622 211 222222 2355553 3332221 00111 11 13445
Q ss_pred HHhCCCCEEEEcCCC-CCCCCHHHHHHHHHHHHhc-----CCeEEE--eCCCC---CCCCCCHHHHHHH---h-cC-CC-
Q 018253 149 GFAVGMHAALHINPY-YGKTSLEGLISHFDSVLSM-----GPTIIY--NVPSR---TGQDIPPRVIHTM---A-QS-PN- 211 (359)
Q Consensus 149 a~~~Gadav~v~pP~-y~~~s~~~l~~yf~~Ia~a-----~PiiiY--n~P~~---tg~~ls~e~l~~L---a-~~-pn- 211 (359)
|.++|+|++-+.... +..+.+.+.++.+.++.++ +|+++. =.|.. ...+.+++.+... + ++ -.
T Consensus 137 AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs 216 (307)
T 3fok_A 137 MVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDS 216 (307)
T ss_dssp HHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCC
T ss_pred HHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 556799998754333 3456677788888888763 697764 22321 1235788877654 4 44 25
Q ss_pred ---eEEEeccCch-hhHhhhhCCceEEEecCC----chhh---hhhhh-cCCceeeccccccc
Q 018253 212 ---LAGVKECVGN-DRVEHYTGNGIVVWSGND----DQCH---DARWN-HGATGVISVTSNLV 262 (359)
Q Consensus 212 ---ivGiK~ss~d-~~l~~~~~~~~~v~~G~d----~~~~---~~~l~-~Ga~G~is~~an~~ 262 (359)
|+=++++ .+ .++.+.+.-.+-+..|.- +.++ ..++. .|+.|++.|=.-+.
T Consensus 217 ~~tivK~~y~-e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 217 SYTWMKLPVV-EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp SSEEEEEECC-TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred CCCEEEeCCc-HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 6656665 22 345444443344444432 1222 22367 69999987744333
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=83.85 E-value=4.6 Score=38.01 Aligned_cols=101 Identities=20% Similarity=0.105 Sum_probs=61.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+...++.+++.|++.+.+.+. + . . ++++.+.+ ..++|+..+.+ .+.++.+.+.|+|++.+.
T Consensus 91 ~~~~~~~~~~~g~d~V~l~~g--~----p-~---~~~~~l~~---~g~~v~~~v~s------~~~a~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 91 ADDLVKVCIEEKVPVVTFGAG--N----P-T---KYIRELKE---NGTKVIPVVAS------DSLARMVERAGADAVIAE 151 (326)
T ss_dssp HHHHHHHHHHTTCSEEEEESS--C----C-H---HHHHHHHH---TTCEEEEEESS------HHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCC--C----c-H---HHHHHHHH---cCCcEEEEcCC------HHHHHHHHHcCCCEEEEE
Confidence 567788888999999887553 1 2 2 33444433 25788888753 445667888999999998
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHh
Q 018253 161 NPYYGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMA 207 (359)
Q Consensus 161 pP~y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La 207 (359)
.+-+... .+..-.+.+.++.+. .||+.= .| |. ++.+.+..
T Consensus 152 g~~~GG~~G~~~~~~ll~~i~~~~~iPviaa-----GG--I~~~~dv~~al 195 (326)
T 3bo9_A 152 GMESGGHIGEVTTFVLVNKVSRSVNIPVIAA-----GG--IADGRGMAAAF 195 (326)
T ss_dssp CTTSSEECCSSCHHHHHHHHHHHCSSCEEEE-----SS--CCSHHHHHHHH
T ss_pred CCCCCccCCCccHHHHHHHHHHHcCCCEEEE-----CC--CCCHHHHHHHH
Confidence 7654322 111123555666654 576542 23 43 66666654
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=3.5 Score=36.56 Aligned_cols=88 Identities=13% Similarity=-0.064 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcC-CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~-~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
..++++.+.+.|++.|.+..-.|-+. ..+. .+++.+.+.+ .+|++++-+-.+.++ ++.+.++|||++++
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~----~~i~~i~~~~--~ipv~v~ggi~~~~~----~~~~l~~Gad~V~l 102 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAAFGRGSNH----ELLAEVVGKL--DVQVELSGGIRDDES----LAAALATGCARVNV 102 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH----HHHHHHHHHC--SSEEEEESSCCSHHH----HHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcCcccccCCChH----HHHHHHHHhc--CCcEEEECCCCCHHH----HHHHHHcCCCEEEE
Confidence 34556678899999999986554332 2333 5555666654 689999766555543 56666789999998
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia 180 (359)
..-.. .+++.+.+..+.+.
T Consensus 103 g~~~l--~~p~~~~~~~~~~g 121 (244)
T 2y88_A 103 GTAAL--ENPQWCARVIGEHG 121 (244)
T ss_dssp CHHHH--HCHHHHHHHHHHHG
T ss_pred CchHh--hChHHHHHHHHHcC
Confidence 64322 12344444444443
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=83.69 E-value=3.3 Score=38.77 Aligned_cols=113 Identities=10% Similarity=0.079 Sum_probs=81.4
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccC-ccC-----c--CCCCHHHHHHHHHHHHHhhCCCcEEEEec-
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGT-TGE-----G--QLMSWDEHIMLIGHTVNCFGASVKVIGNT- 134 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~Gs-tGE-----~--~~LT~~Er~~li~~~v~~~~grvpViagv- 134 (359)
..++|.+| ....++++ +.|++.+++.|+ .+- - -.+|.+|....++.+.+.+. .||++-.
T Consensus 19 i~~~~a~D-------~~sA~~~~---~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~--~PviaD~d 86 (295)
T 1xg4_A 19 LQIVGTIN-------ANHALLAQ---RAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCS--LPLLVDAD 86 (295)
T ss_dssp EEEEECSS-------HHHHHHHH---HTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCC--SCEEEECT
T ss_pred EEEecCcC-------HHHHHHHH---HcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCC--CCEEecCC
Confidence 34677775 33444444 589999999988 332 1 36899999999999888764 6999965
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCEEEEcCCC----C---C---CCCHHHHHHHHHHHHhc---CCeEEE
Q 018253 135 --GSNSTREAIHATEQGFAVGMHAALHINPY----Y---G---KTSLEGLISHFDSVLSM---GPTIIY 188 (359)
Q Consensus 135 --g~~st~~ai~la~~a~~~Gadav~v~pP~----y---~---~~s~~~l~~yf~~Ia~a---~PiiiY 188 (359)
.+.+..++.+.++...++||++|-+---. . . -.++++..+-.++..++ .+++|.
T Consensus 87 ~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~ 155 (295)
T 1xg4_A 87 IGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIM 155 (295)
T ss_dssp TCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEE
T ss_pred cccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 33489999999999999999999874322 1 1 14677777777777765 366655
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.66 E-value=2.5 Score=41.30 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++.+++.|++-|++..+.|- .+...++++.+.+.. .+||++| +. + .+.++.+.++|||++.+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~-----~~~~~e~I~~ik~~~--~i~Vi~g~V~--t----~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH-----SLNIIRTLKEIKSKM--NIDVIVGNVV--T----EEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS-----BHHHHHHHHHHHTTC--CCEEEEEEEC--S----HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-----cccHHHHHHHHHhcC--CCeEEEeecC--C----HHHHHHHHHcCCCEEEE
Confidence 46788889999998876555442 233455666655544 5899974 43 2 45667788899999998
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=83.62 E-value=13 Score=36.84 Aligned_cols=87 Identities=7% Similarity=-0.052 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHHHHHHHHHHHhh-----------------------------
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCF----------------------------- 124 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er~~li~~~v~~~----------------------------- 124 (359)
.+.+.+.++.+.+ ++++|-++-|. |--.....+.-.++++.+.+..
T Consensus 196 ~~dy~~~a~~l~~-~aD~ieiNiscPnt~Glr~lq~~~~l~~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~ 274 (443)
T 1tv5_A 196 VDDLKYCINKIGR-YADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFN 274 (443)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHhc-CCCEEEEeccCCCCcccccccCHHHHHHHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhccc
Confidence 5667777776654 89999998753 2112223344455666665532
Q ss_pred -------------------CCCcE-EEEecCC-CCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 125 -------------------GASVK-VIGNTGS-NSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 125 -------------------~grvp-Viagvg~-~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
..++| |++=+.. .+.++..+.++.+++.|+|++.+..-...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~ 336 (443)
T 1tv5_A 275 KNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 336 (443)
T ss_dssp -------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC
T ss_pred ccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 13578 8887664 45568999999999999999999987653
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=83.58 E-value=3.6 Score=44.92 Aligned_cols=83 Identities=6% Similarity=0.045 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccC---------cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGE---------GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE---------~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
-|.+.+.+.++.+.+.|+++|-++.+.-- ...-..+.-.++++.+.+.+ ++||++=+.. +..+..+.+
T Consensus 645 ~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~--~~Pv~vK~~~-~~~~~~~~a 721 (1025)
T 1gte_A 645 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV--QIPFFAKLTP-NVTDIVSIA 721 (1025)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC--SSCEEEEECS-CSSCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhh--CCceEEEeCC-ChHHHHHHH
Confidence 36788999999999999999999865311 11124455566777776655 5899986643 445788999
Q ss_pred HHHHhCCCCEEEEcC
Q 018253 147 EQGFAVGMHAALHIN 161 (359)
Q Consensus 147 ~~a~~~Gadav~v~p 161 (359)
+.+++.|+|++.+++
T Consensus 722 ~~~~~~G~d~i~v~N 736 (1025)
T 1gte_A 722 RAAKEGGADGVTATN 736 (1025)
T ss_dssp HHHHHHTCSEEEECC
T ss_pred HHHHHcCCCEEEEec
Confidence 999999999999964
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=83.56 E-value=4.1 Score=41.43 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
-.-|.+-+.++++.+.+.|++-|.+.-|.|= +++.+-.++++.+.+.++..+|+=++. +++..-++..+..|.++|
T Consensus 170 ~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~i~I~~H~-Hnd~GlAvAN~laAveAG 245 (539)
T 1rqb_A 170 PVHTVEGYVKLAGQLLDMGADSIALKDMAAL---LKPQPAYDIIKAIKDTYGQKTQINLHC-HSTTGVTEVSLMKAIEAG 245 (539)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEEETTCC---CCHHHHHHHHHHHHHHHCTTCCEEEEE-BCTTSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC---cCHHHHHHHHHHHHHhcCCCceEEEEe-CCCCChHHHHHHHHHHhC
Confidence 3468999999999999999999999999985 789999999999999886457776654 567788899999999999
Q ss_pred CCEEEEc-CCCCC---CCCHHHHHHHHH
Q 018253 154 MHAALHI-NPYYG---KTSLEGLISHFD 177 (359)
Q Consensus 154 adav~v~-pP~y~---~~s~~~l~~yf~ 177 (359)
||.|=.. .|+-. .++-+.++..++
T Consensus 246 a~~VD~ti~g~GertGN~~lE~lv~~L~ 273 (539)
T 1rqb_A 246 VDVVDTAISSMSLGPGHNPTESVAEMLE 273 (539)
T ss_dssp CSEEEEBCGGGCSTTSBCBHHHHHHHTT
T ss_pred CCEEEEeccccCCCccChhHHHHHHHHH
Confidence 9998554 34332 234455554443
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=83.21 E-value=4.4 Score=38.72 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc-------CcCC---------CC----HHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG-------EGQL---------MS----WDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG-------E~~~---------LT----~~Er~~li~~~v~~~~grvpViagvg 135 (359)
+|.+.+.+.++..-+.|++++-..-|+| +-.. || ..--.+++..+.+.+++++|||+.=|
T Consensus 204 ~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GG 283 (345)
T 3oix_A 204 FDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGG 283 (345)
T ss_dssp CCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESS
T ss_pred CCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 5888888888877777777665442222 1111 22 12225677777787877899997555
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCC-CCCCC
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINP-YYGKT 167 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP-~y~~~ 167 (359)
=.+.+++.+..+ +|||+|++-.. .|..|
T Consensus 284 I~s~~da~~~l~----aGAd~V~igra~~~~gP 312 (345)
T 3oix_A 284 VXTGRDAFEHIL----CGASMVQIGTALHQEGP 312 (345)
T ss_dssp CCSHHHHHHHHH----HTCSEEEESHHHHHHCT
T ss_pred CCChHHHHHHHH----hCCCEEEEChHHHhcCh
Confidence 567778777764 69999999988 44433
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=13 Score=35.28 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHH----HHHHhhC------C--CcEEEEecCCCCHHHHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIG----HTVNCFG------A--SVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~----~~v~~~~------g--rvpViagvg~~st~~ai~la~~a~ 150 (359)
++++.++++|++++.+.-+.| ..||.+...+.+. .+++.++ | .+|+|..+.+. .. +.....
T Consensus 201 ~~~~~~i~aGad~i~i~D~~~--~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~--~~---~l~~l~ 273 (367)
T 1r3s_A 201 PYLVGQVVAGAQALQLFESHA--GHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG--HF---ALEELA 273 (367)
T ss_dssp HHHHHHHHTTCSEEEEEETTG--GGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC--GG---GHHHHT
T ss_pred HHHHHHHHhCCCEEEEecCcc--ccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc--HH---HHHHHH
Confidence 345566789999999988887 4799988766542 2233333 3 58888876543 22 344667
Q ss_pred hCCCCEEEE
Q 018253 151 AVGMHAALH 159 (359)
Q Consensus 151 ~~Gadav~v 159 (359)
+.|+|++-+
T Consensus 274 ~~g~d~i~~ 282 (367)
T 1r3s_A 274 QAGYEVVGL 282 (367)
T ss_dssp TSSCSEEEC
T ss_pred hcCCCEEEe
Confidence 789996654
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.12 E-value=3.8 Score=36.51 Aligned_cols=77 Identities=6% Similarity=-0.004 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++++.+.+.|++.|.+..-++.+. ......++++.+.+.+ .+||+++-+-.+. +.++.+.+.|||++++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~~~--~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~----~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISATHE--ERAILLDVVARVAERV--FIPLTVGGGVRSL----EDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTT--CHHHHHHHHHHHHTTC--CSCEEEESSCCSH----HHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc--CccccHHHHHHHHHhC--CCCEEEECCcCCH----HHHHHHHHcCCCEEEE
Confidence 345667778889999988875543322 2334455566655543 6899987665554 3556666679999999
Q ss_pred cCCCC
Q 018253 160 INPYY 164 (359)
Q Consensus 160 ~pP~y 164 (359)
....+
T Consensus 104 g~~~l 108 (252)
T 1ka9_F 104 NSAAV 108 (252)
T ss_dssp CHHHH
T ss_pred ChHHH
Confidence 76555
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.99 E-value=21 Score=33.35 Aligned_cols=71 Identities=11% Similarity=-0.038 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHH----HHhhC--CCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT----VNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~----v~~~~--grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.++++.++++|++++.+.-+.|- .||.++..+++.-. ++.+. +.+|++..+.+. .. +.....+.|+|
T Consensus 182 ~~~~~~~~~aGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~--~~---~l~~l~~~g~d 254 (338)
T 2eja_A 182 LAYLKEQIKAGADVVQIFDSWVN--NLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGS--SS---FIDLAVDYRAD 254 (338)
T ss_dssp HHHHHHHHHTTCSEEEEEETTGG--GSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSH--HH---HHHHHTTSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCccc--cCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCc--HH---HHHHHHHcCCC
Confidence 33455667899999998887664 78998876554222 22221 247888776432 33 44456778999
Q ss_pred EEEE
Q 018253 156 AALH 159 (359)
Q Consensus 156 av~v 159 (359)
++.+
T Consensus 255 ~~~~ 258 (338)
T 2eja_A 255 ALSV 258 (338)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=82.95 E-value=0.96 Score=43.88 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=54.4
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++.+.+.|+++|.+.+..|-.. ..+ -.+++..+.+.++ .|||+.=|=.+..++.+.. .+|||+|++-
T Consensus 237 e~a~~a~~aGad~I~vs~~gg~~~d~~~~---~~~~l~~v~~~~~--~pVia~GGI~~~~dv~kal----~~GAdaV~iG 307 (380)
T 1p4c_A 237 EDADRCIAEGADGVILSNHGGRQLDCAIS---PMEVLAQSVAKTG--KPVLIDSGFRRGSDIVKAL----ALGAEAVLLG 307 (380)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSCTTCCC---GGGTHHHHHHHHC--SCEEECSSCCSHHHHHHHH----HTTCSCEEES
T ss_pred HHHHHHHHcCCCEEEEcCCCCCcCCCCcC---HHHHHHHHHHHcC--CeEEEECCCCCHHHHHHHH----HhCCcHhheh
Confidence 356778899999999966544211 111 1334445555554 3888744444566666544 4799999999
Q ss_pred CCCCCCC---CHHHHHHHHHHHHh
Q 018253 161 NPYYGKT---SLEGLISHFDSVLS 181 (359)
Q Consensus 161 pP~y~~~---s~~~l~~yf~~Ia~ 181 (359)
.|+++.. .++++.++.+.+.+
T Consensus 308 r~~l~~~~~~g~~~v~~~~~~l~~ 331 (380)
T 1p4c_A 308 RATLYGLAARGETGVDEVLTLLKA 331 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9987543 23444445444443
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=82.92 E-value=7 Score=34.58 Aligned_cols=168 Identities=13% Similarity=0.018 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCc---CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG---QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~---~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
.|+..+.+.++.+.+.|++-+-+----|.| .+... ++++...+.. +.|+.+++--++.. ++++.+.++
T Consensus 16 ~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~----~~~~~lr~~~--~~~~~v~lmv~d~~---~~i~~~~~a 86 (228)
T 1h1y_A 16 SDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGA----PVIQSLRKHT--KAYLDCHLMVTNPS---DYVEPLAKA 86 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCH----HHHHHHHTTC--CSEEEEEEESSCGG---GGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCH----HHHHHHHhhc--CCcEEEEEEecCHH---HHHHHHHHc
Confidence 347788889999999999975333122322 22223 4555555544 35777666555543 356667779
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc---CCCeEEE--------eccCc
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGV--------KECVG 220 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~---~pnivGi--------K~ss~ 220 (359)
|+|++.+..=. +++.+.+..+.+.+. ..+++==.|. | +.+.++.+.+ ....+++ +....
T Consensus 87 gad~v~vH~~~----~~~~~~~~~~~i~~~g~~igv~~~p~-t----~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~ 157 (228)
T 1h1y_A 87 GASGFTFHIEV----SRDNWQELIQSIKAKGMRPGVSLRPG-T----PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFM 157 (228)
T ss_dssp TCSEEEEEGGG----CTTTHHHHHHHHHHTTCEEEEEECTT-S----CGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCC
T ss_pred CCCEEEECCCC----cccHHHHHHHHHHHcCCCEEEEEeCC-C----CHHHHHHHHhcCCCCCEEEEEeecCCCCcccCC
Confidence 99999765211 111124555666544 3444322342 1 2344555554 4555555 11101
Q ss_pred -h--hh---Hhhhh-CCceEEEecCCchhhhhhhhcCCceeecccccc
Q 018253 221 -N--DR---VEHYT-GNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 221 -d--~~---l~~~~-~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
. .+ +++.. +-.+.+-.|-...-.......|+|+++.|.+-+
T Consensus 158 ~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~ 205 (228)
T 1h1y_A 158 PEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIF 205 (228)
T ss_dssp GGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHH
Confidence 1 12 22333 223444456654444444677999999886643
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=82.83 E-value=33 Score=32.78 Aligned_cols=145 Identities=8% Similarity=-0.021 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
.+.+.+.+.+...++.|.+++=+-...+ +.++=.++++.+.+.++.++++.+-+ ++.+.++++++++..++.|+
T Consensus 161 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~-----~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 235 (393)
T 2og9_A 161 TPIDQLMVNASASIERGIGGIKLKVGQP-----DGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNL 235 (393)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECCCS-----CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC-----CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4788999999999999999887643321 35666778888888888889998865 45689999999999999998
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccC--chh---hHh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECV--GND---RVE 225 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss--~d~---~l~ 225 (359)
+.+ --|.- ..+ .+.++.|.+. .||+.=. .-.+++.++++.+ .-+++.+|-+- +-. ++.
T Consensus 236 ~~i--E~P~~-~~~----~~~~~~l~~~~~iPIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~ 302 (393)
T 2og9_A 236 VWI--EEPLD-AYD----HEGHAALALQFDTPIATGE------MLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIA 302 (393)
T ss_dssp SCE--ECCSC-TTC----HHHHHHHHHHCSSCEEECT------TCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHH
T ss_pred CEE--ECCCC-ccc----HHHHHHHHHhCCCCEEeCC------CcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHH
Confidence 854 34432 112 4555666665 5776543 2346888888863 56889999653 222 333
Q ss_pred hhh-CCceEEEecC
Q 018253 226 HYT-GNGIVVWSGN 238 (359)
Q Consensus 226 ~~~-~~~~~v~~G~ 238 (359)
+++ .-++.++.+.
T Consensus 303 ~~A~~~gi~~~~h~ 316 (393)
T 2og9_A 303 SLAEHAGLMLAPHF 316 (393)
T ss_dssp HHHHHTTCEECCCS
T ss_pred HHHHHcCCEEeccC
Confidence 332 2456666553
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=82.81 E-value=19 Score=32.15 Aligned_cols=124 Identities=10% Similarity=-0.013 Sum_probs=75.2
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-c-----------------CCC-------
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-T-----------------GSN------- 137 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-v-----------------g~~------- 137 (359)
..++.+.+.|.+||=+...... .++.++..++.+.+.+ . .+.+.+. + ++.
T Consensus 25 ~~l~~~~~~G~~~vEl~~~~~~--~~~~~~~~~~~~~l~~-~--gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~ 99 (290)
T 3tva_A 25 VHLEVAQDLKVPTVQVHAPHPH--TRTREHAQAFRAKCDA-A--GIQVTVIFGGFDGESYADIPTTARTVGLVPLETRAS 99 (290)
T ss_dssp BCHHHHHHTTCSEEEEECCCGG--GCSHHHHHHHHHHHHH-T--TCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHH
T ss_pred HHHHHHHHcCCCEEEecCCCCC--cCCHHHHHHHHHHHHH-c--CCEEEEEeeccCCcccccccccccccCCCCHHHHHH
Confidence 4677888899999887764332 4676666666655443 3 3444332 1 111
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCC---HHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTS---LEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVIHTMAQ- 208 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s---~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~l~~La~- 208 (359)
+.+...+.++.|+++|+..+.+.+.+....+ .+.+.+.++.+++. +.+.+-|.+ -+++.+.+|.+
T Consensus 100 ~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~------~~~~~~~~l~~~ 173 (290)
T 3tva_A 100 RVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQ------ESADHLLEFIED 173 (290)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCS------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCC------CCHHHHHHHHHh
Confidence 2345567777888999999988765442212 34566667777652 356677754 25777777763
Q ss_pred --CCCeEEEec
Q 018253 209 --SPNLAGVKE 217 (359)
Q Consensus 209 --~pnivGiK~ 217 (359)
.|++.-.=|
T Consensus 174 ~~~~~~g~~~D 184 (290)
T 3tva_A 174 VNRPNLGINFD 184 (290)
T ss_dssp HCCTTEEEEEC
T ss_pred cCCCCEEEEec
Confidence 477544334
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=24 Score=32.74 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.++.+.+.+.++.+.+.|+..|++. .||.+.+..+.-.++++.+.+. .+.|-+..+..+ . +..+..+++|+
T Consensus 83 ~ls~eei~~~i~~~~~~g~~~i~~~--gGe~p~~~~~~~~~li~~i~~~---~~~i~~s~g~l~-~---e~l~~L~~ag~ 153 (348)
T 3iix_A 83 RMTPEEIVERARLAVQFGAKTIVLQ--SGEDPYXMPDVISDIVKEIKKM---GVAVTLSLGEWP-R---EYYEKWKEAGA 153 (348)
T ss_dssp BCCHHHHHHHHHHHHHTTCSEEEEE--ESCCGGGTTHHHHHHHHHHHTT---SCEEEEECCCCC-H---HHHHHHHHHTC
T ss_pred eCCHHHHHHHHHHHHHCCCCEEEEE--eCCCCCccHHHHHHHHHHHHhc---CceEEEecCCCC-H---HHHHHHHHhCC
Confidence 3678888888888888899988874 4787777777778888777654 456665555433 3 33444555788
Q ss_pred CEEEEcCCCCC---------CCCHHHHHHHHHHHHhc
Q 018253 155 HAALHINPYYG---------KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 155 dav~v~pP~y~---------~~s~~~l~~yf~~Ia~a 182 (359)
|.+.+..-.+. ..+.+.+.+-.+.+.+.
T Consensus 154 ~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~ 190 (348)
T 3iix_A 154 DRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL 190 (348)
T ss_dssp CEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT
T ss_pred CEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh
Confidence 88775432221 12455555555555554
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=4.9 Score=38.00 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHCC--CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 83 DLVNMQIVNG--AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 83 ~li~~li~~G--v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
+.++.+++.| ++.+.++.+.| ....-.++++.+++.++ ..||+.| +. + .+.++.+.++|||++.+
T Consensus 109 ~~a~~~~~~g~~~~~i~i~~~~G-----~~~~~~~~i~~lr~~~~-~~~vi~G~v~--s----~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 109 EFVQQLAAEHLTPEYITIDIAHG-----HSNAVINMIQHIKKHLP-ESFVIAGNVG--T----PEAVRELENAGADATKV 176 (336)
T ss_dssp HHHHHHHHTTCCCSEEEEECSSC-----CSHHHHHHHHHHHHHCT-TSEEEEEEEC--S----HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhcCCCCCEEEEECCCC-----CcHHHHHHHHHHHHhCC-CCEEEECCcC--C----HHHHHHHHHcCCCEEEE
Confidence 4467788999 89887765444 33455667887777765 3688877 43 2 36788889999999999
Q ss_pred cC
Q 018253 160 IN 161 (359)
Q Consensus 160 ~p 161 (359)
..
T Consensus 177 s~ 178 (336)
T 1ypf_A 177 GI 178 (336)
T ss_dssp CS
T ss_pred ec
Confidence 53
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=82.48 E-value=25 Score=32.19 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~ 151 (359)
.|.-..+.-..-++..++.|++-|=+-=.-|..-+=.+++-.+-+..+++..++ -++||.-++..+.++-++.++.+.+
T Consensus 105 ~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~e 184 (260)
T 3r12_A 105 LGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKL 184 (260)
T ss_dssp TCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 555566777777888888898887666666654444566666666666666554 3677887777778888888888888
Q ss_pred CCCCEEEEcCCCCC-CCCHHHHHHH
Q 018253 152 VGMHAALHINPYYG-KTSLEGLISH 175 (359)
Q Consensus 152 ~Gadav~v~pP~y~-~~s~~~l~~y 175 (359)
+|||.|=...=|.. ..+.+++.-+
T Consensus 185 aGADfVKTSTGf~~~GAT~edV~lm 209 (260)
T 3r12_A 185 AGAHFVKTSTGFGTGGATAEDVHLM 209 (260)
T ss_dssp TTCSEEECCCSSSSCCCCHHHHHHH
T ss_pred hCcCEEEcCCCCCCCCCCHHHHHHH
Confidence 99987766644332 2355544333
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=82.34 E-value=23 Score=32.18 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec----CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT----GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv----g~~st~~ai~la~~a 149 (359)
+.+.+...++++..++.| ++-+=+ |...-. ...++++.+. .++++||+.- +..+.++.+++.+++
T Consensus 96 ~~~~~~~~~ll~~~~~~g~~d~iDv-----El~~~~--~~~~l~~~~~---~~~~kvI~S~Hdf~~tP~~~el~~~~~~~ 165 (257)
T 2yr1_A 96 PLNEAEVRRLIEAICRSGAIDLVDY-----ELAYGE--RIADVRRMTE---ECSVWLVVSRHYFDGTPRKETLLADMRQA 165 (257)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEE-----EGGGTT--HHHHHHHHHH---HTTCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEE-----ECCCCh--hHHHHHHHHH---hCCCEEEEEecCCCCCcCHHHHHHHHHHH
Confidence 457777777777777766 666555 332211 3334443332 2456777754 234667788888888
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHH---HHHh--cCCeEEEeCC
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFD---SVLS--MGPTIIYNVP 191 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~---~Ia~--a~PiiiYn~P 191 (359)
++.|||-+=+.... .+.++..+-++ .+.+ ..|++.|+.-
T Consensus 166 ~~~gaDivKia~~a---~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG 209 (257)
T 2yr1_A 166 ERYGADIAKVAVMP---KSPEDVLVLLQATEEARRELAIPLITMAMG 209 (257)
T ss_dssp HHTTCSEEEEEECC---SSHHHHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred HhcCCCEEEEEecc---CCHHHHHHHHHHHHHHhccCCCCEEEEECC
Confidence 88888877333222 23444444443 3321 1588888753
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=82.26 E-value=4.4 Score=36.28 Aligned_cols=171 Identities=13% Similarity=0.013 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCc-CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~-~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
..|+..+.+-++.+.+.|++-+-+==.-|-| +.+|. -..+++...+..+.++|+-++.--++.++ +.+.+.++|
T Consensus 13 ~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~--G~~~v~~ir~~~~~~~~~dvhLmv~~p~~---~i~~~~~aG 87 (228)
T 3ovp_A 13 NSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITF--GHPVVESLRKQLGQDPFFDMHMMVSKPEQ---WVKPMAVAG 87 (228)
T ss_dssp TSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCB--CHHHHHHHHHHHCSSSCEEEEEECSCGGG---GHHHHHHHT
T ss_pred eCCchhHHHHHHHHHHcCCCEEEEEecCCCcCccccc--CHHHHHHHHHhhCCCCcEEEEEEeCCHHH---HHHHHHHcC
Confidence 5788899999999999999866652222333 22331 22366666666534567777665555554 556677899
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcC----------CCeEEEeccCch-
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQS----------PNLAGVKECVGN- 221 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~----------pnivGiK~ss~d- 221 (359)
||.+.+.. -.. +.+.+..+.+-+. ..+.+==+|. | +.+.++.+.+. |.+-|-|.....
T Consensus 88 ad~itvH~---Ea~--~~~~~~i~~i~~~G~k~gval~p~-t----~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l 157 (228)
T 3ovp_A 88 ANQYTFHL---EAT--ENPGALIKDIRENGMKVGLAIKPG-T----SVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMM 157 (228)
T ss_dssp CSEEEEEG---GGC--SCHHHHHHHHHHTTCEEEEEECTT-S----CGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGH
T ss_pred CCEEEEcc---CCc--hhHHHHHHHHHHcCCCEEEEEcCC-C----CHHHHHHHhccCCeEEEeeecCCCCCcccCHHHH
Confidence 99988852 111 2355555555554 2333323342 1 23444444432 333333321111
Q ss_pred hhH---hhhh-CCceEEEecCCchhhhhhhhcCCceeeccccc
Q 018253 222 DRV---EHYT-GNGIVVWSGNDDQCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 222 ~~l---~~~~-~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an 260 (359)
.++ ++.. +-.+.|=.|-..........+|+++++.|.+-
T Consensus 158 ~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaI 200 (228)
T 3ovp_A 158 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200 (228)
T ss_dssp HHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHH
T ss_pred HHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHH
Confidence 122 2222 12344545554444455578999999998653
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=82.24 E-value=7.9 Score=37.10 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC----------------------------------------cCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE----------------------------------------GQLMSWDEHIML 116 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE----------------------------------------~~~LT~~Er~~l 116 (359)
|.+..++++++-.++|+.+|++.--+-- -..+|++.
T Consensus 133 d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~---- 208 (352)
T 3sgz_A 133 DWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWND---- 208 (352)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHH----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHH----
Confidence 7788999999999999999887543311 13455553
Q ss_pred HHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 117 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 117 i~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
++.+++.+ ++||++ ++ .+ .+.++.+.++|+|++.+...
T Consensus 209 i~~lr~~~--~~PvivK~v--~~----~e~A~~a~~~GaD~I~vsn~ 247 (352)
T 3sgz_A 209 LSLLQSIT--RLPIILKGI--LT----KEDAELAMKHNVQGIVVSNH 247 (352)
T ss_dssp HHHHHHHC--CSCEEEEEE--CS----HHHHHHHHHTTCSEEEECCG
T ss_pred HHHHHHhc--CCCEEEEec--Cc----HHHHHHHHHcCCCEEEEeCC
Confidence 55555554 578877 45 23 45688899999999999863
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=82.15 E-value=5 Score=37.05 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=49.4
Q ss_pred CCce-EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRL-ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIV---GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi-~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v---~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv 134 (359)
-.|+ ...+++|-+. .+.+++..+. ..|. +++ .|+||+-..++ ++-.++++.+.+.. ++||++|.
T Consensus 148 ~~gl~~I~lvap~t~-----~eri~~i~~~--~~gf--iY~vs~~GvTG~~~~~~-~~~~~~v~~vr~~~--~~Pv~vGf 215 (271)
T 3nav_A 148 KFGIQPIFIAPPTAS-----DETLRAVAQL--GKGY--TYLLSRAGVTGAETKAN-MPVHALLERLQQFD--APPALLGF 215 (271)
T ss_dssp HTTCEEEEEECTTCC-----HHHHHHHHHH--CCSC--EEECCCC--------CC-HHHHHHHHHHHHTT--CCCEEECS
T ss_pred HcCCeEEEEECCCCC-----HHHHHHHHHH--CCCe--EEEEeccCCCCcccCCc-hhHHHHHHHHHHhc--CCCEEEEC
Confidence 3454 3456677553 2444444432 2232 443 48899987776 44667788877765 58999998
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
|=.+.+++ +.+.+.|||++++-.=.+
T Consensus 216 GIst~e~~----~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 216 GISEPAQV----KQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp SCCSHHHH----HHHHHTTCSEEEESHHHH
T ss_pred CCCCHHHH----HHHHHcCCCEEEECHHHH
Confidence 86555443 345568999999975433
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.06 E-value=2.9 Score=37.67 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
....++.+.+.|++.|.+..-.+.+.... .-.++++.+.+.. .+||+++-+-.+.++ ++.+.+.|||++++.
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g--~~~~~i~~i~~~~--~iPvi~~ggi~~~~~----i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSG--YDTEMIRFVRPLT--TLPIIASGGAGKMEH----FLEAFLAGADKALAA 103 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSC--CCHHHHHHHGGGC--CSCEEEESCCCSTHH----HHHHHHHTCSEEECC
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCc--ccHHHHHHHHHhc--CCCEEEECCCCCHHH----HHHHHHcCCcHhhhh
Confidence 45567777889999999865433221111 1134444544443 689999866555554 344456899999998
Q ss_pred CCCC-CCCCHHHHHHHHH
Q 018253 161 NPYY-GKTSLEGLISHFD 177 (359)
Q Consensus 161 pP~y-~~~s~~~l~~yf~ 177 (359)
...+ ...+.+.+.+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~ 121 (266)
T 2w6r_A 104 SVFHFREIDMRELKEYLK 121 (266)
T ss_dssp CCC------CHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 7777 3223344554443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.93 E-value=36 Score=32.35 Aligned_cols=124 Identities=9% Similarity=0.005 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
-|.+.+.+.+....+.|.+++=+-... ..++-.++++.+++.++ ++++.+-+ ++.+.++++++++..++.|+
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~------~~~~~~e~v~avr~a~g-d~~l~vD~n~~~~~~~a~~~~~~l~~~~i 218 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGR------GEKLDLEITAAVRGEIG-DARLRLDANEGWSVHDAINMCRKLEKYDI 218 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCS------CHHHHHHHHHHHHTTST-TCEEEEECTTCCCHHHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCC------CHHHHHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhcCC
Confidence 477889899999999999998775432 56666788888888887 88988855 45689999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccC
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECV 219 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss 219 (359)
+.+ --|+ ...+ .+.+++|.+. .||+.=. .-.+++.+.++.+ .-+++.+|-+-
T Consensus 219 ~~i--EqP~-~~~~----~~~~~~l~~~~~iPI~~de------~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 219 EFI--EQPT-VSWS----IPAMAHVREKVGIPIVADQ------AAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp SEE--ECCS-CTTC----HHHHHHHHHHCSSCEEEST------TCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CEE--eCCC-Chhh----HHHHHHHHhhCCCCEEEeC------CcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 854 4554 1112 4556666664 5776432 2347888998873 57899999753
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=81.92 E-value=18 Score=31.78 Aligned_cols=133 Identities=8% Similarity=-0.045 Sum_probs=73.6
Q ss_pred HHHHHHHHHHCCCCEEEEc-cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-Eec----CCCC-------HHHHHHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNT----GSNS-------TREAIHATE 147 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~-GstGE~~~LT~~Er~~li~~~v~~~~grvpVi-agv----g~~s-------t~~ai~la~ 147 (359)
+...++.+.+.|.+||=+. ..... ..++.++..++ +...+.. .+.+. ++. .+.+ .+...+.++
T Consensus 16 ~~~~l~~~~~~G~~~vEl~~~~~~~-~~~~~~~~~~~-~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (278)
T 1i60_A 16 LKLDLELCEKHGYDYIEIRTMDKLP-EYLKDHSLDDL-AEYFQTH--HIKPLALNALVFFNNRDEKGHNEIITEFKGMME 91 (278)
T ss_dssp HHHHHHHHHHTTCSEEEEETTTHHH-HHTTSSCHHHH-HHHHHTS--SCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEccHHHHH-HHhccCCHHHH-HHHHHHc--CCCeeeeccccccccCCHHHHHHHHHHHHHHHH
Confidence 5667777788999998876 43211 01122222233 3333333 34443 222 2112 345667778
Q ss_pred HHHhCCCCEEEEcCCCCCC-CC-H---HHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHHHHHhc---CCCeEE
Q 018253 148 QGFAVGMHAALHINPYYGK-TS-L---EGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVIHTMAQ---SPNLAG 214 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~-~s-~---~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~l~~La~---~pnivG 214 (359)
.|+++|++.+.+.+++... .+ + +.+.+.++.+++. +.+.+-|.+......-+++.+.+|.+ .|++.-
T Consensus 92 ~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 171 (278)
T 1i60_A 92 TCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGL 171 (278)
T ss_dssp HHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTTEEE
T ss_pred HHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHHHhCCCCeeE
Confidence 8899999999886554322 23 2 3456666666542 46788887643213346777777763 467543
Q ss_pred Eec
Q 018253 215 VKE 217 (359)
Q Consensus 215 iK~ 217 (359)
.=|
T Consensus 172 ~~D 174 (278)
T 1i60_A 172 VLD 174 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.85 E-value=6.7 Score=35.78 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
.+++.+.+. ++.+++.+-+-|+..--. -.++++.+.+.+. +.+|||++=+-.+.++..++.+.. -|++++++-
T Consensus 162 e~a~~~~~~-a~~il~t~i~~dG~~~G~--d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~--~G~~gvivg 236 (260)
T 2agk_A 162 DTFRELRKY-TNEFLIHAADVEGLCGGI--DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELS--HGKVDLTFG 236 (260)
T ss_dssp HHHHHHTTT-CSEEEEEC-------CCC--CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHH--TTCEEEECC
T ss_pred HHHHHHHHh-cCEEEEEeeccccCcCCC--CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhc--CCCCEEEee
Confidence 556666677 899999876654443221 2455666666663 268999977777888887776642 299999999
Q ss_pred CC---CCCC-CCHHHHHHHHHH
Q 018253 161 NP---YYGK-TSLEGLISHFDS 178 (359)
Q Consensus 161 pP---~y~~-~s~~~l~~yf~~ 178 (359)
.- |+.+ .+-+++.+|-++
T Consensus 237 ~al~l~~g~~~~~~~~~~~~~~ 258 (260)
T 2agk_A 237 SSLDIFGGNLVKFEDCCRWNEK 258 (260)
T ss_dssp TTBGGGTCSSBCHHHHHHHHHH
T ss_pred CCHHHcCCCCCCHHHHHHHHHh
Confidence 88 5566 688888887653
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=81.84 E-value=1.6 Score=38.88 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC---CCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV---GMH 155 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~---Gad 155 (359)
....++.+.+.|++.|++.+.+-++. ....+ +++.+.+.. ++||++.=|-.+.+++.++ .+. |+|
T Consensus 151 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~----~~~~l~~~~--~ipvia~GGI~~~~d~~~~----~~~~~~Gad 220 (244)
T 2y88_A 151 LWDVLERLDSEGCSRFVVTDITKDGTLGGPNLD----LLAGVADRT--DAPVIASGGVSSLDDLRAI----ATLTHRGVE 220 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHH----HHHHHHTTC--SSCEEEESCCCSHHHHHHH----HTTGGGTEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCccccCCCCHH----HHHHHHHhC--CCCEEEECCCCCHHHHHHH----HhhccCCCC
Confidence 35566677788999999888554433 23333 344444433 6899985444445655554 335 999
Q ss_pred EEEEcCCCCCCC-CHHHHHHHH
Q 018253 156 AALHINPYYGKT-SLEGLISHF 176 (359)
Q Consensus 156 av~v~pP~y~~~-s~~~l~~yf 176 (359)
++++..-.|..+ +.+++.+|.
T Consensus 221 ~v~vG~al~~~~~~~~~~~~~~ 242 (244)
T 2y88_A 221 GAIVGKALYARRFTLPQALAAV 242 (244)
T ss_dssp EEEECHHHHTTSSCHHHHHHHT
T ss_pred EEEEcHHHHCCCcCHHHHHHHh
Confidence 999997766544 566666653
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=81.83 E-value=1.7 Score=41.06 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=61.1
Q ss_pred HHHHHHHCCCCEEEEcc-----CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 84 LVNMQIVNGAEGMIVGG-----TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~G-----stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
.+..+.+.|+|+|++-| .+|+. . -.+++..+++.+ ++|||+.=|=.+.++..+.. ++|||+|+
T Consensus 136 ~a~~a~~~GaD~i~v~g~~~GG~~G~~---~---~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~al----~~GA~gV~ 203 (326)
T 3bo9_A 136 LARMVERAGADAVIAEGMESGGHIGEV---T---TFVLVNKVSRSV--NIPVIAAGGIADGRGMAAAF----ALGAEAVQ 203 (326)
T ss_dssp HHHHHHHTTCSCEEEECTTSSEECCSS---C---HHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHH----HHTCSEEE
T ss_pred HHHHHHHcCCCEEEEECCCCCccCCCc---c---HHHHHHHHHHHc--CCCEEEECCCCCHHHHHHHH----HhCCCEEE
Confidence 45567789999999944 33532 2 234555555554 68998743333455554433 37999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC-CCCCCCCCHHHHHHHh
Q 018253 159 HINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP-SRTGQDIPPRVIHTMA 207 (359)
Q Consensus 159 v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P-~~tg~~ls~e~l~~La 207 (359)
+...++..+....-..|=+.+.++ ..+++-..+ ++.+..|......++.
T Consensus 204 vGs~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~~G~p~R~l~n~~~~~~~ 255 (326)
T 3bo9_A 204 MGTRFVASVESDVHPVYKEKIVKASIRDTVVTGAKLGHPARVLRTPFARKIQ 255 (326)
T ss_dssp ESHHHHTBSSCCSCHHHHHHHHHCCTTCEEEECTTTTCCEEEECCHHHHHHH
T ss_pred echHHHcCccccccHHHHHHHHhcccccEEEecccCCCceEEEecHHHHHhh
Confidence 999887653211222233334344 244443322 2333345555555544
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.74 E-value=6 Score=36.77 Aligned_cols=118 Identities=13% Similarity=0.006 Sum_probs=78.5
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH---HHHHHHHHHHHhhCC-CcEEEEecCC
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD---EHIMLIGHTVNCFGA-SVKVIGNTGS 136 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~---Er~~li~~~v~~~~g-rvpViagvg~ 136 (359)
++-.+.++-| +.|.-..+.-..-++.-++.|++-|=+.-.-|..-+=.++ +-.+-+..+++.+++ -++||.-++-
T Consensus 89 ~v~v~tVigF-P~G~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~ 167 (281)
T 2a4a_A 89 KPKIACVINF-PYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGE 167 (281)
T ss_dssp CSEEEEEEST-TTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHH
T ss_pred CceEEEEeCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEeccc
Confidence 3445556777 5777888888888999999999998666666643322234 445555555555543 2456888877
Q ss_pred CCHHH-HHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHH
Q 018253 137 NSTRE-AIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSV 179 (359)
Q Consensus 137 ~st~~-ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~I 179 (359)
.+.++ ....++.+.++|||.|=..+=|. ...+.+++.-+-+.+
T Consensus 168 L~d~e~i~~A~~ia~eaGADfVKTSTGf~~~gAT~edv~lm~~~v 212 (281)
T 2a4a_A 168 LKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATPSSVEYIIKAI 212 (281)
T ss_dssp HCSHHHHHHHHHHHHTTTCSEEECCCSCSSCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 77677 45888999999999887765554 345656554444444
|
| >3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.73 E-value=3.5 Score=36.80 Aligned_cols=136 Identities=8% Similarity=0.018 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-e----------cCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N----------TGSNSTREAIHA 145 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-g----------vg~~st~~ai~l 145 (359)
|.+...+.++.+++.+++|+++.+...+...-..+ .++.+.+ .++||+. + |+....+.....
T Consensus 56 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~----~~~~~~~---~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a 128 (298)
T 3tb6_A 56 NPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG----YYLNLEK---NGIPFAMINASYAELAAPSFTLDDVKGGMMA 128 (298)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH----HHHHHHH---TTCCEEEESSCCTTCSSCEEEECHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH----HHHHHHh---cCCCEEEEecCcCCCCCCEEEeCcHHHHHHH
Confidence 66778899999999999999999877654433333 2333222 2567653 2 223345567778
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CC---eEEEeCCCCCCCCCCHHHHHHHh-cCCC--eEEEecc
Q 018253 146 TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GP---TIIYNVPSRTGQDIPPRVIHTMA-QSPN--LAGVKEC 218 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~P---iiiYn~P~~tg~~ls~e~l~~La-~~pn--ivGiK~s 218 (359)
+++..+.|...+.++...-...+.+-...|.+.+.+. .+ ..+...+......-..+.+.++. ++|. +.+|=-.
T Consensus 129 ~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 208 (298)
T 3tb6_A 129 AEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCY 208 (298)
T ss_dssp HHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECS
T ss_pred HHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEe
Confidence 8888889987665553222122233344444555544 32 12222211111110135566665 5776 7777544
Q ss_pred C
Q 018253 219 V 219 (359)
Q Consensus 219 s 219 (359)
+
T Consensus 209 ~ 209 (298)
T 3tb6_A 209 N 209 (298)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=81.70 E-value=4.8 Score=42.30 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+..|.+-+.++++.+++.|++-|.+.-|.| .+++.+-.++++.+.+.++ ++||=+++ +++..-++..+-.|.++|
T Consensus 256 ~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G---~~~P~~v~~lV~~lk~~~p-~~~I~~H~-Hnd~GlAvANslaAveAG 330 (718)
T 3bg3_A 256 TKYSLQYYMGLAEELVRAGTHILCIKDMAG---LLKPTACTMLVSSLRDRFP-DLPLHIHT-HDTSGAGVAAMLACAQAG 330 (718)
T ss_dssp CTTCHHHHHHHHHHHHHHTCSEEEEECTTS---CCCHHHHHHHHHHHHHHST-TCCEEEEC-CCTTSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCcCC---CcCHHHHHHHHHHHHHhCC-CCeEEEEE-CCCccHHHHHHHHHHHhC
Confidence 357999999999999999999999999999 5789999999999998885 56776655 567888999999999999
Q ss_pred CCEEEEcCC-CC---CCCCHHHHHHHHHH
Q 018253 154 MHAALHINP-YY---GKTSLEGLISHFDS 178 (359)
Q Consensus 154 adav~v~pP-~y---~~~s~~~l~~yf~~ 178 (359)
||.+=..-- +- ..++-++++..++.
T Consensus 331 a~~VD~ti~GlGertGN~~lE~vv~~L~~ 359 (718)
T 3bg3_A 331 ADVVDVAADSMSGMTSQPSMGALVACTRG 359 (718)
T ss_dssp CSEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred CCEEEecCcccccccCchhHHHHHHHHHh
Confidence 999966543 22 23455666665543
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=81.70 E-value=17 Score=33.93 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecCC-----CCHHHHHHHHHHHHhCCCCEE
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGS-----NSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg~-----~st~~ai~la~~a~~~Gadav 157 (359)
-++..++.|++++-+-...|. =...+..+-+..+++.+ ...+|+|+-..- .+.+-....++.|.++|||.|
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs---~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~V 206 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGS---EYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQII 206 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTS---TTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHCCCCEEEEEEECCC---CcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEE
Confidence 456677899999887777662 23444444444555544 335888873211 233334458888889999976
Q ss_pred EEc
Q 018253 158 LHI 160 (359)
Q Consensus 158 ~v~ 160 (359)
=..
T Consensus 207 Kt~ 209 (295)
T 3glc_A 207 KTY 209 (295)
T ss_dssp EEE
T ss_pred EeC
Confidence 654
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=27 Score=33.48 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccC----ccC-----------cCCC---CHHHHHHHHHHHHHhhCCCcEEEEec
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGT----TGE-----------GQLM---SWDEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~Gs----tGE-----------~~~L---T~~Er~~li~~~v~~~~grvpViagv 134 (359)
+...+.+.+.+.+....+.|.+++=+-.. .|- +-+. ..++=.++++.+++.++.++++++-+
T Consensus 146 ~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDa 225 (410)
T 2gl5_A 146 HILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEI 225 (410)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 44578999999999999999999876531 131 1122 23445677888888888889999865
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--C
Q 018253 135 -GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--S 209 (359)
Q Consensus 135 -g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~ 209 (359)
++.+.++++++++..++.|.+. +--|.- ..+ .+.+++|.+. .||+.=. .-.+++.++++.+ .
T Consensus 226 n~~~~~~~ai~~~~~l~~~~i~~--iE~P~~-~~~----~~~~~~l~~~~~iPIa~dE------~~~~~~~~~~~i~~~~ 292 (410)
T 2gl5_A 226 HSLLGTNSAIQFAKAIEKYRIFL--YEEPIH-PLN----SDNMQKVSRSTTIPIATGE------RSYTRWGYRELLEKQS 292 (410)
T ss_dssp TTCSCHHHHHHHHHHHGGGCEEE--EECSSC-SSC----HHHHHHHHHHCSSCEEECT------TCCTTHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCe--EECCCC-hhh----HHHHHHHHhhCCCCEEecC------CcCCHHHHHHHHHcCC
Confidence 4568999999999999988764 444532 112 4556667665 5776643 1235678888873 5
Q ss_pred CCeEEEeccC--chh---hHhhhh-CCceEEEecC
Q 018253 210 PNLAGVKECV--GND---RVEHYT-GNGIVVWSGN 238 (359)
Q Consensus 210 pnivGiK~ss--~d~---~l~~~~-~~~~~v~~G~ 238 (359)
-+++-+|-+- +-. ++.++. .-++.++.+.
T Consensus 293 ~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~ 327 (410)
T 2gl5_A 293 IAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHV 327 (410)
T ss_dssp CSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCC
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeEeecC
Confidence 6889999753 222 333332 3455655543
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=81.62 E-value=8.6 Score=38.26 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
+-.-|.+-+.++++.+.+.|++-|.+.-|+|= +++.+-.++++.+.+.+ .+|+=+++ +++..-++..+-.|.++
T Consensus 152 ~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~---~~P~~v~~lv~~l~~~~--~~~i~~H~-Hnd~GlAvAN~laAv~A 225 (464)
T 2nx9_A 152 SPVHNLQTWVDVAQQLAELGVDSIALKDMAGI---LTPYAAEELVSTLKKQV--DVELHLHC-HSTAGLADMTLLKAIEA 225 (464)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCSEEEEEETTSC---CCHHHHHHHHHHHHHHC--CSCEEEEE-CCTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCC---cCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCChHHHHHHHHHHh
Confidence 34569999999999999999999999999986 68999999999999887 46776655 56778889999999999
Q ss_pred CCCEEEEc-CCCC---CCCCHHHHHHHHHH
Q 018253 153 GMHAALHI-NPYY---GKTSLEGLISHFDS 178 (359)
Q Consensus 153 Gadav~v~-pP~y---~~~s~~~l~~yf~~ 178 (359)
||+.+=.. .|+- ..++-++++..++.
T Consensus 226 Ga~~VD~ti~g~gertGN~~lE~lv~~L~~ 255 (464)
T 2nx9_A 226 GVDRVDTAISSMSGTYGHPATESLVATLQG 255 (464)
T ss_dssp TCSEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred CCCEEEEeccccCCCCcCHHHHHHHHHHHh
Confidence 99998554 3433 23455666666653
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=81.40 E-value=2.5 Score=36.73 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCEEEEc-cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~-GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...++...+.|++.+.+. |.+|....-+. .+.++.+.+.. +++||+++-|= +. +.++.+.++|||++++.
T Consensus 117 ~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~---~~~i~~l~~~~-~~~~i~~~gGI-~~----~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 117 PARVRLLEEAGADMLAVHTGTDQQAAGRKP---IDDLITMLKVR-RKARIAVAGGI-SS----QTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHHHHHHHHHTCCEEEEECCHHHHHTTCCS---HHHHHHHHHHC-SSCEEEEESSC-CT----TTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCcccccCCCC---HHHHHHHHHHc-CCCcEEEECCC-CH----HHHHHHHHcCCCEEEEC
Confidence 345666778899987763 33443322111 23444444444 36888875432 32 34556677899999999
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q 018253 161 NPYYGKTSLEGLISHFDSV 179 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~I 179 (359)
...+...+..+..+-+++.
T Consensus 188 sai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 188 SAITHAADPAGEARKISQV 206 (211)
T ss_dssp HHHHTCSSHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 8877777766655555543
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=81.39 E-value=4 Score=37.32 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHh
Q 018253 111 DEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 111 ~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p---------P~y~~~s~~~l~~yf~~Ia~ 181 (359)
.++..-++...+ .++.-++.++.+..+ |+.++++|+|++++.- |.....+-+++..|.+.|++
T Consensus 6 ~~~~~~lr~l~~--~~~~i~~~~ayD~~s------A~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r 77 (255)
T 2qiw_A 6 KSLATKFASDHE--SGKLLVLPTVWDTWS------AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITS 77 (255)
T ss_dssp HHHHHHHHHHHH--TCCCEECCEESSHHH------HHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh--CCCcEEEecCcCHHH------HHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHh
Confidence 344444444332 344334556665433 4556678999998873 23334678999999999998
Q ss_pred c--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCc
Q 018253 182 M--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVG 220 (359)
Q Consensus 182 a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~ 220 (359)
. .| ++-|.|.-.|... .+++.+|.+ -.+.|+|.+.+
T Consensus 78 ~~~~p-viaD~~~Gyg~~~-~~~~~~l~~-aGa~gv~iEd~ 115 (255)
T 2qiw_A 78 AVSIP-VSVDVESGYGLSP-ADLIAQILE-AGAVGINVEDV 115 (255)
T ss_dssp HCSSC-EEEECTTCTTCCH-HHHHHHHHH-TTCCEEEECSE
T ss_pred cCCCC-EEeccCCCcCcHH-HHHHHHHHH-cCCcEEEECCC
Confidence 7 45 7889986544444 778888887 78999998776
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=81.35 E-value=28 Score=33.33 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-Eec-CCCCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNT-GSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVi-agv-g~~st~~ai~la~~a~~~G 153 (359)
-+.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+.+.++.+++++ +=+ ++-+.++++++++..++.|
T Consensus 141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~------~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~ 214 (391)
T 3gd6_A 141 EEVESNLDVVRQKLEQGFDVFRLYVGK------NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYD 214 (391)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECSS------CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeCC------CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 356888888999999999987664322 46777888889999888889998 754 4668999999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh--cCCCeEEEeccC--chh---hH
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA--QSPNLAGVKECV--GND---RV 224 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La--~~pnivGiK~ss--~d~---~l 224 (359)
.+-..+--|.- ..+ .+.+++|.+. .|| +- .-.+++.+.++. ..-.++-+|-+- |-. ++
T Consensus 215 i~~~~iEqP~~-~~d----~~~~~~l~~~~~iPI---dE-----~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i 281 (391)
T 3gd6_A 215 LGLEMIESPAP-RND----FDGLYQLRLKTDYPI---SE-----HVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKA 281 (391)
T ss_dssp SSCCEEECCSC-TTC----HHHHHHHHHHCSSCE---EE-----ECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CCcceecCCCC-hhh----HHHHHHHHHHcCCCc---CC-----CCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHH
Confidence 83334445542 112 4556777765 576 32 245688888887 357899999643 222 33
Q ss_pred hhhh-CCceEEEecC
Q 018253 225 EHYT-GNGIVVWSGN 238 (359)
Q Consensus 225 ~~~~-~~~~~v~~G~ 238 (359)
.+++ .-++.++.|.
T Consensus 282 a~~A~~~gi~~~~~~ 296 (391)
T 3gd6_A 282 AYAAEVASKDVVLGT 296 (391)
T ss_dssp HHHHHHTTCEEEECC
T ss_pred HHHHHHcCCEEEecC
Confidence 3332 2456776654
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=81.34 E-value=5.6 Score=38.35 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=70.5
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCC-CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~-LT~~Er~~li~~~v~~~~grvpViagvg~~st~~a 142 (359)
|.++.|++-......+.-.++.+-..+.|+--.+ ||... +...|. .=+ .+++.. ...++++.++...+.+
T Consensus 88 Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~v-----Gs~~~~le~~~~-~~~-~v~r~~-P~~~~ianig~~~~~e- 158 (365)
T 3sr7_A 88 PFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVT-----GSYSTALKNPDD-TSY-QVKKSR-PHLLLATNIGLDKPYQ- 158 (365)
T ss_dssp SEEEECC----CCCHHHHHHHHHHHHHHTCCEEC-------------------------------CCEEEEEETTSCHH-
T ss_pred ceEeccccCCCcchhHHHHHHHHHHHHcCCCeec-----ccccccccCccc-cce-EehhhC-CCCcEEEEeCCCCCHH-
Confidence 5666777654445667777777777778876432 44433 222222 111 123333 4678999887654433
Q ss_pred HHHHHHHHhCCCCEEEEcCCCC-------CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYY-------GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y-------~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+..+.++.+|||++.+--.++ ...+.+...+..+.|.+. .||++=.. |..++++...++.+
T Consensus 159 -~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~v----g~g~s~e~A~~l~~ 228 (365)
T 3sr7_A 159 -AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEV----GFGMDVKTIQTAID 228 (365)
T ss_dssp -HHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEEC----SSCCCHHHHHHHHH
T ss_pred -HHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEEC----CCCCCHHHHHHHHH
Confidence 445555678999987654321 123345566677777765 69999863 45688998888874
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=81.32 E-value=27 Score=33.27 Aligned_cols=125 Identities=11% Similarity=0.050 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Gad 155 (359)
|.+.+.+.++...+.|.+++=+-... + +.++ .++++.+++.++.++++.+-+ ++.+.++++++++..++.|++
T Consensus 164 ~~e~~~~~a~~~~~~Gf~~vKik~g~-~----~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~ 237 (388)
T 2nql_A 164 TLKARGELAKYWQDRGFNAFKFATPV-A----DDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPW 237 (388)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEGGG-C----TTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCS
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCC-C----ChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 78889999999999999998765321 2 2456 888888888888889998865 456899999999999999988
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCc
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVG 220 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~ 220 (359)
.+ --|+- +. -.+.+++|.+. .||+.=. .-.+++.++++.+ .-+++.+|-+-|
T Consensus 238 ~i--EqP~~--~~---d~~~~~~l~~~~~iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~G 293 (388)
T 2nql_A 238 FA--EAPVW--TE---DIAGLEKVSKNTDVPIAVGE------EWRTHWDMRARIERCRIAIVQPEMGHK 293 (388)
T ss_dssp CE--ECCSC--TT---CHHHHHHHHTSCCSCEEECT------TCCSHHHHHHHHTTSCCSEECCCHHHH
T ss_pred EE--ECCCC--hh---hHHHHHHHHhhCCCCEEEeC------CcCCHHHHHHHHHcCCCCEEEecCCCC
Confidence 54 34532 11 25566777775 5766432 2346888998874 468899997653
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=81.24 E-value=3 Score=39.15 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCceEEeeecC--CCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCc-CCCC-HHHHHHHH---HHHHHhhCCCcE
Q 018253 59 ALRLITAIKTP--YLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-QLMS-WDEHIMLI---GHTVNCFGASVK 129 (359)
Q Consensus 59 ~~Gi~~al~TP--F~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~-~~LT-~~Er~~li---~~~v~~~~grvp 129 (359)
..||+- +|| |.+.|+ .|.+...++++.+++.|++-|=++| ||.-+ ...+ .||..+++ +.+.+.. ++|
T Consensus 42 iMgilN--vTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~--~vp 117 (297)
T 1tx2_A 42 IMGILN--VTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV--KLP 117 (297)
T ss_dssp EEEECC--CCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS--CSC
T ss_pred EEEEEe--CCCCccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--Cce
Confidence 456654 466 876665 5789999999999999999999998 43222 2233 56666666 3333332 578
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 130 VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 130 Viagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
|.+-+.. . +-++.|.++|++-+--+.-. ... ++ -+..+++. .|+++-+.
T Consensus 118 iSIDT~~--~----~V~~aAl~aGa~iINdvsg~--~~d-~~---m~~~aa~~g~~vVlmh~ 167 (297)
T 1tx2_A 118 ISIDTYK--A----EVAKQAIEAGAHIINDIWGA--KAE-PK---IAEVAAHYDVPIILMHN 167 (297)
T ss_dssp EEEECSC--H----HHHHHHHHHTCCEEEETTTT--SSC-TH---HHHHHHHHTCCEEEECC
T ss_pred EEEeCCC--H----HHHHHHHHcCCCEEEECCCC--CCC-HH---HHHHHHHhCCcEEEEeC
Confidence 7765543 2 22333444488766554321 111 22 23444444 68877765
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=81.16 E-value=4.5 Score=35.94 Aligned_cols=88 Identities=13% Similarity=-0.044 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCc-CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEG-QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~-~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....++.+.+.|++.|.+-.-.|.+ ...+. ++++.+.+.+ ++|++++-+=.+.++ ++.+.++|||++.+
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~----~~i~~i~~~~--~ipv~v~ggI~~~~~----~~~~l~~Gad~V~l 103 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVDLDAAFGTGDNR----ALIAEVAQAM--DIKVELSGGIRDDDT----LAAALATGCTRVNL 103 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH----HHHHHHHHHC--SSEEEEESSCCSHHH----HHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhcCCChH----HHHHHHHHhc--CCcEEEECCcCCHHH----HHHHHHcCCCEEEE
Confidence 3455677888999999987655544 23343 4555555554 689999866555543 56666789999988
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia 180 (359)
..... .+++.+.+..+...
T Consensus 104 g~~~l--~~p~~~~~~~~~~g 122 (244)
T 1vzw_A 104 GTAAL--ETPEWVAKVIAEHG 122 (244)
T ss_dssp CHHHH--HCHHHHHHHHHHHG
T ss_pred CchHh--hCHHHHHHHHHHcC
Confidence 64322 12344444444443
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=81.02 E-value=22 Score=36.21 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=91.7
Q ss_pred eEEeeecCCCC----CCCCCHHHH----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 62 LITAIKTPYLP----DGRFDLEAY----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 62 i~~al~TPF~~----dg~ID~~~l----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
.+...+-|+.+ .|.++++.+ +..++.|++.|||.+++= | .-+.+|-+.+++.+.+... ++|+++.
T Consensus 101 ~VAGsiGP~g~~~~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~E-T-----~~~~~Ea~aa~~a~~~~~~-~~Pv~vS 173 (566)
T 1q7z_A 101 LVFGDIGPTGELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFE-T-----FSDILELKAAVLAAREVSR-DVFLIAH 173 (566)
T ss_dssp EEEEEECCCSCCBTTTSSBCHHHHHHHHHHHHHHHHHTTCSEEEEE-E-----ECCHHHHHHHHHHHHHHCS-SSCEEEE
T ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----cCCHHHHHHHHHHHHHhCC-CCcEEEE
Confidence 56667777653 366777664 556677779999987742 2 2367788888877766433 6899987
Q ss_pred cC---------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCC-------CCC
Q 018253 134 TG---------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPS-------RTG 195 (359)
Q Consensus 134 vg---------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~-------~tg 195 (359)
.+ +.+.++++...+ +.|++++.+=- ...++.+..+.+.+... .|+++|=+.+ .+.
T Consensus 174 ~t~~~~g~~~~G~~~~~~~~~l~---~~~~~avG~NC----~~gp~~~~~~l~~l~~~~~~p~~vyPNaG~p~~~~~~~~ 246 (566)
T 1q7z_A 174 MTFDEKGRSLTGTDPANFAITFD---ELDIDALGINC----SLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTV 246 (566)
T ss_dssp ECCCTTSCCTTSCCHHHHHHHHH---TSSCSEEEEES----SSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEE
T ss_pred EEEcCCCeeCCCCcHHHHHHHhh---ccCCCEEEEeC----CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccCCccc
Confidence 64 235666666554 47888887632 13578899999999874 7999997632 223
Q ss_pred CCCCHHHHHHHh----c-CCCeEE
Q 018253 196 QDIPPRVIHTMA----Q-SPNLAG 214 (359)
Q Consensus 196 ~~ls~e~l~~La----~-~pnivG 214 (359)
++.+|+.+.+.+ + --+|+|
T Consensus 247 ~~~~p~~~a~~~~~~~~~G~~iiG 270 (566)
T 1q7z_A 247 YPLKPHDFAVHIDSYYELGVNIFG 270 (566)
T ss_dssp CCCCHHHHHTTHHHHHHTTCSEEC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEc
Confidence 467788666544 2 246665
|
| >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=6.4 Score=41.40 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---cc--------CccC-cCCCCHH---HHHHHHHHHHHhhCCCcEEEEecCCCC-
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIV---GG--------TTGE-GQLMSWD---EHIMLIGHTVNCFGASVKVIGNTGSNS- 138 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v---~G--------stGE-~~~LT~~---Er~~li~~~v~~~~grvpViagvg~~s- 138 (359)
..+.+..+++||+-.+.|.+++++ .. ..+- |..++.- .-.+|++-+.+ ..|.||....+..
T Consensus 367 g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~Dl~eL~~YA~s---KGV~iilw~~t~~~ 443 (738)
T 2d73_A 367 SANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAAR---KGIKMMMHHETSAS 443 (738)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHH---TTCEEEEEEECTTB
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCccccccccccccCCCCCHHHHHHHHHh---CCCEEEEEEcCCCc
Confidence 389999999999999999999999 21 2221 1111111 12345555443 4589998877665
Q ss_pred ---HHHHHH-HHHHHHhCCCCEEEEcCCCCC---CCCH----HHHHHHHHHHHhc---CCeE-EEeCC-CCCCCCCCHHH
Q 018253 139 ---TREAIH-ATEQGFAVGMHAALHINPYYG---KTSL----EGLISHFDSVLSM---GPTI-IYNVP-SRTGQDIPPRV 202 (359)
Q Consensus 139 ---t~~ai~-la~~a~~~Gadav~v~pP~y~---~~s~----~~l~~yf~~Ia~a---~Pii-iYn~P-~~tg~~ls~e~ 202 (359)
.++..+ ..+..++.|+.+|=+- |+. .-+. +..+.||..|++. --++ -++-+ .-||
T Consensus 444 ~~n~e~~~d~~f~~~~~~Gv~GVKvd--F~g~~~~r~~~h~~Q~~v~~Y~~i~~~AA~~~LmVnfHg~~kPtG------- 514 (738)
T 2d73_A 444 VRNYERHMDKAYQFMADNGYNSVKSG--YVGNIIPRGEHHYGQWMNNHYLYAVKKAADYKIMVNAHEATRPTG------- 514 (738)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEE--CCSSCBSTTCCTTSHHHHHHHHHHHHHHHHTTCEEEETTSCCCCS-------
T ss_pred hhhHHHHHHHHHHHHHHcCCCEEEeC--ccccCcCCcccccchHHHHHHHHHHHHHHHcCcEEEccCCcCCCc-------
Confidence 555544 7778899999999886 331 2233 6788999999864 2443 33322 1234
Q ss_pred HHHHh-cCCCeEEEec
Q 018253 203 IHTMA-QSPNLAGVKE 217 (359)
Q Consensus 203 l~~La-~~pnivGiK~ 217 (359)
|. ..||+++---
T Consensus 515 ---l~RTYPN~~t~Eg 527 (738)
T 2d73_A 515 ---ICRTYPNLIGNES 527 (738)
T ss_dssp ---GGGTCTTEEEECC
T ss_pred ---ccccCcchHHHhh
Confidence 34 4799886543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=80.74 E-value=27 Score=30.17 Aligned_cols=186 Identities=9% Similarity=-0.015 Sum_probs=97.4
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC----
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG---- 135 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg---- 135 (359)
.|+++..-. +..+.--|.+...++++.+.+.|++++.+. +. +.++.+.+.+ ++|++...-
T Consensus 5 ~~~~~~~q~-~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~---------~~----~~i~~i~~~~--~~pv~~~~~~~~~ 68 (223)
T 1y0e_A 5 HGLIVSCQA-LPDEPLHSSFIMSKMALAAYEGGAVGIRAN---------TK----EDILAIKETV--DLPVIGIVKRDYD 68 (223)
T ss_dssp SEEEEECCC-CTTSTTCCHHHHHHHHHHHHHHTCSEEEEE---------SH----HHHHHHHHHC--CSCEEEECBCCCT
T ss_pred CCeEEEecC-CCCCCCCCCccHHHHHHHHHHCCCeeeccC---------CH----HHHHHHHHhc--CCCEEeeeccCCC
Confidence 455555443 443334477889999999999999999764 22 3466666655 468753111
Q ss_pred --CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-C
Q 018253 136 --SNSTREAIHATEQGFAVGMHAALHINPYYGKT--SLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-P 210 (359)
Q Consensus 136 --~~st~~ai~la~~a~~~Gadav~v~pP~y~~~--s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~-p 210 (359)
..-.....+.++.+.++|+|.+.+..=....+ +..++++..++.....+++ .+. .+++...++.+. -
T Consensus 69 ~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~-~~~-------~t~~e~~~~~~~G~ 140 (223)
T 1y0e_A 69 HSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM-ADI-------ATVEEAKNAARLGF 140 (223)
T ss_dssp TCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE-EEC-------SSHHHHHHHHHTTC
T ss_pred ccccccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEE-ecC-------CCHHHHHHHHHcCC
Confidence 01001123445667789999998764333233 3344444444432122333 332 246556555432 2
Q ss_pred CeEEEe---------cc--Cc-hh-hHhhhhC-CceEEE--ecC-CchhhhhhhhcCCceeecccccccHHHHHHH
Q 018253 211 NLAGVK---------EC--VG-ND-RVEHYTG-NGIVVW--SGN-DDQCHDARWNHGATGVISVTSNLVPGMMREL 269 (359)
Q Consensus 211 nivGiK---------~s--s~-d~-~l~~~~~-~~~~v~--~G~-d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l 269 (359)
..+++= +. .+ +. .+.+... -++.++ .|- +..-+...+..|++|++.|.+-+-|+...+.
T Consensus 141 d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~p~~~~~~ 216 (223)
T 1y0e_A 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKR 216 (223)
T ss_dssp SEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCHHHHHHH
T ss_pred CEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcCcHHHHHH
Confidence 333321 11 11 11 1222211 133443 354 3333445578899999999876667655443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=80.73 E-value=3.7 Score=38.72 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEEccC-----ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 84 LVNMQIVNGAEGMIVGGT-----TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-----tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
.++.+.+.|+|+|.+-|. +|+. .+ ..++..+++.+ ++|||+.=|=.+.+++.+ +.++|||+|+
T Consensus 122 ~a~~~~~~GaD~i~v~g~~~GG~~g~~--~~----~~ll~~i~~~~--~iPViaaGGI~~~~~~~~----al~~GAdgV~ 189 (332)
T 2z6i_A 122 LAKRMEKIGADAVIAEGMEAGGHIGKL--TT----MTLVRQVATAI--SIPVIAAGGIADGEGAAA----GFMLGAEAVQ 189 (332)
T ss_dssp HHHHHHHTTCSCEEEECTTSSEECCSS--CH----HHHHHHHHHHC--SSCEEEESSCCSHHHHHH----HHHTTCSEEE
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCCCc--cH----HHHHHHHHHhc--CCCEEEECCCCCHHHHHH----HHHcCCCEEE
Confidence 456677899999999543 3422 12 24555555555 589987433333544433 3348999999
Q ss_pred EcCCCCCCC
Q 018253 159 HINPYYGKT 167 (359)
Q Consensus 159 v~pP~y~~~ 167 (359)
+..+++..+
T Consensus 190 vGs~~l~~~ 198 (332)
T 2z6i_A 190 VGTRFVVAK 198 (332)
T ss_dssp ECHHHHTBT
T ss_pred ecHHHhcCc
Confidence 998877543
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=80.67 E-value=9.4 Score=36.07 Aligned_cols=114 Identities=9% Similarity=0.019 Sum_probs=81.9
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccC-cc-----C--cCCCCHHHHHHHHHHHHHhhCCCcEEEEec-
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGT-TG-----E--GQLMSWDEHIMLIGHTVNCFGASVKVIGNT- 134 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~Gs-tG-----E--~~~LT~~Er~~li~~~v~~~~grvpViagv- 134 (359)
..++|.+| ....++++ +.|++.|++.|+ .+ - .-.+|.+|....++.+.+.+. ++||++-.
T Consensus 41 i~~~~ayD-------~~sA~i~e---~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~-~~PviaD~d 109 (318)
T 1zlp_A 41 VLMPGVQD-------ALSAAVVE---KTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP-NLCVVVDGD 109 (318)
T ss_dssp EEEEEECS-------HHHHHHHH---HTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS-SSEEEEECT
T ss_pred EEEecCCC-------HHHHHHHH---HcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc-CCCEEEeCC
Confidence 35678876 33444544 589999999983 44 2 246899999999999888764 68999943
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCEEEEcCCC----C---C---CCCHHHHHHHHHHHHhc---CCeEEE
Q 018253 135 -GSNSTREAIHATEQGFAVGMHAALHINPY----Y---G---KTSLEGLISHFDSVLSM---GPTIIY 188 (359)
Q Consensus 135 -g~~st~~ai~la~~a~~~Gadav~v~pP~----y---~---~~s~~~l~~yf~~Ia~a---~PiiiY 188 (359)
|-.+..++.+.++...++||++|-+---. . . -.++++..+-.+++.++ .+++|.
T Consensus 110 ~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ 177 (318)
T 1zlp_A 110 TGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLV 177 (318)
T ss_dssp TCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEE
Confidence 32389999999999999999999875432 1 1 14677777777777765 355554
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.57 E-value=9.9 Score=36.18 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCCE-EEEccCccCcCCCCHHHHHHHH-------HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH-HhC
Q 018253 82 DDLVNMQIVNGAEG-MIVGGTTGEGQLMSWDEHIMLI-------GHTVNCFGASVKVIGNTGSNSTREAIHATEQG-FAV 152 (359)
Q Consensus 82 ~~li~~li~~Gv~G-l~v~GstGE~~~LT~~Er~~li-------~~~v~~~~grvpViagvg~~st~~ai~la~~a-~~~ 152 (359)
+..++.+-+.||+. |+..++.+ ...+..++..++. ..+++..++|.--++.+.-...+++++..+++ .+.
T Consensus 76 ~~rl~~MD~~GI~~~Vls~~~~~-~~~~~~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~~~~~~a~~El~r~~~~~ 154 (357)
T 3nur_A 76 DERIQFMNNQDVQIQVLSYGNGS-PSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDL 154 (357)
T ss_dssp HHHHHHHHHTTEEEEEEEECTTC-GGGSCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCcEEEEeCCCCc-cccCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 45566666889986 55555544 2233444433322 22233345664334444333567788888886 579
Q ss_pred CCCEEEEcCCCC-CCCCHHHHHHHHHHHHhc-CCeEEEe
Q 018253 153 GMHAALHINPYY-GKTSLEGLISHFDSVLSM-GPTIIYN 189 (359)
Q Consensus 153 Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a-~PiiiYn 189 (359)
|+.++.+.+.+- ...+.+.+...|+.+.+. .||+++-
T Consensus 155 G~~Gv~l~~~~~~~~~~d~~~~p~~~~~~e~g~pV~iH~ 193 (357)
T 3nur_A 155 GFKGALIMGRAQDGFLDQDKYDIIFKTAENLDVPIYLHP 193 (357)
T ss_dssp CCCCEEEESCBTTBCTTSGGGHHHHHHHHHHTCCEEEEC
T ss_pred CceEEEeCCCCCCCCCCCccHHHHHHHHHhcCCeEEEec
Confidence 999998875432 234567788899988887 7999884
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=80.49 E-value=10 Score=33.92 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++.+++.|++.+++..+...-+ ++-.++++.+.+. .+++++.+.+ .+.++.+.++|+|.+.+..-
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~p----~~l~~~i~~~~~~---g~~v~~~v~t------~eea~~a~~~Gad~Ig~~~~ 158 (232)
T 3igs_A 92 DDVDALAQAGAAIIAVDGTARQRP----VAVEALLARIHHH---HLLTMADCSS------VDDGLACQRLGADIIGTTMS 158 (232)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCCS----SCHHHHHHHHHHT---TCEEEEECCS------HHHHHHHHHTTCSEEECTTT
T ss_pred HHHHHHHHcCCCEEEECccccCCH----HHHHHHHHHHHHC---CCEEEEeCCC------HHHHHHHHhCCCCEEEEcCc
Confidence 346667899999988766654433 3444555555442 5788887753 45667888999998865322
Q ss_pred CCC------CCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 163 YYG------KTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 163 ~y~------~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
-|. .++ .+.++++.+. .|++-- . .+ +++.+.++.+.
T Consensus 159 g~t~~~~~~~~~----~~~i~~l~~~~ipvIA~-----G--GI~t~~d~~~~~~~ 202 (232)
T 3igs_A 159 GYTTPDTPEEPD----LPLVKALHDAGCRVIAE-----G--RYNSPALAAEAIRY 202 (232)
T ss_dssp TSSSSSCCSSCC----HHHHHHHHHTTCCEEEE-----S--CCCSHHHHHHHHHT
T ss_pred cCCCCCCCCCCC----HHHHHHHHhcCCcEEEE-----C--CCCCHHHHHHHHHc
Confidence 121 122 2344445543 565522 2 34 57777777653
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=80.46 E-value=39 Score=32.23 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
.+.+.+.+.+...++.|.+++=+-...+ +.++-.+.++.+++.++.++++.+-+ ++.+.++++++++..++.|.
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~-----~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~ 218 (389)
T 2oz8_A 144 LDDDAFVSLFSHAASIGYSAFKIKVGHR-----DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGH 218 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCS-----SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCC-----CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 5788899999999999999987654322 34556778888888887789998865 45689999999999999443
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhcC---CeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCchh---hHhh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RVEH 226 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a~---PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~d~---~l~~ 226 (359)
+-.++--|.- ..+ .+.+++|.+.. ||+.= +.- +++.+.++.+ .-+++-+| ++=. ++.+
T Consensus 219 ~i~~iEqP~~-~~~----~~~~~~l~~~~~~iPIa~d------E~~-~~~~~~~~i~~~~~d~v~ik--GGit~a~~i~~ 284 (389)
T 2oz8_A 219 DLLWVEDPIL-RHD----HDGLRTLRHAVTWTQINSG------EYL-DLQGKRLLLEAHAADILNVH--GQVTDVMRIGW 284 (389)
T ss_dssp CCSEEESCBC-TTC----HHHHHHHHHHCCSSEEEEC------TTC-CHHHHHHHHHTTCCSEEEEC--SCHHHHHHHHH
T ss_pred CceEEeCCCC-CcC----HHHHHHHHhhCCCCCEEeC------CCC-CHHHHHHHHHcCCCCEEEEC--cCHHHHHHHHH
Confidence 3334555542 112 44556666643 44432 223 8888888863 56899999 4332 3333
Q ss_pred hh-CCceEEEec
Q 018253 227 YT-GNGIVVWSG 237 (359)
Q Consensus 227 ~~-~~~~~v~~G 237 (359)
+. .-++.++.|
T Consensus 285 ~A~~~gi~~~~~ 296 (389)
T 2oz8_A 285 LAAELGIPISIG 296 (389)
T ss_dssp HHHHHTCCEEEC
T ss_pred HHHHcCCeEeec
Confidence 32 234556666
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=80.18 E-value=4.9 Score=38.28 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEc-cCccCcCCCC--HHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVG-GTTGEGQLMS--WDEHIMLIGHTVNCFGASVKVIGNTGSN-STREAIHATEQ 148 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~-GstGE~~~LT--~~Er~~li~~~v~~~~grvpViagvg~~-st~~ai~la~~ 148 (359)
++..+.+....+++.|.+.|++.|-+- |.+.+..... ......+++.+.+.+ ++|||++ |.. +.+++ +.
T Consensus 233 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~-Ggi~t~e~a----~~ 305 (349)
T 3hgj_A 233 EGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV--GLRTGAV-GLITTPEQA----ET 305 (349)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH--CCEEEEC-SSCCCHHHH----HH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc--CceEEEE-CCCCCHHHH----HH
Confidence 356888899999999999999998876 4332211111 112344566666655 5798864 543 45444 34
Q ss_pred HHhCC-CCEEEEcCCCCCCCC
Q 018253 149 GFAVG-MHAALHINPYYGKTS 168 (359)
Q Consensus 149 a~~~G-adav~v~pP~y~~~s 168 (359)
+.+.| +|.|++.-++...|+
T Consensus 306 ~l~~G~aD~V~iGR~~lanPd 326 (349)
T 3hgj_A 306 LLQAGSADLVLLGRVLLRDPY 326 (349)
T ss_dssp HHHTTSCSEEEESTHHHHCTT
T ss_pred HHHCCCceEEEecHHHHhCch
Confidence 45577 999999988776554
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=80.01 E-value=8 Score=34.87 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=42.3
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC------------------CCHHHHHHHHHHHHhc--CCeEE
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGK------------------TSLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~------------------~s~~~l~~yf~~Ia~a--~Piii 187 (359)
-.+..+.++.++.++.+.+.|+|.+-+-.|+--+ .+.+...+..+++.+. .|+++
T Consensus 25 ~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~ 99 (262)
T 1rd5_A 25 TAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVL 99 (262)
T ss_dssp ETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEE
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3567778999999999999999999998887521 2456666777777665 69876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1xkya1 | 292 | c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {B | 2e-55 | |
| d2a6na1 | 292 | c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {E | 3e-51 | |
| d1xxxa1 | 296 | c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {M | 4e-46 | |
| d1o5ka_ | 295 | c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermo | 6e-42 | |
| d1hl2a_ | 295 | c.1.10.1 (A:) N-acetylneuraminate lyase {Escherich | 1e-35 | |
| d1f74a_ | 293 | c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophil | 3e-34 | |
| d1w3ia_ | 293 | c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Ed | 3e-23 |
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Score = 181 bits (459), Expect = 2e-55
Identities = 90/287 (31%), Positives = 145/287 (50%), Gaps = 13/287 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+ TA+ TP+ +G D LVN I NG ++VGGTTGE ++ +E + L H V
Sbjct: 7 IATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVV 66
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181
+ V VI TGSN+T +I T++ VG+ A + + PYY K S EG+ HF ++
Sbjct: 67 SVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAE 126
Query: 182 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGND----RVEHYTGNGIVVW 235
P ++YNVP R+ I + +++ N+ +K+ G+ + T + V+
Sbjct: 127 STPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVY 186
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRE------LMFGGKNPSLNTKLFPLIEWL 289
SG+D A GA G++SV S+++ M+E K L+ L + + L
Sbjct: 187 SGDDGLTLPA-MAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDSL 245
Query: 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336
F P+P P+ TAL +G+ RLP +PL +E+R +++ I R
Sbjct: 246 FMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIPR 292
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Score = 170 bits (431), Expect = 3e-51
Identities = 92/287 (32%), Positives = 137/287 (47%), Gaps = 14/287 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T+
Sbjct: 5 SIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTL 64
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181
+ + VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 65 DLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAE 124
Query: 182 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHY----TGNGIVVW 235
P I+YNVPS TG D+ P + +A+ N+ G+KE GN + + V+
Sbjct: 125 HTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLL 184
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFPLIEWL 289
SG+D D G GVISVT+N+ M ++ +N +L PL L
Sbjct: 185 SGDDASALDF-MQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKL 243
Query: 290 FQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIG 335
F EPNPIP+ A +LG+V RLP P+ R + G
Sbjct: 244 FVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAG 290
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 157 bits (397), Expect = 4e-46
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 9/284 (3%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
L+TA+ TP+ DG D L N + G +G++V GTTGE + E I L+
Sbjct: 10 TLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAV 69
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
+ G +VI G+ T +I + A G H L + PYY K GL +HF +V
Sbjct: 70 LEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVA 129
Query: 181 SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDR--VEHYTGNGIVVWS 236
P ++Y++P R+ I P I +A PN+ GVK+ + + G+ +S
Sbjct: 130 DATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMADTGLAYYS 189
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPS-----LNTKLFPLIEWLFQ 291
G+D + + + L G +N + PL + +
Sbjct: 190 GDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCNAMSR 249
Query: 292 EPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
L G+ RLP V E+ +
Sbjct: 250 LGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAAS 293
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Score = 146 bits (368), Expect = 6e-42
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 16/289 (5%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
+ TAI TP+ +G DLE+Y+ LV Q+ NG +IV GTTGE ++ DE L+ T+
Sbjct: 6 VGTAIVTPF-KNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTL 64
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181
+ VI G+NST + + +Q +G + L + PYY K + EGL H+ +
Sbjct: 65 EIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISE 124
Query: 182 M--GPTIIYNVPSRTGQDIPPR-VIHTMAQSPNLAGVKECVGNDRVEHY------TGNGI 232
++YNVP RTG ++ P A N+ G+KE +
Sbjct: 125 RTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSD 184
Query: 233 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM------FGGKNPSLNTKLFPLI 286
+ +D G GVISV SN+ P M EL K+ ++ KL PL+
Sbjct: 185 FMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLM 244
Query: 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335
+ LF E NPIP+ AL +G + RLP VP ++ N++ + G
Sbjct: 245 KALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESG 293
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Score = 129 bits (324), Expect = 1e-35
Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 12/288 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 6 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 65
Query: 122 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF---DS 178
+K+I + G ST E+ G A + P+Y S E H+
Sbjct: 66 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 125
Query: 179 VLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGN--GIVVWS 236
P ++YN+P+R+G + I+T+ P + +K+ G+ +V
Sbjct: 126 SADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREHPDLVLY 185
Query: 237 GNDDQCHDARWNHGATGVISVTSNLVPGMMREL------MFGGKNPSLNTKLFPLIEWLF 290
D+ + GA G I T N++ + + L T+ +I+ L
Sbjct: 186 NGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLI 245
Query: 291 QEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
+ L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 246 KTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQE 293
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Score = 125 bits (315), Expect = 3e-34
Identities = 53/277 (19%), Positives = 111/277 (40%), Gaps = 13/277 (4%)
Query: 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+ +A+ + DG + + ++ I +G+ VGG+TGE ++S +E +
Sbjct: 7 IFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIA 66
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
+ + +I GS + +EA+ + +G + P+Y K S + ++D+++
Sbjct: 67 KDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTII 126
Query: 181 SMGPT--IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEH---YTGNGIVVW 235
+ + I+Y++P TG ++ + ++P + GVK G+ + ++W
Sbjct: 127 AETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIW 186
Query: 236 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPS------LNTKLFPLIEWL 289
+G D+ A + G G I T N+ R++ K + LIE +
Sbjct: 187 AGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIEGI 245
Query: 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 326
+ + L GV R P ++
Sbjct: 246 LANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVA 282
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Score = 96.0 bits (237), Expect = 3e-23
Identities = 52/284 (18%), Positives = 92/284 (32%), Gaps = 8/284 (2%)
Query: 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120
+IT I TP+ D R D E I G + + V GTTG G +S +E + +
Sbjct: 2 EIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAV 61
Query: 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180
+ + +G + ++ VG+ + +
Sbjct: 62 YDVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV 121
Query: 181 SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDD 240
S P +YN P+ TG+DI +V + + E + + ++V+S D
Sbjct: 122 SPHPVYLYNYPTATGKDIDAKVAKEIGCFTGVKDTIENIIHTLDYKRLNPNMLVYS-GSD 180
Query: 241 QCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP------SLNTKLFPLIEWLFQEPN 294
+ G G ++ SN +P + + L +IE +
Sbjct: 181 MLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEASRIFGS 240
Query: 295 PIPLNTALAQL-GVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337
G R P PL E+ + + V I +
Sbjct: 241 LSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRAK 284
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 100.0 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 100.0 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 100.0 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 100.0 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 100.0 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 100.0 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 100.0 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 97.08 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.5 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 95.93 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 95.91 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 95.29 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 94.89 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 94.48 | |
| d1bwva1 | 328 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {G | 94.42 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 94.02 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 93.56 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 93.47 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 93.08 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 92.88 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 92.63 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 92.59 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 92.59 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 92.55 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 92.32 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 91.84 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 91.29 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 91.07 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 90.89 | |
| d1v93a_ | 292 | Methylenetetrahydrofolate reductase {Thermus therm | 90.62 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 90.33 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 89.31 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 89.21 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 88.97 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 88.63 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 88.34 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 88.11 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 87.99 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 87.9 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 87.74 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 87.44 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 87.38 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 87.15 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 86.76 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 86.67 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 85.12 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 84.9 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 84.66 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 84.22 | |
| d3bofa2 | 300 | Cobalamin-dependent methionine synthase MetH, N-te | 84.03 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 83.73 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 83.71 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 83.12 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 83.11 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 83.05 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 82.67 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 82.36 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 81.83 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 81.82 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 81.25 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 80.94 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 80.67 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 80.63 | |
| d5ruba1 | 320 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 80.58 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 80.2 |
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=100.00 E-value=1.9e-64 Score=479.61 Aligned_cols=278 Identities=32% Similarity=0.551 Sum_probs=262.3
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.++||+|+++|||++||+||+++++++++|++++|++||+++|+|||+++||.+||+++++.+++++++|+|||+|+++.
T Consensus 3 ~~~Gi~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 82 (292)
T d1xkya1 3 DFGTIATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSN 82 (292)
T ss_dssp CCCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCCceeeeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
|++++++++++|+++|||++|++||||++++++++++||++|+++ +|+++||+|.++|..++++++.+|+++|||+|+
T Consensus 83 s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~gi 162 (292)
T d1xkya1 83 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAI 162 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEE
Confidence 999999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eccCchh----hHhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~----~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|+++++. ++.+...+++.+|.|.|.+++.. +..|++|++++++|++|+.++++|+ +|+ ++++++++.++
T Consensus 163 K~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~G~~G~~~~~~n~~p~~~~~l~~~~~~g~~~~a~~l~~~l~~~ 241 (292)
T d1xkya1 163 KDAGGDVLTMTEIIEKTADDFAVYSGDDGLTLPA-MAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRV 241 (292)
T ss_dssp EECSSCHHHHHHHHHHSCTTCEEEESSGGGHHHH-HHTTCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eccccchhhhheeeeecCCCCEEEECCccccchH-HHcCCCccccchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9999884 23344578899999999888765 8899999999999999999999886 464 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+++++..+++.++|++|+++|++.+++|+|+.+++++++++|+++|++++.
T Consensus 242 ~~~~~~~~~~~~~K~~l~~~Gi~~g~~R~P~~~lt~~~~~~i~~~l~~l~r 292 (292)
T d1xkya1 242 TDSLFMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIPR 292 (292)
T ss_dssp HHHTTSSSTTHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHTSCC
T ss_pred HHHHhccCcHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998888889999999999999999999999999999999999999999863
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-64 Score=478.65 Aligned_cols=278 Identities=33% Similarity=0.542 Sum_probs=261.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++|+||++|+++.+
T Consensus 2 ~~Gv~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s 81 (292)
T d2a6na1 2 FTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANA 81 (292)
T ss_dssp CSEEEEECCCCBCTTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CcceeeeEECCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
++++++++++|+++|+|+++++||+|++++++++++||++|+++ .||++||+|..+|+.++++++++|+++|||+|+|
T Consensus 82 ~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~~pnv~giK 161 (292)
T d2a6na1 82 TAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIK 161 (292)
T ss_dssp HHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ccCchh----hHhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~----~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. ++.+..+++|.++.|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ ++++|+++.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~G~~G~i~~~~~~~p~~~~~i~~~~~~g~~~~a~~l~~~l~~l~ 240 (292)
T d2a6na1 162 EATGNLTRVNQIKELVSDDFVLLSGDDASALDF-MQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLH 240 (292)
T ss_dssp ECSCCTTHHHHHHTTSCTTSEEEECCGGGHHHH-HHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eccCcchhhhhhhhhcCCccEEeecchhhhhhH-hhCCceEEEeecchhhhhchhhhhhHhhcCCcchHHHHHHHHHHHH
Confidence 999884 23344567899999998888764 8899999999999999999999996 464 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVV-RPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~-~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+.++..+++.++|++|+++|++ .+.+|+|+.+++++++++|+++|+++|+.
T Consensus 241 ~~~~~~~~~~~~K~~l~~~G~~~~~~~R~P~~~l~~~~~~~i~~~l~~~gli 292 (292)
T d2a6na1 241 NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292 (292)
T ss_dssp HHTTSSSTTHHHHHHHHHTTSSSCCCCCTTSCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccCHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 9988888999999999999985 68999999999999999999999999974
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.1e-64 Score=478.87 Aligned_cols=280 Identities=29% Similarity=0.442 Sum_probs=263.3
Q ss_pred ccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 57 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 57 ~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
.|+.||+||++|||++||+||++++++++++++++|++|++++|||||+++||.+||+++++.+++.+++|+|||+|+++
T Consensus 6 ~~~~Gv~~a~~TPf~~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~ 85 (296)
T d1xxxa1 6 ARLGTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT 85 (296)
T ss_dssp HHHCSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred ccCCceeeeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEecccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
.+++++++++++|+++|+|++|++||+|++++++++++||++|+++ .||++||+|..+|..++++++++|+++|||+|
T Consensus 86 ~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~~p~i~g 165 (296)
T d1xxxa1 86 YDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVG 165 (296)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEE
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcCCCCeee
Confidence 9999999999999999999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred EeccCchh-hHhh-hhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 215 VKECVGND-RVEH-YTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 215 iK~ss~d~-~l~~-~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
+|++++|. ++.+ ...+++.+++|.|.++++. +..|++|++++++|++|+.++++|+ +|+ |+++++++.+++
T Consensus 166 iK~~s~d~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~G~~G~is~~~n~~P~~~~~i~~~~~~gd~~~A~~l~~~l~~l~ 244 (296)
T d1xxxa1 166 VKDAKADLHSGAQIMADTGLAYYSGDDALNLPW-LAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLC 244 (296)
T ss_dssp EEECSCCHHHHHHHHHHHCCEEEECSGGGHHHH-HHHTCCEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eccccccHHHHHhhhcccccccccCcccccchh-hhcccccccchhccchhHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 99999984 3332 3356799999999887764 8899999999999999999999997 465 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
++++..+++..+|++|+++|++.+.+|+|+.+++++++++|++.|+++|+.
T Consensus 245 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~e~~~~l~~~l~~~gll 295 (296)
T d1xxxa1 245 NAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAASVL 295 (296)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHccCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 998888888999999999999989999999999999999999999999975
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-63 Score=472.19 Aligned_cols=277 Identities=35% Similarity=0.569 Sum_probs=259.5
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||+ ||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++++++|+|||+|+++.|
T Consensus 3 f~Gi~~~~~TPf~-d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 81 (295)
T d1o5ka_ 3 FRGVGTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNS 81 (295)
T ss_dssp CSEEEEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSC
T ss_pred CCccceeeEcCcC-CCcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeeccccc
Confidence 7999999999995 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGi 215 (359)
|+++++++++|+++|||++|++||+|+++|++++++||++|+++ .|+++||+|..+|+.++++++.+|+ ++|||+|+
T Consensus 82 t~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~i 161 (295)
T d1o5ka_ 82 TEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 161 (295)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhhcccccce
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999997 69999999
Q ss_pred eccCchh----hHh---hhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHH
Q 018253 216 KECVGND----RVE---HYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKL 282 (359)
Q Consensus 216 K~ss~d~----~l~---~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l 282 (359)
|++++|. ++. +...+++.+++|.|.+++.. +..|++|++++.+|++|+.++++|+ +|+ ++++|+++
T Consensus 162 K~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~Ga~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l 240 (295)
T d1o5ka_ 162 KEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYL-LCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKL 240 (295)
T ss_dssp EECCCCHHHHHHHHHHHHHHCTTCEEEESSGGGHHHH-HHHTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCcchhhhhhHHHHhhhcCCcceeccccccchhhh-hhcCCCcccccccccccchhhHHHHHHHcCCchHHHHHHHHH
Confidence 9999883 222 22367899999999888764 8999999999999999999999986 464 67899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 283 FPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 283 ~~l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
.+++++++..+++.++|++|+++|++.|.+|+|+.+++++++++|+++|+++|+.
T Consensus 241 ~~l~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~gll 295 (295)
T d1o5ka_ 241 RPLMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGLL 295 (295)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHTTSSCCCCCTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHccCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 9999988888889999999999999989999999999999999999999999974
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=3.4e-62 Score=464.69 Aligned_cols=276 Identities=20% Similarity=0.296 Sum_probs=256.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
++|||++++|||++||+||+++++++++|++++ |++||+++|||||+++||.+||+++++.+++++++|+||++||++.
T Consensus 4 l~Gi~~~~~TPf~~dg~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 83 (293)
T d1f74a_ 4 LKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 83 (293)
T ss_dssp CCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred CeeeeEeEECCCCCCCCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccc
Confidence 799999999999999999999999999999976 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
+++++++++++|+++|||+++++||+|++++++++++||++++++ .|+++||+|.+||++++++++.+|+++|||+|+
T Consensus 84 s~~~~iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg~~l~~~~l~~L~~~~~v~gi 163 (293)
T d1f74a_ 84 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGV 163 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSSCSCHHHHHHHHHHHHTSTTEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeeccceeccccchhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred eccCchh-hHhh--hhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 216 KECVGND-RVEH--YTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 216 K~ss~d~-~l~~--~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
|++++|. ++.+ ...+++.++.|.|.++++. +..|++|++++++|++|++++++|+ +|+ ++++|+++.+++
T Consensus 164 K~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~G~~G~i~~~~n~~P~~~~~~~~~~~~gd~~~A~~l~~~~~~~~ 242 (293)
T d1f74a_ 164 KFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLI 242 (293)
T ss_dssp EECCSCHHHHHHHHHHCTTSEEEECCGGGHHHH-HHTTCCEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHhhcCCCeEEEeCcccccchh-hhCCCcccccccchhcchHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999984 2222 2356788999999988864 8999999999999999999999886 565 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+.++..+++.++|++|+++|+..|.+|+|+.+++++|++++.+.|++-+
T Consensus 243 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~e~~~~~~~l~~~~ 291 (293)
T d1f74a_ 243 EGILANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVAKAKDLKAKF 291 (293)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCCBCCCTTSCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcc
Confidence 9998888888999999999999999999999999999988888887643
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-61 Score=458.08 Aligned_cols=275 Identities=24% Similarity=0.397 Sum_probs=257.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++||+++++|||++||+||+++++++++|+++.|++||+++|+|||+++||.+||.++++.+++++++|+|+|+|+++.|
T Consensus 3 l~Gv~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s 82 (295)
T d1hl2a_ 3 LRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVS 82 (295)
T ss_dssp CCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSS
T ss_pred CceeeeeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
++++++++++|+++|+|++|++||+|++++++++++||.+++++ .|+++||+|.++|+.++++++.+|+++|||+|+
T Consensus 83 ~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgi 162 (295)
T d1hl2a_ 83 TAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGAL 162 (295)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred hhHHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhh
Confidence 99999999999999999999999999999999999999999875 599999999999999999999999999999999
Q ss_pred eccCchh-hHhh--hhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 216 KECVGND-RVEH--YTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 216 K~ss~d~-~l~~--~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
|++++|. ++.+ ...+++.+++|.|..++.. +..|++|++++++|++|+.++++|+ +|+ ++++|+++.+++
T Consensus 163 K~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~G~~G~is~~~n~~p~~~~~i~~~~~~gd~~~A~~l~~~~~~l~ 241 (295)
T d1hl2a_ 163 KQTSGDLYQMEQIRREHPDLVLYNGYDEIFASG-LLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 241 (295)
T ss_dssp EECCCCHHHHHHHHHHCTTCEEEECCGGGHHHH-HHHTCCEEEETTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhhcCCCceEecccHHHHhhh-hccCCCceeccchhccchhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 9999984 3322 2357799999999887764 8999999999999999999999986 465 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 287 EWLFQEPNPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~-~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
++++..+++.++|++|+++|+ ..+.+|+|+.+++++++++++++++++
T Consensus 242 ~~~~~~~~~~~~K~~l~~~G~~~~~~~R~P~~~l~~~~~~~l~~~l~~l 290 (295)
T d1hl2a_ 242 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQL 290 (295)
T ss_dssp HHHHHHCHHHHHHHHHHHTTSCSSCCCCTTSCCCCGGGHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 988888888899999999997 457899999999999999999999986
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-56 Score=425.67 Aligned_cols=268 Identities=24% Similarity=0.288 Sum_probs=238.8
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
+||+|++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++.. .++++|+++.||+
T Consensus 2 ~i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~---~~~i~gv~~~st~ 78 (293)
T d1w3ia_ 2 EIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVT---NKIIFQVGGLNLD 78 (293)
T ss_dssp EEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTC---SCEEEECCCSCHH
T ss_pred cEEEEeeCCCCCCcCCCHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhc---cccccccccchhh
Confidence 6999999999999999999999999999999999999999999999999999999999888754 4688999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC-CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEec
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~-~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ 217 (359)
++++++++|+++|+|+++++||+|+ +++++++++||++|+++ .|+++||+|.++|++++++++.+| |||+|+|+
T Consensus 79 ~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~lYn~P~~~g~~l~~~~~~~l---~ni~giK~ 155 (293)
T d1w3ia_ 79 DAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEI---GCFTGVKD 155 (293)
T ss_dssp HHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH---CCEEEEEE
T ss_pred hhhhhhhhhhhhccccccccccchhccchHHHHHHHHHHHHHhhccceeeeccccccccccchhhHHhh---hhhhcccc
Confidence 9999999999999999999999754 68999999999999987 699999999999999999988776 99999999
Q ss_pred cCchh-hHhh--hhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHH
Q 018253 218 CVGND-RVEH--YTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEW 288 (359)
Q Consensus 218 ss~d~-~l~~--~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~ 288 (359)
+++|. ++.+ ...++|.+|+|.|.+++. .+.+|++|++++++|++|++++++|+ +|+ ++++|..+.++++.
T Consensus 156 ss~d~~~~~~~~~~~~~~~v~~G~d~~~~~-~~~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 234 (293)
T d1w3ia_ 156 TIENIIHTLDYKRLNPNMLVYSGSDMLIAT-VASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEA 234 (293)
T ss_dssp CCSCHHHHHHHHHHCTTSEEEECCSTTHHH-HHHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhccceecccccccchhh-hhccCCceeeecccchhhhhhhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99983 3222 246789999999988876 48999999999999999999999986 465 57899999999987
Q ss_pred HhcCCChH-HHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 289 LFQEPNPI-PLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 289 l~~~~~~~-~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
....+.+. ..|.++.++|+..|.+|+|+.++++++++++.+.++++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~G~~~g~~R~Pl~~l~~e~~~~l~~~l~~i~ 282 (293)
T d1w3ia_ 235 SRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIR 282 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHhcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 76655544 455556788999999999999999999999998888764
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.011 Score=53.50 Aligned_cols=139 Identities=16% Similarity=0.121 Sum_probs=91.9
Q ss_pred eEEeeecCCCCCCC---CC-HHHHHHHHHHHHHCCCCEEEEc--------cCccCcCCCCHHHHHHHHHHHHHhhCC-Cc
Q 018253 62 LITAIKTPYLPDGR---FD-LEAYDDLVNMQIVNGAEGMIVG--------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SV 128 (359)
Q Consensus 62 i~~al~TPF~~dg~---ID-~~~l~~li~~li~~Gv~Gl~v~--------GstGE~~~LT~~Er~~li~~~v~~~~g-rv 128 (359)
|.-++-.|...|.+ =+ .....+.++.+++.|+.|+.+= |..+=-...+.+|...-++.+++...+ +.
T Consensus 72 i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~ 151 (289)
T d1muma_ 72 ITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDF 151 (289)
T ss_dssp HHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTS
T ss_pred HhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcch
Confidence 34444455544432 23 5688999999999999999984 433334457899999999998886543 45
Q ss_pred EEEEecCCC---CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHH
Q 018253 129 KVIGNTGSN---STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 129 pViagvg~~---st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
-||+=+-+. +.+++|++++.+.++|||++++..+ .+.+++.++-+.+ ..|+++=-.+....-.++.+.+.+
T Consensus 152 ~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~----~~~~~~~~~~~~~--~~Pl~~~~~~~~~~p~~s~~eL~~ 225 (289)
T d1muma_ 152 VIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----TELAMYRQFADAV--QVPILANITEFGATPLFTTDELRS 225 (289)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----CCHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHH
T ss_pred hheeccccccccCHHHHHHHHHHhhhcCCcEEEecCC----CCHHHHHHHHHhc--CCCEEEeecCcCCCccchHHHHHH
Confidence 577766554 5899999999999999999987533 3666655444333 158764222222222356666655
Q ss_pred H
Q 018253 206 M 206 (359)
Q Consensus 206 L 206 (359)
+
T Consensus 226 ~ 226 (289)
T d1muma_ 226 A 226 (289)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.50 E-value=0.075 Score=47.31 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=88.4
Q ss_pred eecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCc---------c-CcCCCCHHHHHHHHHHHHHhhC-CCcEEE
Q 018253 66 IKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTT---------G-EGQLMSWDEHIMLIGHTVNCFG-ASVKVI 131 (359)
Q Consensus 66 l~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~Gst---------G-E~~~LT~~Er~~li~~~v~~~~-grvpVi 131 (359)
+-.|...| |==|.....+.++.+++.|+.|+.+=-.+ | +....+.+|...-++.+++... .+.-|+
T Consensus 75 ~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ 154 (275)
T d1s2wa_ 75 SDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIV 154 (275)
T ss_dssp CSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEE
T ss_pred cCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEE
Confidence 34455433 32367888999999999999999986654 2 2346789998888888887643 456677
Q ss_pred EecCC----CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 132 GNTGS----NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 132 agvg~----~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
+=+-+ .+.+|+|++++.+.++|||.+++..+- ..++.+..+-.......|+++ +|.. +...+.+.+.+|
T Consensus 155 ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~---~~~~~~~~~~~~~~~~~pl~~--~~~~-~~~~~~~eL~~l 227 (275)
T d1s2wa_ 155 ARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK---ADPSDIEAFMKAWNNQGPVVI--VPTK-YYKTPTDHFRDM 227 (275)
T ss_dssp EEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS---SSSHHHHHHHHHHTTCSCEEE--CCST-TTTSCHHHHHHH
T ss_pred ecchhhhhcCCHHHHHHHHHHHHhcCCCeeeecccc---CcHHHHHHHHHhhcCCCCEEE--eccc-ccccHHHHHHHc
Confidence 76543 468999999999999999999985442 233433333333333356554 3332 224555555555
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.93 E-value=0.037 Score=49.88 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=73.2
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~a 142 (359)
-|-+++.--++-+.+.+++..+...|+|=|====.-........+||.+.+-.+++. ++.++-..+++++ ++++.
T Consensus 23 ~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Nit~-~~~~m 101 (291)
T d2d69a1 23 ATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG-PVNIM 101 (291)
T ss_dssp EECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCS-SHHHH
T ss_pred EeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEeccC-CHHHH
Confidence 344555534999999999999999999955433344566788999999777777664 4444444557764 79999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCC
Q 018253 143 IHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y 164 (359)
++.++.++++|++++|+-+-.+
T Consensus 102 ~~ra~~~~~~G~~~vmi~~~~~ 123 (291)
T d2d69a1 102 EKRAEMVANEGGQYVMIDIVVA 123 (291)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccc
Confidence 9999999999999999974433
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=95.91 E-value=0.043 Score=49.80 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=73.6
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC---CCcEEEE-ecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKVIG-NTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~---grvpVia-gvg~~st~~ 141 (359)
+-|-+++.=-++-+.+.+++..+...|+|=|====.-........+||.+.+-.+++.++ |+..+++ ++++ ++.+
T Consensus 22 ~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~NiT~-~~~e 100 (307)
T d1geha1 22 YGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITA-DLLE 100 (307)
T ss_dssp EEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBCCS-SHHH
T ss_pred EEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEccC-ChHH
Confidence 445556653499999999999999999995432224566778899999977666666542 4445544 6764 8999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++.++.++++|++++|+-+-.+
T Consensus 101 m~~ra~~a~~~G~~~vmi~~~~~ 123 (307)
T d1geha1 101 MEQRLEVLADLGLKHAMVDVVIT 123 (307)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecccc
Confidence 99999999999999999984433
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.29 E-value=0.11 Score=47.34 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=75.8
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.=-++-+.+.+++..+...|+|=|====.-........+||.+.+-.+++. ++.+.-..+++++.+.++
T Consensus 20 lgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~~~~~e 99 (325)
T d1wdda1 20 LGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEE 99 (325)
T ss_dssp EECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHH
T ss_pred EEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCHHH
Confidence 4566666644999999999999999999955422245677788999998877665554 444566677898888999
Q ss_pred HHHHHHHHHhCCCCEEEEcC
Q 018253 142 AIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~p 161 (359)
.++.++.++++|++++|+-+
T Consensus 100 m~~ra~~a~e~G~~~~mi~~ 119 (325)
T d1wdda1 100 MIKRAVFARELGVPIVMHDY 119 (325)
T ss_dssp HHHHHHHHHHHTCSEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 99999999999999999863
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=94.89 E-value=1.1 Score=39.31 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
-|.-|++...++++.+.++|+|-|=++--.++ ++ -.+.+.-.++++...+. ...+|++.-...
T Consensus 25 ~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~-~~~~pivlm~Y~ 103 (267)
T d1qopa_ 25 LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK-HPTIPIGLLMYA 103 (267)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSSSCEEEEECH
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhccc-ccccceEEEeec
Confidence 56678999999999999999998887744433 32 34555666667665554 346788876655
Q ss_pred CCHHHH--HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCC
Q 018253 137 NSTREA--IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPN 211 (359)
Q Consensus 137 ~st~~a--i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pn 211 (359)
+....- -++++.++++|+|++++..=.+ ++...+ ...++. +..+..=.| .-+.+-++++++ .+.
T Consensus 104 N~i~~~G~~~f~~~~~~~Gv~GliipDlP~-----ee~~~~-~~~~~~~~l~~I~lvaP-----tt~~~Ri~~i~~~a~g 172 (267)
T d1qopa_ 104 NLVFNNGIDAFYARCEQVGVDSVLVADVPV-----EESAPF-RQAALRHNIAPIFICPP-----NADDDLLRQVASYGRG 172 (267)
T ss_dssp HHHHTTCHHHHHHHHHHHTCCEEEETTCCG-----GGCHHH-HHHHHHTTCEEECEECT-----TCCHHHHHHHHHHCCS
T ss_pred cchhhcCchHHHHHHHhcCCCceeccchhh-----hhhHHH-HHhhhccCceEEEEecc-----cccHHHHHHHHhhCch
Confidence 444432 4778899999999998864121 333333 344443 444433334 245678888884 566
Q ss_pred eEEEeccCch--------h-------hHhhhhCCceEEEecCC----chhhhhhhhcCCceeecccccccHHHHHHHHHc
Q 018253 212 LAGVKECVGN--------D-------RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLVPGMMRELMFG 272 (359)
Q Consensus 212 ivGiK~ss~d--------~-------~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~a 272 (359)
++++.-..+- . ++++.+ +.-+..|.. ++.. ..+..|+||+|-|++ ++++++.
T Consensus 173 FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~-~~~~~~ADGvIVGSA------ivk~i~~ 243 (267)
T d1qopa_ 173 YTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVS-AAVRAGAAGAISGSA------IVKIIEK 243 (267)
T ss_dssp CEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHH-HHHHTTCSEEEECHH------HHHHHHH
T ss_pred hhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHH-HHHhcCCCEEEECHH------HHHHHHh
Confidence 6665533221 1 233333 445666653 2222 236789999998854 5555654
Q ss_pred C-Cc-HHHHHHHHHHHHH
Q 018253 273 G-KN-PSLNTKLFPLIEW 288 (359)
Q Consensus 273 g-~a-~~l~~~l~~l~~~ 288 (359)
+ ++ .+..+.+..+++.
T Consensus 244 ~~~~~~~~~~~i~~~v~~ 261 (267)
T d1qopa_ 244 NLASPKQMLAELRSFVSA 261 (267)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 4 32 3444555555443
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.48 E-value=0.077 Score=47.51 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=90.7
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREA 142 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~a 142 (359)
-|-+++.--++-+.+.+++..+...|+|=|====.-+.......+||.+.+..+++.+ +.++-..++++ .++++.
T Consensus 23 ~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~NiT-~~~~em 101 (283)
T d1ykwa1 23 FGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT-DEVDSL 101 (283)
T ss_dssp EEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCGGGH
T ss_pred EeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeecC-CCHHHH
Confidence 3445555449999999999999999999654222456677788999988887777654 44455566886 599999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC-------CCCCCHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT-------GQDIPPRVIHTMAQ 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t-------g~~ls~e~l~~La~ 208 (359)
++.++.+++.|++++|+-+-.+. +.-++.+++. +||..+-. .+ ...|+..++.+|.+
T Consensus 102 ~~ra~~~~~~G~~~~mv~~~~~G-------~~a~~~l~~~~~lpi~~H~a--~~g~~~r~~~~Gis~~vl~KL~R 167 (283)
T d1ykwa1 102 MEKHDVAVRNGANALLINALPVG-------LSAVRMLSNYTQVPLIGHFP--FIASFSRMEKYGIHSKVMTKLQR 167 (283)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHC-------HHHHHHHHHHCSSCEEEECT--TTHHHHCSTTSEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccch-------HHHHHHHHhhcCCCeEeeec--cceeeccCcCCCccHHHHHHHHH
Confidence 99999999999999998753332 2334445543 67766531 21 12356666666553
|
| >d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Galdieria partita [TaxId: 83374]
Probab=94.42 E-value=0.49 Score=42.88 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=75.0
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+.|-+++.=-++.+.+.+++..+...|+|=|====.-........+||.+.+..+++. ++.++-..+++++.+.++
T Consensus 21 ~~tiiKP~~Glsp~~~a~~~~e~a~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~av~~a~~eTG~~~~ya~NiT~~~~~~ 100 (328)
T d1bwva1 21 LGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEE 100 (328)
T ss_dssp EECBCSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSHHH
T ss_pred EEeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCccchHHHHHHHHHHHHHHHHHhCCeeEEEEeccCCCHHH
Confidence 4566677644999999999999999999954322245677888999999777666664 455566677998888999
Q ss_pred HHHHHHHHHhCCCCEEEEc
Q 018253 142 AIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~ 160 (359)
..+.++.+++.|+.++|+-
T Consensus 101 m~~ra~~~~~~g~~~lm~~ 119 (328)
T d1bwva1 101 MYARANFAKELGSVIIMID 119 (328)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEc
Confidence 9999999999999988875
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.68 Score=43.13 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---------ccCccCcCCCCHHHHHHHHHHHHHh---hCCCcEEEEecCC-----
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGS----- 136 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v---------~GstGE~~~LT~~Er~~li~~~v~~---~~grvpViagvg~----- 136 (359)
|-=+.....++++.++++|+.||-+ ||..+=-...+.+|...-++.++.+ .+...-||+=+-+
T Consensus 160 GfG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~l 239 (416)
T d1igwa_ 160 GFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADL 239 (416)
T ss_dssp CSSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCE
T ss_pred ccCchHHHHHHHHHHHhCCCeEEEeccCccccchhcccCCCccCCHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 4456778899999999999999876 5666666778899988777777654 4566667776655
Q ss_pred --------------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEE
Q 018253 137 --------------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TIIY 188 (359)
Q Consensus 137 --------------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P--iiiY 188 (359)
..++++|+.++.+.+ |||.+.+-.|. ++.++..+|-+.|-...| ++.|
T Consensus 240 i~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~-gADli~~Et~~---~~~e~a~~fa~~v~~~~p~~~l~y 315 (416)
T d1igwa_ 240 ITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAP-YADLVWCETST---PDLELARRFAQAIHAKYPGKLLAY 315 (416)
T ss_dssp ESCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECCSS---CCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred hhccchhcccCcccCccCccccccccCChHHHHHHHHHhhc-cccEEeeecCC---CCHHHHHHHHHhcCCCchhHhhcc
Confidence 478999999998877 99998886543 466777777777766555 7889
Q ss_pred eC
Q 018253 189 NV 190 (359)
Q Consensus 189 n~ 190 (359)
|.
T Consensus 316 n~ 317 (416)
T d1igwa_ 316 NC 317 (416)
T ss_dssp EC
T ss_pred CC
Confidence 85
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.56 E-value=0.12 Score=48.33 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCH--------------HHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSW--------------DEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~--------------~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
.++.+.+...++-..+.|++|+.+..|+..-..... .--.+++..+.+..++++|||..=|=.|.+
T Consensus 276 d~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~ 355 (409)
T d1tv5a1 276 DLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGL 355 (409)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHH
T ss_pred CCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHH
Confidence 367788999999999999999999998866432221 123667777778888899988543445789
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+++|+.+ +||++|.+-.=+
T Consensus 356 Da~e~i~----AGAs~VQv~T~l 374 (409)
T d1tv5a1 356 DALEKIE----AGASVCQLYSCL 374 (409)
T ss_dssp HHHHHHH----TTEEEEEESHHH
T ss_pred HHHHHHH----cCCCHHhhhhHH
Confidence 9999887 899999997654
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=93.47 E-value=1.3 Score=38.12 Aligned_cols=175 Identities=13% Similarity=0.165 Sum_probs=99.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC-CCCH------HHHHHHHHHHHhCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG-SNST------REAIHATEQGFAVG 153 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg-~~st------~~ai~la~~a~~~G 153 (359)
.+.+++.+++.|+|+++.. .. +++.. ...++++++-.. +.+. ....--.++|.++|
T Consensus 41 ~~~~~~~~~~~g~Da~~~~----------~G----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sve~a~rlG 103 (251)
T d1ojxa_ 41 PEYILRLARDAGFDGVVFQ----------RG----IAEKY---YDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLG 103 (251)
T ss_dssp HHHHHHHHHHHTCSEEEEC----------HH----HHHHH---CCSSSCEEEECEECCTTCCSSCCCEESSCHHHHHHTT
T ss_pred HHHHHHHHHhcCCChhhcc----------hH----HHHHh---cccccCeeEEEecCcccccccchhhhccCHHHHHhch
Confidence 3567777888999998832 22 22222 234445444321 1111 00112256677899
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCC--CCCCCHHHHHH---Hh-cC-CCeEEEeccCch
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRT--GQDIPPRVIHT---MA-QS-PNLAGVKECVGN 221 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~t--g~~ls~e~l~~---La-~~-pnivGiK~ss~d 221 (359)
||++.+.- |+....+++..+.+.++.++ +|+++.-+|.-. ....+++.+.. ++ ++ ..|+=++.+...
T Consensus 104 adaV~~~v-~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p~~~ 182 (251)
T d1ojxa_ 104 ASAVGYTI-YPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDP 182 (251)
T ss_dssp CSEEEEEE-CTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCCSSH
T ss_pred hceEEEEE-eCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCCCcH
Confidence 99997773 44556788888998888764 798877776432 33567777664 33 44 478777776554
Q ss_pred hh---Hhh-hhCCceEEEecCC----chhh---hhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHH
Q 018253 222 DR---VEH-YTGNGIVVWSGND----DQCH---DARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKL 282 (359)
Q Consensus 222 ~~---l~~-~~~~~~~v~~G~d----~~~~---~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l 282 (359)
.. +.. .....+-+..|.. +.++ ..++..|+.|++.| +.+|+..+..++-+.+
T Consensus 183 ~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~G---------Rni~q~~~p~~~~~al 245 (251)
T d1ojxa_ 183 KTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG---------RNVWQRRDALKFARAL 245 (251)
T ss_dssp HHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES---------HHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeec---------hhhhCcCcHHHHHHHH
Confidence 32 222 2233444554432 1122 22467899999987 6667654444443333
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=93.08 E-value=1.2 Score=37.59 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=114.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
..+++|.+-+ .|.+...++++.|++.|++-+=+.=+ .++-.+.++...+..+ + +++|+|+--
T Consensus 13 ~~~iipvlr~-------~~~~~~~~~~~al~~~Gi~~iEitl~--------~~~a~~~I~~l~~~~p-~--~~vGaGTV~ 74 (212)
T d1vhca_ 13 ELKIVPVIAL-------DNADDILPLADTLAKNGLSVAEITFR--------SEAAADAIRLLRANRP-D--FLIAAGTVL 74 (212)
T ss_dssp HHCEEEEECC-------SSGGGHHHHHHHHHHTTCCEEEEETT--------STTHHHHHHHHHHHCT-T--CEEEEESCC
T ss_pred HCCEEEEEeC-------CCHHHHHHHHHHHHHCCCCEEEEeCC--------ChhHHHHHHHHHhcCC-C--ceEeeeecc
Confidence 4556666544 25567889999999999998866543 3456778887777654 3 678888776
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s 218 (359)
+.+ .++.|.++||+.++ .|.+ .+++.++-.+ +++|...|+ ++|..+.+..+. +...+|.-
T Consensus 75 ~~~---~~~~a~~aGa~Fiv--SP~~----~~~v~~~a~~---------~~i~~iPGv-~TpsEi~~A~~~-G~~~vK~F 134 (212)
T d1vhca_ 75 TAE---QVVLAKSSGADFVV--TPGL----NPKIVKLCQD---------LNFPITPGV-NNPMAIEIALEM-GISAVKFF 134 (212)
T ss_dssp SHH---HHHHHHHHTCSEEE--CSSC----CHHHHHHHHH---------TTCCEECEE-CSHHHHHHHHHT-TCCEEEET
T ss_pred cHH---HHHHHHhhCCcEEE--CCCC----CHHHHHHHHh---------cCCCccCCc-CCHHHHHHHHHC-CCCEEEEc
Confidence 555 56677889998554 3555 3677777654 233333454 566555543332 22336653
Q ss_pred Cch----h-hHhhhhC--CceEEEe--cCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 018253 219 VGN----D-RVEHYTG--NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWL 289 (359)
Q Consensus 219 s~d----~-~l~~~~~--~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~~l 289 (359)
-.+ . .++.+.+ +++.++. |-...-+..++.+|+.++..| ++++|+. +.++++..++.++...+++.+
T Consensus 135 PA~~~gG~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~G-s~l~~~~---~i~~~d~~~i~~~a~~~~~~i 210 (212)
T d1vhca_ 135 PAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGG-SWFVEKK---LIQSNNWDEIGRLVREVIDII 210 (212)
T ss_dssp TTTTTTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEE-CGGGCHH---HHHTTCHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEC-hhhCCHH---HHhcCCHHHHHHHHHHHHHHh
Confidence 322 2 2333322 4555554 554444556788887766544 4566653 344677777777777666643
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.88 E-value=0.063 Score=48.27 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=60.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCC-------------------------HHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMS-------------------------WDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT-------------------------~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
..+++.+.+.|++|+.+..+++....+. ..--.+.++.+.+... ++|||+.=|=
T Consensus 186 ~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI 264 (312)
T d1gtea2 186 VSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGI 264 (312)
T ss_dssp HHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSC
T ss_pred HHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcC-CCcEEEEcCC
Confidence 4566777789999999988765222111 2233566777676664 5898875555
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHHH
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDSV 179 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~I 179 (359)
.+-++++++.. +|||+|++....++. +. -+++.+-.++.
T Consensus 265 ~~~~d~~~~l~----aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~ 305 (312)
T d1gtea2 265 DSAESGLQFLH----SGASVLQVCSAVQNQDFTVIQDYCTGLKAL 305 (312)
T ss_dssp CSHHHHHHHHH----TTCSEEEESHHHHTSCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----cCCCeeEECHhhhccChHHHHHHHHHHHHH
Confidence 57888887664 799999999987654 43 24454444443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=2.2 Score=35.99 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=114.9
Q ss_pred CCcccc-cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEE
Q 018253 52 TSAEDI-KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV 130 (359)
Q Consensus 52 ~~~~~~-~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpV 130 (359)
++++++ ...+|+|.+-.. |.+....+++-|++.|++-+=+.=+| ++-.+.++...+..+ + +
T Consensus 6 ~~~~~~l~~~~iipvlr~~-------~~~~a~~~~~al~~~Gi~~iEitl~t--------p~a~~~I~~l~~~~p-~--~ 67 (213)
T d1wbha1 6 TSAESILTTGPVVPVIVVK-------KLEHAVPMAKALVAGGVRVLNVTLRT--------ECAVDAIRAIAKEVP-E--A 67 (213)
T ss_dssp SCHHHHHHSCSEEEEECCS-------SGGGHHHHHHHHHHTTCCEEEEESCS--------TTHHHHHHHHHHHCT-T--S
T ss_pred cCHHHHHHhCCEEEEEECC-------CHHHHHHHHHHHHHCCCCEEEEeCCC--------hhHHHHHHHHHHHCC-C--C
Confidence 344443 345577665542 66777999999999999988654433 455777777777665 3 5
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCC
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSP 210 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~p 210 (359)
++|+|+-.+.+.+ +.|.++||+.++. |.+ ..++.+|-.+ +++|...|+ ++|..+.+-.+ -
T Consensus 68 ~vGaGTV~~~~~~---~~a~~aGa~FivS--P~~----~~~v~~~a~~---------~~i~~iPGv-~TpsEi~~A~~-~ 127 (213)
T d1wbha1 68 IVGAGTVLNPQQL---AEVTEAGAQFAIS--PGL----TEPLLKAATE---------GTIPLIPGI-STVSELMLGMD-Y 127 (213)
T ss_dssp EEEEESCCSHHHH---HHHHHHTCSCEEE--SSC----CHHHHHHHHH---------SSSCEEEEE-SSHHHHHHHHH-T
T ss_pred eeeccccccHHHH---HHHHHCCCcEEEC--CCC----CHHHHHHHHh---------cCCCccCCc-CCHHHHHHHHH-C
Confidence 6788776666554 5667899986554 554 3667776554 223333454 56655544333 2
Q ss_pred CeEEEeccCch----h-hHhhhhC--CceEEEe--cCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHH
Q 018253 211 NLAGVKECVGN----D-RVEHYTG--NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTK 281 (359)
Q Consensus 211 nivGiK~ss~d----~-~l~~~~~--~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~ 281 (359)
+...+|.--.+ . .++.+.+ +++.++. |-+..-+..++.+|+.++..| +.++|+. +.++|+..++.++
T Consensus 128 G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g~v~~~~G-s~l~~~~---~i~~~d~~~i~~~ 203 (213)
T d1wbha1 128 GLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGG-SWLVPAD---ALEAGDYDRITKL 203 (213)
T ss_dssp TCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEE-GGGSCHH---HHHHTCHHHHHHH
T ss_pred CCCEEEeccchhcChHHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCCCEEEEEC-hhhCChh---hhhcCCHHHHHHH
Confidence 33346753322 2 2333322 4555554 555555566788898777654 4555553 3445666666666
Q ss_pred HHHHHH
Q 018253 282 LFPLIE 287 (359)
Q Consensus 282 l~~l~~ 287 (359)
...+++
T Consensus 204 a~~~v~ 209 (213)
T d1wbha1 204 AREAVE 209 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.32 Score=44.45 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC----------------HHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS----------------WDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT----------------~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+...++...+.|++|+.+..++-...... ..-..+.++.+.+..++++|+|+.=|=.+.
T Consensus 231 ~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~ 310 (367)
T d1d3ga_ 231 LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSG 310 (367)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSH
T ss_pred cchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCH
Confidence 4567788888888999999999887763332221 144566667777777888999876666789
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+|++|+.. +|||+|.+..=+
T Consensus 311 ~Da~e~i~----aGAs~VQi~Ta~ 330 (367)
T d1d3ga_ 311 QDALEKIR----AGASLVQLYTAL 330 (367)
T ss_dssp HHHHHHHH----HTCSEEEESHHH
T ss_pred HHHHHHHH----cCCCHHHhhHHH
Confidence 99999887 899999998764
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=92.59 E-value=1.4 Score=38.42 Aligned_cols=107 Identities=10% Similarity=-0.014 Sum_probs=72.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH-------HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH-HhCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI-------GHTVNCFGASVKVIGNTGSNSTREAIHATEQG-FAVG 153 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li-------~~~v~~~~grvpViagvg~~st~~ai~la~~a-~~~G 153 (359)
+.+++.+-+.||+.-++.-++........++-.++. ..+++.-.+|.-.++.+--...+++++..+++ ++.|
T Consensus 37 ~~~l~~Md~~GI~~avl~~~~p~~~~~~~~~~~~~~~~~Nd~~~~~~~~~P~Rf~~~a~vp~~~~~~a~~el~r~~~~~G 116 (306)
T d2f6ka1 37 QLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDGKSLAQQYPDQLGYLASLPIPYELDAVKTVQQALDQDG 116 (306)
T ss_dssp HHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHHHHHHHHCTTTEEEEECCCTTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCEEEEcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccchhhHHHHHHHHHHhccc
Confidence 345677778999986654444444556666655443 23344456787666666556788899877776 5679
Q ss_pred CCEEEEcCCCCC-CCCHHHHHHHHHHHHhc-CCeEEE
Q 018253 154 MHAALHINPYYG-KTSLEGLISHFDSVLSM-GPTIIY 188 (359)
Q Consensus 154 adav~v~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiY 188 (359)
+.++.+.+++-. ..+...+...|+...+. +||+++
T Consensus 117 ~~Gi~~~~~~~~~~~~dp~~~pi~~~~~e~~lpv~~H 153 (306)
T d2f6ka1 117 ALGVTVPTNSRGLYFGSPVLERVYQELDARQAIVALH 153 (306)
T ss_dssp CSEEEEESEETTEETTCGGGHHHHHHHHTTTCEEEEE
T ss_pred ceEEEecCccccccCCCccchHHHHHHHHcCCceEec
Confidence 999987765432 24556788888888876 799887
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.55 E-value=1.6 Score=40.67 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE---------ccCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCC-------
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS------- 136 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v---------~GstGE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~------- 136 (359)
=+.....++++.++++|+.||-+ ||..+=-...+.+|..+-++.++.+. +...-||+=+-+
T Consensus 159 G~~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~ 238 (418)
T d1f61a_ 159 GGALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLIT 238 (418)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEES
T ss_pred ccHHHHHHHHHHHHHhCCcEEEEeccCCCCccccccCCcccCCHHHHHHHHHHHHHhhhcCCCCeEEEEEcchhhhcccc
Confidence 35677889999999999999976 67777778889999888888776542 334456665443
Q ss_pred ------------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC--CeEEEeC
Q 018253 137 ------------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNV 190 (359)
Q Consensus 137 ------------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~--PiiiYn~ 190 (359)
.+++++|++++.+++.|+|.++... .++.+++.++-+.|-... .++.||.
T Consensus 239 s~~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~----~~~~ee~~~f~~~v~~~~~~~~l~~~~ 314 (418)
T d1f61a_ 239 SDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETG----TPDLEAARQFSEAVKAEYPDQMLAYNC 314 (418)
T ss_dssp CSCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCS----SCCHHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred cccccccccccccccCccccccccCCHHHHHHHHHhhhhccCeEEeccC----CCCHHHHHHHHhhcCCCcchhhcccCc
Confidence 3568999999999999877665543 357888888888877653 5889996
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=92.32 E-value=1.2 Score=37.69 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=81.3
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNS 138 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~s 138 (359)
.++-.+.+.=| +.|.-+.+.-...++..++.|++-|=+.-..|-..+=.+++-.+-+..+++.+++. ++||.=++..+
T Consensus 52 s~v~v~~VigF-P~G~~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~ 130 (211)
T d1ub3a_ 52 APFRLVTVVGF-PLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFS 130 (211)
T ss_dssp CSSEEEEEEST-TTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSC
T ss_pred CCCceEEEEec-ccccCcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCC
Confidence 34555555667 78999999999999999999999987777777655556666666677777777655 57999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++-++.++.+.++|||.+=..+=+
T Consensus 131 ~~ei~~a~~~a~~aGadfiKTSTG~ 155 (211)
T d1ub3a_ 131 PEEIARLAEAAIRGGADFLKTSTGF 155 (211)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSS
T ss_pred HHHHHHHHHHHHHhccceEEecCCC
Confidence 9999999999999999976665543
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=91.84 E-value=0.48 Score=41.76 Aligned_cols=109 Identities=10% Similarity=-0.015 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCCEEEEccCc-cCcCCCCHHHHHHHH----HHHHHh---hCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTT-GEGQLMSWDEHIMLI----GHTVNC---FGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~Gst-GE~~~LT~~Er~~li----~~~v~~---~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+.+++.+-+.||+.-++..+- ...+....++-.++. +.+.+. ..+|...++.+.-.+.+++++..+++.+.|
T Consensus 59 ~~~l~~Md~~gid~av~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~~~~~~~a~~el~r~~~~g 138 (331)
T d2hbva1 59 AFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAAG 138 (331)
T ss_dssp HHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeccccccccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEeecccchhhhhHHHHhhhhc
Confidence 445677778999986665433 334444444433332 222332 345655555555557889999999999999
Q ss_pred CCEEEEcCCCC-CCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 154 MHAALHINPYY-GKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 154 adav~v~pP~y-~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+.++.+.+.+- ..++...+...|+...+. +||+++-.
T Consensus 139 ~~g~~l~~~~~~~~~~d~~~~p~~~~~~e~~~pv~iH~~ 177 (331)
T d2hbva1 139 HLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPW 177 (331)
T ss_dssp CCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred ceeeeecccccCcccccchhhHHHHHHhccCCceEEecC
Confidence 99998865443 235778899999999887 89999843
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=91.29 E-value=1.9 Score=36.68 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=78.5
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNS 138 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~s 138 (359)
.++-.+.++=| +.|.-..+.-...++..++.|++-|=+.-..|-+.+=..+.-.+-++.+++.+++. ++||.-++..+
T Consensus 52 ~~vkv~tVigF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~ 130 (225)
T d1mzha_ 52 KKVKVCCVIGF-PLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLN 130 (225)
T ss_dssp SSSEEEEEEST-TTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCC
T ss_pred cCCceEEEecc-CCCCCcHHHHHHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCC
Confidence 44545555667 78999999999999999999999886665555544445555555555666666655 47899999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++.+..++.+.++|||.+=..+=+.
T Consensus 131 ~~ei~~a~~~a~~aGadfiKTSTG~~ 156 (225)
T d1mzha_ 131 EEEIKKAVEICIEAGADFIKTSTGFA 156 (225)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSCS
T ss_pred HHHHHHHHHHHHHcccceEeecCCCC
Confidence 99999999999999999887655543
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=91.07 E-value=0.74 Score=40.28 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=85.3
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+.+.+.+++ +...|.+.+.++++.+++.|++.|.++=|+|- +++++-.++++.+.+..+.++++=++. +++..-
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~li~~l~~~~~~~i~i~~H~-Hnd~Gl 219 (303)
T d1rqba2 146 AQGTICYTI--SPVHTVEGYVKLAGQLLDMGADSIALKDMAAL---LKPQPAYDIIKAIKDTYGQKTQINLHC-HSTTGV 219 (303)
T ss_dssp EEEEEECCC--STTCCHHHHHHHHHHHHHTTCSEEEEEETTCC---CCHHHHHHHHHHHHHHHCTTCCEEEEE-BCTTSC
T ss_pred EEEEEEecC--CCCCCHHHHHHHHHHHHhcCCcEEeecCccch---hhhHHHHHHHHHHHhhcCCcccceecc-CchHHH
Confidence 344455554 44568899999999999999999999999986 589999999999999887778877665 567888
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHH
Q 018253 142 AIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFD 177 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~ 177 (359)
++.-+-.|.++|++.+=..---+ ...+-++++.+++
T Consensus 220 a~AN~laA~~aG~~~id~ti~GlG~~~GN~~te~lv~~L~ 259 (303)
T d1rqba2 220 TEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLE 259 (303)
T ss_dssp HHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEECCccCCCCCCCccHHHHHHHHH
Confidence 88888999999999986665433 2345566666554
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=90.89 E-value=0.52 Score=41.01 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=86.6
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
|+-+....+. .+..|.+.+...++.+.+.|++.|.+.=|.|- +++++-.++++.+.+..+..+++=++. +++..
T Consensus 132 g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~---~~P~~v~~~v~~l~~~~~~~~~i~~H~-Hn~~g 205 (289)
T d1nvma2 132 GMDTVGFLMM--SHMIPAEKLAEQGKLMESYGATCIYMADSGGA---MSMNDIRDRMRAFKAVLKPETQVGMHA-HHNLS 205 (289)
T ss_dssp TCEEEEEEES--TTSSCHHHHHHHHHHHHHHTCSEEEEECTTCC---CCHHHHHHHHHHHHHHSCTTSEEEEEC-BCTTS
T ss_pred CCceeeEeee--ccccCchhhhHHHHhhccccceeeeecchhhc---ccchhHHHHHHHHHHHhcccccceeee-chHHH
Confidence 4444444333 45689999999999999999999999999994 689999999999888887777776665 46777
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDSV 179 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~~I 179 (359)
-++..+..|.++|++.+=..---+. ...-|.++.+++..
T Consensus 206 ~a~an~l~A~~~G~~~id~si~GlG~~~GN~~tE~lv~~l~~~ 248 (289)
T d1nvma2 206 LGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERL 248 (289)
T ss_dssp CHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcEeeccccccCCCCCCccHHHHHHHHHhc
Confidence 8999999999999998855543232 24557777777643
|
| >d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.62 E-value=4.9 Score=34.98 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCC---HHHHHHHHHHHHHhhCCCcEEE-E-----ecCCCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMS---WDEHIMLIGHTVNCFGASVKVI-G-----NTGSNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT---~~Er~~li~~~v~~~~grvpVi-a-----gvg~~st~~a 142 (359)
-+..++...+..+.+.|++.+++.+.= +..+..+ ...-.++++...+..++..-+- + +..+.+.+.-
T Consensus 83 ~n~~~l~~~l~~~~~~GI~niLal~GD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig~a~~Peghp~~~~~~~~ 162 (292)
T d1v93a_ 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (292)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECCCCCCTTCSSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTCSSHHHH
T ss_pred chHHHHHHHHHHHHHhCcCeEeeccCCCCccCcccCCcccchhHHHHHHHHHHHhcCCCcccccccCCCCCccchhHHHH
Confidence 577899999999999999999988741 1111101 1113344444444444333321 1 2234456777
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
++..+.-.++||+.++.. +.| +.+.+.+|.+.+.+. .||++=-.|
T Consensus 163 ~~~l~~K~~aGA~fiiTQ-~~F---D~~~~~~~~~~~r~~gi~~Pi~~Gi~p 210 (292)
T d1v93a_ 163 LRHFKAKVEAGLDFAITQ-LFF---NNAHYFGFLERARRAGIGIPILPGIMP 210 (292)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECS---SHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred HHHHHHHHHhccCeEEEe-eec---cHHHHHHHHHHHHHhccCCCccccccc
Confidence 888888889999976544 666 678889998888765 587764333
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.33 E-value=0.87 Score=39.51 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=50.3
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEE----EEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGM----IVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl----~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
-+..++||-+.+ +.+++..+ . .+|+ ...|.||+...+.. +-.+.++.+.+.. ++||++|.|=.
T Consensus 135 ~~I~lvaPtt~~-----~ri~~i~~----~-s~gFiY~vs~~GvTG~~~~~~~-~~~~~v~~vk~~t--~~Pv~vGFGI~ 201 (248)
T d1geqa_ 135 KTVFLAAPNTPD-----ERLKVIDD----M-TTGFVYLVSLYGTTGAREEIPK-TAYDLLRRAKRIC--RNKVAVGFGVS 201 (248)
T ss_dssp EEEEEECTTCCH-----HHHHHHHH----H-CSSEEEEECCC-------CCCH-HHHHHHHHHHHHC--SSCEEEESCCC
T ss_pred ceEEEecccchh-----HHHHHHHh----c-CCCeEEEEecccccccchhhhh-hHHHHHHHHhhhc--ccceeeecccC
Confidence 356678887654 34444433 2 2333 34689999988876 4556888888874 57999999976
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 138 STREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~p 161 (359)
+.+++.+. .+.|||++++-.
T Consensus 202 ~~e~v~~~----~~~~ADGvIVGS 221 (248)
T d1geqa_ 202 KREHVVSL----LKEGANGVVVGS 221 (248)
T ss_dssp SHHHHHHH----HHTTCSEEEECH
T ss_pred CHHHHHHH----HhcCCCEEEECH
Confidence 66665544 448899999964
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=89.31 E-value=2.8 Score=36.16 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=84.1
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNS 138 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~s 138 (359)
.++-.+.+.=| +.|.-+.+.-..-++..++.|++-|=+.-..|.+.+=.+++-.+-++.+++.+++ -++||.-++..+
T Consensus 85 s~v~v~tVigF-P~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~ 163 (251)
T d1o0ya_ 85 TDVKVVTVVGF-PLGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLD 163 (251)
T ss_dssp SCCEEEEEEST-TTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC
T ss_pred CCceEEeeccC-CCCCCcHHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccC
Confidence 34444445567 6799999999999999999999999888888887777777777777777877754 477899999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++-+..++.+.++|||.+-..+=+
T Consensus 164 ~~e~~~a~~ia~~aGadfvKTSTGf 188 (251)
T d1o0ya_ 164 TEEKIAACVISKLAGAHFVKTSTGF 188 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred cHHHHHHHHHHHHhCcceeeccCCC
Confidence 9999999999999999987766554
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=89.21 E-value=0.61 Score=40.85 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=59.6
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC--------------------CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ--------------------LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~--------------------~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~a 142 (359)
..++.+++.|++++.+.+..|-.. .++. ...+.+ + ..+.+++|||+-=|=.+-.|+
T Consensus 174 e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~al~~-~-~~~~~~i~Ii~dGGIr~g~Dv 249 (310)
T d1vcfa1 174 EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPT--ARAILE-V-REVLPHLPLVASGGVYTGTDG 249 (310)
T ss_dssp HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBH--HHHHHH-H-HHHCSSSCEEEESSCCSHHHH
T ss_pred HHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHH--HHHHHH-H-HhhcCCCeEEeCCCCCchHHH
Confidence 345567789999999887766211 1111 122222 2 235578999985444455665
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 182 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a 182 (359)
++. -.+|||+|++-.|+++. ..++++.++++.+.+.
T Consensus 250 ~KA----LalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~E 287 (310)
T d1vcfa1 250 AKA----LALGADLLAVARPLLRPALEGAERVAAWIGDYLEE 287 (310)
T ss_dssp HHH----HHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH----HHhCCCEeeEhHHHHHHhccCHHHHHHHHHHHHHH
Confidence 544 35999999999998653 4578888888877654
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=1.8 Score=38.57 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCC------------CC----HHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL------------MS----WDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~------------LT----~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+.+.++...+.|++|+....++..-.. || ...-.+.+..+.+..++++|+|..=|=.+.
T Consensus 222 ~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~ 301 (336)
T d1f76a_ 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSV 301 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSH
T ss_pred hhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCH
Confidence 57788999999999999999887655432211 00 233356677777778889998865555678
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCC
Q 018253 140 REAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP 162 (359)
+|++|+.. +||++|.+..=
T Consensus 302 ~Da~e~i~----aGAsaVQv~Ta 320 (336)
T d1f76a_ 302 IAAREKIA----AGASLVQIYSG 320 (336)
T ss_dssp HHHHHHHH----HTCSEEEESHH
T ss_pred HHHHHHHH----cCCcHHHHHHH
Confidence 88988877 89999999754
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=88.63 E-value=1.2 Score=34.92 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=61.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+.+++...+.+++-+.+-.+.++ +...-+++++...+.-..++||++| .......+.-+..+..++.|+|++.-
T Consensus 43 ~e~iv~a~~~~~~d~v~lS~~~~~----~~~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~ 118 (137)
T d1ccwa_ 43 QELFIKAAIETKADAILVSSLYGQ----GEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYA 118 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSST----HHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECC
T ss_pred HHHHHHHHHhcCCCEEEEeecccc----chHHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEEC
Confidence 356777788889999998888887 4566677777776654467999885 33323333444555778899998731
Q ss_pred cCCCCCCCCHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSV 179 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~I 179 (359)
| ..+.+++.+|.+.=
T Consensus 119 --~---~t~~~~~~~~l~~~ 133 (137)
T d1ccwa_ 119 --P---GTPPEVGIADLKKD 133 (137)
T ss_dssp --T---TCCHHHHHHHHHHH
T ss_pred --C---CCCHHHHHHHHHHH
Confidence 2 24678888887753
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=88.34 E-value=0.44 Score=41.77 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=56.7
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEG-MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~G-l~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
...++||-+. .+.+++.++. +.|-=- +-..|+||+-..++.+- .+.++.+.+.. ++||++|.|=.+.++
T Consensus 145 ~I~lvaPtt~-----~~Ri~~i~~~--a~gFvY~vs~~GvTG~~~~~~~~~-~~~i~~ik~~t--~~Pi~vGFGI~~~e~ 214 (261)
T d1rd5a_ 145 LVLLTTPAIP-----EDRMKEITKA--SEGFVYLVSVNGVTGPRANVNPRV-ESLIQEVKKVT--NKPVAVGFGISKPEH 214 (261)
T ss_dssp ECEEECTTSC-----HHHHHHHHHH--CCSCEEEECSSCCBCTTSCBCTHH-HHHHHHHHHHC--SSCEEEESCCCSHHH
T ss_pred eEEEeccCCc-----hhHHHHHHhc--CcchhhhhhccCcccccccchhHH-HHHHHHhhhcc--CCCeEEEcCCCCHHH
Confidence 4556677543 3445554442 233221 22369999999888754 66777777664 689999999766666
Q ss_pred HHHHHHHHHhCCCCEEEEcCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~ 163 (359)
+-++. +.|||+++|-.-.
T Consensus 215 v~~~~----~~gaDGvIVGSai 232 (261)
T d1rd5a_ 215 VKQIA----QWGADGVIIGSAM 232 (261)
T ss_dssp HHHHH----HTTCSEEEECHHH
T ss_pred HHHHH----hcCCCEEEECHHH
Confidence 55544 4799999997653
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=88.11 E-value=2 Score=38.51 Aligned_cols=134 Identities=9% Similarity=-0.042 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHH-------HHHCCCCEEEEccCccC---------------cCCCCHHHHHHHHHHHHHhhCC--CcEEE
Q 018253 76 FDLEAYDDLVNM-------QIVNGAEGMIVGGTTGE---------------GQLMSWDEHIMLIGHTVNCFGA--SVKVI 131 (359)
Q Consensus 76 ID~~~l~~li~~-------li~~Gv~Gl~v~GstGE---------------~~~LT~~Er~~li~~~v~~~~g--rvpVi 131 (359)
+..+.++.+++. ..++|.|||-+-+..|- -+-=|.+-|.+++..+++.+.. .-|++
T Consensus 133 lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~ 212 (337)
T d1z41a1 133 MSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLF 212 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccce
Confidence 556666666654 45799999999886443 0112567787776666665321 23555
Q ss_pred EecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC
Q 018253 132 GNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGKT----SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI 198 (359)
Q Consensus 132 agvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~----s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l 198 (359)
+.++ ..+.++++++++..+++|+|.+-+..-.|... .+.-...+.+.|-+. +||+. +|.--
T Consensus 213 vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~------~G~i~ 286 (337)
T d1z41a1 213 VRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGA------VGMIT 286 (337)
T ss_dssp EEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEE------CSSCC
T ss_pred EEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEE------eCCcC
Confidence 5443 56899999999999999999987765433221 111122233333333 57764 34444
Q ss_pred CHHHHHHHhc--CCCeEEE
Q 018253 199 PPRVIHTMAQ--SPNLAGV 215 (359)
Q Consensus 199 s~e~l~~La~--~pnivGi 215 (359)
+++..+++.+ .-.+||+
T Consensus 287 ~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 287 DGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp SHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHHHHHCCCcceehh
Confidence 7888888753 2346655
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.99 E-value=3.6 Score=36.60 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccC--------cCC-------CCHHHHHHHHHHHHHh----hCCCcEEEEec-----
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGE--------GQL-------MSWDEHIMLIGHTVNC----FGASVKVIGNT----- 134 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE--------~~~-------LT~~Er~~li~~~v~~----~~grvpViagv----- 134 (359)
+.+..-..+..++|.|||-+-|..|- ... =|.+.|.+++..+++. ++.+.+|.+=+
T Consensus 141 ~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~ 220 (330)
T d1ps9a1 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccc
Confidence 33444445556799999999886543 111 1467788877666654 45556665422
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCEEEEcC-------CCCCCCCHHH-HHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH
Q 018253 135 --GSNSTREAIHATEQGFAVGMHAALHIN-------PYYGKTSLEG-LISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV 202 (359)
Q Consensus 135 --g~~st~~ai~la~~a~~~Gadav~v~p-------P~y~~~s~~~-l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~ 202 (359)
++.+.++++++++..++.|+|.+-+.. |.+..+..++ ...+.+.|-+. +||+.- |.--+++.
T Consensus 221 ~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~------G~i~~~~~ 294 (330)
T d1ps9a1 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTT------NRINDPQV 294 (330)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEEC------SSCCSHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEe------CCCCCHHH
Confidence 456899999999999999999987642 2222222222 22333444443 577652 33346888
Q ss_pred HHHHhc--CCCeEEE
Q 018253 203 IHTMAQ--SPNLAGV 215 (359)
Q Consensus 203 l~~La~--~pnivGi 215 (359)
.+++.+ .-.+||+
T Consensus 295 ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 295 ADDILSRGDADMVSM 309 (330)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHCCCcchhHh
Confidence 888763 2345555
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=87.90 E-value=1.9 Score=37.78 Aligned_cols=105 Identities=12% Similarity=0.043 Sum_probs=69.0
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHH-HHH-------HHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH-HhCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEH-IML-------IGHTVNCFGASVKVIGNTGSNSTREAIHATEQG-FAVGM 154 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er-~~l-------i~~~v~~~~grvpViagvg~~st~~ai~la~~a-~~~Ga 154 (359)
.++.+-+.||+.-++..+..=...+...|. .++ +..+++...+|..-++.+.-.+.+++++..+++ ++.|+
T Consensus 43 rl~~MD~~GId~avl~~~~~~~~~~~~~~~~~~~ar~~Nd~l~~~~~~~P~Rf~~~~~v~~~~~~~a~~el~r~~~~~g~ 122 (325)
T d2dvta1 43 RLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRANDVLAEECAKRPDRFLAFAALPLQDPDAATEELQRCVNDLGF 122 (325)
T ss_dssp HHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHHHHHHHHHHCTTTEEEEECCCTTSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCcEEEEecCchHhcccCChHHHHHHHHHHHHHHHHHhccCCCeEEEEEEccccccchhhhhhhhhhhcccc
Confidence 456677899998665333322233444333 222 223344567887777888777889998877776 66799
Q ss_pred CEEEEcCCCCC-------CCCHHHHHHHHHHHHhc-CCeEEE
Q 018253 155 HAALHINPYYG-------KTSLEGLISHFDSVLSM-GPTIIY 188 (359)
Q Consensus 155 dav~v~pP~y~-------~~s~~~l~~yf~~Ia~a-~PiiiY 188 (359)
.++.+.+.+-. ..+...+...|+.+.+. +||+++
T Consensus 123 ~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH 164 (325)
T d2dvta1 123 VGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLH 164 (325)
T ss_dssp CEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEE
T ss_pred eEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEe
Confidence 99988764321 24556788899988886 899887
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=87.74 E-value=1.8 Score=35.46 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=48.4
Q ss_pred HHHHHCCCCEEEEccCccCcC---CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQ---LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~---~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
....+.|++++.+.+..+... ......-.+++..+.+.+ ++||+++=|=.+.+++.+ +.++|||++++-..
T Consensus 133 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GGI~t~~d~~~----~~~~GAdgV~iGsA 206 (222)
T d1y0ea_ 133 KNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDMYKR----VMDLGVHCSVVGGA 206 (222)
T ss_dssp HHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHHHHH----HHHTTCSEEEECHH
T ss_pred HHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCCCCCHHHHHH----HHHcCCCEEEEchh
Confidence 446789999987654332222 222222245555555543 699998655445555544 44699999999875
Q ss_pred CCCCCCHHHHHHHH
Q 018253 163 YYGKTSLEGLISHF 176 (359)
Q Consensus 163 ~y~~~s~~~l~~yf 176 (359)
.. .++++.+.|
T Consensus 207 i~---rp~~~~~~f 217 (222)
T d1y0ea_ 207 IT---RPKEITKRF 217 (222)
T ss_dssp HH---CHHHHHHHH
T ss_pred hc---CHHHHHHHH
Confidence 42 455555544
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.44 E-value=2 Score=37.14 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC--------CCHHHHHHHHHHHHhC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS--------NSTREAIHATEQGFAV 152 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~--------~st~~ai~la~~a~~~ 152 (359)
++.+++++.+.|.+.+=+.-++. .|+.++|.++++.+.+. ...|+.=+|. .+.++-|++++...++
T Consensus 87 ~~~y~~~~~~lGf~~iEiSdg~~---~i~~~~~~~~I~~~~~~---G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Lea 160 (251)
T d1qwga_ 87 FDEFLNECEKLGFEAVEISDGSS---DISLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA 160 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSS---CCCHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc---CCCHHHHHHHHHHHHhC---CCEEeecccCCCCCCccccCHHHHHHHHHHHHHC
Confidence 66778888888999988877765 48999999999988763 3566665553 3578889999999999
Q ss_pred CCCEEEEc
Q 018253 153 GMHAALHI 160 (359)
Q Consensus 153 Gadav~v~ 160 (359)
||+.|++-
T Consensus 161 GA~~ViiE 168 (251)
T d1qwga_ 161 GADYVIIE 168 (251)
T ss_dssp TCSEEEEC
T ss_pred CCceeEee
Confidence 99999986
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.38 E-value=0.57 Score=39.13 Aligned_cols=83 Identities=11% Similarity=-0.066 Sum_probs=47.7
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+...+.|++.+.+.+..+.............+...... .++|||+.=|=.+.+++.+ +.++|||+|++-.-..
T Consensus 143 a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ipvia~GGI~t~~d~~~----al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 143 GLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCK--AGIAVIAEGKIHSPEEAKK----INDLGVAGIVVGGAIT 216 (230)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHH--TTCCEEEESCCCSHHHHHH----HHTTCCSEEEECHHHH
T ss_pred HHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhc--CCCeEEEeCCCCCHHHHHH----HHHcCCCEEEEChhhc
Confidence 556678999998877755544333222211122222222 3689998555445555543 4568999999986432
Q ss_pred CCCCHHHHHHHH
Q 018253 165 GKTSLEGLISHF 176 (359)
Q Consensus 165 ~~~s~~~l~~yf 176 (359)
.++++.+.|
T Consensus 217 ---~p~~i~~~~ 225 (230)
T d1yxya1 217 ---RPKEIAERF 225 (230)
T ss_dssp ---CHHHHHHHH
T ss_pred ---CHHHHHHHH
Confidence 456654433
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=87.15 E-value=0.79 Score=40.55 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccCc-CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~-~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
+.||+-..+=-|.++|. .|.+..-+.++.+++.|++=|=++| ||--+ ...|.+|-.+-+.-+++......++++.|-
T Consensus 17 IMGIlNvTPDSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSID 96 (282)
T d1ajza_ 17 VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_dssp EEEEEECCTTTSTTTTCSSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEEeCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccceEEEE
Confidence 67888777777887776 7889999999999999999988888 55444 344555544444455665543345556676
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCC
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPS 192 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~ 192 (359)
+...+ -++.|.++|||-+==+ ....++ +. ++.+++. .|+++-+.++
T Consensus 97 T~~~e----Va~~al~~Ga~iINDv---sg~~~~-~~---~~~va~~~~~~vlmh~~g 143 (282)
T d1ajza_ 97 TSKPE----VIRESAKVGAHIINDI---RSLSEP-GA---LEAAAETGLPVCLMHMQG 143 (282)
T ss_dssp CCCHH----HHHHHHHTTCCEECCT---TTTCST-TH---HHHHHHHTCCEEEECCSS
T ss_pred ecChH----HHHHHHhcCceEEech---hhcccc-hh---HHHhhccCceEEEeccCC
Confidence 55544 4777888998754322 222222 22 3456655 6888777643
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=86.76 E-value=7.3 Score=32.62 Aligned_cols=121 Identities=6% Similarity=0.031 Sum_probs=68.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCc-cCc--CCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCC------CCHHHHHHHHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTT-GEG--QLMSWDEHIMLIGHTVNCFGASVKVIG--NTGS------NSTREAIHATEQG 149 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~Gst-GE~--~~LT~~Er~~li~~~v~~~~grvpVia--gvg~------~st~~ai~la~~a 149 (359)
++..++...+.|.+||=+.+.. +.. ...+.+|-+++ ++.. .+++.. .... ...+++.+..+.|
T Consensus 20 lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~----l~~~--gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~a 93 (271)
T d2q02a1 20 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNL----AEKY--GLEIVTINAVYPFNQLTEEVVKKTEGLLRDA 93 (271)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHH----HHHT--TCEEEEEEEETTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHH----HHHc--CCcEEEeecccccCCCCHHHHHHHHHHHHHH
Confidence 4455666678899998774321 111 12234443333 3333 234322 1111 1245567778889
Q ss_pred HhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 150 FAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
+++|++.+.+.|+.+.. .+.+.+.+.++.+++. +-+.+-|.+..+..--+.+...+|.
T Consensus 94 ~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~~~li 157 (271)
T d2q02a1 94 QGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLI 157 (271)
T ss_dssp HHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCeEEEEeecCCcCcccCCHHHHHHHH
Confidence 99999999988776644 4567788888888763 2344444332233233566666665
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=86.67 E-value=5.9 Score=33.22 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
|.+...++++-|++.|++-+=+.= +...-.+.++...+..+ + +++|+|+-.+.+. ++.+.++||+.
T Consensus 27 ~~~~a~~~~~al~~~Gi~~iEitl--------~~p~a~~~i~~l~~~~p-~--~~vGaGTV~~~~~---~~~a~~aGa~F 92 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIRTLEVTL--------RSQHGLKAIQVLREQRP-E--LCVGAGTVLDRSM---FAAVEAAGAQF 92 (216)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEES--------SSTHHHHHHHHHHHHCT-T--SEEEEECCCSHHH---HHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--------CChhHHHHHHHHHHhCC-C--cceeeeeeecHHH---HHHHHhCCCCE
Confidence 357788999999999999864432 23345677777777664 4 5677777666544 66777899985
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCch-----hhHhhhh--C
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYT--G 229 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d-----~~l~~~~--~ 229 (359)
++ .|.+ .+++.++-.+ +++|...|+ ++|..+.+..+. +..-+|.--.+ ..++.+. -
T Consensus 93 iv--sP~~----~~~v~~~a~~---------~~i~~iPGv-~TpsEi~~A~~~-G~~~vKlFPA~~~~g~~~ikal~~p~ 155 (216)
T d1mxsa_ 93 VV--TPGI----TEDILEAGVD---------SEIPLLPGI-STPSEIMMGYAL-GYRRFKLFPAEISGGVAAIKAFGGPF 155 (216)
T ss_dssp EE--CSSC----CHHHHHHHHH---------CSSCEECEE-CSHHHHHHHHTT-TCCEEEETTHHHHTHHHHHHHHHTTT
T ss_pred EE--CCCC----cHHHHHHHHh---------cCCCccCCc-CCHHHHHHHHHC-CCCEEEeccccccccHHHHHHHhccc
Confidence 43 3554 3677776543 233333453 666655554443 33346764322 1233332 2
Q ss_pred CceEEEe--cCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHH
Q 018253 230 NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIE 287 (359)
Q Consensus 230 ~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~ 287 (359)
+++.++. |-+..-+..++.+|+..++++ ++++|+ +++++++..++.++...+++
T Consensus 156 p~~~fiptGGV~~~n~~~yl~~~~v~avgg-s~l~~~---~~i~~~d~~~i~~~a~~~~~ 211 (216)
T d1mxsa_ 156 GDIRFCPTGGVNPANVRNYMALPNVMCVGT-TWMLDS---SWIKNGDWARIEACSAEAIA 211 (216)
T ss_dssp TTCEEEEBSSCCTTTHHHHHHSTTBCCEEE-CTTSCH---HHHHTTCHHHHHHHHHHHHH
T ss_pred ccCceeccCCCCHHHHHHHHhcCCeEEEEc-cccCCH---HHhhcCCHHHHHHHHHHHHH
Confidence 4555544 555555566788888777654 566664 34556776777766665554
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=85.12 E-value=1.3 Score=40.32 Aligned_cols=118 Identities=11% Similarity=0.030 Sum_probs=70.0
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc---------CcCCCCHHHHHHHHHHHHHhhC-CCcEEE
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG---------EGQLMSWDEHIMLIGHTVNCFG-ASVKVI 131 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG---------E~~~LT~~Er~~li~~~v~~~~-grvpVi 131 (359)
+++|+.+-+..+|....+-+..+.++ +.|. |+++.|.+. ....|..++...-++.+++.+. ...+++
T Consensus 23 v~apm~~~~a~~g~p~~~~~~~y~~r--A~gG-gliite~~~V~~~g~~~~~~~~l~~d~~i~~~k~l~~~ih~~g~~~~ 99 (364)
T d1icpa_ 23 VLAPLTRQRSYGYIPQPHAILHYSQR--STNG-GLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFF 99 (364)
T ss_dssp EECCCCCCCCGGGSCCHHHHHHHHHT--CCTT-CEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EecccCCCcCCCCCCCHHHHHHHHHH--HhCc-eEEEEccEEECCcccCCCCCceechhhhhhhHHHHHHHhhcCCCceE
Confidence 44455555555666666554444332 3565 787777431 2235677887777777777542 234555
Q ss_pred Eec---CCC----------------------------------------C-------HHHHHHHHHHHHhCCCCEEEEc-
Q 018253 132 GNT---GSN----------------------------------------S-------TREAIHATEQGFAVGMHAALHI- 160 (359)
Q Consensus 132 agv---g~~----------------------------------------s-------t~~ai~la~~a~~~Gadav~v~- 160 (359)
++. |.. + .++-++-|+.|+++|+|+|-+.
T Consensus 100 ~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~rA~~AGfDgVeIH~ 179 (364)
T d1icpa_ 100 CQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHG 179 (364)
T ss_dssp EEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 544 211 1 3566778999999999999883
Q ss_pred ----------CCCCCC------CCHHHHHHHHHHHHhc
Q 018253 161 ----------NPYYGK------TSLEGLISHFDSVLSM 182 (359)
Q Consensus 161 ----------pP~y~~------~s~~~l~~yf~~Ia~a 182 (359)
.|.+++ -|.+.=.+|..+|.++
T Consensus 180 ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~a 217 (364)
T d1icpa_ 180 AHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEA 217 (364)
T ss_dssp CTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHH
T ss_pred cCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhh
Confidence 466543 3445556666666553
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=84.90 E-value=0.78 Score=40.77 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=52.0
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHH-----------------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHH
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDE-----------------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 148 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~E-----------------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~ 148 (359)
..+++.|++++.+.+..|=. +..-| ..+.+....+. .+++|||+-=|=.+-.|.++
T Consensus 176 ~~~~~~GaD~i~v~~~gG~~--~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~-~~~v~viadGGIr~g~Dv~K---- 248 (329)
T d1p0ka_ 176 GKLYEAGAAAVDIGGYGGTN--FSKIENLRRQRQISFFNSWGISTAASLAEIRSE-FPASTMIASGGLQDALDVAK---- 248 (329)
T ss_dssp HHHHHHTCSEEEEEC-----------------CCGGGGTTCSCCHHHHHHHHHHH-CTTSEEEEESSCCSHHHHHH----
T ss_pred HHHHhcCCCEEEEcCCCCCC--ccccchhhcccCccchhHhHHHHHHHHHHHHhh-cCCceEEEcCCcccHHHHHH----
Confidence 34667899999998765522 11111 11222222333 34799999444345566544
Q ss_pred HHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHh
Q 018253 149 GFAVGMHAALHINPYYGK---TSLEGLISHFDSVLS 181 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~ 181 (359)
|..+|||+|++-.|+.+. ..++++.++++.+.+
T Consensus 249 AlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~ 284 (329)
T d1p0ka_ 249 AIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILE 284 (329)
T ss_dssp HHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHH
Confidence 446999999999998765 346777777776654
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.66 E-value=1.5 Score=40.09 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC-----------CCCCC------CCHHHHHHHHHHHHhc
Q 018253 140 REAIHATEQGFAVGMHAALHIN-----------PYYGK------TSLEGLISHFDSVLSM 182 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~p-----------P~y~~------~s~~~l~~yf~~Ia~a 182 (359)
++=++-|+.|+++|+|+|-+.. |++.+ -|.|-=.+|..+|.++
T Consensus 163 ~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~a 222 (374)
T d1gwja_ 163 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDA 222 (374)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHH
Confidence 3456778899999999997754 55432 3555555666666653
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=84.22 E-value=1.8 Score=37.85 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC------------------CCC----HHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------------LMS----WDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~------------------~LT----~~Er~~li~~~v~~~~grvpViag 133 (359)
.|...+...++.+.+.|++|+....+++-.. -++ ..--.+++..+.+..++++|||+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~ 248 (311)
T d1juba_ 169 FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEE
T ss_pred chhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEec
Confidence 3556678888888899999998776554210 011 122244555556667788999986
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
=|=.+-++++++.. +|||+|.+....+
T Consensus 249 GGI~s~~Da~~~i~----aGA~~Vql~tal~ 275 (311)
T d1juba_ 249 GGIETGQDAFEHLL----CGATMLQIGTALH 275 (311)
T ss_dssp SSCCSHHHHHHHHH----HTCSEEEECHHHH
T ss_pred CCcCCHHHHHHHHH----cCCCceeeeHhhH
Confidence 66678888887765 8999999977654
|
| >d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.03 E-value=5.5 Score=34.42 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=67.3
Q ss_pred CCCCCCCHHHH----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC------CHH
Q 018253 71 LPDGRFDLEAY----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN------STR 140 (359)
Q Consensus 71 ~~dg~ID~~~l----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~------st~ 140 (359)
.+.+..+.+.+ ...++.+++.|||.|++ -|. -+.+|-+.+++.+.+ ....+++++.+.-. +-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~-ET~-----~~~~E~~~~~~~~~~-~~~~~~~~~s~~~~~~g~~~~G~ 186 (300)
T d3bofa2 114 YPLGSTLFEEFYENFRETVEIMVEEGVDGIIF-ETF-----SDILELKAAVLAARE-VSRDVFLIAHMTFDEKGRSLTGT 186 (300)
T ss_dssp TTTSSBCHHHHHHHHHHHHHHHHHTTCSEEEE-EEE-----CCHHHHHHHHHHHHH-HCSSSCEEEEECCCTTSCCTTCC
T ss_pred CccccccHHHHHHHHHHHHHHHHhcCcceeee-eee-----ecHHHHHHHHHhHHh-hccccceEEEEEecCCCCccccc
Confidence 34566666654 45788888999997663 222 356676666666544 55567777654311 111
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPS 192 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~ 192 (359)
+..+.+..+.+.|++++.+..- ...+.+....+.+... .|+++|-+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~inc~----~~~~~~~~~~~~~~~~~~~~~~vypN~g 236 (300)
T d3bofa2 187 DPANFAITFDELDIDALGINCS----LGPEEILPIFQELSQYTDKFLVVEPNAG 236 (300)
T ss_dssp CHHHHHHHHHTSSCSEEEEESS----SCHHHHHHHHHHHHHTCCSEEEEECCSS
T ss_pred chhHHHhhhcccccchHhhccc----ccccchhhhhhhhhccccccccccCCCC
Confidence 2344455667789999887642 2345555555555543 6899997653
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=83.73 E-value=1.1 Score=38.67 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred HHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++|.+.|+..+..+|+ .|-+.-+...+..+++ ++.. ++|||+-.|=.+..++ -.|.++|+|+|++-.-
T Consensus 138 ~ak~Le~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i---~~~~--~vPvIvDAGIG~pSdA----a~AMElG~daVLvNTA 208 (251)
T d1xm3a_ 138 LARKLEELGVHAIMPGASPIGSGQGILNPLNLSFI---IEQA--KVPVIVDAGIGSPKDA----AYAMELGADGVLLNTA 208 (251)
T ss_dssp HHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHH---HHHC--SSCBEEESCCCSHHHH----HHHHHTTCSEEEESHH
T ss_pred HHHHHHHcCChhHHHhhhhhhcCCCcCChHHHHHH---HhcC--CccEEEecCCCCHHHH----HHHHHccCCEEEechh
Confidence 456778899999999995 5666667777766655 3443 6999995554456554 4567799999999765
Q ss_pred CCCCCCHHHHHHHHHHH
Q 018253 163 YYGKTSLEGLISHFDSV 179 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~I 179 (359)
.-...++-.+-+-|+.-
T Consensus 209 IA~a~dPv~MA~A~~~A 225 (251)
T d1xm3a_ 209 VSGADDPVKMARAMKLA 225 (251)
T ss_dssp HHTSSSHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHH
Confidence 54455665555555543
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.71 E-value=5.3 Score=33.58 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
.-+.+.+.++.+++.|..++=+ .|.......-..++=.+.++.+.+.++.++.+++-+ .+.+.++|+++++..++.+.
T Consensus 23 tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 102 (255)
T d1rvka1 23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGF 102 (255)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceecccccccccchhhhhhhhcccchh
Confidence 3578999999999999999877 344333445578888899999999999999998855 46689999999999999987
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCH-HHHHHHh--cCCCeEEEecc
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPP-RVIHTMA--QSPNLAGVKEC 218 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~-e~l~~La--~~pnivGiK~s 218 (359)
. .+=-|.-. .+ .+-++.+.+. .||..=.. ..+. +.+.++. ..-.++-+|-+
T Consensus 103 ~--~iEeP~~~-~d----~~~~~~l~~~~~~pI~~~E~------~~~~~~~~~~~i~~~~~dii~~d~~ 158 (255)
T d1rvka1 103 D--WIEEPMDE-QS----LSSYKWLSDNLDIPVVGPES------AAGKHWHRAEWIKAGACDILRTGVN 158 (255)
T ss_dssp S--EEECCSCT-TC----HHHHHHHHHHCSSCEEECSS------CSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred h--hhcCCccc-cc----HHHHHHHHHhcccceeehhh------cccchhhhhhhhhhchhhhcccccc
Confidence 5 33334321 12 2445667665 57654431 2334 4556664 45678888864
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=83.12 E-value=2.1 Score=36.07 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc------------------------cCcCCCCHHHHH-HHHHHHHHhhCCCcEE
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT------------------------GEGQLMSWDEHI-MLIGHTVNCFGASVKV 130 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst------------------------GE~~~LT~~Er~-~li~~~v~~~~grvpV 130 (359)
.-++...+.++...+.|..-++..|.+ |...+....|+. .+++. +.....++||
T Consensus 98 ~~~~e~~~~~~~~~~~gl~~ivcvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~-~~~~~~~i~v 176 (226)
T d1w0ma_ 98 LKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGL-VSRHFPEVSV 176 (226)
T ss_dssp CBHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHH-HHHHCTTSEE
T ss_pred hhccchHHHHHHHHHcCCEEEEecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhh-hhccCCCceE
Confidence 555667778888888888877665543 332222222333 33333 3445678999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-HHHHHHHHHHHHh
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS-LEGLISHFDSVLS 181 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s-~~~l~~yf~~Ia~ 181 (359)
+.| |+-++.+..+++ .+.|+|++++-.=.....+ ...+.+..+++.+
T Consensus 177 lyg-GgV~~~n~~~~~---~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~ 224 (226)
T d1w0ma_ 177 ITG-AGIESGDDVAAA---LRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE 224 (226)
T ss_dssp EEE-SSCCSHHHHHHH---HHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred EEe-cCcCChHHHHHH---hcCCCCEEEechheecCCCHHHHHHHHHHHHHh
Confidence 998 556666555544 4589999999855443333 4567777777665
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.11 E-value=0.87 Score=41.15 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
-.....+.|++++.+-+..|-...-...-.. .+..+++.+++++|||+-=|=-+--|.+ .|-.+|||+|.+.-|+
T Consensus 230 da~~a~~~G~d~i~vsnhggr~~d~~~~~~~-~l~~i~~~~~~~~~iiadGGIR~G~Dv~----KALALGA~~V~igrp~ 304 (349)
T d1tb3a1 230 DAELAMKHNVQGIVVSNHGGRQLDEVSASID-ALREVVAAVKGKIEVYMDGGVRTGTDVL----KALALGARCIFLGRPI 304 (349)
T ss_dssp HHHHHHHTTCSEEEECCGGGTSSCSBCCHHH-HHHHHHHHHTTSSEEEEESSCCSHHHHH----HHHHTTCSCEEESHHH
T ss_pred HHHHHHHhhccceeeeccccccccccccchh-hcceeeeccCCCeeEEeccCcCcHHHHH----HHHHcCCCEEEEChHH
Confidence 3556778999999999888865544333333 4445567788999999944433333433 2456999999999998
Q ss_pred CCC---CCHHHHHHHHHHHHhc
Q 018253 164 YGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+. ..++++.++.+.+.+.
T Consensus 305 L~~la~~G~~gv~~~l~~l~~E 326 (349)
T d1tb3a1 305 LWGLACKGEDGVKEVLDILTAE 326 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 764 3478888888877654
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.05 E-value=1.8 Score=39.56 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHH--------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~E--------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+.+.+|++.|+|++-|.. |.+..-|..+ --.+.+.......-.+|||+-=|-.+..+.+ .|..+||
T Consensus 160 e~a~~L~~aGaD~VkVGi--G~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~----KAla~GA 233 (365)
T d1zfja1 160 EGARALYDAGVDVVKVGI--GPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIV----KALAAGG 233 (365)
T ss_dssp HHHHHHHHTTCSEEEECS--SCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHH----HHHHTTC
T ss_pred HHHHHHHhcCCceEEeee--cccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhh----hhhhccC
Confidence 456677889999998863 3444445443 2234433322223368999954444555544 3457999
Q ss_pred CEEEEcCCCCC
Q 018253 155 HAALHINPYYG 165 (359)
Q Consensus 155 dav~v~pP~y~ 165 (359)
|+||+-.++-.
T Consensus 234 d~VMlG~~lAg 244 (365)
T d1zfja1 234 NAVMLGSMFAG 244 (365)
T ss_dssp SEEEESTTTTT
T ss_pred CEEEecchhcc
Confidence 99999987653
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.67 E-value=1.9 Score=37.09 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHCCCCEEEEccCc-cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gst-GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.+.|.+.|+..+...|+- |-+.-+...+-.+++ ++. .++|||++.|=.+..|+. .|.++|+|+|++-.=
T Consensus 140 ~ak~le~~Gc~~vMplgsPIGsg~Gi~n~~~l~~i---~~~--~~vpvivdAGIg~psdaa----~AMElG~dgVLvnsa 210 (243)
T d1wv2a_ 140 IARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRII---LEE--AKVPVLVDAGVGTASDAA----IAMELGCEAVLMNTA 210 (243)
T ss_dssp HHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHH---HHH--CSSCBEEESCCCSHHHHH----HHHHHTCSEEEESHH
T ss_pred HHhHHHHcCceeeeecccccccccccccHHHHHhc---ccc--CCcceEeecccCCHHHHH----HHHHccCCEEEechH
Confidence 4567788999999999965 444445555554444 333 479999987766777764 566799999999765
Q ss_pred CCCCCCHHHHHHHHHH
Q 018253 163 YYGKTSLEGLISHFDS 178 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~ 178 (359)
.....++..+.+-|+.
T Consensus 211 Ia~A~dP~~mA~A~~~ 226 (243)
T d1wv2a_ 211 IAHAKDPVMMAEAMKH 226 (243)
T ss_dssp HHTSSSHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHH
Confidence 5555666666555544
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=82.36 E-value=1.2 Score=39.08 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCC---------------CC----HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQL---------------MS----WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAI 143 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~---------------LT----~~Er~~li~~~v~~~~grvpViagvg~~st~~ai 143 (359)
.+.+.+.+.|++|+.+.++++-... ++ ..--.+.+..+.+.+ ++|||+.=|=.+.++++
T Consensus 180 ~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~ 257 (311)
T d1ep3a_ 180 PIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVL 257 (311)
T ss_dssp HHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHH
T ss_pred HHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHH
Confidence 4555566899999999887654211 01 122234455555443 68998765666788888
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCC
Q 018253 144 HATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~ 167 (359)
+... +|||+||+....|..|
T Consensus 258 ~~i~----~GAd~V~ig~~~~~~P 277 (311)
T d1ep3a_ 258 EMYM----AGASAVAVGTANFADP 277 (311)
T ss_dssp HHHH----HTCSEEEECTHHHHCT
T ss_pred HHHH----cCCCEEEecHHHHcCC
Confidence 7663 5999999987655444
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=81.83 E-value=8.2 Score=33.44 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=65.9
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH-hhCCCcEEEEec-------CC-CC-HHHHHHHHHHHHhCCCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN-CFGASVKVIGNT-------GS-NS-TREAIHATEQGFAVGMH 155 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~-~~~grvpViagv-------g~-~s-t~~ai~la~~a~~~Gad 155 (359)
++..+.|++++-++---+ +.-+.+++.+.++.+.+ +....+|+++=+ .. .+ .+..++.++.+.++|+|
T Consensus 113 ~~a~~~GadaVk~lv~~~--~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD 190 (291)
T d1to3a_ 113 QAVKRDGAKALKLLVLWR--SDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 190 (291)
T ss_dssp HHHHHTTCCEEEEEEEEC--TTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred HHHHhccCceEEEEEeeC--CcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCc
Confidence 344566887764432221 11134666676666665 345568876632 11 12 33467788999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
-+=+-.|.......++...+|+++.++ .|+++-
T Consensus 191 i~K~~~p~~~~~~~~~~~~~~~~~~~~~~~p~vvL 225 (291)
T d1to3a_ 191 LYKVEMPLYGKGARSDLLTASQRLNGHINMPWVIL 225 (291)
T ss_dssp EEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEEC
T ss_pred EEEEecCCCchhhhHHHHHHHHHHhhcCCCcEEEE
Confidence 998888877666778889999999887 576654
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=81.82 E-value=4.3 Score=33.96 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV--iagv--g~~st~~ai~la~~a 149 (359)
....+.++++++.-.+.|+.++.+...- ++.+.+..++ .+.| ++|. |..+++.-+..++.|
T Consensus 14 ~~T~~~i~~lc~~A~~~~~~aVcV~P~~--------------v~~a~~~l~~s~v~v~~VigFP~G~~~~~~k~~e~~~a 79 (211)
T d1ub3a_ 14 TATLEEVAKAAEEALEYGFYGLCIPPSY--------------VAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALA 79 (211)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEECCGGG--------------HHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHH--------------HHHHHHHccCCCCceEEEEecccccCcHHHHHHHHHHH
Confidence 4567889999999999999999987642 2234444443 3444 3442 666899999999999
Q ss_pred HhCCCCEEEEcCCCC-CC-CCHHHHHHHHHHHHhcC---Ce-EEEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 150 FAVGMHAALHINPYY-GK-TSLEGLISHFDSVLSMG---PT-IIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 150 ~~~Gadav~v~pP~y-~~-~s~~~l~~yf~~Ia~a~---Pi-iiYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
.+.|||-+=++.|+. .+ ...+.+.+..+++.+.. ++ +|-. |+ .|+.+.+.++++ ....-.||-|+|
T Consensus 80 i~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlE----t~-~L~~~ei~~a~~~a~~aGadfiKTSTG 154 (211)
T d1ub3a_ 80 CARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILE----TG-YFSPEEIARLAEAAIRGGADFLKTSTG 154 (211)
T ss_dssp HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECC----GG-GSCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred HHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEec----cc-cCCHHHHHHHHHHHHHhccceEEecCC
Confidence 999999997776654 33 46677888888887753 22 3443 33 468888887764 346778999876
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.25 E-value=15 Score=31.22 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=106.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----c------------CCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 70 YLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----G------------QLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 70 F~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~------------~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
|---|.-|++...++++.+ +.|+|-+=++=-.+. + .-+|.+.-.++++.+.+. ..+|++.=
T Consensus 10 y~taG~P~~~~s~~~l~~l-~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~--~~~pivlm 86 (248)
T d1geqa_ 10 YLTAGDPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH--SSTPIVLM 86 (248)
T ss_dssp EEETTSSCHHHHHHHHHHH-GGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT--CCCCEEEE
T ss_pred EEcCcCCCHHHHHHHHHHH-HcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhc--CCCcEEEE
Confidence 3346778999999999886 679986644222221 1 124677777778777653 46898876
Q ss_pred cCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-C
Q 018253 134 TGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-S 209 (359)
Q Consensus 134 vg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~ 209 (359)
...|..-. --++.+.++++|+|++++.-=. .|+..+|.....+. +..+..=.| .-+.+-++++++ .
T Consensus 87 ~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP-----~eE~~~~~~~~~~~gl~~I~lvaP-----tt~~~ri~~i~~~s 156 (248)
T d1geqa_ 87 TYYNPIYRAGVRNFLAEAKASGVDGILVVDLP-----VFHAKEFTEIAREEGIKTVFLAAP-----NTPDERLKVIDDMT 156 (248)
T ss_dssp ECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC-----GGGHHHHHHHHHHHTCEEEEEECT-----TCCHHHHHHHHHHC
T ss_pred eccccccccCHHHHhhhhcccCeeEEeccCCc-----HHHHHHHHhhccccCcceEEEecc-----cchhHHHHHHHhcC
Confidence 66655333 4688999999999999985421 24445566555555 555555455 245678888873 4
Q ss_pred CCeEEE---------eccCchh------hHhhhhCCceEEEecCC----chhhhhhhhcCCceeecccc
Q 018253 210 PNLAGV---------KECVGND------RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 210 pnivGi---------K~ss~d~------~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~a 259 (359)
..++.+ +....+. +++++++ .-+..|.. ++.- ..+..|+||+|.|++
T Consensus 157 ~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~--~Pv~vGFGI~~~e~v~-~~~~~~ADGvIVGSa 222 (248)
T d1geqa_ 157 TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICR--NKVAVGFGVSKREHVV-SLLKEGANGVVVGSA 222 (248)
T ss_dssp SSEEEEECCC-------CCCHHHHHHHHHHHHHCS--SCEEEESCCCSHHHHH-HHHHTTCSEEEECHH
T ss_pred CCeEEEEecccccccchhhhhhHHHHHHHHhhhcc--cceeeecccCCHHHHH-HHHhcCCCEEEECHH
Confidence 554444 4332221 3444433 34555553 2232 235679999999865
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=80.94 E-value=4.6 Score=36.00 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHH--------HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHI--------MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~--------~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+..+.|++.|+|++.+.. |.+..-|..+.. .+.+.....-.-.+|||+-=|-.+..+.. .|..+||
T Consensus 151 ~~a~~l~~~GaD~v~VGi--g~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdia----kAla~GA 224 (330)
T d1vrda1 151 EGTEALIKAGADAVKVGV--GPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIV----KALAAGA 224 (330)
T ss_dssp HHHHHHHHTTCSEEEECS--SCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHH----HHHHTTC
T ss_pred HHHHHHHHcCCCEEeecc--ccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchh----eeeeccC
Confidence 346778899999999843 455555555433 33333222223469999843333444433 4567999
Q ss_pred CEEEEcCC
Q 018253 155 HAALHINP 162 (359)
Q Consensus 155 dav~v~pP 162 (359)
|+||+-.+
T Consensus 225 d~Vm~Gs~ 232 (330)
T d1vrda1 225 ESVMVGSI 232 (330)
T ss_dssp SEEEESHH
T ss_pred ceeeecch
Confidence 99999754
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=80.67 E-value=1.1 Score=38.69 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=56.9
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHH------------------------HHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVN------------------------MQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~------------------------~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
-.|+=-.++=-+++||+||.+.++++++ .|++.|++.|+.-|... |..|=.
T Consensus 83 ~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~-----~a~~G~ 157 (247)
T d1twda_ 83 ELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS-----DALQGL 157 (247)
T ss_dssp HTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS-----STTTTH
T ss_pred HcCCCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCC-----chhHHH
Confidence 4444444555567799999999999865 56788999999777542 334445
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 115 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
..++..++..++++ +++|-| -+.+..-++.+ .|++.+=.
T Consensus 158 ~~L~~L~~~a~~~i-Im~GgG-I~~~Ni~~l~~----~g~~e~H~ 196 (247)
T d1twda_ 158 SKIMELIAHRDAPI-IMAGAG-VRAENLHHFLD----AGVLEVHS 196 (247)
T ss_dssp HHHHHHHTSSSCCE-EEEESS-CCTTTHHHHHH----HTCSEEEE
T ss_pred HHHHHHHHhcCCcE-EEecCC-CCHHHHHHHHH----cCCCEEEE
Confidence 56666667677776 777654 22222222221 37776654
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=80.63 E-value=1.2 Score=39.67 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...+..+.+.|++.|.+=|-|.+..+-....+..+ ..+..++|||++=+=.+.+++.+..+. .|+|+||+.-
T Consensus 139 ~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i-----~~~~~~ipvi~NGdI~s~~d~~~~l~~---tg~dgVMiGR 210 (305)
T d1vhna_ 139 EEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKAL-----SVLEKRIPTFVSGDIFTPEDAKRALEE---SGCDGLLVAR 210 (305)
T ss_dssp HHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGG-----GGSCCSSCEEEESSCCSHHHHHHHHHH---HCCSEEEESG
T ss_pred hHHHHHHHHhCCcEEEechhhhhhccccchhhhHH-----HhhhhhhhhhcccccccHHHHHHHHHh---cCCCeEehhH
Confidence 35677788999999999999988777666655433 234568999987666678887776544 7999999998
Q ss_pred CCCCCCC
Q 018253 162 PYYGKTS 168 (359)
Q Consensus 162 P~y~~~s 168 (359)
-.|..|-
T Consensus 211 gal~nP~ 217 (305)
T d1vhna_ 211 GAIGRPW 217 (305)
T ss_dssp GGTTCTT
T ss_pred HHHHhhh
Confidence 7777665
|
| >d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.58 E-value=4.9 Score=35.77 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=64.8
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSN 137 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~ 137 (359)
++.+++ ++.=-++-+.+.+++..+...| |=|====.-........+||.+.+-.+++. ++.++=..+++++.
T Consensus 23 Llgtii---KP~~GLsp~~~a~~~~e~~~GG-D~IKDDE~lad~~~~p~~eRv~~~~~av~~a~~eTG~~~lYa~NiT~~ 98 (320)
T d5ruba1 23 VVGTII---KPKLGLRPKPFAEACHAFWLGG-DFIKNDEPQGNQPFAPLRDTIALVADAMRRAQDETGEAKLFSANITAD 98 (320)
T ss_dssp EEEEEC---SSSSCCCHHHHHHHHHHHTTTC-SEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCS
T ss_pred eeEeee---cCCCCCCHHHHHHHHHHHHhcC-ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCcceeeecccCC
Confidence 444444 4443489999999999888888 744322245667788999999777777665 44444456688877
Q ss_pred CHHHHHHHHHHHHhCCC
Q 018253 138 STREAIHATEQGFAVGM 154 (359)
Q Consensus 138 st~~ai~la~~a~~~Ga 154 (359)
+.++.++.++.+.+.|+
T Consensus 99 ~~~em~~ra~~~~e~gg 115 (320)
T d5ruba1 99 DPFEIIARGEYVLETFG 115 (320)
T ss_dssp SHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 88999999999988765
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=80.20 E-value=13 Score=31.52 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHH--CCCCEEEEccCccCc--CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHHHHHHHHHHh
Q 018253 77 DLEAYDDLVNMQIV--NGAEGMIVGGTTGEG--QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREAIHATEQGFA 151 (359)
Q Consensus 77 D~~~l~~li~~li~--~Gv~Gl~v~GstGE~--~~LT~~Er~~li~~~v~~~~grvpViagvg~~-st~~ai~la~~a~~ 151 (359)
|.+.+...+..+.+ .++.-|+.+=+..|+ +..|.++|.++++.+++.-... ++-+-.. ..+...++.+.+.+
T Consensus 57 ~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d---~iDiEl~~~~~~~~~li~~a~~ 133 (252)
T d1gqna_ 57 STQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVD---MIDLELFTGDADVKATVDYAHA 133 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCS---EEEEEGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCc---eEeccccccHHHHHHHHHHhhc
Confidence 45666666666544 256677777777774 3567888888888777642111 2233221 22333445555566
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.|+.-++..--+-..|+.+++.+.|++..+.
T Consensus 134 ~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~ 164 (252)
T d1gqna_ 134 HNVYVVMSNHDFHQTPSAEEMVSRLRKMQAL 164 (252)
T ss_dssp TTCEEEEEEEESSCCCCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHHh
Confidence 6664443332122235667777777776654
|