Citrus Sinensis ID: 018260

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MQNAPSPSPSPTTTPLSSPTSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAAA
ccccccccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEcccccccccEEEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccEEEEcccccccccEEEcccccccccccEEEEcHHcccccccccEEEEEEEEEEEEcccccccccccccccccHHHHHHHHHcccccccEEEEEccEEEEEEEEEEccccHHHHHHHccccccccccEEEccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHccccccccEEcc
ccccccccccccccccccccccEEEEEEEcEEEEEEEEccEccccccccEEEEcccEEEcccEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccHEEEHHHHHccccccccEEEEEEEEEEEEEccccccccccEcccccHHHHHHHHHHcccccEEEEEEcccEcHHHHHEEHcccHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHccccccccHccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHcccHHHHHccc
mqnapspspsptttplssptsslsltqtingshhFTIKGyslskgigigkhiasdnfsvggyQWAIYfypdgknpednsTYVSVFIALASEGTDVRALFELTLVdqsgkgkhkvhshfdrslesgpytlkyrgsmwgYKRFFRRAMLEtsdflkddclkinctvGVVVSAidcsrlhsiqvpesdigdhfgmlleneessditfnVVGEKFHAHKLVlaarspvfetEFLDAMeednheivvtdMEPKVFKALLHFIYKDtliedgecsasssscvpsvsDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLvgglgsienlgikaaa
mqnapspspsptttplsspTSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVdqsgkgkhkvhshfdrslesgpytLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLvgglgsienlgikaaa
MQNApspspsptttplssptsslsltQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGEcsasssscvpsvsDTleakllaaaekYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAAA
***************************TINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQS******VHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECS*****CVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLG*****
************************LTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAI********QVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAME**NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKA**
***********************SLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVD*************DRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDG************VSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAAA
*******************TSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQS******************PYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIED**********VPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGI****
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MQNAPSPSPSPTTTPLSSPTSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q9SRV1465 BTB/POZ and MATH domain-c yes no 0.933 0.720 0.808 1e-155
A1L4W5415 BTB/POZ and MATH domain-c no no 0.952 0.824 0.682 1e-135
Q1EBV6410 BTB/POZ and MATH domain-c no no 0.919 0.804 0.702 1e-134
Q9M8J9406 BTB/POZ and MATH domain-c no no 0.924 0.817 0.579 1e-108
O22286408 BTB/POZ and MATH domain-c no no 0.880 0.774 0.581 1e-106
Q8L765407 BTB/POZ and MATH domain-c no no 0.866 0.764 0.595 1e-106
Q5NVK7374 Speckle-type POZ protein yes no 0.857 0.823 0.328 1e-40
Q6ZWS8374 Speckle-type POZ protein yes no 0.857 0.823 0.328 1e-40
O43791374 Speckle-type POZ protein yes no 0.857 0.823 0.328 1e-40
Q0VCW1374 Speckle-type POZ protein yes no 0.857 0.823 0.328 1e-40
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/344 (80%), Positives = 299/344 (86%), Gaps = 9/344 (2%)

Query: 2   QNAPSPSPSPTTTPLSSPTSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG 61
           +N   PSP PTTT       SLS+TQTINGSH FTIKGYSL+KGIGIGKHIASD F+VGG
Sbjct: 26  RNFEMPSP-PTTT-------SLSVTQTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGG 77

Query: 62  YQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRS 121
           YQWAIYFYPDGKNPEDNS YVSVFIALAS+GTDVRALFEL+L+DQSGKGKHKVHSHFDR+
Sbjct: 78  YQWAIYFYPDGKNPEDNSAYVSVFIALASDGTDVRALFELSLLDQSGKGKHKVHSHFDRA 137

Query: 122 LESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQV 181
           LESGPYTLKYRGSMWGYKRFFRR MLETSDFLKDDCLKINCTVGVVVS IDC RLHSI V
Sbjct: 138 LESGPYTLKYRGSMWGYKRFFRRLMLETSDFLKDDCLKINCTVGVVVSEIDCPRLHSIHV 197

Query: 182 PESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIV 241
           P SDIG HFGMLLENE+ SDITFNV GEKF AH+LVLAARSPVFE+EFLD   E++ +I 
Sbjct: 198 PASDIGSHFGMLLENEDGSDITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIE 257

Query: 242 VTDMEPKVFKALLHFIYKDTLIEDGE-CSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLR 300
           VTDMEPKVFKALLH+IYKD LIED E  S+S SS  PS SDTL AKLL AA+KY LPRL 
Sbjct: 258 VTDMEPKVFKALLHYIYKDALIEDAESSSSSGSSVGPSASDTLAAKLLGAADKYKLPRLS 317

Query: 301 LMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLV 344
           LMCESVLCK ISV+SVA+ LALADR+ A  LKSVCLKFAAENL+
Sbjct: 318 LMCESVLCKDISVDSVANILALADRYNASALKSVCLKFAAENLI 361
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1 Back     alignment and function description
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1 Back     alignment and function description
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1 Back     alignment and function description
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1 Back     alignment and function description
>sp|O43791|SPOP_HUMAN Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q0VCW1|SPOP_BOVIN Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
449462751428 PREDICTED: BTB/POZ and MATH domain-conta 0.947 0.794 0.814 1e-160
225439239431 PREDICTED: BTB/POZ and MATH domain-conta 0.933 0.777 0.805 1e-154
225436081411 PREDICTED: BTB/POZ and MATH domain-conta 0.952 0.832 0.780 1e-154
359479214423 PREDICTED: BTB/POZ and MATH domain-conta 0.935 0.794 0.791 1e-154
296084009405 unnamed protein product [Vitis vinifera] 0.913 0.809 0.807 1e-153
30678912 465 BTB/POZ and M4 domain-containing protein 0.933 0.720 0.808 1e-153
21536509436 unknown [Arabidopsis thaliana] 0.919 0.756 0.816 1e-152
297833054437 hypothetical protein ARALYDRAFT_896389 [ 0.919 0.755 0.816 1e-152
356571773432 PREDICTED: BTB/POZ and MATH domain-conta 0.930 0.773 0.799 1e-151
356560813434 PREDICTED: BTB/POZ and MATH domain-conta 0.916 0.758 0.805 1e-151
>gi|449462751|ref|XP_004149104.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Cucumis sativus] gi|449508344|ref|XP_004163287.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/340 (81%), Positives = 301/340 (88%)

Query: 10  SPTTTPLSSPTSSLSLTQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFY 69
           SP  +PL+SPTSS S+T+TINGSH+F IKGYSL+KGIG+GKHIAS+NFSVGGYQWAIYFY
Sbjct: 3   SPNKSPLASPTSSRSVTETINGSHNFVIKGYSLAKGIGVGKHIASENFSVGGYQWAIYFY 62

Query: 70  PDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTL 129
           PDGKNPEDNS YVSVFIALAS+GTDVRALFELTLVDQSG GKHKVHSHFDRSLESGPYTL
Sbjct: 63  PDGKNPEDNSAYVSVFIALASDGTDVRALFELTLVDQSGDGKHKVHSHFDRSLESGPYTL 122

Query: 130 KYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDH 189
           KYRGSMWGYKRFFRR  LETS FLKDDCLKINCTVGVVVS ID SRLHSI VPESDIG H
Sbjct: 123 KYRGSMWGYKRFFRRTSLETSVFLKDDCLKINCTVGVVVSGIDSSRLHSIHVPESDIGAH 182

Query: 190 FGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKV 249
           FG LLENEE SDITFNV GEK  AHKLVLAARSPVFE +F++ MEEDN EI++T+MEP+V
Sbjct: 183 FGTLLENEEGSDITFNVSGEKLRAHKLVLAARSPVFENDFVNMMEEDNDEILITEMEPRV 242

Query: 250 FKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCK 309
           FKALLHFIY+DTL ED E   +SSS VPS+ D+L AKLLAAA+KY LPRLRLMCESVLCK
Sbjct: 243 FKALLHFIYRDTLPEDDEFLEASSSSVPSLPDSLPAKLLAAADKYDLPRLRLMCESVLCK 302

Query: 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGS 349
            ISVNSV+H LALAD + A DLKSVCLKF AENLV  + S
Sbjct: 303 DISVNSVSHILALADLYHAADLKSVCLKFTAENLVAVMQS 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439239|ref|XP_002277085.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436081|ref|XP_002277148.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479214|ref|XP_003632235.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084009|emb|CBI24397.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30678912|ref|NP_566212.2| BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana] gi|75266234|sp|Q9SRV1.1|BPM4_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 4; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 4; Short=AtBPM4 gi|6006867|gb|AAF00643.1|AC009540_20 unknown protein [Arabidopsis thaliana] gi|13605821|gb|AAK32896.1|AF367309_1 AT3g03740/F20H23_23 [Arabidopsis thaliana] gi|16323324|gb|AAL15375.1| AT3g03740/F20H23_23 [Arabidopsis thaliana] gi|332640459|gb|AEE73980.1| BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21536509|gb|AAM60841.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297833054|ref|XP_002884409.1| hypothetical protein ARALYDRAFT_896389 [Arabidopsis lyrata subsp. lyrata] gi|297330249|gb|EFH60668.1| hypothetical protein ARALYDRAFT_896389 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356571773|ref|XP_003554047.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356560813|ref|XP_003548681.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2079384465 BPM4 "BTB-POZ and MATH domain 0.899 0.694 0.777 2.7e-132
TAIR|locus:2147167410 BPM5 "BTB-POZ and MATH domain 0.894 0.782 0.679 1.3e-116
TAIR|locus:2080188415 BPM6 "BTB-POZ and MATH domain 0.894 0.773 0.657 3.6e-112
TAIR|locus:2082445406 BPM2 "BTB-POZ and MATH domain 0.874 0.773 0.578 5.5e-93
TAIR|locus:2063953408 BPM3 [Arabidopsis thaliana (ta 0.905 0.796 0.542 8.1e-92
ZFIN|ZDB-GENE-050320-3394 spopla "speckle-type POZ prote 0.805 0.733 0.319 5.2e-33
RGD|1311613335 Spop "speckle-type POZ protein 0.534 0.573 0.361 1.7e-27
UNIPROTKB|Q6IQ16392 SPOPL "Speckle-type POZ protei 0.534 0.489 0.370 1.5e-28
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.805 0.772 0.303 2.4e-28
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.805 0.772 0.303 2.4e-28
TAIR|locus:2079384 BPM4 "BTB-POZ and MATH domain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 252/324 (77%), Positives = 270/324 (83%)

Query:    27 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFI 86
             QTINGSH FTIKGYSL+KGIGIGKHIASD F+VGGYQWAIYFYPDGKNPEDNS YVSVFI
Sbjct:    43 QTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDGKNPEDNSAYVSVFI 102

Query:    87 ALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAM 146
             ALAS+GTDVRALFEL+L+DQSGKGKHKVHSHFDR+LESGPYTLKYRGSMWGYKRFFRR M
Sbjct:   103 ALASDGTDVRALFELSLLDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRLM 162

Query:   147 LETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHFGMLLENEESSDITFNV 206
             LETSDFLKDDCLKINCTVGVVVS IDC RLHSI VP SDIG HFGMLLENE+ SDITFNV
Sbjct:   163 LETSDFLKDDCLKINCTVGVVVSEIDCPRLHSIHVPASDIGSHFGMLLENEDGSDITFNV 222

Query:   207 VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDG 266
              GEKF AH+LVLAARSPVFE+EFLD   E++ +I VTDMEPKVFKALLH+IYKD LIED 
Sbjct:   223 SGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVTDMEPKVFKALLHYIYKDALIEDA 282

Query:   267 EXXXXXXXXXX-XXXDTXXXXXXXXXXXYVLPRLRLMCESVLCKVISVNSVAHTLALADR 325
             E              DT           Y LPRL LMCESVLCK ISV+SVA+ LALADR
Sbjct:   283 ESSSSSGSSVGPSASDTLAAKLLGAADKYKLPRLSLMCESVLCKDISVDSVANILALADR 342

Query:   326 HCAMDLKSVCLKFAAENLVGGLGS 349
             + A  LKSVCLKFAAENL+  + S
Sbjct:   343 YNASALKSVCLKFAAENLIAVMRS 366
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0042631 "cellular response to water deprivation" evidence=IEP
GO:0071472 "cellular response to salt stress" evidence=IEP
TAIR|locus:2147167 BPM5 "BTB-POZ and MATH domain 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080188 BPM6 "BTB-POZ and MATH domain 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082445 BPM2 "BTB-POZ and MATH domain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063953 BPM3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1311613 Spop "speckle-type POZ protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IQ16 SPOPL "Speckle-type POZ protein-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0VCW1SPOP_BOVINNo assigned EC number0.32840.85790.8235yesno
Q1EBV6BPM5_ARATHNo assigned EC number0.70270.91920.8048nono
Q9SRV1BPM4_ARATHNo assigned EC number0.80810.93310.7204yesno
Q6P8B3SPOP_XENTRNo assigned EC number0.32840.85790.8235yesno
Q5NVK7SPOP_PONABNo assigned EC number0.32840.85790.8235yesno
O43791SPOP_HUMANNo assigned EC number0.32840.85790.8235yesno
Q7T330SPOP_DANRENo assigned EC number0.31970.85790.8235yesno
Q6ZWS8SPOP_MOUSENo assigned EC number0.32840.85790.8235yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 2e-27
pfam00651101 pfam00651, BTB, BTB/POZ domain 3e-21
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 4e-21
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 3e-09
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 4e-08
smart0006195 smart00061, MATH, meprin and TRAF homology 2e-07
pfam00917116 pfam00917, MATH, MATH domain 3e-06
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 31  GSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALAS 90
           G H + I  +S       G+ I S  F VGGY+W I  YP+G    ++  Y+S+++ L  
Sbjct: 1   GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDG--ESGDYLSLYLELDK 54

Query: 91  EGTD-----VRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRA 145
             +D     VRA F L LV+Q+G GK    S               +GS WG+ +F    
Sbjct: 55  GESDLEKWSVRAEFTLKLVNQNG-GKSLSKSFTHVFF-------SEKGSGWGFPKFISWD 106

Query: 146 MLETSDFLKDDCLKINCTV 164
            LE S +L DD L I   V
Sbjct: 107 DLEDSYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PHA02713 557 hypothetical protein; Provisional 99.95
PHA02790 480 Kelch-like protein; Provisional 99.95
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA03098 534 kelch-like protein; Provisional 99.94
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.94
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.9
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.89
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.89
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.88
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.88
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.88
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.88
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.87
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.87
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.87
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.87
KOG4591280 consensus Uncharacterized conserved protein, conta 99.83
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.81
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.81
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.8
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.78
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.75
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.7
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.7
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.69
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.65
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.63
smart0006195 MATH meprin and TRAF homology. 99.54
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.45
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.22
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.8
KOG0511516 consensus Ankyrin repeat protein [General function 98.58
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.45
KOG2838401 consensus Uncharacterized conserved protein, conta 98.45
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.37
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 98.04
KOG3473112 consensus RNA polymerase II transcription elongati 97.43
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.41
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.14
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 97.08
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.95
KOG2714 465 consensus SETA binding protein SB1 and related pro 96.72
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.61
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.59
KOG0511 516 consensus Ankyrin repeat protein [General function 96.4
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.13
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 95.9
KOG1778 319 consensus CREB binding protein/P300 and related TA 95.06
KOG2715210 consensus Uncharacterized conserved protein, conta 94.87
KOG0297391 consensus TNF receptor-associated factor [Signal t 94.68
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 93.43
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 91.72
KOG2723221 consensus Uncharacterized conserved protein, conta 81.55
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.95  E-value=5.6e-28  Score=238.14  Aligned_cols=158  Identities=16%  Similarity=0.206  Sum_probs=149.8

Q ss_pred             CchHHHHHHhhcCCCCCCeEEEeC-CeEEeeehhhhhccCHHHHHhhccccccC--cceEEEcCCCHHHHHHHHHHHccC
Q 018260          184 SDIGDHFGMLLENEESSDITFNVV-GEKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYKD  260 (359)
Q Consensus       184 ~~l~~~l~~~~~~~~~~Dv~i~v~-~~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~  260 (359)
                      ..+.+.|.+|+.++.++||+|.++ |++|+|||.|||++|+||++||.++|+|.  +.+|.|.++++++|+.+|+|+||+
T Consensus        10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~   89 (557)
T PHA02713         10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR   89 (557)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence            567799999999999999999997 89999999999999999999999999975  789999999999999999999998


Q ss_pred             CCCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018260          261 TLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAA  340 (359)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~  340 (359)
                      .+                 +.+++++||.+|++|+++.|++.|++||.+.++++||+.++..|..+.+..|.+.|.+||.
T Consensus        90 ~i-----------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~  152 (557)
T PHA02713         90 HI-----------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM  152 (557)
T ss_pred             CC-----------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH
Confidence            64                 5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhcCCcccCCccc
Q 018260          341 ENLVGGLGSIENLGIKAA  358 (359)
Q Consensus       341 ~~~~~~~~~~~f~~l~~~  358 (359)
                      +||.++.++++|++|+.+
T Consensus       153 ~~f~~v~~~~ef~~L~~~  170 (557)
T PHA02713        153 SNIPTLITTDAFKKTVFE  170 (557)
T ss_pred             HHHHHHhCChhhhhCCHH
Confidence            999999999999998854

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-35
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 7e-21
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 1e-18
2cr2_A159 Solution Structure Of N-Terminal Domain Of Speckle- 1e-06
3hql_A145 Structures Of Spop-Substrate Complexes: Insights In 2e-06
3ivb_A145 Structures Of Spop-Substrate Complexes: Insights In 3e-06
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 33/321 (10%)
Query: 27  QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVS 83
           + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E       
Sbjct: 3   KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61
Query: 84  VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 143
             + ++   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F R
Sbjct: 62  YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 113
Query: 144 RAML--ETSDFLKDDCLKINCTVGVVVSAIDCS---RLHSIQVPESDIGDHFGMLLENEE 198
           R  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN  
Sbjct: 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSR 173
Query: 199 SSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFI 257
            +D    V G++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ FI
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 233
Query: 258 YKDTLIEDGEXXXXXXXXXXXXXDTXXXXXXXXXXXYVLPRLRLMCESVLCKVISVNSVA 317
           Y                      D            Y L RL++MCE  LC  +SV + A
Sbjct: 234 Y---------------TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 278
Query: 318 HTLALADRHCAMDLKSVCLKF 338
             L LAD H A  LK+  + F
Sbjct: 279 EILILADLHSADQLKTQAVDF 299
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159 Back     alignment and structure
>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145 Back     alignment and structure
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-109
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-66
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 3e-64
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 4e-39
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 7e-37
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 4e-33
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 2e-31
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 2e-31
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-31
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 4e-29
1d00_A168 Tumor necrosis factor receptor associated protein 6e-28
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-17
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 9e-15
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 7e-14
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-13
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-12
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 7e-12
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 8e-12
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 5e-11
3b84_A119 Zinc finger and BTB domain-containing protein 48; 5e-11
2vpk_A116 Myoneurin; transcription regulation, transcription 5e-11
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 6e-11
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-11
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 7e-11
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 9e-11
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 2e-10
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 1e-09
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  321 bits (825), Expect = e-109
 Identities = 106/328 (32%), Positives = 168/328 (51%), Gaps = 35/328 (10%)

Query: 26  TQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYV 82
           ++ +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+
Sbjct: 2   SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYL 59

Query: 83  SVFIALASE-GTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRF 141
           S+++ L S   ++VRA F+ ++++  G+           ++ES       +G  WG+K+F
Sbjct: 60  SLYLLLVSCPKSEVRAKFKFSILNAKGEETK--------AMESQRAYRFVQGKDWGFKKF 111

Query: 142 FRRAML--ETSDFLKDDCLKINCTVGVVVSAIDCSRLHS---IQVPESDIGDHFGMLLEN 196
            RR  L  E +  L DD L + C V VV  +++ S  ++   ++VPE  + D  G L EN
Sbjct: 112 IRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWEN 171

Query: 197 EESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEE-DNHEIVVTDMEPKVFKALLH 255
              +D    V G++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ 
Sbjct: 172 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC 231

Query: 256 FIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNS 315
           FIY        + +                 LLAAA+KY L RL++MCE  LC  +SV +
Sbjct: 232 FIYTGKAPNLDKMA---------------DDLLAAADKYALERLKVMCEDALCSNLSVEN 276

Query: 316 VAHTLALADRHCAMDLKSVCLKFAAENL 343
            A  L LAD H A  LK+  + F   + 
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYHA 304
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.93
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.92
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.92
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.91
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.91
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.91
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.91
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.91
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.91
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.9
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.9
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.9
2vpk_A116 Myoneurin; transcription regulation, transcription 99.9
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.9
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.89
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.89
1d00_A168 Tumor necrosis factor receptor associated protein 99.89
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.88
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.88
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.88
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.87
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.87
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.85
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.84
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.81
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.46
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 99.35
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.15
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.09
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.93
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.54
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.47
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.44
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.32
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.18
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.98
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.7
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.41
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.29
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 96.27
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 96.08
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.82
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 89.7
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 89.33
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 85.89
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 83.13
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 80.88
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 80.14
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=3.1e-58  Score=423.74  Aligned_cols=301  Identities=35%  Similarity=0.631  Sum_probs=252.0

Q ss_pred             eeeeeeEEEEEEccccccccCCCCCeeeeceeeecC---eEEEEEEEcCCCCCCCCCCcEEEEEEecc-CCccceeeEEE
Q 018260           26 TQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFEL  101 (359)
Q Consensus        26 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg---~~W~l~~~p~g~~~~~~~~~lsl~L~~~~-~~w~~~~~~~~  101 (359)
                      .++..++|+|+|+||+.++ .+.|+++.|++|.+||   ++|+|.+||+|++.+ +++|+|+||.|.+ ..|++.|+|++
T Consensus         2 s~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~-~~~~lslyL~~~~~~~~~v~a~~~~   79 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECCC-CEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCCcc-CCCcEEEEEEEcCCCCCcEEEEEEE
Confidence            4578899999999999987 4668999999999998   499999999998743 6789999999976 57999999999


Q ss_pred             EEEecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc--cCCCccCCeEEEEEeeeeeeee---eccCCc
Q 018260          102 TLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVVSA---IDCSRL  176 (359)
Q Consensus       102 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~~~---~~~~~~  176 (359)
                      +|+|++|+......       ....++|. +..+|||.+|++|++|+  .++|+.||+++|+|+|.|....   ......
T Consensus        80 ~l~~~~~~~~~~~~-------~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~  151 (312)
T 3hqi_A           80 SILNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM  151 (312)
T ss_dssp             EEECTTSCEEEEEE-------CSSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred             EEEeCCCCcccccc-------cCCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence            99999886543211       11335565 35689999999999994  4689999999999999998632   222233


Q ss_pred             cccccCCCchHHHHHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHH
Q 018260          177 HSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLH  255 (359)
Q Consensus       177 ~~~~~p~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~  255 (359)
                      ..+.+|++.+.+++..++.++.++||+|.++|++|+|||.|||+||+||++||.++++|+ ..+|.|+++++++|+.+|+
T Consensus       152 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~  231 (312)
T 3hqi_A          152 NMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC  231 (312)
T ss_dssp             SSCCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHH
T ss_pred             cccCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHccCCCCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHH
Q 018260          256 FIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVC  335 (359)
Q Consensus       256 ~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~  335 (359)
                      |||++.++               +..+++.+||.+|++|+++.|+..|+++|++.++.+|++.++.+|.+|++..|++.|
T Consensus       232 ~iYt~~~~---------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~  296 (312)
T 3hqi_A          232 FIYTGKAP---------------NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQA  296 (312)
T ss_dssp             HHHHSCCT---------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcCCCCC---------------ChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999984               677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhcCCc
Q 018260          336 LKFAAENLVGGLGSIE  351 (359)
Q Consensus       336 ~~~i~~~~~~~~~~~~  351 (359)
                      ++||..|+.+++++++
T Consensus       297 ~~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          297 VDFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHHTC--------
T ss_pred             HHHHHHHHHHHhhCCC
Confidence            9999999999988763
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 2e-27
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 1e-25
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 6e-25
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 3e-24
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-16
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-15
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 15/153 (9%)

Query: 27  QTINGSHHFTIKGYSLSKGI---GIGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTY 81
           Q  NG + + I  + +            I S  F  G  GY+  +  +      +  + Y
Sbjct: 1   QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANY 60

Query: 82  VSVFIALASEGTD------VRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM 135
           +S+F+       D       +    LT++DQS     + H     +        +     
Sbjct: 61  ISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR 120

Query: 136 ----WGYKRFFRRAMLETSDFLKDDCLKINCTV 164
               +GY  F     L    F+KDD L + C V
Sbjct: 121 NPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 153
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.91
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.91
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.9
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.9
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.9
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.89
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.01
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.93
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.34
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.28
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.11
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.83
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 94.59
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.15
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 91.41
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 84.01
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 80.96
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=176.19  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=104.4

Q ss_pred             eeEEEEEEccccccccC---CCCCeeeeceeeec--CeEEEEEEEcCCCCCCCCCCcEEEEEEecc------CCccceee
Q 018260           30 NGSHHFTIKGYSLSKGI---GIGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALAS------EGTDVRAL   98 (359)
Q Consensus        30 ~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~------~~w~~~~~   98 (359)
                      .|+|+|+|+||+.+++.   +.++.+.||+|.+|  |++|+|.+||+|++.. +.+|+||||++..      ..|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~-~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCcCcccccceeeE
Confidence            58999999999988653   34678999999988  9999999999998743 6789999999864      26999999


Q ss_pred             EEEEEEecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc-cCCCccCCeEEEEEeeeee
Q 018260           99 FELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE-TSDFLKDDCLKINCTVGVV  167 (359)
Q Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~-~~~~l~~d~l~i~~~v~i~  167 (359)
                      |+|+|+|+.+....................+.....+|||.+|+++++|+ ++|||.||+|+|+|+|++.
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcccCCcEeCCEEEEEEEEEec
Confidence            99999999765432211111111111111233456789999999999996 4689999999999999874
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure